23:25:56Started by upstream project "Trigger" build number 9723:25:56originally caused by:
23:25:56 Started by timer
23:25:56Running as SYSTEM
23:25:56Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:25:56The recommended git tool is: NONE
23:25:56No credentials specified
23:25:56 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:25:56Fetching changes from the remote Git repository
23:25:56 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:25:56Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:25:56 > git --version # timeout=10
23:25:56 > git --version # 'git version 2.52.0'
23:25:56 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:26:01 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:26:01Checking out Revision b65443abc4433e7e88b39573111a2696d93db3a9 (origin/merge_ci)
23:26:01 > git config core.sparsecheckout # timeout=10
23:26:01 > git checkout -f b65443abc4433e7e88b39573111a2696d93db3a9 # timeout=10
23:26:18Commit message: "Add version.properties to etc/omero.properties"
23:26:18 > git rev-list --no-walk 9bcab194bcf77fc7dfb6719265127741b25ec876 # timeout=10
23:26:19Cleaning workspace
23:26:19 > git rev-parse --verify HEAD # timeout=10
23:26:19Resetting working tree
23:26:19 > git reset --hard # timeout=10
23:26:19 > git clean -fdx # timeout=10
23:26:55Copied 6 artifacts from "OMERO-python-superbuild-build" build number 7023:26:56[OMERO-build] $ /bin/bash -xe /tmp/jenkins17781879384841194792.sh
23:26:56+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:26:56+ cd src
23:26:56+ export OMERO_BRANCH=merge_ci
23:26:56+ OMERO_BRANCH=merge_ci
23:26:56+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:26:56+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:27:23+ source /home/omero/settings.env
23:27:23++ OMERO_DB_HOST=pg
23:27:23++ OMERO_DB_USER=postgres
23:27:23++ OMERO_DB_PASS=
23:27:23++ OMERO_ROOT_PASS=omero
23:27:23++ OMERO_DATA_DIR=/OMERO
23:27:23++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:27:23+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:27:43+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:27:44Collecting zeroc-ice==3.6.5
23:27:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:27:47 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.2 MB/s eta 0:00:00
23:27:47Installing collected packages: zeroc-ice
23:27:51Successfully installed zeroc-ice-3.6.5
23:27:5123:27:51[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:27:51[notice] To update, run: python3.11 -m pip install --upgrade pip
23:27:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:27:52Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:27:52Collecting setuptools<66
23:27:52 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:27:52Collecting omero-py
23:27:53 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:27:53Collecting appdirs
23:27:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:27:53Collecting future
23:27:53 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:27:53Collecting numpy<3,>=2
23:27:54 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:27:54Collecting Pillow>=10.0.0
23:27:54 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:27:54Collecting PyYAML
23:27:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:27:55Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:27:55Collecting requests
23:27:55 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:27:55Collecting portalocker
23:27:55 Using cached portalocker-4.3.2-py3-none-any.whl (128 kB)
23:27:55Collecting charset_normalizer<4,>=2
23:27:55 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:27:55Collecting idna<4,>=2.5
23:27:55 Using cached idna-3.19-py3-none-any.whl (68 kB)
23:27:56Collecting urllib3<3,>=1.26
23:27:56 Downloading urllib3-2.8.0-py3-none-any.whl (135 kB)
23:27:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 135.7/135.7 kB 2.2 MB/s eta 0:00:00
23:27:56Collecting certifi>=2023.5.7
23:27:56 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:27:56Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:27:57 Attempting uninstall: setuptools
23:27:57 Found existing installation: setuptools 65.5.1
23:27:58 Uninstalling setuptools-65.5.1:
23:27:58 Successfully uninstalled setuptools-65.5.1
23:28:52Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.2 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:28:5223:28:52[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:28:52[notice] To update, run: python3.11 -m pip install --upgrade pip
23:28:52+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:28:52++ deactivate nondestructive
23:28:52++ '[' -n '' ']'
23:28:52++ '[' -n '' ']'
23:28:52++ hash -r
23:28:52++ '[' -n '' ']'
23:28:52++ unset VIRTUAL_ENV
23:28:52++ unset VIRTUAL_ENV_PROMPT
23:28:52++ '[' '!' nondestructive = nondestructive ']'
23:28:52++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:28:52++ export VIRTUAL_ENV
23:28:52++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:28:52++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:28:52++ export PATH
23:28:52++ '[' -n '' ']'
23:28:52++ '[' -z '' ']'
23:28:52++ _OLD_VIRTUAL_PS1=
23:28:52++ PS1='(omero-virtualenv) '
23:28:52++ export PS1
23:28:52++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:28:52++ export VIRTUAL_ENV_PROMPT
23:28:52++ hash -r
23:28:52+ source docs/hudson/OMERO.sh
23:28:52++ set -e
23:28:52++ set -u
23:28:52++ set -x
23:28:52++ source docs/hudson/functions.sh
23:28:52++ echo Building merge_ci
23:28:52Building merge_ci
23:28:52++ python3 ./build.py build-dev release-all
23:28:52Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:28:5323:28:53check-ivy:
23:28:53Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:28:53Created dir: /home/omero/workspace/OMERO-build/src/target
23:28:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:28:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:28:5523:28:55build-scons:
23:28:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:28:57No sub-builds to iterate on
23:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:28:5823:28:58buildlist:
23:28:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:28:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:28:5823:28:58clean:
23:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:28:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:28:5923:28:59python-clean:
23:28:59WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:28:59/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-b65443abc4-ice36-b79') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:28:59 warnings.warn(
23:28:59running clean
23:28:59Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:29:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:29:0023:29:00python-clean:
23:29:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:29:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-b65443abc4-ice36-b79') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:29:00 warnings.warn(
23:29:00running clean
23:29:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:29:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:29:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:29:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:29:0223:29:02python-clean:
23:29:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:29:02/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-b65443abc4-ice36-b79') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:29:02 warnings.warn(
23:29:02running clean
23:29:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:29:02Deleting directory /home/omero/workspace/OMERO-build/src/target
23:29:0423:29:04build-scons:
23:29:04Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:29:0523:29:05build:
23:29:05No sub-builds to iterate on
23:29:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:29:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:29:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:29:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:29:0823:29:08tools-init:
23:29:08no-op
23:29:0823:29:08retrieve:
23:29:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:29:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:2623:31:26prepare:
23:31:26Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:31:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:31:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:31:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:31:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:31:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:31:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:31:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:31:2623:31:26pre-compile:
23:31:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:31:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:31:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:31:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:31:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:31:4423:31:44compile:
23:31:44no-op
23:31:4423:31:44package:
23:31:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:31:5023:31:50install:
23:31:50:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-b65443abc4-ice36-b79 :: integration :: Tue Sep 15 23:29:07 UTC 2026
23:31:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:31:50:: publishing :: omero#omero_client
23:31:50 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-b65443abc4-ice36-b79/omero_client-5.6.3-677-b65443abc4-ice36-b79.jar
23:31:50 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-b65443abc4-ice36-b79/omero_client-5.6.3-677-b65443abc4-ice36-b79.xml
23:31:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:5223:31:52retrieve:
23:31:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:52Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:31:5223:31:52dist:
23:31:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:31:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:31:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:31:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:31:53Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:31:53Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:31:54Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:31:54Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:31:55Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:31:5623:31:56copy-licenses:
23:31:56Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:31:56Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:31:56Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:31:5723:31:57copy-history:
23:31:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:31:5723:31:57copy-etc:
23:31:57Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:31:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:31:5723:31:57copy-sql:
23:31:57Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:32:3823:32:38copy-server:
23:32:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:32:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:32:4623:32:46copy-client:
23:32:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:32:54 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:32:54 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:33:0023:33:00update-version:
23:33:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:33:0023:33:00create-workdirs:
23:33:00Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:33:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:33:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:33:0023:33:00copy-luts:
23:33:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:33:00Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:33:0023:33:00test-compile:
23:33:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:33:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:33:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:33:03Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:33:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:33:0423:33:04testng-init:
23:33:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:33:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:1423:33:14,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:33:1423:33:14,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - No custom configurators were discovered as a service.
