08:59:32Started by upstream project "Trigger" build number 10008:59:32originally caused by:
08:59:32 Started by user devspace08:59:32Running as SYSTEM
08:59:32Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:59:32The recommended git tool is: NONE
08:59:32No credentials specified
08:59:32 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:59:32Fetching changes from the remote Git repository
08:59:32 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:59:32Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:59:32 > git --version # timeout=10
08:59:32 > git --version # 'git version 2.52.0'
08:59:32 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:59:40 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:59:40Checking out Revision 6e43949dc629825bf93b867120cb9e869ea17290 (origin/merge_ci)
08:59:40 > git config core.sparsecheckout # timeout=10
08:59:40 > git checkout -f 6e43949dc629825bf93b867120cb9e869ea17290 # timeout=10
08:59:43Commit message: "Add version.properties to etc/omero.properties"
08:59:43 > git rev-list --no-walk ce68b23783da9aae8ae0675e9577baa371e0b3ee # timeout=10
08:59:43Cleaning workspace
08:59:43 > git rev-parse --verify HEAD # timeout=10
08:59:43Resetting working tree
08:59:43 > git reset --hard # timeout=10
08:59:43 > git clean -fdx # timeout=10
09:00:36Copied 6 artifacts from "OMERO-python-superbuild-build" build number 7209:00:36[OMERO-build] $ /bin/bash -xe /tmp/jenkins4721083810509391384.sh
09:00:36+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:00:37+ cd src
09:00:37+ export OMERO_BRANCH=merge_ci
09:00:37+ OMERO_BRANCH=merge_ci
09:00:37+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:00:37+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:01:26+ source /home/omero/settings.env
09:01:26++ OMERO_DB_HOST=pg
09:01:26++ OMERO_DB_USER=postgres
09:01:26++ OMERO_DB_PASS=
09:01:26++ OMERO_ROOT_PASS=omero
09:01:26++ OMERO_DATA_DIR=/OMERO
09:01:26++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:01:26+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:01:48+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:01:49Collecting zeroc-ice==3.6.5
09:01:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:01:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.9 MB/s eta 0:00:00
09:01:52Installing collected packages: zeroc-ice
09:01:56Successfully installed zeroc-ice-3.6.5
09:01:5609:01:56[notice] A new release of pip available: 22.3.1 -> 26.2.1
09:01:56[notice] To update, run: python3.11 -m pip install --upgrade pip
09:01:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:01:57Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:01:57Collecting setuptools<66
09:01:57 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:01:57Collecting omero-py
09:01:57 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
09:01:57Collecting appdirs
09:01:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:01:58Collecting future
09:01:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:01:58Collecting numpy<3,>=2
09:01:58 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:01:59Collecting Pillow>=10.0.0
09:01:59 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:01:59Collecting PyYAML
09:01:59 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:01:59Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:02:00Collecting requests
09:02:00 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:02:00Collecting portalocker
09:02:00 Using cached portalocker-4.3.2-py3-none-any.whl (128 kB)
09:02:00Collecting charset_normalizer<4,>=2
09:02:00 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
09:02:00Collecting idna<4,>=2.5
09:02:00 Downloading idna-3.20-py3-none-any.whl (69 kB)
09:02:01 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 69.6/69.6 kB 1.3 MB/s eta 0:00:00
09:02:01Collecting urllib3<3,>=1.26
09:02:01 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
09:02:01Collecting certifi>=2023.5.7
09:02:01 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
09:02:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:02:02 Attempting uninstall: setuptools
09:02:02 Found existing installation: setuptools 65.5.1
09:02:03 Uninstalling setuptools-65.5.1:
09:02:04 Successfully uninstalled setuptools-65.5.1
09:02:58Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.2 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
09:02:5809:02:58[notice] A new release of pip available: 22.3.1 -> 26.2.1
09:02:58[notice] To update, run: python3.11 -m pip install --upgrade pip
09:02:59+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:02:59++ deactivate nondestructive
09:02:59++ '[' -n '' ']'
09:02:59++ '[' -n '' ']'
09:02:59++ hash -r
09:02:59++ '[' -n '' ']'
09:02:59++ unset VIRTUAL_ENV
09:02:59++ unset VIRTUAL_ENV_PROMPT
09:02:59++ '[' '!' nondestructive = nondestructive ']'
09:02:59++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:02:59++ export VIRTUAL_ENV
09:02:59++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:02:59++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:02:59++ export PATH
09:02:59++ '[' -n '' ']'
09:02:59++ '[' -z '' ']'
09:02:59++ _OLD_VIRTUAL_PS1=
09:02:59++ PS1='(omero-virtualenv) '
09:02:59++ export PS1
09:02:59++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:02:59++ export VIRTUAL_ENV_PROMPT
09:02:59++ hash -r
09:02:59+ source docs/hudson/OMERO.sh
09:02:59++ set -e
09:02:59++ set -u
09:02:59++ set -x
09:02:59++ source docs/hudson/functions.sh
09:02:59++ echo Building merge_ci
09:02:59Building merge_ci
09:02:59++ python3 ./build.py build-dev release-all
09:02:59Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:03:0109:03:01check-ivy:
09:03:01Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:03:01Created dir: /home/omero/workspace/OMERO-build/src/target
09:03:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:03:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:03:0309:03:03build-scons:
09:03:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:03:05No sub-builds to iterate on
09:03:05Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:03:0509:03:05buildlist:
09:03:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:03:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:03:0609:03:06clean:
09:03:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:03:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:03:0709:03:07python-clean:
