23:34:36Started by upstream project "Trigger" build number 9323:34:36originally caused by:
23:34:36 Started by timer
23:34:36Running as SYSTEM
23:34:36Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:34:36The recommended git tool is: NONE
23:34:36No credentials specified
23:34:36 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:34:36Fetching changes from the remote Git repository
23:34:36 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:34:36Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:34:36 > git --version # timeout=10
23:34:36 > git --version # 'git version 2.52.0'
23:34:36 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:34:44 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:34:44Checking out Revision fc0ad25e3d3f7beb559704ef628c15e40909facc (origin/merge_ci)
23:34:44 > git config core.sparsecheckout # timeout=10
23:34:44 > git checkout -f fc0ad25e3d3f7beb559704ef628c15e40909facc # timeout=10
23:34:47Commit message: "Add version.properties to etc/omero.properties"
23:34:47 > git rev-list --no-walk 18978195abfbce76b56fd6193269dbf8ba1c12f7 # timeout=10
23:34:48Cleaning workspace
23:34:48 > git rev-parse --verify HEAD # timeout=10
23:34:48Resetting working tree
23:34:48 > git reset --hard # timeout=10
23:34:48 > git clean -fdx # timeout=10
23:35:50Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6623:35:50[OMERO-build] $ /bin/bash -xe /tmp/jenkins8470934671607657003.sh
23:35:50+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:35:50+ cd src
23:35:50+ export OMERO_BRANCH=merge_ci
23:35:50+ OMERO_BRANCH=merge_ci
23:35:50+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:35:50+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:36:39+ source /home/omero/settings.env
23:36:39++ OMERO_DB_HOST=pg
23:36:39++ OMERO_DB_USER=postgres
23:36:39++ OMERO_DB_PASS=
23:36:39++ OMERO_ROOT_PASS=omero
23:36:39++ OMERO_DATA_DIR=/OMERO
23:36:39++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:36:39+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:37:03+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:37:05Collecting zeroc-ice==3.6.5
23:37:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:37:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.6 MB/s eta 0:00:00
23:37:08Installing collected packages: zeroc-ice
23:37:12Successfully installed zeroc-ice-3.6.5
23:37:1223:37:12[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:37:12[notice] To update, run: python3.11 -m pip install --upgrade pip
23:37:12+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:37:13Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:37:14Collecting setuptools<66
23:37:14 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:37:14Collecting omero-py
23:37:14 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:37:14Collecting appdirs
23:37:15 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:37:15Collecting future
23:37:15 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:37:15Collecting numpy<3,>=2
23:37:16 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:37:16Collecting Pillow>=10.0.0
23:37:16 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:37:17Collecting PyYAML
23:37:17 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:37:17Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:37:17Collecting requests
23:37:17 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:37:17Collecting portalocker
23:37:17 Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
23:37:17Collecting charset_normalizer<4,>=2
23:37:18 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:37:18Collecting idna<4,>=2.5
23:37:18 Using cached idna-3.19-py3-none-any.whl (68 kB)
23:37:18Collecting urllib3<3,>=1.26
23:37:18 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
23:37:18Collecting certifi>=2023.5.7
23:37:18 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:37:18Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:37:20 Attempting uninstall: setuptools
23:37:20 Found existing installation: setuptools 65.5.1
23:37:20 Uninstalling setuptools-65.5.1:
23:37:21 Successfully uninstalled setuptools-65.5.1
23:38:27Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
23:38:2723:38:27[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:38:27[notice] To update, run: python3.11 -m pip install --upgrade pip
23:38:27+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:38:27++ deactivate nondestructive
23:38:27++ '[' -n '' ']'
23:38:27++ '[' -n '' ']'
23:38:27++ hash -r
23:38:27++ '[' -n '' ']'
23:38:27++ unset VIRTUAL_ENV
23:38:27++ unset VIRTUAL_ENV_PROMPT
23:38:27++ '[' '!' nondestructive = nondestructive ']'
23:38:27++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:38:27++ export VIRTUAL_ENV
23:38:27++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:38:27++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:38:27++ export PATH
23:38:27++ '[' -n '' ']'
23:38:27++ '[' -z '' ']'
23:38:27++ _OLD_VIRTUAL_PS1=
23:38:27++ PS1='(omero-virtualenv) '
23:38:27++ export PS1
23:38:27++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:38:27++ export VIRTUAL_ENV_PROMPT
23:38:27++ hash -r
23:38:27+ source docs/hudson/OMERO.sh
23:38:27++ set -e
23:38:27++ set -u
23:38:27++ set -x
23:38:27++ source docs/hudson/functions.sh
23:38:27++ echo Building merge_ci
23:38:27Building merge_ci
23:38:27++ python3 ./build.py build-dev release-all
23:38:28Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:38:2923:38:29check-ivy:
23:38:29Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:38:29Created dir: /home/omero/workspace/OMERO-build/src/target
23:38:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:38:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:38:3223:38:32build-scons:
23:38:32Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:38:34No sub-builds to iterate on
23:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:38:3523:38:35buildlist:
23:38:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:38:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:38:3523:38:35clean:
23:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:38:3723:38:37python-clean:
23:38:37WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:38:37/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-fc0ad25e3d-ice36-b75') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:38:37 warnings.warn(
23:38:37running clean
