00:40:19Started by upstream project "Trigger" build number 10100:40:19originally caused by:
00:40:19 Started by timer
00:40:19Running as SYSTEM
00:40:19Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:40:19The recommended git tool is: NONE
00:40:19No credentials specified
00:40:19 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:40:19Fetching changes from the remote Git repository
00:40:19 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:40:19Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:40:19 > git --version # timeout=10
00:40:19 > git --version # 'git version 2.47.3'
00:40:19 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:40:22 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:40:22Checking out Revision 916cf8f1a7e6d5d9cdfb39c9f1a5e7d615e0f937 (origin/merge_ci)
00:40:22 > git config core.sparsecheckout # timeout=10
00:40:22 > git checkout -f 916cf8f1a7e6d5d9cdfb39c9f1a5e7d615e0f937 # timeout=10
00:40:22Commit message: "Add version.properties to etc/omero.properties"
00:40:22 > git rev-list --no-walk b8449a1d29d84debde1fc29901f18e2c585e6a62 # timeout=10
00:40:22Cleaning workspace
00:40:22 > git rev-parse --verify HEAD # timeout=10
00:40:22Resetting working tree
00:40:22 > git reset --hard # timeout=10
00:40:22 > git clean -fdx # timeout=10
00:40:23Copied 6 artifacts from "OMERO-python-superbuild-build" build number 7300:40:23[OMERO-build] $ /bin/bash -xe /tmp/jenkins17645437575247267877.sh
00:40:23+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
00:40:23+ cd src
00:40:23+ export OMERO_BRANCH=merge_ci
00:40:23+ OMERO_BRANCH=merge_ci
00:40:23+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:23+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:23+ source /home/omero/settings.env
00:40:23++ OMERO_DB_HOST=pg
00:40:23++ OMERO_DB_USER=postgres
00:40:23++ OMERO_DB_PASS=
00:40:23++ OMERO_ROOT_PASS=omero
00:40:23++ OMERO_DATA_DIR=/OMERO
00:40:23++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:40:23+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:26+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:40:27Collecting zeroc-ice==3.6.5
00:40:27 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:40:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
00:40:30Installing collected packages: zeroc-ice
00:40:31Successfully installed zeroc-ice-3.6.5
00:40:3100:40:31[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:40:31[notice] To update, run: python3.11 -m pip install --upgrade pip
00:40:31+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:40:31Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:40:32Collecting setuptools<66
00:40:32 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:40:32Collecting omero-py
00:40:32 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:40:32Collecting appdirs
00:40:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:40:32Collecting future
00:40:32 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:40:33Collecting numpy<3,>=2
00:40:33 Using cached numpy-2.4.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:40:34Collecting Pillow>=10.0.0
00:40:34 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:40:34Collecting PyYAML
00:40:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:40:34Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:40:34Collecting requests
00:40:34 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:40:35Collecting portalocker
00:40:35 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:40:35Collecting charset_normalizer<4,>=2
00:40:35 Using cached charset_normalizer-3.4.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (193 kB)
00:40:35Collecting idna<4,>=2.5
00:40:35 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:40:35Collecting urllib3<3,>=1.21.1
00:40:35 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:40:35Collecting certifi>=2017.4.17
00:40:35 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:40:35Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:40:36 Attempting uninstall: setuptools
00:40:36 Found existing installation: setuptools 65.5.1
00:40:36 Uninstalling setuptools-65.5.1:
00:40:36 Successfully uninstalled setuptools-65.5.1
00:40:41Successfully installed Pillow-12.1.1 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.5 future-1.0.0 idna-3.11 numpy-2.4.3 omero-py-5.22.0 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
00:40:4100:40:41[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:40:41[notice] To update, run: python3.11 -m pip install --upgrade pip
00:40:41+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:40:41++ deactivate nondestructive
00:40:41++ '[' -n '' ']'
00:40:41++ '[' -n '' ']'
00:40:41++ hash -r
00:40:41++ '[' -n '' ']'
00:40:41++ unset VIRTUAL_ENV
00:40:41++ unset VIRTUAL_ENV_PROMPT
00:40:41++ '[' '!' nondestructive = nondestructive ']'
00:40:41++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:41++ export VIRTUAL_ENV
00:40:41++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:40:41++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:40:41++ export PATH
00:40:41++ '[' -n '' ']'
00:40:41++ '[' -z '' ']'
00:40:41++ _OLD_VIRTUAL_PS1=
00:40:41++ PS1='(omero-virtualenv) '
00:40:41++ export PS1
00:40:41++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:40:41++ export VIRTUAL_ENV_PROMPT
00:40:41++ hash -r
00:40:41+ source docs/hudson/OMERO.sh
00:40:41++ set -e
00:40:41++ set -u
00:40:41++ set -x
00:40:41++ source docs/hudson/functions.sh
00:40:41++ echo Building merge_ci
00:40:41Building merge_ci
00:40:41++ python3 ./build.py build-dev release-all
00:40:41Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:4200:40:42check-ivy:
00:40:42Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:42Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4300:40:43build-scons:
00:40:43Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:43No sub-builds to iterate on
00:40:43Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:4300:40:43buildlist:
00:40:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4400:40:44clean:
00:40:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:4400:40:44python-clean:
00:40:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:44/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-916cf8f1a7-ice36-b77') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:44 warnings.warn(