09:03:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:03:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-680-6e43949dc6-ice36-b81') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:03:07 warnings.warn(
09:03:07running clean
09:03:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:03:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:03:0809:03:08python-clean:
09:03:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:03:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-680-6e43949dc6-ice36-b81') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:03:08 warnings.warn(
09:03:08running clean
09:03:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:03:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:03:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:03:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:03:0909:03:09python-clean:
09:03:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:03:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-680-6e43949dc6-ice36-b81') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:03:09 warnings.warn(
09:03:09running clean
09:03:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:03:10Deleting directory /home/omero/workspace/OMERO-build/src/target
09:03:1109:03:11build-scons:
09:03:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:03:1309:03:13build:
09:03:13No sub-builds to iterate on
09:03:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:03:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:03:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:03:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:03:1409:03:14tools-init:
09:03:14no-op
09:03:1509:03:15retrieve:
09:03:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:03:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:05:2409:05:24prepare:
09:05:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:05:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:05:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:05:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:05:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:05:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:05:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:05:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:05:2409:05:24pre-compile:
09:05:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:05:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:05:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:05:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:05:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:05:4009:05:40compile:
09:05:40no-op
09:05:4009:05:40package:
09:05:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:05:4409:05:44install:
09:05:44:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-680-6e43949dc6-ice36-b81 :: integration :: Fri Sep 18 09:03:14 UTC 2026
09:05:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:05:44:: publishing :: omero#omero_client
09:05:44 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-680-6e43949dc6-ice36-b81/omero_client-5.6.3-680-6e43949dc6-ice36-b81.jar
09:05:44 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-680-6e43949dc6-ice36-b81/omero_client-5.6.3-680-6e43949dc6-ice36-b81.xml
09:05:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:05:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:05:4509:05:45retrieve:
09:05:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:05:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:05:46Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:05:4609:05:46dist:
09:05:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:05:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:05:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:05:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:05:46Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:05:47Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:05:47Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:05:47Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:05:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:05:4909:05:49copy-licenses:
09:05:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:05:49Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:05:49Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:05:5009:05:50copy-history:
09:05:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:05:5009:05:50copy-etc:
09:05:50Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:05:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:05:5109:05:51copy-sql:
09:05:51Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:06:2709:06:27copy-server:
09:06:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:06:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
09:06:3409:06:34copy-client:
09:06:34Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:06:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:06:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
09:06:4709:06:47update-version:
09:06:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:06:4709:06:47create-workdirs:
09:06:47Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:06:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:06:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:06:4709:06:47copy-luts:
09:06:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:06:47Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:06:4709:06:47test-compile:
09:06:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:06:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:06:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:06:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:06:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:06:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:06:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:06:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:06:5109:06:51testng-init:
09:06:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:06:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:07:0209:07:02,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:07:0209:07:02,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - No custom configurators were discovered as a service.
