23:27:44Started by upstream project "Trigger" build number 10823:27:44originally caused by:
23:27:44 Started by timer
23:27:44Running as SYSTEM
23:27:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:27:44The recommended git tool is: NONE
23:27:44No credentials specified
23:27:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:27:44Fetching changes from the remote Git repository
23:27:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:27:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:27:44 > git --version # timeout=10
23:27:44 > git --version # 'git version 2.52.0'
23:27:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:27:50 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:27:50Checking out Revision 56c3d562aae767981c2f545b93037aeefcd153f5 (origin/merge_ci)
23:27:50 > git config core.sparsecheckout # timeout=10
23:27:50 > git checkout -f 56c3d562aae767981c2f545b93037aeefcd153f5 # timeout=10
23:27:52Commit message: "Add version.properties to etc/omero.properties"
23:27:52 > git rev-list --no-walk 24f3db0f50fc4a2affb9157d961db59a01cedc4b # timeout=10
23:27:53Cleaning workspace
23:27:53 > git rev-parse --verify HEAD # timeout=10
23:27:53Resetting working tree
23:27:53 > git reset --hard # timeout=10
23:27:53 > git clean -fdx # timeout=10
23:28:44Copied 6 artifacts from "OMERO-python-superbuild-build" build number 7823:28:44[OMERO-build] $ /bin/bash -xe /tmp/jenkins10307181945014704106.sh
23:28:44+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:28:44+ cd src
23:28:44+ export OMERO_BRANCH=merge_ci
23:28:44+ OMERO_BRANCH=merge_ci
23:28:44+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:28:44+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:29:22+ source /home/omero/settings.env
23:29:22++ OMERO_DB_HOST=pg
23:29:22++ OMERO_DB_USER=postgres
23:29:22++ OMERO_DB_PASS=
23:29:22++ OMERO_ROOT_PASS=omero
23:29:22++ OMERO_DATA_DIR=/OMERO
23:29:22++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:29:22+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:29:42+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:29:43Collecting zeroc-ice==3.6.5
23:29:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:29:47 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.9 MB/s eta 0:00:00
23:29:47Installing collected packages: zeroc-ice
23:29:51Successfully installed zeroc-ice-3.6.5
23:29:5123:29:51[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:29:51[notice] To update, run: python3.11 -m pip install --upgrade pip
23:29:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:29:52Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:29:52Collecting setuptools<66
23:29:52 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:29:52Collecting omero-py
23:29:53 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:29:53Collecting appdirs
23:29:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:29:53Collecting future
23:29:53 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:29:54Collecting numpy<3,>=2
23:29:54 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:29:54Collecting Pillow>=10.0.0
23:29:54 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:29:55Collecting PyYAML
23:29:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:29:55Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:29:55Collecting requests
23:29:55 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:29:55Collecting portalocker
23:29:55 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
23:29:55Collecting charset_normalizer<4,>=2
23:29:55 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:29:56Collecting idna<4,>=2.5
23:29:56 Using cached idna-3.20-py3-none-any.whl (69 kB)
23:29:56Collecting urllib3<3,>=1.26
23:29:56 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:29:56Collecting certifi>=2023.5.7
23:29:56 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:29:56Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:29:57 Attempting uninstall: setuptools
23:29:57 Found existing installation: setuptools 65.5.1
23:29:58 Uninstalling setuptools-65.5.1:
23:29:58 Successfully uninstalled setuptools-65.5.1
23:30:54Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:30:5423:30:54[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:30:54[notice] To update, run: python3.11 -m pip install --upgrade pip
23:30:55+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:30:55++ deactivate nondestructive
23:30:55++ '[' -n '' ']'
23:30:55++ '[' -n '' ']'
23:30:55++ hash -r
23:30:55++ '[' -n '' ']'
23:30:55++ unset VIRTUAL_ENV
23:30:55++ unset VIRTUAL_ENV_PROMPT
23:30:55++ '[' '!' nondestructive = nondestructive ']'
23:30:55++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:30:55++ export VIRTUAL_ENV
23:30:55++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:30:55++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:30:55++ export PATH
23:30:55++ '[' -n '' ']'
23:30:55++ '[' -z '' ']'
23:30:55++ _OLD_VIRTUAL_PS1=
23:30:55++ PS1='(omero-virtualenv) '
23:30:55++ export PS1
23:30:55++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:30:55++ export VIRTUAL_ENV_PROMPT
23:30:55++ hash -r
23:30:55+ source docs/hudson/OMERO.sh
23:30:55++ set -e
23:30:55++ set -u
23:30:55++ set -x
23:30:55++ source docs/hudson/functions.sh
23:30:55++ echo Building merge_ci
23:30:55Building merge_ci
23:30:55++ python3 ./build.py build-dev release-all
23:30:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:30:5723:30:57check-ivy:
23:31:00Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:31:00Created dir: /home/omero/workspace/OMERO-build/src/target
23:31:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:0023:31:00build-scons:
23:31:00Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:31:01No sub-builds to iterate on
23:31:02Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:31:0223:31:02buildlist:
23:31:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:0223:31:02clean:
23:31:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:31:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:31:0323:31:03python-clean:
23:31:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:31:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-56c3d562aa-ice36-b87') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:31:03 warnings.warn(
23:31:03running clean
23:31:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:31:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:31:0523:31:05python-clean:
23:31:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:31:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-56c3d562aa-ice36-b87') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:31:05 warnings.warn(
23:31:05running clean
23:31:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:31:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:0723:31:07python-clean:
23:31:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:31:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-687-56c3d562aa-ice36-b87') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:31:07 warnings.warn(
23:31:07running clean
23:31:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:31:07Deleting directory /home/omero/workspace/OMERO-build/src/target
23:31:0823:31:08build-scons:
23:31:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:31:1023:31:10build:
23:31:10No sub-builds to iterate on
23:31:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:31:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:31:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:31:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:31:1123:31:11tools-init:
23:31:11no-op
23:31:1223:31:12retrieve:
23:31:12:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:2923:33:29prepare:
23:33:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:33:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:33:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:33:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:33:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:33:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:33:2923:33:29pre-compile:
23:33:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:33:4523:33:45compile:
23:33:45no-op
23:33:4623:33:46package:
23:33:46Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:33:5123:33:51install:
23:33:51:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-687-56c3d562aa-ice36-b87 :: integration :: Thu Sep 24 23:31:11 UTC 2026
23:33:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:33:51:: publishing :: omero#omero_client
23:33:51 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-687-56c3d562aa-ice36-b87/omero_client-5.6.3-687-56c3d562aa-ice36-b87.jar
23:33:51 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-687-56c3d562aa-ice36-b87/omero_client-5.6.3-687-56c3d562aa-ice36-b87.xml
23:33:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:5223:33:52retrieve:
23:33:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:33:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:53Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:33:5323:33:53dist:
23:33:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:33:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:33:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:33:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:33:54Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:33:54Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:33:55Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:33:55Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:33:56Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:33:5723:33:57copy-licenses:
23:33:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:33:57Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:33:57Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:33:5723:33:57copy-history:
23:33:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:33:5723:33:57copy-etc:
23:33:57Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:33:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:33:5823:33:58copy-sql:
23:33:58Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:34:2523:34:25copy-server:
23:34:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:34:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:34:3323:34:33copy-client:
23:34:33Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:34:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:34:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:34:4723:34:47update-version:
23:34:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:34:4723:34:47create-workdirs:
23:34:47Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:34:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:34:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:34:4723:34:47copy-luts:
23:34:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:34:47Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:34:4723:34:47test-compile:
23:34:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:34:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:34:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:34:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:34:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:34:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:34:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:34:5123:34:51testng-init:
23:34:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:34:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:0223:35:02,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:35:0223:35:02,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - No custom configurators were discovered as a service.
