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23:27:31 Started by upstream project "Trigger" build number 103
23:27:31 originally caused by:
23:27:31  Started by timer
23:27:31 Running as SYSTEM
23:27:31 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:27:31 The recommended git tool is: NONE
23:27:31 No credentials specified
23:27:31  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:27:31 Fetching changes from the remote Git repository
23:27:31  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:27:31 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
23:27:31  > git --version # timeout=10
23:27:31  > git --version # 'git version 2.52.0'
23:27:31  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:27:37  > git rev-parse origin/merge_ci^{commit} # timeout=10
23:27:37 Checking out Revision 83d3de66e374ee1eb1d1ecf44ac9c3bea5c2aee5 (origin/merge_ci)
23:27:37  > git config core.sparsecheckout # timeout=10
23:27:37  > git checkout -f 83d3de66e374ee1eb1d1ecf44ac9c3bea5c2aee5 # timeout=10
23:27:40 Commit message: "Add version.properties to etc/omero.properties"
23:27:40  > git rev-list --no-walk 6bb14ebd29ec9ff755a026a6391a6679553ff661 # timeout=10
23:27:40 Cleaning workspace
23:27:40  > git rev-parse --verify HEAD # timeout=10
23:27:40 Resetting working tree
23:27:40  > git reset --hard # timeout=10
23:27:40  > git clean -fdx # timeout=10
23:28:26 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 75
23:28:27 [OMERO-build] $ /bin/bash -xe /tmp/jenkins802133059679134916.sh
23:28:27 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:28:27 + cd src
23:28:27 + export OMERO_BRANCH=merge_ci
23:28:27 + OMERO_BRANCH=merge_ci
23:28:27 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:28:27 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:29:04 + source /home/omero/settings.env
23:29:04 ++ OMERO_DB_HOST=pg
23:29:04 ++ OMERO_DB_USER=postgres
23:29:04 ++ OMERO_DB_PASS=
23:29:04 ++ OMERO_ROOT_PASS=omero
23:29:04 ++ OMERO_DATA_DIR=/OMERO
23:29:04 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:29:04 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:29:24 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
23:29:25 Collecting zeroc-ice==3.6.5
23:29:26   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:29:28      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.2 MB/s eta 0:00:00
23:29:29 Installing collected packages: zeroc-ice
23:29:32 Successfully installed zeroc-ice-3.6.5
23:29:32 
23:29:32 [notice] A new release of pip available: 22.3.1 -> 26.2.1
23:29:32 [notice] To update, run: python3.11 -m pip install --upgrade pip
23:29:32 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:29:33 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:29:33 Collecting setuptools<66
23:29:33   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:29:34 Collecting omero-py
23:29:34   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:29:34 Collecting appdirs
23:29:34   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:29:34 Collecting future
23:29:34   Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:29:35 Collecting numpy<3,>=2
23:29:35   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:29:36 Collecting Pillow>=10.0.0
23:29:36   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:29:36 Collecting PyYAML
23:29:36   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:29:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:29:36 Collecting requests
23:29:36   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:29:36 Collecting portalocker
23:29:36   Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
23:29:37 Collecting charset_normalizer<4,>=2
23:29:37   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:29:37 Collecting idna<4,>=2.5
23:29:37   Using cached idna-3.20-py3-none-any.whl (69 kB)
23:29:37 Collecting urllib3<3,>=1.26
23:29:37   Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:29:37 Collecting certifi>=2023.5.7
23:29:37   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:29:37 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:29:38   Attempting uninstall: setuptools
23:29:38     Found existing installation: setuptools 65.5.1
23:29:39     Uninstalling setuptools-65.5.1:
23:29:40       Successfully uninstalled setuptools-65.5.1
23:30:32 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:30:32 
23:30:32 [notice] A new release of pip available: 22.3.1 -> 26.2.1
23:30:32 [notice] To update, run: python3.11 -m pip install --upgrade pip
23:30:32 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:30:32 ++ deactivate nondestructive
23:30:32 ++ '[' -n '' ']'
23:30:32 ++ '[' -n '' ']'
23:30:32 ++ hash -r
23:30:32 ++ '[' -n '' ']'
23:30:32 ++ unset VIRTUAL_ENV
23:30:32 ++ unset VIRTUAL_ENV_PROMPT
23:30:32 ++ '[' '!' nondestructive = nondestructive ']'
23:30:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:30:32 ++ export VIRTUAL_ENV
23:30:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:30:32 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:30:32 ++ export PATH
23:30:32 ++ '[' -n '' ']'
23:30:32 ++ '[' -z '' ']'
23:30:32 ++ _OLD_VIRTUAL_PS1=
23:30:32 ++ PS1='(omero-virtualenv) '
23:30:32 ++ export PS1
23:30:32 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:30:32 ++ export VIRTUAL_ENV_PROMPT
23:30:32 ++ hash -r
23:30:32 + source docs/hudson/OMERO.sh
23:30:32 ++ set -e
23:30:32 ++ set -u
23:30:32 ++ set -x
23:30:32 ++ source docs/hudson/functions.sh
23:30:32 ++ echo Building merge_ci
23:30:32 Building merge_ci
23:30:32 ++ python3 ./build.py build-dev release-all
23:30:33 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:30:34 
23:30:34 check-ivy:
23:30:34 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:30:34 Created dir: /home/omero/workspace/OMERO-build/src/target
23:30:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:36 
23:30:36 build-scons:
23:30:36 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:30:38 No sub-builds to iterate on
23:30:39 Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:30:39 
23:30:39 buildlist:
23:30:39 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:39 
23:30:39 clean:
23:30:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:40 
23:30:40 python-clean:
23:30:40 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:30:40 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-666-83d3de66e3-ice36-b84') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:30:40   warnings.warn(
