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13:22:11 Started by upstream project "Trigger" build number 87
13:22:11 originally caused by:
13:22:11  Started by timer
13:22:11 Running as SYSTEM
13:22:11 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
13:22:11 The recommended git tool is: NONE
13:22:11 No credentials specified
13:22:11  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
13:22:11 Fetching changes from the remote Git repository
13:22:11  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
13:22:11 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
13:22:11  > git --version # timeout=10
13:22:11  > git --version # 'git version 2.52.0'
13:22:11  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:22:16  > git rev-parse origin/merge_ci^{commit} # timeout=10
13:22:16 Checking out Revision ebd437d5f75569da3c63c6937e51baa9ebbbf113 (origin/merge_ci)
13:22:16  > git config core.sparsecheckout # timeout=10
13:22:16  > git checkout -f ebd437d5f75569da3c63c6937e51baa9ebbbf113 # timeout=10
13:22:18 Commit message: "Add version.properties to etc/omero.properties"
13:22:18  > git rev-list --no-walk 7053313a8e9c0f8328bd856ed3cc027515e75d2b # timeout=10
13:22:18 Cleaning workspace
13:22:18  > git rev-parse --verify HEAD # timeout=10
13:22:18 Resetting working tree
13:22:18  > git reset --hard # timeout=10
13:22:19  > git clean -fdx # timeout=10
13:23:09 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 61
13:23:09 [OMERO-build] $ /bin/bash -xe /tmp/jenkins8921592981525517187.sh
13:23:09 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
13:23:09 + cd src
13:23:09 + export OMERO_BRANCH=merge_ci
13:23:09 + OMERO_BRANCH=merge_ci
13:23:09 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
13:23:09 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
13:23:47 + source /home/omero/settings.env
13:23:47 ++ OMERO_DB_HOST=pg
13:23:47 ++ OMERO_DB_USER=postgres
13:23:47 ++ OMERO_DB_PASS=
13:23:47 ++ OMERO_ROOT_PASS=omero
13:23:47 ++ OMERO_DATA_DIR=/OMERO
13:23:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:23:47 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
13:24:08 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
13:24:09 Collecting zeroc-ice==3.6.5
13:24:09   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
13:24:12      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.8 MB/s eta 0:00:00
13:24:12 Installing collected packages: zeroc-ice
13:24:16 Successfully installed zeroc-ice-3.6.5
13:24:16 
13:24:16 [notice] A new release of pip available: 22.3.1 -> 26.2.1
13:24:16 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:24:16 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
13:24:16 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
13:24:17 Collecting setuptools<66
13:24:17   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
13:24:17 Collecting omero-py
13:24:17   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
13:24:17 Collecting appdirs
13:24:17   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
13:24:17 Collecting future
13:24:17   Using cached future-1.0.0-py3-none-any.whl (491 kB)
13:24:18 Collecting numpy<3,>=2
13:24:18   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
13:24:19 Collecting Pillow>=10.0.0
13:24:19   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
13:24:19 Collecting PyYAML
13:24:19   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
13:24:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
13:24:19 Collecting requests
13:24:19   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
13:24:19 Collecting portalocker
13:24:19   Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
13:24:20 Collecting charset_normalizer<4,>=2
13:24:20   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
13:24:20 Collecting idna<4,>=2.5
13:24:20   Using cached idna-3.19-py3-none-any.whl (68 kB)
13:24:20 Collecting urllib3<3,>=1.26
13:24:20   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
13:24:20 Collecting certifi>=2023.5.7
13:24:20   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
13:24:21 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
13:24:22   Attempting uninstall: setuptools
13:24:22     Found existing installation: setuptools 65.5.1
13:24:22     Uninstalling setuptools-65.5.1:
13:24:23       Successfully uninstalled setuptools-65.5.1
13:25:18 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
13:25:18 
13:25:18 [notice] A new release of pip available: 22.3.1 -> 26.2.1
13:25:18 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:25:18 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
13:25:18 ++ deactivate nondestructive
13:25:18 ++ '[' -n '' ']'
13:25:18 ++ '[' -n '' ']'
13:25:18 ++ hash -r
13:25:18 ++ '[' -n '' ']'
13:25:18 ++ unset VIRTUAL_ENV
13:25:18 ++ unset VIRTUAL_ENV_PROMPT
13:25:18 ++ '[' '!' nondestructive = nondestructive ']'
13:25:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
13:25:18 ++ export VIRTUAL_ENV
13:25:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:25:18 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:25:18 ++ export PATH
13:25:18 ++ '[' -n '' ']'
13:25:18 ++ '[' -z '' ']'
13:25:18 ++ _OLD_VIRTUAL_PS1=
13:25:18 ++ PS1='(omero-virtualenv) '
13:25:18 ++ export PS1
13:25:18 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
13:25:18 ++ export VIRTUAL_ENV_PROMPT
13:25:18 ++ hash -r
13:25:18 + source docs/hudson/OMERO.sh
13:25:18 ++ set -e
13:25:18 ++ set -u
13:25:18 ++ set -x
13:25:18 ++ source docs/hudson/functions.sh
13:25:18 ++ echo Building merge_ci
13:25:18 Building merge_ci
13:25:18 ++ python3 ./build.py build-dev release-all
13:25:18 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:25:20 
13:25:20 check-ivy:
13:25:20 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:25:20 Created dir: /home/omero/workspace/OMERO-build/src/target
13:25:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:25:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:25:22 
13:25:22 build-scons:
13:25:22 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:25:24 No sub-builds to iterate on
13:25:24 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:25:24 
13:25:24 buildlist:
13:25:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:25:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:25:25 
13:25:25 clean:
13:25:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:25:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:25:26 