23:38:37Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:38:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:38:3823:38:38python-clean:
23:38:38WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:38:38/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-fc0ad25e3d-ice36-b75') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:38:38 warnings.warn(
23:38:38running clean
23:38:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:38:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:38:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:4123:38:41python-clean:
23:38:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:38:41/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-fc0ad25e3d-ice36-b75') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:38:41 warnings.warn(
23:38:41running clean
23:38:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:38:41Deleting directory /home/omero/workspace/OMERO-build/src/target
23:38:4223:38:42build-scons:
23:38:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:38:4423:38:44build:
23:38:44No sub-builds to iterate on
23:38:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:38:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:38:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:38:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:38:4623:38:46tools-init:
23:38:46no-op
23:38:4723:38:47retrieve:
23:38:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:38:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:41:2223:41:22prepare:
23:41:22Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:41:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:41:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:41:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:41:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:41:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:41:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:41:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:41:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:41:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:41:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:41:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:41:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:41:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:41:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:41:2323:41:23pre-compile:
23:41:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:41:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:41:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:41:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:41:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:41:4323:41:43compile:
23:41:43no-op
23:41:4423:41:44package:
23:41:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:41:5223:41:52install:
23:41:52:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-fc0ad25e3d-ice36-b75 :: integration :: Fri Sep 11 23:38:46 UTC 2026
23:41:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:41:52:: publishing :: omero#omero_client
23:41:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-fc0ad25e3d-ice36-b75/omero_client-5.6.3-677-fc0ad25e3d-ice36-b75.jar
23:41:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-fc0ad25e3d-ice36-b75/omero_client-5.6.3-677-fc0ad25e3d-ice36-b75.xml
23:41:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:41:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:41:5423:41:54retrieve:
23:41:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:41:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:41:55Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:41:5523:41:55dist:
23:41:55Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:41:55Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:41:55Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:41:55Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:41:56Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:41:56Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:41:56Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:41:57Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:41:57Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:41:5823:41:58copy-licenses:
23:41:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:41:58Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:41:58Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:41:5923:41:59copy-history:
23:41:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:41:5923:41:59copy-etc:
23:41:59Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:41:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:42:0023:42:00copy-sql:
23:42:00Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:43:1623:43:16copy-server:
23:43:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:43:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:43:2423:43:24copy-client:
23:43:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:43:32 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:43:32 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:43:3823:43:38update-version:
23:43:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:43:3823:43:38create-workdirs:
23:43:38Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:43:38Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:43:38Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:43:3823:43:38copy-luts:
23:43:38Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:43:38Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:43:3823:43:38test-compile:
23:43:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:43:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:43:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:43:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:43:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:43:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:43:41Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:43:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:43:4223:43:42testng-init:
23:43:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:43:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:43:5223:43:52,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:43:5223:43:52,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - No custom configurators were discovered as a service.