23:35:0223:35:02,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:35:0223:35:02,585 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:35:0223:35:02,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:35:0223:35:02,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:35:0223:35:02,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 12 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:35:0223:35:02,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:35:0223:35:02,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:35:0223:35:02,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:35:0223:35:02,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:35:0223:35:02,609 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2ff7685 - Resource [logback.xml] occurs multiple times on the classpath.
23:35:0223:35:02,609 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2ff7685 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:35:0223:35:02,609 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2ff7685 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:35:0223:35:02,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:35:0223:35:02,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:35:0223:35:02,846 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:35:0223:35:02,848 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@f01e723 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:35:0223:35:02,848 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@f01e723 - Please move "immediateFlush" property into the enclosing appender.
23:35:0223:35:02,910 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@f01e723 - Setting the "immediateFlush" property of the enclosing appender to true
23:35:0223:35:02,910 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:35:0223:35:02,911 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:35:0223:35:02,911 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:35:0223:35:02,911 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:35:0223:35:02,911 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:35:0223:35:02,911 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:35:0223:35:02,912 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2b3d5c09 - End of configuration.
23:35:0223:35:02,914 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@d609083 - Registering current configuration as safe fallback point
23:35:0223:35:02,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48adcadf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 315 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:35:0223:35:02lifecycle.test-compile:
23:35:02Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:35:03Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:35:03warning: [options] bootstrap class path not set in conjunction with -source 8
23:35:03warning: [options] source value 8 is obsolete and will be removed in a future release
23:35:03warning: [options] target value 8 is obsolete and will be removed in a future release
23:35:03warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:35:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:06import omero.grid.RawAccessRequest;
23:35:06 ^
23:35:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:06import omero.grid.RawAccessRequest;
23:35:06 ^
23:35:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:06import omero.grid.RawAccessRequest;
23:35:06 ^
23:35:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:35:06import omero.model.ImportJob;
23:35:06 ^
23:35:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:35:06import omero.model.ImportJobI;
23:35:06 ^
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:35:08 IObject link = (IObject) linkClass.newInstance();
23:35:08 ^
23:35:08 where T is a type-variable:
23:35:08 T extends Object declared in class Class
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:35:08 T copy = (T) obj.getClass().newInstance();
23:35:08 ^
23:35:08 where T is a type-variable:
23:35:08 T extends Object declared in class Class
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:08 RawAccessRequest raw = new RawAccessRequest();
23:35:08 ^
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:08 RawAccessRequest raw = new RawAccessRequest();
23:35:08 ^
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:35:08 raw.repoUuid = legacy.root().getHash().getValue();
23:35:08 ^
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:35:08 raw.command = "rm";
23:35:08 ^
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:35:08 raw.args = Arrays.asList(path);
23:35:08 ^
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:35:08 final IObject link = linkClass.newInstance();
23:35:08 ^
23:35:08 where T is a type-variable:
23:35:08 T extends Object declared in class Class
23:35:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:35:08 originalLink.setChild(annotationClass.newInstance());
23:35:08 ^
23:35:08 where T is a type-variable:
23:35:08 T extends Object declared in class Class
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:35:09 RoiResult r = svc.findByImage(id, new RoiOptions());
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:09 final RawAccessRequest request = new RawAccessRequest();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:09 final RawAccessRequest request = new RawAccessRequest();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:35:09 request.repoUuid = repo.root().getHash().getValue();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:35:09 request.command = "exists";
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:35:09 request.args = Collections.singletonList(dirPath);
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:09 final RawAccessRequest request = new RawAccessRequest();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:35:09 final RawAccessRequest request = new RawAccessRequest();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:35:09 request.repoUuid = repo.root().getHash().getValue();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:35:09 request.command = "exists";