13:25:26 python-clean:
13:25:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:25:26 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-ebd437d5f7-ice36-b70') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:25:26   warnings.warn(
13:25:26 running clean
13:25:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:25:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:25:27 
13:25:27 python-clean:
13:25:27 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:25:27 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-ebd437d5f7-ice36-b70') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:25:27   warnings.warn(
13:25:27 running clean
13:25:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:25:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:25:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:25:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:25:28 
13:25:28 python-clean:
13:25:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:25:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-ebd437d5f7-ice36-b70') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:25:28   warnings.warn(
13:25:28 running clean
13:25:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:25:28 Deleting directory /home/omero/workspace/OMERO-build/src/target
13:25:30 
13:25:30 build-scons:
13:25:30 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:25:31 
13:25:31 build:
13:25:31 No sub-builds to iterate on
13:25:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:25:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:25:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:25:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:25:33 
13:25:33 tools-init:
13:25:33 no-op
13:25:33 
13:25:33 retrieve:
13:25:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:25:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:28:02 
13:28:02 prepare:
13:28:02 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:28:02 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:28:02 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:28:02 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:28:02 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:28:02 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:28:02 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:28:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:28:02 
13:28:02 pre-compile:
13:28:02 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:28:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:28:13 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:28:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:28:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:28:21 
13:28:21 compile:
13:28:21 no-op
13:28:21 
13:28:21 package:
13:28:21 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:28:26 
13:28:26 install:
13:28:26 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-ebd437d5f7-ice36-b70 :: integration :: Sun Sep 06 13:25:33 UTC 2026
13:28:26 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:28:26 :: publishing :: omero#omero_client
13:28:26 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-ebd437d5f7-ice36-b70/omero_client-5.6.3-677-ebd437d5f7-ice36-b70.jar
13:28:26 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-ebd437d5f7-ice36-b70/omero_client-5.6.3-677-ebd437d5f7-ice36-b70.xml
13:28:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:28:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:28:27 
13:28:27 retrieve:
13:28:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:28:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:28:28 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:28:28 
13:28:28 dist:
13:28:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:28:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:28:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:28:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:28:29 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:28:29 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
13:28:30 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:28:30 Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:28:31 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:28:32 
13:28:32 copy-licenses:
13:28:32 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:28:32 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:28:32 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:28:33 
13:28:33 copy-history:
13:28:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:28:33 
13:28:33 copy-etc:
13:28:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:28:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:28:34 
13:28:34 copy-sql:
13:28:34 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:29:17 
13:29:17 copy-server:
13:29:17 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
13:29:17 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
13:29:25 
13:29:25 copy-client:
13:29:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:29:31 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
13:29:31 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
13:29:39 
13:29:39 update-version:
13:29:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:29:39 
13:29:39 create-workdirs:
13:29:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:29:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:29:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
13:29:39 
13:29:39 copy-luts:
13:29:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:29:39 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:29:39 
13:29:39 test-compile:
13:29:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:29:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:29:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:29:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:29:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:29:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:29:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:29:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:29:42 
13:29:42 testng-init:
13:29:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:29:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:29:52 13:29:51,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
13:29:52 13:29:51,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - No custom configurators were discovered as a service.