23:43:5223:43:52,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:43:5223:43:52,546 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:43:5223:43:52,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:43:5223:43:52,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:43:5223:43:52,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 15 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:43:5223:43:52,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:43:5223:43:52,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:43:5223:43:52,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:43:5223:43:52,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:43:5223:43:52,576 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@452d25ef - Resource [logback.xml] occurs multiple times on the classpath.
23:43:5223:43:52,576 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@452d25ef - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:43:5223:43:52,576 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@452d25ef - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:43:5223:43:52,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:43:5223:43:52,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:43:5223:43:52,826 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:43:5223:43:52,828 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6bf1cb6f - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:43:5223:43:52,828 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6bf1cb6f - Please move "immediateFlush" property into the enclosing appender.
23:43:5223:43:52,930 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6bf1cb6f - Setting the "immediateFlush" property of the enclosing appender to true
23:43:5223:43:52,931 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:43:5223:43:52,931 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:43:5223:43:52,931 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:43:5223:43:52,931 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:43:5223:43:52,931 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:43:5223:43:52,931 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:43:5223:43:52,932 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45f9c744 - End of configuration.
23:43:5223:43:52,934 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1da0256f - Registering current configuration as safe fallback point
23:43:5223:43:52,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2c1e93ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 371 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:43:5223:43:52lifecycle.test-compile:
23:43:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:43:53Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:43:53warning: [options] bootstrap class path not set in conjunction with -source 8
23:43:53warning: [options] source value 8 is obsolete and will be removed in a future release
23:43:53warning: [options] target value 8 is obsolete and will be removed in a future release
23:43:53warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:43:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:43:57import omero.grid.RawAccessRequest;
23:43:57 ^
23:43:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:43:58import omero.grid.RawAccessRequest;
23:43:58 ^
23:43:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:43:58import omero.grid.RawAccessRequest;
23:43:58 ^
23:43:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:43:58import omero.model.ImportJob;
23:43:58 ^
23:43:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:43:58import omero.model.ImportJobI;
23:43:58 ^
23:43:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:43:59 IObject link = (IObject) linkClass.newInstance();
23:43:59 ^
23:43:59 where T is a type-variable:
23:43:59 T extends Object declared in class Class
23:44:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:44:00 T copy = (T) obj.getClass().newInstance();
23:44:00 ^
23:44:00 where T is a type-variable:
23:44:00 T extends Object declared in class Class
23:44:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:44:00 RawAccessRequest raw = new RawAccessRequest();
23:44:00 ^
23:44:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:44:00 RawAccessRequest raw = new RawAccessRequest();
23:44:00 ^
23:44:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:44:00 raw.repoUuid = legacy.root().getHash().getValue();
23:44:00 ^
23:44:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:44:00 raw.command = "rm";
23:44:00 ^
23:44:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:44:00 raw.args = Arrays.asList(path);
23:44:00 ^
23:44:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:44:01 final IObject link = linkClass.newInstance();
23:44:01 ^
23:44:01 where T is a type-variable:
23:44:01 T extends Object declared in class Class
23:44:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:44:01 originalLink.setChild(annotationClass.newInstance());
23:44:01 ^
23:44:01 where T is a type-variable:
23:44:01 T extends Object declared in class Class
23:44:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:44:01 RoiResult r = svc.findByImage(id, new RoiOptions());
23:44:01 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:44:02 final RawAccessRequest request = new RawAccessRequest();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:44:02 final RawAccessRequest request = new RawAccessRequest();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:44:02 request.repoUuid = repo.root().getHash().getValue();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:44:02 request.command = "exists";
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:44:02 request.args = Collections.singletonList(dirPath);
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:44:02 final RawAccessRequest request = new RawAccessRequest();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:44:02 final RawAccessRequest request = new RawAccessRequest();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:44:02 request.repoUuid = repo.root().getHash().getValue();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:44:02 request.command = "exists";
