00:37:48Started by upstream project "Trigger" build number 60300:37:48originally caused by:
00:37:48 Started by timer
00:37:48Running as SYSTEM
00:37:48Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:37:48The recommended git tool is: NONE
00:37:48No credentials specified
00:37:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:37:48Fetching changes from the remote Git repository
00:37:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:37:48Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:37:48 > git --version # timeout=10
00:37:48 > git --version # 'git version 2.43.5'
00:37:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:37:49 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:37:49Checking out Revision d0318995b612a9bc3bee56f573d8be3a4226bcac (origin/merge_ci)
00:37:49 > git config core.sparsecheckout # timeout=10
00:37:49 > git checkout -f d0318995b612a9bc3bee56f573d8be3a4226bcac # timeout=10
00:37:49Commit message: "Add version.properties to etc/omero.properties"
00:37:49 > git rev-list --no-walk d221f1e24a93882abcee3646b1cc07a797fc5a8b # timeout=10
00:37:49Cleaning workspace
00:37:49 > git rev-parse --verify HEAD # timeout=10
00:37:49Resetting working tree
00:37:49 > git reset --hard # timeout=10
00:37:49 > git clean -fdx # timeout=10
00:37:49Copied 6 artifacts from "OMERO-python-superbuild-build" build number 50400:37:49[OMERO-build] $ /bin/bash -xe /tmp/jenkins8407986445453689572.sh
00:37:49+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:37:49+ cd src
00:37:49+ export OMERO_BRANCH=merge_ci
00:37:49+ OMERO_BRANCH=merge_ci
00:37:49+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:37:49+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:37:49+ source /home/omero/settings.env
00:37:49++ OMERO_DB_HOST=pg
00:37:49++ OMERO_DB_USER=postgres
00:37:49++ OMERO_DB_PASS=
00:37:49++ OMERO_ROOT_PASS=omero
00:37:49++ OMERO_DATA_DIR=/OMERO
00:37:49++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:37:49+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:37:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:37:53Collecting zeroc-ice==3.6.5
00:37:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:37:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.7 MB/s eta 0:00:00
00:37:56Installing collected packages: zeroc-ice
00:37:57Successfully installed zeroc-ice-3.6.5
00:37:5700:37:57[notice] A new release of pip available: 22.3.1 -> 25.2
00:37:57[notice] To update, run: python3.11 -m pip install --upgrade pip
00:37:57+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:37:57Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:37:57Collecting setuptools<66
00:37:57 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:37:57Collecting omero-py
00:37:57 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:37:58Collecting urllib3<2
00:37:58 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:37:58Collecting appdirs
00:37:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:37:58Collecting future
00:37:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:37:58Collecting numpy<3
00:37:58 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:37:59Collecting Pillow>=10.0.0
00:37:59 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:37:59Collecting PyYAML
00:37:59 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:37:59Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:37:59Collecting requests
00:37:59 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:37:59Collecting portalocker
00:37:59 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:37:59Collecting charset_normalizer<4,>=2
00:37:59 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:37:59Collecting idna<4,>=2.5
00:37:59 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:37:59Collecting certifi>=2017.4.17
00:37:59 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:38:00Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:38:00 Attempting uninstall: setuptools
00:38:00 Found existing installation: setuptools 65.5.1
00:38:00 Uninstalling setuptools-65.5.1:
00:38:00 Successfully uninstalled setuptools-65.5.1
00:38:05Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-1.26.20
00:38:0500:38:05[notice] A new release of pip available: 22.3.1 -> 25.2
00:38:05[notice] To update, run: python3.11 -m pip install --upgrade pip
00:38:05+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:38:05++ deactivate nondestructive
00:38:05++ '[' -n '' ']'
00:38:05++ '[' -n '' ']'
00:38:05++ hash -r
00:38:05++ '[' -n '' ']'
00:38:05++ unset VIRTUAL_ENV
00:38:05++ unset VIRTUAL_ENV_PROMPT
00:38:05++ '[' '!' nondestructive = nondestructive ']'
00:38:05++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:05++ export VIRTUAL_ENV
00:38:05++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:38:05++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:38:05++ export PATH
00:38:05++ '[' -n '' ']'
00:38:05++ '[' -z '' ']'
00:38:05++ _OLD_VIRTUAL_PS1=
00:38:05++ PS1='(omero-virtualenv) '
00:38:05++ export PS1
00:38:05++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:38:05++ export VIRTUAL_ENV_PROMPT
00:38:05++ hash -r
00:38:05+ source docs/hudson/OMERO.sh
00:38:05++ set -e
00:38:05++ set -u
00:38:05++ set -x
00:38:05++ source docs/hudson/functions.sh
00:38:05++ echo Building merge_ci
00:38:05Building merge_ci
00:38:05++ python3 ./build.py build-dev release-all
00:38:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:38:0600:38:06check-ivy:
00:38:06Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:38:06Created dir: /home/omero/workspace/OMERO-build/src/target
00:38:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:0700:38:07build-scons:
00:38:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:07No sub-builds to iterate on
00:38:07Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:0700:38:07buildlist:
00:38:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:0700:38:07clean:
00:38:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:0800:38:08python-clean:
00:38:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-d0318995b6-ice36-b511') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:08 warnings.warn(
00:38:08running clean
00:38:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:38:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:0800:38:08python-clean:
00:38:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-d0318995b6-ice36-b511') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:08 warnings.warn(
00:38:08running clean
00:38:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:38:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:0900:38:09python-clean:
00:38:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-d0318995b6-ice36-b511') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:09 warnings.warn(
00:38:09running clean
00:38:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:38:09Deleting directory /home/omero/workspace/OMERO-build/src/target
00:38:0900:38:09build-scons:
00:38:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:0900:38:09build:
00:38:09No sub-builds to iterate on
00:38:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:0900:38:09tools-init:
00:38:09no-op
00:38:0900:38:09retrieve:
00:38:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:10WARNING: An illegal reflective access operation has occurred
00:38:10WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:38:10WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:38:10WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:38:10WARNING: All illegal access operations will be denied in a future release
00:39:0900:39:09prepare:
00:39:09Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:39:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:39:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:0900:39:09pre-compile:
00:39:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:0900:39:09compile:
00:39:09no-op
00:39:0900:39:09package:
00:39:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:39:1000:39:10install:
00:39:10:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-d0318995b6-ice36-b511 :: integration :: Sun Aug 31 00:38:09 UTC 2025
00:39:10 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:39:10:: publishing :: omero#omero_client
00:39:10 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-d0318995b6-ice36-b511/omero_client-5.6.3-574-d0318995b6-ice36-b511.jar
00:39:10 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-d0318995b6-ice36-b511/omero_client-5.6.3-574-d0318995b6-ice36-b511.xml
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:1000:39:10retrieve:
00:39:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:1000:39:10dist:
00:39:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:39:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:39:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:10Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:39:10Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:39:10Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:39:10Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:39:11Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:1100:39:11copy-licenses:
00:39:11Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:11Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:39:11Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:39:1100:39:11copy-history:
00:39:11Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:1100:39:11copy-etc:
00:39:11Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:11Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:39:1100:39:11copy-sql:
00:39:11Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:39:1400:39:14copy-server:
00:39:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:39:1400:39:14copy-client:
00:39:14Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:39:15 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:39:1600:39:16update-version:
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:1600:39:16create-workdirs:
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:39:1600:39:16copy-luts:
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:16Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:1600:39:16test-compile:
00:39:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:1600:39:16testng-init:
00:39:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:1900:39:19,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:39:1900:39:19,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - No custom configurators were discovered as a service.
00:39:1900:39:19,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:1900:39:19,191 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:1900:39:19,192 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:39:1900:39:19,192 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:39:1900:39:19,193 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:39:1900:39:19,193 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:1900:39:19,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:1900:39:19,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:39:1900:39:19,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:1900:39:19,196 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@502aa66a - Resource [logback.xml] occurs multiple times on the classpath.
00:39:1900:39:19,196 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@502aa66a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:1900:39:19,196 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@502aa66a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:39:1900:39:19,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:39:1900:39:19,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:39:1900:39:19,411 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:39:1900:39:19,412 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5a06fcfc - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:39:1900:39:19,412 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5a06fcfc - Please move "immediateFlush" property into the enclosing appender.
00:39:1900:39:19,473 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5a06fcfc - Setting the "immediateFlush" property of the enclosing appender to true
00:39:1900:39:19,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:39:1900:39:19,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:39:1900:39:19,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:39:1900:39:19,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:39:1900:39:19,474 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:39:1900:39:19,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:39:1900:39:19,475 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4c9a3ae - End of configuration.