13:29:52 13:29:51,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:29:52 13:29:51,680 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:29:52 13:29:51,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:29:52 13:29:51,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:29:52 13:29:51,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:29:52 13:29:51,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:29:52 13:29:51,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:29:52 13:29:51,694 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:29:52 13:29:51,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:29:52 13:29:51,699 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs multiple times on the classpath.
13:29:52 13:29:51,699 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:29:52 13:29:51,699 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:29:52 13:29:51,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:29:52 13:29:51,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:29:52 13:29:51,953 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:29:52 13:29:51,955 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:29:52 13:29:51,955 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - Please move "immediateFlush" property into the enclosing appender.
13:29:52 13:29:52,023 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - Setting the "immediateFlush" property of the enclosing appender to true
13:29:52 13:29:52,024 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:29:52 13:29:52,024 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:29:52 13:29:52,024 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:29:52 13:29:52,024 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:29:52 13:29:52,024 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:29:52 13:29:52,024 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:29:52 13:29:52,025 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5f069693 - End of configuration.
13:29:52 13:29:52,027 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30384990 - Registering current configuration as safe fallback point
13:29:52 13:29:52,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:29:52 
13:29:52 lifecycle.test-compile:
13:29:52 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:29:52 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:29:52 warning: [options] bootstrap class path not set in conjunction with -source 8
13:29:52 warning: [options] source value 8 is obsolete and will be removed in a future release
13:29:52 warning: [options] target value 8 is obsolete and will be removed in a future release
13:29:52 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
13:29:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:54 import omero.grid.RawAccessRequest;
13:29:54                  ^
13:29:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:55 import omero.grid.RawAccessRequest;
13:29:55                  ^
13:29:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:55 import omero.grid.RawAccessRequest;
13:29:55                  ^
13:29:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:29:55 import omero.model.ImportJob;
13:29:55                   ^
13:29:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:29:55 import omero.model.ImportJobI;
13:29:55                   ^
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
13:29:56         IObject link = (IObject) linkClass.newInstance();
13:29:56                                           ^
13:29:56   where T is a type-variable:
13:29:56     T extends Object declared in class Class
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:29:56         T copy = (T) obj.getClass().newInstance();
13:29:56                                    ^
13:29:56   where T is a type-variable:
13:29:56     T extends Object declared in class Class
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:56         RawAccessRequest raw = new RawAccessRequest();
13:29:56         ^
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:56         RawAccessRequest raw = new RawAccessRequest();
13:29:56                                    ^
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:29:56         raw.repoUuid = legacy.root().getHash().getValue();
13:29:56            ^
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:29:56         raw.command = "rm";
13:29:56            ^
13:29:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:29:56         raw.args = Arrays.asList(path);
13:29:56            ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:29:57         final IObject link = linkClass.newInstance();
13:29:57                                       ^
13:29:57   where T is a type-variable:
13:29:57     T extends Object declared in class Class
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:29:57             originalLink.setChild(annotationClass.newInstance());
13:29:57                                                  ^
13:29:57   where T is a type-variable:
13:29:57     T extends Object declared in class Class
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:29:57         RoiResult r = svc.findByImage(id, new RoiOptions());
13:29:57                          ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:57         final RawAccessRequest request = new RawAccessRequest();
13:29:57               ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:57         final RawAccessRequest request = new RawAccessRequest();
13:29:57                                              ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:29:57         request.repoUuid = repo.root().getHash().getValue();
13:29:57                ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:29:57         request.command = "exists";
13:29:57                ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:29:57         request.args = Collections.singletonList(dirPath);
13:29:57                ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:57         final RawAccessRequest request = new RawAccessRequest();
13:29:57               ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:29:57         final RawAccessRequest request = new RawAccessRequest();
13:29:57                                              ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:29:57         request.repoUuid = repo.root().getHash().getValue();
13:29:57                ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:29:57         request.command = "exists";
13:29:57                ^
13:29:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:29:57         request.args = Collections.singletonList(dirName);
13:29:57                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
13:29:58                                      ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:29:58         final ImportJob importJob = new ImportJobI();
13:29:58               ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:29:58         final ImportJob importJob = new ImportJobI();
13:29:58                                         ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:29:58         importJob.setImageName(omero.rtypes.rstring(name));
13:29:58                  ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:29:58         importJob.setImageDescription(omero.rtypes.rstring(desc));
13:29:58                  ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:29:58         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:29:58         ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:29:58         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:29:58                           ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:29:58         final String savedName = sent.getImageName().getValue().toString();
13:29:58                                      ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:29:58         final String savedDesc = sent.getImageDescription().getValue().toString();