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:35:09 request.args = Collections.singletonList(dirName);
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:35:09 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:35:09 final ImportJob importJob = new ImportJobI();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:35:09 final ImportJob importJob = new ImportJobI();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:35:09 importJob.setImageName(omero.rtypes.rstring(name));
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:35:09 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:35:09 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:35:09 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:35:09 final String savedName = sent.getImageName().getValue().toString();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:35:09 final String savedDesc = sent.getImageDescription().getValue().toString();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:35:09 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:35:09 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:35:09 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:35:09 ^
23:35:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:35:09 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:35:09 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 RoiResult r = svc.findByImage(image.getId().getValue(),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:35:10 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:35:10 table = svc.getTable(f.getId().getValue());
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 RoiResult r = svc.findByImage(image.getId().getValue(),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:35:10 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:35:10 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:35:10 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:35:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:35:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:35:10 svc.getShapeStatsRestricted(
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:35:10 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:35:10 ^
23:35:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:35:10 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:35:10 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:35:11 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:35:11 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:35:11 request.typesToIgnore = Collections.singletonList("Annotation");
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:35:11 request.typesToIgnore = Collections.singletonList("Annotation");
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:35:11 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:35:11 p2.setRelatedTo(p1);
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:35:11 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:35:11 pixels1.setRelatedTo(pixels2);
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:35:11 Pixels pixels = pixels1.getRelatedTo();
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:35:11 Assert.assertNull(pixels1.getRelatedTo());
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:35:11 pixels1.setRelatedTo(pixels2);
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:35:11 Pixels pixels = pixels1.getRelatedTo();
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:35:11 Assert.assertNull(pixels1.getRelatedTo());
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:11 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:35:11 ^
23:35:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:35:11 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:35:11 ^
23:35:11Note: Some input files use unchecked or unsafe operations.
23:35:11Note: Recompile with -Xlint:unchecked for details.
23:35:1192 warnings
23:35:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_16010385.tmp
23:35:11Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:35:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:12:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-687-56c3d562aa-ice36-b87 :: integration :: Thu Sep 24 23:34:50 UTC 2026
23:35:12 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:35:12:: publishing :: omero#OmeroJava-test
23:35:12 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-687-56c3d562aa-ice36-b87.jar
23:35:12 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-687-56c3d562aa-ice36-b87.xml
23:35:1223:35:12build-eclipse:
23:35:12No sub-builds to iterate on
23:35:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:35:1323:35:13retrieve:
23:35:13:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:35:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:1923:35:19prepare:
23:35:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:35:2323:35:23release-clients:
23:35:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-687-56c3d562aa-ice36-b87.zip
23:35:3123:35:31release-zip:
23:35:31Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-687-56c3d562aa-ice36-b87.zip
23:35:4523:35:45BUILD SUCCESSFUL
23:35:45Total time: 4 minutes 49 seconds
23:35:45++ '[' -d .git ']'
23:35:45++ python3 ./build.py release-src
23:35:45Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:35:4623:35:46release-src-git:
23:35:46Releasing openmicroscopy-5.6.3-687-56c3d562aa-ice36-b87
23:35:48 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-687-56c3d562aa-ice36-b87.zip
23:35:48 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-687-56c3d562aa-ice36-b87-base.zip
23:35:4923:35:49BUILD SUCCESSFUL
23:35:49Total time: 4 seconds
23:35:49++ echo BUILD_NUMBER=87
23:35:49++ echo OMERO_BRANCH=merge_ci
23:35:49++ git_info
23:35:49+++ git rev-parse HEAD
23:35:49++ HEAD=56c3d562aae767981c2f545b93037aeefcd153f5
23:35:49++ git log --max-count=1 56c3d562aae767981c2f545b93037aeefcd153f5
23:35:49++ sort
23:35:49++ env
23:35:49Archiving artifacts
23:36:07Finished: SUCCESS