23:33:1423:33:14,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:33:1423:33:14,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:33:1423:33:14,684 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:33:1423:33:14,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:33:1423:33:14,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:33:1423:33:14,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:33:1423:33:14,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:33:1423:33:14,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:33:1423:33:14,694 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:33:1423:33:14,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2130262a - Resource [logback.xml] occurs multiple times on the classpath.
23:33:1423:33:14,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2130262a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:33:1423:33:14,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2130262a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:33:1423:33:14,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:33:1423:33:14,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:33:1423:33:14,917 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:33:1423:33:14,919 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@412dd71b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:33:1423:33:14,919 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@412dd71b - Please move "immediateFlush" property into the enclosing appender.
23:33:1423:33:14,978 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@412dd71b - Setting the "immediateFlush" property of the enclosing appender to true
23:33:1423:33:14,979 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:33:1423:33:14,979 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:33:1423:33:14,979 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:33:1423:33:14,979 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:33:1423:33:14,979 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:33:1423:33:14,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:33:1423:33:14,980 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@745061b9 - End of configuration.
23:33:1423:33:14,982 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@332f6402 - Registering current configuration as safe fallback point
23:33:1423:33:14,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46202302 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:33:1423:33:14lifecycle.test-compile:
23:33:14Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:33:15Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:33:15warning: [options] bootstrap class path not set in conjunction with -source 8
23:33:15warning: [options] source value 8 is obsolete and will be removed in a future release
23:33:15warning: [options] target value 8 is obsolete and will be removed in a future release
23:33:15warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:33:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:17import omero.grid.RawAccessRequest;
23:33:17 ^
23:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:18import omero.grid.RawAccessRequest;
23:33:18 ^
23:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:18import omero.grid.RawAccessRequest;
23:33:18 ^
23:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:33:18import omero.model.ImportJob;
23:33:18 ^
23:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:33:18import omero.model.ImportJobI;
23:33:18 ^
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:33:19 IObject link = (IObject) linkClass.newInstance();
23:33:19 ^
23:33:19 where T is a type-variable:
23:33:19 T extends Object declared in class Class
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:33:19 T copy = (T) obj.getClass().newInstance();
23:33:19 ^
23:33:19 where T is a type-variable:
23:33:19 T extends Object declared in class Class
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:19 RawAccessRequest raw = new RawAccessRequest();
23:33:19 ^
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:19 RawAccessRequest raw = new RawAccessRequest();
23:33:19 ^
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:33:19 raw.repoUuid = legacy.root().getHash().getValue();
23:33:19 ^
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:33:19 raw.command = "rm";
23:33:19 ^
23:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:33:19 raw.args = Arrays.asList(path);
23:33:19 ^
23:33:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:33:20 final IObject link = linkClass.newInstance();
23:33:20 ^
23:33:20 where T is a type-variable:
23:33:20 T extends Object declared in class Class
23:33:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:33:20 originalLink.setChild(annotationClass.newInstance());
23:33:20 ^
23:33:20 where T is a type-variable:
23:33:20 T extends Object declared in class Class
23:33:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:33:20 RoiResult r = svc.findByImage(id, new RoiOptions());
23:33:20 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:21 final RawAccessRequest request = new RawAccessRequest();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:21 final RawAccessRequest request = new RawAccessRequest();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:33:21 request.repoUuid = repo.root().getHash().getValue();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:33:21 request.command = "exists";
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:33:21 request.args = Collections.singletonList(dirPath);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:21 final RawAccessRequest request = new RawAccessRequest();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:33:21 final RawAccessRequest request = new RawAccessRequest();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:33:21 request.repoUuid = repo.root().getHash().getValue();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:33:21 request.command = "exists";