00:40:44running clean
00:40:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:4400:40:44python-clean:
00:40:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:44/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-916cf8f1a7-ice36-b77') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:44 warnings.warn(
00:40:44running clean
00:40:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:4500:40:45python-clean:
00:40:45WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:45/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-916cf8f1a7-ice36-b77') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:45 warnings.warn(
00:40:45running clean
00:40:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:45Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:4500:40:45build-scons:
00:40:45Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:4500:40:45build:
00:40:45No sub-builds to iterate on
00:40:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:4500:40:45tools-init:
00:40:45no-op
00:40:4500:40:45retrieve:
00:40:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:3000:41:30prepare:
00:41:30Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:41:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:41:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:3000:41:30pre-compile:
00:41:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:3000:41:30compile:
00:41:30no-op
00:41:3000:41:30package:
00:41:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:41:3100:41:31install:
00:41:31:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-594-916cf8f1a7-ice36-b77 :: integration :: Wed Mar 11 00:40:45 UTC 2026
00:41:31 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:41:31:: publishing :: omero#omero_client
00:41:31 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-916cf8f1a7-ice36-b77/omero_client-5.6.3-594-916cf8f1a7-ice36-b77.jar
00:41:31 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-916cf8f1a7-ice36-b77/omero_client-5.6.3-594-916cf8f1a7-ice36-b77.xml
00:41:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:3100:41:31retrieve:
00:41:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:41:3100:41:31dist:
00:41:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:41:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:41:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:31Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:41:31Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:41:31Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:41:31Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:41:32Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:3200:41:32copy-licenses:
00:41:32Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:32Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:41:32Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:41:3200:41:32copy-history:
00:41:32Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:3200:41:32copy-etc:
00:41:32Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:32Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:41:3200:41:32copy-sql:
00:41:32Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:41:3900:41:39copy-server:
00:41:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:41:3900:41:39copy-client:
00:41:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:41:4000:41:40update-version:
00:41:40Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:4000:41:40create-workdirs:
00:41:40Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:40Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:40Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:41:4000:41:40copy-luts:
00:41:40Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:40Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:4000:41:40test-compile:
00:41:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:40Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:4100:41:41testng-init:
00:41:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:4400:41:44,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:41:4400:41:44,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - No custom configurators were discovered as a service.
00:41:4400:41:44,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:4400:41:44,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:4400:41:44,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:4400:41:44,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:4400:41:44,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:4400:41:44,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:4400:41:44,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:4400:41:44,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:4400:41:44,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:4400:41:44,368 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2656db92 - Resource [logback.xml] occurs multiple times on the classpath.
00:41:4400:41:44,368 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2656db92 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:4400:41:44,368 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2656db92 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:4400:41:44,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:4400:41:44,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:4400:41:44,587 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:4400:41:44,588 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@58649b7e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:4400:41:44,588 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@58649b7e - Please move "immediateFlush" property into the enclosing appender.
00:41:4400:41:44,643 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@58649b7e - Setting the "immediateFlush" property of the enclosing appender to true
00:41:4400:41:44,644 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:4400:41:44,644 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:4400:41:44,644 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:4400:41:44,644 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:4400:41:44,644 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:4400:41:44,644 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:4400:41:44,645 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6a75d12 - End of configuration.