09:07:0209:07:02,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:07:0209:07:02,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:07:0209:07:02,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:07:0209:07:02,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:07:0209:07:02,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 16 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:07:0209:07:02,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:07:0209:07:02,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:07:0209:07:02,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:07:0209:07:02,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:07:0209:07:02,371 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@f01e723 - Resource [logback.xml] occurs multiple times on the classpath.
09:07:0209:07:02,371 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@f01e723 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:07:0209:07:02,371 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@f01e723 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:07:0209:07:02,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:07:0209:07:02,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:07:0209:07:02,608 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:07:0209:07:02,610 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2b3d5c09 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:07:0209:07:02,610 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2b3d5c09 - Please move "immediateFlush" property into the enclosing appender.
09:07:0209:07:02,674 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2b3d5c09 - Setting the "immediateFlush" property of the enclosing appender to true
09:07:0209:07:02,674 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:07:0209:07:02,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:07:0209:07:02,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:07:0209:07:02,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:07:0209:07:02,675 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:07:0209:07:02,675 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:07:0209:07:02,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d609083 - End of configuration.
09:07:0209:07:02,678 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@74d294f4 - Registering current configuration as safe fallback point
09:07:0209:07:02,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2ff7685 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 322 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:07:0209:07:02lifecycle.test-compile:
09:07:02Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:07:02Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:07:03warning: [options] bootstrap class path not set in conjunction with -source 8
09:07:03warning: [options] source value 8 is obsolete and will be removed in a future release
09:07:03warning: [options] target value 8 is obsolete and will be removed in a future release
09:07:03warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
09:07:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:06import omero.grid.RawAccessRequest;
09:07:06 ^
09:07:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:06import omero.grid.RawAccessRequest;
09:07:06 ^
09:07:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:07import omero.grid.RawAccessRequest;
09:07:07 ^
09:07:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:07:07import omero.model.ImportJob;
09:07:07 ^
09:07:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:07:07import omero.model.ImportJobI;
09:07:07 ^
09:07:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
09:07:07 IObject link = (IObject) linkClass.newInstance();
09:07:07 ^
09:07:07 where T is a type-variable:
09:07:07 T extends Object declared in class Class
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:07:08 T copy = (T) obj.getClass().newInstance();
09:07:08 ^
09:07:08 where T is a type-variable:
09:07:08 T extends Object declared in class Class
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:08 RawAccessRequest raw = new RawAccessRequest();
09:07:08 ^
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:08 RawAccessRequest raw = new RawAccessRequest();
09:07:08 ^
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:07:08 raw.repoUuid = legacy.root().getHash().getValue();
09:07:08 ^
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:07:08 raw.command = "rm";
09:07:08 ^
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:07:08 raw.args = Arrays.asList(path);
09:07:08 ^
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:07:08 final IObject link = linkClass.newInstance();
09:07:08 ^
09:07:08 where T is a type-variable:
09:07:08 T extends Object declared in class Class
09:07:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:07:08 originalLink.setChild(annotationClass.newInstance());
09:07:08 ^
09:07:08 where T is a type-variable:
09:07:08 T extends Object declared in class Class
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:07:09 RoiResult r = svc.findByImage(id, new RoiOptions());
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:09 final RawAccessRequest request = new RawAccessRequest();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:09 final RawAccessRequest request = new RawAccessRequest();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:07:09 request.repoUuid = repo.root().getHash().getValue();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:07:09 request.command = "exists";
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:07:09 request.args = Collections.singletonList(dirPath);
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:09 final RawAccessRequest request = new RawAccessRequest();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:07:09 final RawAccessRequest request = new RawAccessRequest();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:07:09 request.repoUuid = repo.root().getHash().getValue();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:07:09 request.command = "exists";