13:29:58                                      ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:29:58         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:29:58               ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:29:58         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:29:58                                               ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:29:58         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:29:58         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         RoiResult r = svc.findByImage(image.getId().getValue(),
13:29:58                          ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:29:58                                 ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:29:58                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:29:58                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:29:58                                 ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:29:58         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:29:58                                          ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:29:58                                 ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:29:58         table = svc.getTable(f.getId().getValue());
13:29:58                    ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         RoiResult r = svc.findByImage(image.getId().getValue(),
13:29:58                          ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:29:58                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:29:58         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:29:58                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:29:58         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:29:58                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:29:58         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:29:58                ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:29:58                   ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:29:58                                   ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:29:58                                    ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:29:58                                                    ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
13:29:58             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:29:58                                       ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:29:58                                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:29:58                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:29:58                                                         ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:29:58                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:29:58                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:29:58                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:29:58                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:29:58         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:29:58                                                        ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:29:58                 svc.getShapeStatsRestricted(
13:29:58                    ^
13:29:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:29:58         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:29:58                                        ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:29:59         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:29:59                                      ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:29:59         request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:29:59                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:29:59         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:29:59                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:29:59         request.typesToIgnore = Collections.singletonList("Annotation");
13:29:59                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:29:59                     request.typesToIgnore = Collections.singletonList("Annotation");
13:29:59                            ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:29:59         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:29:59                                      ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:29:59         p2.setRelatedTo(p1);
13:29:59           ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:29:59         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:29:59                                           ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:29:59         pixels1.setRelatedTo(pixels2);
13:29:59                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:29:59         Pixels pixels = pixels1.getRelatedTo();
13:29:59                                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:29:59         Assert.assertNull(pixels1.getRelatedTo());
13:29:59                                  ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:29:59         pixels1.setRelatedTo(pixels2);
13:29:59                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:29:59         Pixels pixels = pixels1.getRelatedTo();
13:29:59                                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:29:59         Assert.assertNull(pixels1.getRelatedTo());
13:29:59                                  ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:59         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:29:59                                 ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:59         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:29:59                ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:59         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:29:59                                 ^
13:29:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:29:59         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:29:59                ^
13:30:00 Note: Some input files use unchecked or unsafe operations.
13:30:00 Note: Recompile with -Xlint:unchecked for details.
13:30:00 92 warnings
13:30:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2109098706.tmp
13:30:00 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:30:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:30:00 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-ebd437d5f7-ice36-b70 :: integration :: Sun Sep 06 13:29:42 UTC 2026
13:30:00 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:30:00 :: publishing :: omero#OmeroJava-test
13:30:00 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-ebd437d5f7-ice36-b70.jar
13:30:00 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-ebd437d5f7-ice36-b70.xml
13:30:00 
13:30:00 build-eclipse:
13:30:00 No sub-builds to iterate on
13:30:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:30:01 
13:30:01 retrieve:
13:30:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:30:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:30:06 
13:30:06 prepare:
13:30:06 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:30:10 
13:30:10 release-clients:
13:30:10 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-ebd437d5f7-ice36-b70.zip
13:30:17 
13:30:17 release-zip:
13:30:17 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-ebd437d5f7-ice36-b70.zip
13:30:30 
13:30:30 BUILD SUCCESSFUL
13:30:30 Total time: 5 minutes 11 seconds
13:30:30 ++ '[' -d .git ']'
13:30:30 ++ python3 ./build.py release-src
13:30:31 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:30:32 
13:30:32 release-src-git:
13:30:32 Releasing openmicroscopy-5.6.3-677-ebd437d5f7-ice36-b70
13:30:34   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-ebd437d5f7-ice36-b70.zip
13:30:34   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-ebd437d5f7-ice36-b70-base.zip
13:30:35 
13:30:35 BUILD SUCCESSFUL
13:30:35 Total time: 4 seconds
13:30:35 ++ echo BUILD_NUMBER=70
13:30:35 ++ echo OMERO_BRANCH=merge_ci
13:30:35 ++ git_info
13:30:35 +++ git rev-parse HEAD
13:30:35 ++ HEAD=ebd437d5f75569da3c63c6937e51baa9ebbbf113
13:30:35 ++ git log --max-count=1 ebd437d5f75569da3c63c6937e51baa9ebbbf113
13:30:35 ++ sort
13:30:35 ++ env
13:30:35 Archiving artifacts
13:30:54 Finished: SUCCESS