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:44:02 request.args = Collections.singletonList(dirName);
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:44:02 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:44:02 final ImportJob importJob = new ImportJobI();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:44:02 final ImportJob importJob = new ImportJobI();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:44:02 importJob.setImageName(omero.rtypes.rstring(name));
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:44:02 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:44:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:44:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:44:02 final String savedName = sent.getImageName().getValue().toString();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:44:02 final String savedDesc = sent.getImageDescription().getValue().toString();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:44:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:44:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:44:02 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:44:02 ^
23:44:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:44:02 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:44:02 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 RoiResult r = svc.findByImage(image.getId().getValue(),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:44:03 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:44:03 table = svc.getTable(f.getId().getValue());
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 RoiResult r = svc.findByImage(image.getId().getValue(),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:44:03 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:44:03 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:44:03 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:44:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:44:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:44:03 svc.getShapeStatsRestricted(
23:44:03 ^
23:44:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:44:03 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:44:03 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:44:04 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:44:04 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:44:04 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:44:04 request.typesToIgnore = Collections.singletonList("Annotation");
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:44:04 request.typesToIgnore = Collections.singletonList("Annotation");
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:44:04 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:44:04 p2.setRelatedTo(p1);
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:44:04 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:44:04 pixels1.setRelatedTo(pixels2);
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:44:04 Pixels pixels = pixels1.getRelatedTo();
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:44:04 Assert.assertNull(pixels1.getRelatedTo());
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:44:04 pixels1.setRelatedTo(pixels2);
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:44:04 Pixels pixels = pixels1.getRelatedTo();
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:44:04 Assert.assertNull(pixels1.getRelatedTo());
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:04 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:44:04 ^
23:44:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:44:04 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:44:04 ^
23:44:05Note: Some input files use unchecked or unsafe operations.
23:44:05Note: Recompile with -Xlint:unchecked for details.
23:44:0592 warnings
23:44:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2004573816.tmp
23:44:05Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:44:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:44:05:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-fc0ad25e3d-ice36-b75 :: integration :: Fri Sep 11 23:43:41 UTC 2026
23:44:05 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:44:05:: publishing :: omero#OmeroJava-test
23:44:06 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-fc0ad25e3d-ice36-b75.jar
23:44:06 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-fc0ad25e3d-ice36-b75.xml
23:44:0623:44:06build-eclipse:
23:44:06No sub-builds to iterate on
23:44:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:44:0723:44:07retrieve:
23:44:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:44:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:44:1423:44:14prepare:
23:44:14Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:44:1923:44:19release-clients:
23:44:19Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-fc0ad25e3d-ice36-b75.zip
23:44:2623:44:26release-zip:
23:44:26Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75.zip
23:44:4123:44:41BUILD SUCCESSFUL
23:44:41Total time: 6 minutes 13 seconds
23:44:41++ '[' -d .git ']'
23:44:41++ python3 ./build.py release-src
23:44:41Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:44:4323:44:43release-src-git:
23:44:43Releasing openmicroscopy-5.6.3-677-fc0ad25e3d-ice36-b75
23:44:44 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-fc0ad25e3d-ice36-b75.zip
23:44:44 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-fc0ad25e3d-ice36-b75-base.zip
23:44:4623:44:46BUILD SUCCESSFUL
23:44:46Total time: 5 seconds
23:44:46++ echo BUILD_NUMBER=75
23:44:46++ echo OMERO_BRANCH=merge_ci
23:44:46++ git_info
23:44:46+++ git rev-parse HEAD
23:44:46++ HEAD=fc0ad25e3d3f7beb559704ef628c15e40909facc
23:44:46++ git log --max-count=1 fc0ad25e3d3f7beb559704ef628c15e40909facc
23:44:46++ env
23:44:46++ sort
23:44:46Archiving artifacts
23:45:05Finished: SUCCESS