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:33:21 request.args = Collections.singletonList(dirName);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:33:21 final ImportJob importJob = new ImportJobI();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:33:21 final ImportJob importJob = new ImportJobI();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:33:21 importJob.setImageName(omero.rtypes.rstring(name));
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:33:21 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:33:21 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:33:21 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:33:21 final String savedName = sent.getImageName().getValue().toString();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:33:21 final String savedDesc = sent.getImageDescription().getValue().toString();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:33:21 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:33:21 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:33:21 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:33:21 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 RoiResult r = svc.findByImage(image.getId().getValue(),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:33:21 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:33:21 table = svc.getTable(f.getId().getValue());
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 RoiResult r = svc.findByImage(image.getId().getValue(),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:33:21 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:33:21 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:33:21 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:33:21 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:33:21 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:33:21 svc.getShapeStatsRestricted(
23:33:21 ^
23:33:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:33:21 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:33:21 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:33:22 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:33:22 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:33:22 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:33:22 request.typesToIgnore = Collections.singletonList("Annotation");
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:33:22 request.typesToIgnore = Collections.singletonList("Annotation");
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:33:22 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:33:22 p2.setRelatedTo(p1);
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:33:22 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:33:22 pixels1.setRelatedTo(pixels2);
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:33:22 Pixels pixels = pixels1.getRelatedTo();
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:33:22 Assert.assertNull(pixels1.getRelatedTo());
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:33:22 pixels1.setRelatedTo(pixels2);
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:33:22 Pixels pixels = pixels1.getRelatedTo();
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:33:22 Assert.assertNull(pixels1.getRelatedTo());
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:22 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:22 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:33:22 ^
23:33:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:33:22 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:33:22 ^
23:33:22Note: Some input files use unchecked or unsafe operations.
23:33:22Note: Recompile with -Xlint:unchecked for details.
23:33:2292 warnings
23:33:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_730817724.tmp
23:33:23Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:33:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:23:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-b65443abc4-ice36-b79 :: integration :: Tue Sep 15 23:33:03 UTC 2026
23:33:23 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:33:23:: publishing :: omero#OmeroJava-test
23:33:23 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-b65443abc4-ice36-b79.jar
23:33:23 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-b65443abc4-ice36-b79.xml
23:33:2323:33:23build-eclipse:
23:33:23No sub-builds to iterate on
23:33:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:33:2423:33:24retrieve:
23:33:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:33:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:2923:33:29prepare:
23:33:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:33:3523:33:35release-clients:
23:33:35Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-b65443abc4-ice36-b79.zip
23:33:4223:33:42release-zip:
23:33:42Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-b65443abc4-ice36-b79.zip
23:33:5623:33:56BUILD SUCCESSFUL
23:33:56Total time: 5 minutes 3 seconds
23:33:56++ '[' -d .git ']'
23:33:56++ python3 ./build.py release-src
23:33:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:33:5723:33:57release-src-git:
23:33:57Releasing openmicroscopy-5.6.3-677-b65443abc4-ice36-b79
23:33:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-b65443abc4-ice36-b79.zip
23:33:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-b65443abc4-ice36-b79-base.zip
23:34:0023:34:00BUILD SUCCESSFUL
23:34:00Total time: 4 seconds
23:34:00++ echo BUILD_NUMBER=79
23:34:00++ echo OMERO_BRANCH=merge_ci
23:34:00++ git_info
23:34:00+++ git rev-parse HEAD
23:34:00++ HEAD=b65443abc4433e7e88b39573111a2696d93db3a9
23:34:00++ git log --max-count=1 b65443abc4433e7e88b39573111a2696d93db3a9
23:34:00++ sort
23:34:00++ env
23:34:00Archiving artifacts
23:34:18Finished: SUCCESS