23:30:40 running clean
23:30:40 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:30:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:30:41 
23:30:41 python-clean:
23:30:41 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:30:41 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-666-83d3de66e3-ice36-b84') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:30:41   warnings.warn(
23:30:42 running clean
23:30:42 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:30:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:30:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:43 
23:30:43 python-clean:
23:30:43 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:30:43 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-666-83d3de66e3-ice36-b84') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:30:43   warnings.warn(
23:30:43 running clean
23:30:43 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:30:43 Deleting directory /home/omero/workspace/OMERO-build/src/target
23:30:44 
23:30:44 build-scons:
23:30:44 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:30:48 
23:30:48 build:
23:30:48 No sub-builds to iterate on
23:30:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:30:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:30:50 
23:30:50 tools-init:
23:30:50 no-op
23:30:50 
23:30:50 retrieve:
23:30:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:09 
23:33:09 prepare:
23:33:09 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:33:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:33:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:33:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:33:09 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:09 
23:33:09 pre-compile:
23:33:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:23 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:23 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:25 
23:33:25 compile:
23:33:25 no-op
23:33:25 
23:33:25 package:
23:33:25 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:33:32 
23:33:32 install:
23:33:32 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-666-83d3de66e3-ice36-b84 :: integration :: Sun Sep 20 23:30:49 UTC 2026
23:33:32 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:33:32 :: publishing :: omero#omero_client
23:33:35 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-666-83d3de66e3-ice36-b84/omero_client-5.6.3-666-83d3de66e3-ice36-b84.jar
23:33:35 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-666-83d3de66e3-ice36-b84/omero_client-5.6.3-666-83d3de66e3-ice36-b84.xml
23:33:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:36 
23:33:36 retrieve:
23:33:36 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:33:36 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:37 Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:33:37 
23:33:37 dist:
23:33:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:33:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:33:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:33:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:33:37 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:33:37 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:33:37 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:33:38 Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:33:38 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:33:39 
23:33:39 copy-licenses:
23:33:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:33:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:33:39 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:33:40 
23:33:40 copy-history:
23:33:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:33:40 
23:33:40 copy-etc:
23:33:40 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:33:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:33:40 
23:33:40 copy-sql:
23:33:40 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:34:08 
23:34:08 copy-server:
23:34:08 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:34:08 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:34:15 
23:34:15 copy-client:
23:34:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:34:21 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:34:21 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:34:26 
23:34:26 update-version:
23:34:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:34:26 
23:34:26 create-workdirs:
23:34:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:34:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:34:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:34:26 
23:34:26 copy-luts:
23:34:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:34:26 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:34:27 
23:34:27 test-compile:
23:34:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:34:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:34:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:34:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:34:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:34:29 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:34:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:34:30 
23:34:30 testng-init:
23:34:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:34:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:42 23:34:42,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:34:42 23:34:42,546 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - No custom configurators were discovered as a service.
23:34:42 23:34:42,546 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:34:42 23:34:42,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:34:42 23:34:42,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:34:42 23:34:42,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:34:42 23:34:42,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:34:42 23:34:42,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:34:42 23:34:42,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:34:42 23:34:42,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:34:42 23:34:42,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:34:42 23:34:42,571 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@57f3ad72 - Resource [logback.xml] occurs multiple times on the classpath.