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:07:09 request.args = Collections.singletonList(dirName);
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:07:09 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:07:09 final ImportJob importJob = new ImportJobI();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:07:09 final ImportJob importJob = new ImportJobI();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:07:09 importJob.setImageName(omero.rtypes.rstring(name));
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:07:09 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:07:09 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:07:09 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:07:09 final String savedName = sent.getImageName().getValue().toString();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:07:09 final String savedDesc = sent.getImageDescription().getValue().toString();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:07:09 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:07:09 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:07:09 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:07:09 ^
09:07:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:07:09 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:07:09 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 RoiResult r = svc.findByImage(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:07:10 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:07:10 table = svc.getTable(f.getId().getValue());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 RoiResult r = svc.findByImage(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:07:10 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:07:10 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
09:07:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:07:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:07:10 svc.getShapeStatsRestricted(
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:07:10 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:07:10 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:07:10 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:07:10 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:07:10 request.typesToIgnore = Collections.singletonList("Annotation");
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:07:10 request.typesToIgnore = Collections.singletonList("Annotation");
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:07:10 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:07:10 p2.setRelatedTo(p1);
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:07:10 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:07:10 pixels1.setRelatedTo(pixels2);
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:07:10 Pixels pixels = pixels1.getRelatedTo();
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:07:10 Assert.assertNull(pixels1.getRelatedTo());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:07:10 pixels1.setRelatedTo(pixels2);
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:07:10 Pixels pixels = pixels1.getRelatedTo();
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:07:10 Assert.assertNull(pixels1.getRelatedTo());
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:07:10 ^
09:07:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:07:10 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:07:10 ^
09:07:11Note: Some input files use unchecked or unsafe operations.
09:07:11Note: Recompile with -Xlint:unchecked for details.
09:07:1192 warnings
09:07:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_273224704.tmp
09:07:11Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:07:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:07:11:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-680-6e43949dc6-ice36-b81 :: integration :: Fri Sep 18 09:06:50 UTC 2026
09:07:11 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:07:11:: publishing :: omero#OmeroJava-test
09:07:11 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-680-6e43949dc6-ice36-b81.jar
09:07:11 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-680-6e43949dc6-ice36-b81.xml
09:07:1109:07:11build-eclipse:
09:07:11No sub-builds to iterate on
09:07:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:07:1209:07:12retrieve:
09:07:12:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:07:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:07:1709:07:17prepare:
09:07:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:07:2309:07:23release-clients:
09:07:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-680-6e43949dc6-ice36-b81.zip
09:07:3009:07:30release-zip:
09:07:30Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-680-6e43949dc6-ice36-b81.zip
09:07:4309:07:43BUILD SUCCESSFUL
09:07:43Total time: 4 minutes 43 seconds
09:07:43++ '[' -d .git ']'
09:07:43++ python3 ./build.py release-src
09:07:43Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:07:4409:07:44release-src-git:
09:07:44Releasing openmicroscopy-5.6.3-680-6e43949dc6-ice36-b81
09:07:46 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-680-6e43949dc6-ice36-b81.zip
09:07:46 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-680-6e43949dc6-ice36-b81-base.zip
09:07:4809:07:48BUILD SUCCESSFUL
09:07:48Total time: 4 seconds
09:07:48++ echo BUILD_NUMBER=81
09:07:48++ echo OMERO_BRANCH=merge_ci
09:07:48++ git_info
09:07:48+++ git rev-parse HEAD
09:07:48++ HEAD=6e43949dc629825bf93b867120cb9e869ea17290
09:07:48++ git log --max-count=1 6e43949dc629825bf93b867120cb9e869ea17290
09:07:48++ env
09:07:48++ sort
09:07:48Archiving artifacts
09:08:05Finished: SUCCESS