00:39:1900:39:19,477 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5b54fe5b - Registering current configuration as safe fallback point
00:39:1900:39:19,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:39:1900:39:19lifecycle.test-compile:
00:39:19Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:19Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:19warning: [options] bootstrap class path not set in conjunction with -source 8
00:39:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:20import omero.grid.RawAccessRequest;
00:39:20 ^
00:39:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:21import omero.grid.RawAccessRequest;
00:39:21 ^
00:39:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:21import omero.grid.RawAccessRequest;
00:39:21 ^
00:39:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:21import omero.model.ImportJob;
00:39:21 ^
00:39:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:21import omero.model.ImportJobI;
00:39:21 ^
00:39:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:39:21 IObject link = (IObject) linkClass.newInstance();
00:39:21 ^
00:39:21 where T is a type-variable:
00:39:21 T extends Object declared in class Class
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:39:22 T copy = (T) obj.getClass().newInstance();
00:39:22 ^
00:39:22 where T is a type-variable:
00:39:22 T extends Object declared in class Class
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:22 RawAccessRequest raw = new RawAccessRequest();
00:39:22 ^
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:22 RawAccessRequest raw = new RawAccessRequest();
00:39:22 ^
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:22 raw.repoUuid = legacy.root().getHash().getValue();
00:39:22 ^
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:22 raw.command = "rm";
00:39:22 ^
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:22 raw.args = Arrays.asList(path);
00:39:22 ^
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:39:22 final IObject link = linkClass.newInstance();
00:39:22 ^
00:39:22 where T is a type-variable:
00:39:22 T extends Object declared in class Class
00:39:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:39:22 originalLink.setChild(annotationClass.newInstance());
00:39:22 ^
00:39:22 where T is a type-variable:
00:39:22 T extends Object declared in class Class
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 RoiResult r = svc.findByImage(id, new RoiOptions());
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:23 final RawAccessRequest request = new RawAccessRequest();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:23 final RawAccessRequest request = new RawAccessRequest();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:23 request.repoUuid = repo.root().getHash().getValue();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:23 request.command = "exists";
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:23 request.args = Collections.singletonList(dirPath);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:23 final RawAccessRequest request = new RawAccessRequest();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:23 final RawAccessRequest request = new RawAccessRequest();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:23 request.repoUuid = repo.root().getHash().getValue();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:23 request.command = "exists";
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:23 request.args = Collections.singletonList(dirName);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:23 final ImportJob importJob = new ImportJobI();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:23 final ImportJob importJob = new ImportJobI();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:39:23 importJob.setImageName(omero.rtypes.rstring(name));
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:39:23 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:23 final String savedName = sent.getImageName().getValue().toString();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:23 final String savedDesc = sent.getImageDescription().getValue().toString();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:23 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:23 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:39:23 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:39:23 table = svc.getTable(f.getId().getValue());
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:23 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:23 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:23 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:39:23 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:23 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:23 svc.getShapeStatsRestricted(
00:39:23 ^
00:39:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:23 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:39:23 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:24 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:24 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:24 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:24 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:24 p2.setRelatedTo(p1);
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:24 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:24 pixels1.setRelatedTo(pixels2);
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:24 Pixels pixels = pixels1.getRelatedTo();
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:24 Assert.assertNull(pixels1.getRelatedTo());
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:24 pixels1.setRelatedTo(pixels2);
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:24 Pixels pixels = pixels1.getRelatedTo();
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:24 Assert.assertNull(pixels1.getRelatedTo());
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:24 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:24 ^
00:39:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:24 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:24 ^
00:39:24Note: Some input files use unchecked or unsafe operations.
00:39:24Note: Recompile with -Xlint:unchecked for details.
00:39:2488 warnings
00:39:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1056290900.tmp
00:39:24Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:39:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:24:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-d0318995b6-ice36-b511 :: integration :: Sun Aug 31 00:39:16 UTC 2025
00:39:24 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:39:24:: publishing :: omero#OmeroJava-test
00:39:24 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-d0318995b6-ice36-b511.jar
00:39:24 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-d0318995b6-ice36-b511.xml
00:39:2400:39:24build-eclipse:
00:39:24No sub-builds to iterate on
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:2400:39:24retrieve:
00:39:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:3200:39:32prepare:
00:39:32Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:3300:39:33release-clients:
00:39:33Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-d0318995b6-ice36-b511.zip
00:39:3900:39:39release-zip:
00:39:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-d0318995b6-ice36-b511.zip
00:39:5000:39:50BUILD SUCCESSFUL
00:39:50Total time: 1 minute 44 seconds
00:39:50++ '[' -d .git ']'
00:39:50++ python3 ./build.py release-src
00:39:50Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:5000:39:50release-src-git:
00:39:50Releasing openmicroscopy-5.6.3-574-d0318995b6-ice36-b511
00:39:52 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-d0318995b6-ice36-b511.zip
00:39:52 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-d0318995b6-ice36-b511-base.zip
00:39:5300:39:53BUILD SUCCESSFUL
00:39:53Total time: 3 seconds
00:39:53++ echo BUILD_NUMBER=511
00:39:53++ echo OMERO_BRANCH=merge_ci
00:39:53++ git_info
00:39:53+++ git rev-parse HEAD
00:39:53++ HEAD=d0318995b612a9bc3bee56f573d8be3a4226bcac
00:39:53++ git log --max-count=1 d0318995b612a9bc3bee56f573d8be3a4226bcac
00:39:53++ env
00:39:53++ sort
00:39:53Archiving artifacts
00:40:18Finished: SUCCESS
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