23:34:42 23:34:42,571 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@57f3ad72 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:34:42 23:34:42,571 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@57f3ad72 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:34:42 23:34:42,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:34:42 23:34:42,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:34:42 23:34:42,842 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:34:42 23:34:42,844 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3027ba9b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:34:42 23:34:42,844 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3027ba9b - Please move "immediateFlush" property into the enclosing appender.
23:34:42 23:34:42,906 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3027ba9b - Setting the "immediateFlush" property of the enclosing appender to true
23:34:42 23:34:42,907 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:34:42 23:34:42,907 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:34:42 23:34:42,907 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:34:42 23:34:42,907 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:34:42 23:34:42,907 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:34:42 23:34:42,907 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:34:42 23:34:42,908 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7b0be268 - End of configuration.
23:34:42 23:34:42,910 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48adcadf - Registering current configuration as safe fallback point
23:34:42 23:34:42,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@238212e4 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 349 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:34:42 
23:34:42 lifecycle.test-compile:
23:34:42 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:34:43 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:34:43 warning: [options] bootstrap class path not set in conjunction with -source 8
23:34:43 warning: [options] source value 8 is obsolete and will be removed in a future release
23:34:43 warning: [options] target value 8 is obsolete and will be removed in a future release
23:34:43 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:34:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:46 import omero.grid.RawAccessRequest;
23:34:46                  ^
23:34:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:46 import omero.grid.RawAccessRequest;
23:34:46                  ^
23:34:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:47 import omero.grid.RawAccessRequest;
23:34:47                  ^
23:34:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:47 import omero.model.ImportJob;
23:34:47                   ^
23:34:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:34:47 import omero.model.ImportJobI;
23:34:47                   ^
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:34:48         IObject link = (IObject) linkClass.newInstance();
23:34:48                                           ^
23:34:48   where T is a type-variable:
23:34:48     T extends Object declared in class Class
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:34:48         T copy = (T) obj.getClass().newInstance();
23:34:48                                    ^
23:34:48   where T is a type-variable:
23:34:48     T extends Object declared in class Class
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:48         RawAccessRequest raw = new RawAccessRequest();
23:34:48         ^
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:48         RawAccessRequest raw = new RawAccessRequest();
23:34:48                                    ^
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:34:48         raw.repoUuid = legacy.root().getHash().getValue();
23:34:48            ^
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:34:48         raw.command = "rm";
23:34:48            ^
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:34:48         raw.args = Arrays.asList(path);
23:34:48            ^
23:34:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:34:48         final IObject link = linkClass.newInstance();
23:34:48                                       ^
23:34:48   where T is a type-variable:
23:34:48     T extends Object declared in class Class
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:34:49             originalLink.setChild(annotationClass.newInstance());
23:34:49                                                  ^
23:34:49   where T is a type-variable:
23:34:49     T extends Object declared in class Class
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:49         RoiResult r = svc.findByImage(id, new RoiOptions());
23:34:49                          ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:49         final RawAccessRequest request = new RawAccessRequest();
23:34:49               ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:49         final RawAccessRequest request = new RawAccessRequest();
23:34:49                                              ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:34:49         request.repoUuid = repo.root().getHash().getValue();
23:34:49                ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:34:49         request.command = "exists";
23:34:49                ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:34:49         request.args = Collections.singletonList(dirPath);
23:34:49                ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:49         final RawAccessRequest request = new RawAccessRequest();
23:34:49               ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:49         final RawAccessRequest request = new RawAccessRequest();
23:34:49                                              ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:34:49         request.repoUuid = repo.root().getHash().getValue();
23:34:49                ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:34:49         request.command = "exists";
23:34:49                ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:34:49         request.args = Collections.singletonList(dirName);
23:34:49                ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:49             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:34:49                                      ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:49         final ImportJob importJob = new ImportJobI();
23:34:49               ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:34:49         final ImportJob importJob = new ImportJobI();
23:34:49                                         ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:34:49         importJob.setImageName(omero.rtypes.rstring(name));
23:34:49                  ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:34:49         importJob.setImageDescription(omero.rtypes.rstring(desc));
23:34:49                  ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:49         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:34:49         ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:49         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:34:49                           ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:34:49         final String savedName = sent.getImageName().getValue().toString();
23:34:49                                      ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:34:49         final String savedDesc = sent.getImageDescription().getValue().toString();
23:34:49                                      ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:49         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:34:49               ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:49         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:34:49                                               ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:34:49         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:34:49                                                        ^
23:34:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:34:49         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:34:49                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         RoiResult r = svc.findByImage(image.getId().getValue(),