00:41:4400:41:44,647 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30082a5e - Registering current configuration as safe fallback point
00:41:4400:41:44,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@646a5e76 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 280 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:4400:41:44lifecycle.test-compile:
00:41:44Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:44Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:45warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:46import omero.grid.RawAccessRequest;
00:41:46 ^
00:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:46import omero.grid.RawAccessRequest;
00:41:46 ^
00:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:46import omero.grid.RawAccessRequest;
00:41:46 ^
00:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:46import omero.model.ImportJob;
00:41:46 ^
00:41:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:46import omero.model.ImportJobI;
00:41:46 ^
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:47 IObject link = (IObject) linkClass.newInstance();
00:41:47 ^
00:41:47 where T is a type-variable:
00:41:47 T extends Object declared in class Class
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:47 T copy = (T) obj.getClass().newInstance();
00:41:47 ^
00:41:47 where T is a type-variable:
00:41:47 T extends Object declared in class Class
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:47 RawAccessRequest raw = new RawAccessRequest();
00:41:47 ^
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:47 RawAccessRequest raw = new RawAccessRequest();
00:41:47 ^
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:47 raw.repoUuid = legacy.root().getHash().getValue();
00:41:47 ^
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:47 raw.command = "rm";
00:41:47 ^
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:47 raw.args = Arrays.asList(path);
00:41:47 ^
00:41:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:47 final IObject link = linkClass.newInstance();
00:41:47 ^
00:41:47 where T is a type-variable:
00:41:47 T extends Object declared in class Class
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:48 originalLink.setChild(annotationClass.newInstance());
00:41:48 ^
00:41:48 where T is a type-variable:
00:41:48 T extends Object declared in class Class
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:48 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:48 final RawAccessRequest request = new RawAccessRequest();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:48 final RawAccessRequest request = new RawAccessRequest();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:48 request.repoUuid = repo.root().getHash().getValue();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:48 request.command = "exists";
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:48 request.args = Collections.singletonList(dirPath);
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:48 final RawAccessRequest request = new RawAccessRequest();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:48 final RawAccessRequest request = new RawAccessRequest();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:48 request.repoUuid = repo.root().getHash().getValue();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:48 request.command = "exists";
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:48 request.args = Collections.singletonList(dirName);
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:48 final ImportJob importJob = new ImportJobI();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:48 final ImportJob importJob = new ImportJobI();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:48 importJob.setImageName(omero.rtypes.rstring(name));
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:48 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:48 final String savedName = sent.getImageName().getValue().toString();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:48 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:48 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:48 ^
00:41:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:48 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:48 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:41:49 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:41:49 table = svc.getTable(f.getId().getValue());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:49 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:49 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
00:41:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:49 svc.getShapeStatsRestricted(
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:49 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:49 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:49 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:49 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:49 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:49 p2.setRelatedTo(p1);
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:49 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:49 pixels1.setRelatedTo(pixels2);
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:49 Pixels pixels = pixels1.getRelatedTo();
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:49 Assert.assertNull(pixels1.getRelatedTo());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:49 pixels1.setRelatedTo(pixels2);
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:49 Pixels pixels = pixels1.getRelatedTo();
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:49 Assert.assertNull(pixels1.getRelatedTo());
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:49 ^
00:41:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:49 ^
00:41:49Note: Some input files use unchecked or unsafe operations.
00:41:49Note: Recompile with -Xlint:unchecked for details.
00:41:4988 warnings
00:41:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_129117813.tmp
00:41:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:41:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:50:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-594-916cf8f1a7-ice36-b77 :: integration :: Wed Mar 11 00:41:40 UTC 2026
00:41:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:41:50:: publishing :: omero#OmeroJava-test
00:41:50 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-916cf8f1a7-ice36-b77.jar
00:41:50 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-916cf8f1a7-ice36-b77.xml
00:41:5000:41:50build-eclipse:
00:41:50No sub-builds to iterate on
00:41:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:5000:41:50retrieve:
00:41:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:5200:41:52prepare:
00:41:52Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:5300:41:53release-clients:
00:41:53Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-916cf8f1a7-ice36-b77.zip
00:41:5800:41:58release-zip:
00:41:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-916cf8f1a7-ice36-b77.zip
00:42:0800:42:08BUILD SUCCESSFUL
00:42:08Total time: 1 minute 26 seconds
00:42:08++ '[' -d .git ']'
00:42:08++ python3 ./build.py release-src
00:42:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:42:0800:42:08release-src-git:
00:42:08Releasing openmicroscopy-5.6.3-594-916cf8f1a7-ice36-b77
00:42:10 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-916cf8f1a7-ice36-b77.zip
00:42:10 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-916cf8f1a7-ice36-b77-base.zip
00:42:1100:42:11BUILD SUCCESSFUL
00:42:11Total time: 3 seconds
00:42:11++ echo BUILD_NUMBER=77
00:42:11++ echo OMERO_BRANCH=merge_ci
00:42:11++ git_info
00:42:11+++ git rev-parse HEAD
00:42:11++ HEAD=916cf8f1a7e6d5d9cdfb39c9f1a5e7d615e0f937
00:42:11++ git log --max-count=1 916cf8f1a7e6d5d9cdfb39c9f1a5e7d615e0f937
00:42:11++ env
00:42:11++ sort
00:42:11Archiving artifacts
00:42:27Finished: SUCCESS