23:34:50                          ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:50                                 ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:50                ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:50                ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:50                                 ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:34:50         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:34:50                                          ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:50                                 ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:34:50         table = svc.getTable(f.getId().getValue());
23:34:50                    ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         RoiResult r = svc.findByImage(image.getId().getValue(),
23:34:50                          ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:34:50                ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:34:50         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:34:50                ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:34:50         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:34:50                ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:34:50         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:34:50                ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:34:50                   ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:34:50                                   ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:34:50                                    ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:34:50                                                    ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:34:50             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:34:50                                       ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:34:50                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:34:50                                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:34:50                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:34:50                                                         ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:34:50                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:34:50                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:34:50                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:34:50                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:34:50                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:34:50                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:34:50                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:50         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:34:50                                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:34:50                 svc.getShapeStatsRestricted(
23:34:50                    ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:34:50         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:34:50                                        ^
23:34:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:50         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:34:50                                      ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:51         request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:34:51                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:51         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:34:51                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:51         request.typesToIgnore = Collections.singletonList("Annotation");
23:34:51                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:51                     request.typesToIgnore = Collections.singletonList("Annotation");
23:34:51                            ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:51         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:34:51                                      ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:51         p2.setRelatedTo(p1);
23:34:51           ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:51         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:34:51                                           ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:51         pixels1.setRelatedTo(pixels2);
23:34:51                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:51         Pixels pixels = pixels1.getRelatedTo();
23:34:51                                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:51         Assert.assertNull(pixels1.getRelatedTo());
23:34:51                                  ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:51         pixels1.setRelatedTo(pixels2);
23:34:51                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:51         Pixels pixels = pixels1.getRelatedTo();
23:34:51                                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:51         Assert.assertNull(pixels1.getRelatedTo());
23:34:51                                  ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:51         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:51                                 ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:51         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:51                ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:51         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:51                                 ^
23:34:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:51         l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:51                ^
23:34:51 Note: Some input files use unchecked or unsafe operations.
23:34:51 Note: Recompile with -Xlint:unchecked for details.
23:34:51 92 warnings
23:34:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1982442291.tmp
23:34:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:34:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:52 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-666-83d3de66e3-ice36-b84 :: integration :: Sun Sep 20 23:34:29 UTC 2026
23:34:52 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:34:52 :: publishing :: omero#OmeroJava-test
23:34:52 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-666-83d3de66e3-ice36-b84.jar
23:34:52 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-666-83d3de66e3-ice36-b84.xml
23:34:52 
23:34:52 build-eclipse:
23:34:52 No sub-builds to iterate on
23:34:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:34:53 
23:34:53 retrieve:
23:34:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:34:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:58 
23:34:58 prepare:
23:34:58 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:35:03 
23:35:03 release-clients:
23:35:03 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-666-83d3de66e3-ice36-b84.zip
23:35:10 
23:35:10 release-zip:
23:35:10 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-666-83d3de66e3-ice36-b84.zip
23:35:23 
23:35:23 BUILD SUCCESSFUL
23:35:23 Total time: 4 minutes 50 seconds
23:35:23 ++ '[' -d .git ']'
23:35:23 ++ python3 ./build.py release-src
23:35:24 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:35:25 
23:35:25 release-src-git:
23:35:25 Releasing openmicroscopy-5.6.3-666-83d3de66e3-ice36-b84
23:35:26   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-666-83d3de66e3-ice36-b84.zip
23:35:26   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-666-83d3de66e3-ice36-b84-base.zip
23:35:28 
23:35:28 BUILD SUCCESSFUL
23:35:28 Total time: 4 seconds
23:35:28 ++ echo BUILD_NUMBER=84
23:35:28 ++ echo OMERO_BRANCH=merge_ci
23:35:28 ++ git_info
23:35:28 +++ git rev-parse HEAD
23:35:28 ++ HEAD=83d3de66e374ee1eb1d1ecf44ac9c3bea5c2aee5
23:35:28 ++ git log --max-count=1 83d3de66e374ee1eb1d1ecf44ac9c3bea5c2aee5
23:35:28 ++ env
23:35:28 ++ sort
23:35:28 Archiving artifacts
23:35:46 Finished: SUCCESS