09:51:14Started by upstream project "Trigger" build number 1409:51:14originally caused by:
09:51:14 Started by user devspace09:51:14Running as SYSTEM
09:51:14Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:51:14The recommended git tool is: NONE
09:51:14No credentials specified
09:51:14 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:51:14Fetching changes from the remote Git repository
09:51:14 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:51:15Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:51:15 > git --version # timeout=10
09:51:15 > git --version # 'git version 2.52.0'
09:51:15 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:51:18 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:51:18Checking out Revision 8dd2d4ecba432907d232f84470ae2ae88f53ab42 (origin/merge_ci)
09:51:18 > git config core.sparsecheckout # timeout=10
09:51:18 > git checkout -f 8dd2d4ecba432907d232f84470ae2ae88f53ab42 # timeout=10
09:51:31Commit message: "Add version.properties to etc/omero.properties"
09:51:31 > git rev-list --no-walk b0d2e0b22b6b155c0b62d46388b062270c212c34 # timeout=10
09:51:31Cleaning workspace
09:51:31 > git rev-parse --verify HEAD # timeout=10
09:51:31Resetting working tree
09:51:31 > git reset --hard # timeout=10
09:51:32 > git clean -fdx # timeout=10
09:51:59Copied 6 artifacts from "OMERO-python-superbuild-build" build number 809:51:59[OMERO-build] $ /bin/bash -xe /tmp/jenkins15954127009021235263.sh
09:51:59+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:51:59+ cd src
09:51:59+ export OMERO_BRANCH=merge_ci
09:51:59+ OMERO_BRANCH=merge_ci
09:51:59+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:51:59+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:52:27+ source /home/omero/settings.env
09:52:27++ OMERO_DB_HOST=pg
09:52:27++ OMERO_DB_USER=postgres
09:52:27++ OMERO_DB_PASS=
09:52:27++ OMERO_ROOT_PASS=omero
09:52:27++ OMERO_DATA_DIR=/OMERO
09:52:27++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:52:27+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:52:45+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:52:46Collecting zeroc-ice==3.6.5
09:52:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:52:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
09:52:50Installing collected packages: zeroc-ice
09:52:53Successfully installed zeroc-ice-3.6.5
09:52:5309:52:53[notice] A new release of pip available: 22.3.1 -> 26.1.2
09:52:53[notice] To update, run: python3.11 -m pip install --upgrade pip
09:52:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:52:54Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:52:54Collecting setuptools<66
09:52:54 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:52:55Collecting omero-py
09:52:55 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
09:52:55Collecting appdirs
09:52:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:52:55Collecting future
09:52:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:52:56Collecting numpy<3,>=2
09:52:56 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:52:56Collecting Pillow>=10.0.0
09:52:56 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:52:57Collecting PyYAML
09:52:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:52:57Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:52:57Collecting requests
09:52:57 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:52:57Collecting portalocker
09:52:57 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:52:57Collecting charset_normalizer<4,>=2
09:52:57 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
09:52:57Collecting idna<4,>=2.5
09:52:57 Using cached idna-3.18-py3-none-any.whl (65 kB)
09:52:58Collecting urllib3<3,>=1.26
09:52:58 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
09:52:58Collecting certifi>=2023.5.7
09:52:58 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
09:52:58Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:52:59 Attempting uninstall: setuptools
09:52:59 Found existing installation: setuptools 65.5.1
09:52:59 Uninstalling setuptools-65.5.1:
09:53:00 Successfully uninstalled setuptools-65.5.1
09:53:49Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
09:53:4909:53:49[notice] A new release of pip available: 22.3.1 -> 26.1.2
09:53:49[notice] To update, run: python3.11 -m pip install --upgrade pip
09:53:49+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:53:49++ deactivate nondestructive
09:53:49++ '[' -n '' ']'
09:53:49++ '[' -n '' ']'
09:53:49++ hash -r
09:53:49++ '[' -n '' ']'
09:53:49++ unset VIRTUAL_ENV
09:53:49++ unset VIRTUAL_ENV_PROMPT
09:53:49++ '[' '!' nondestructive = nondestructive ']'
09:53:49++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:53:49++ export VIRTUAL_ENV
09:53:49++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:53:49++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:53:49++ export PATH
09:53:49++ '[' -n '' ']'
09:53:49++ '[' -z '' ']'
09:53:49++ _OLD_VIRTUAL_PS1=
09:53:49++ PS1='(omero-virtualenv) '
09:53:49++ export PS1
09:53:49++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:53:49++ export VIRTUAL_ENV_PROMPT
09:53:49++ hash -r
09:53:49+ source docs/hudson/OMERO.sh
09:53:49++ set -e
09:53:49++ set -u
09:53:49++ set -x
09:53:49++ source docs/hudson/functions.sh
09:53:49++ echo Building merge_ci
09:53:49Building merge_ci
09:53:49++ python3 ./build.py build-dev release-all
09:53:49Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:53:5009:53:50check-ivy:
09:53:50Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:53:50Created dir: /home/omero/workspace/OMERO-build/src/target
09:53:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:5209:53:52build-scons:
09:53:52Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:53:54No sub-builds to iterate on
09:53:54Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:53:5409:53:54buildlist:
09:53:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:5509:53:55clean:
09:53:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:5609:53:56python-clean:
09:53:56WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:56/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-8dd2d4ecba-ice36-b9') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:56 warnings.warn(
09:53:56running clean
09:53:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:53:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:53:5709:53:57python-clean:
09:53:57WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:57/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-8dd2d4ecba-ice36-b9') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:57 warnings.warn(
09:53:57running clean
09:53:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:53:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:53:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:53:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:53:5809:53:58python-clean:
09:53:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-8dd2d4ecba-ice36-b9') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:58 warnings.warn(
09:53:58running clean
09:53:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:53:58Deleting directory /home/omero/workspace/OMERO-build/src/target
09:53:5909:53:59build-scons:
09:53:59Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:54:0109:54:01build:
09:54:01No sub-builds to iterate on
09:54:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:54:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:54:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:54:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:54:0209:54:02tools-init:
09:54:02no-op
09:54:0209:54:02retrieve:
09:54:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:54:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:55:2009:55:20prepare:
09:55:20Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:55:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:55:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:55:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:55:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:55:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:55:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:55:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:55:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:55:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:55:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:55:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:55:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:55:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:55:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:55:2109:55:21pre-compile:
09:55:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:55:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:55:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:55:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:55:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:55:3709:55:37compile:
09:55:37no-op
09:55:3809:55:38package:
09:55:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:55:4209:55:42install:
09:55:42:: delivering :: omero#omero_client;working@49ebfd13b7da :: 5.6.3-614-8dd2d4ecba-ice36-b9 :: integration :: Tue Jul 14 09:54:02 UTC 2026
09:55:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:55:42:: publishing :: omero#omero_client
09:55:42 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-8dd2d4ecba-ice36-b9/omero_client-5.6.3-614-8dd2d4ecba-ice36-b9.jar
09:55:42 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-8dd2d4ecba-ice36-b9/omero_client-5.6.3-614-8dd2d4ecba-ice36-b9.xml
09:55:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:55:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:55:4309:55:43retrieve:
09:55:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:55:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:55:44Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:55:4409:55:44dist:
09:55:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:55:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:55:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:55:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:55:44Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:55:45Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:55:45Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:55:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:55:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:55:4709:55:47copy-licenses:
09:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:55:47Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:55:47Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:55:4709:55:47copy-history:
09:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:55:4709:55:47copy-etc:
09:55:47Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:55:4809:55:48copy-sql:
09:55:48Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:55:5909:55:59copy-server:
09:55:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:56:1009:56:10copy-client:
09:56:10Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:56:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:56:1909:56:19update-version:
09:56:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:56:1909:56:19create-workdirs:
09:56:19Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:56:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:56:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:56:1909:56:19copy-luts:
09:56:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:56:19Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:56:2009:56:20test-compile:
09:56:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:56:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:56:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:56:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:56:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:56:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:56:22Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:56:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:56:2209:56:22testng-init:
09:56:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:56:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:56:3209:56:31,629 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:56:3209:56:31,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
09:56:3209:56:31,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:56:3209:56:31,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:56:3209:56:31,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:56:3209:56:31,645 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:56:3209:56:31,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 10 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:56:3209:56:31,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:56:3209:56:31,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:56:3209:56:31,651 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:56:3209:56:31,653 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:56:3209:56:31,656 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
09:56:3209:56:31,656 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:56:3209:56:31,656 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:56:3209:56:31,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:56:3209:56:31,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:56:3209:56:31,919 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:56:3209:56:31,921 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:56:3209:56:31,921 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
09:56:3209:56:31,996 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
09:56:3209:56:31,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:56:3209:56:31,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:56:3209:56:31,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:56:3209:56:31,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:56:3209:56:31,997 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:56:3209:56:31,997 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:56:3209:56:31,998 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
09:56:3209:56:32,001 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
09:56:3209:56:32,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 353 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:56:3209:56:32lifecycle.test-compile:
09:56:32Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:56:32Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:56:32warning: [options] bootstrap class path not set in conjunction with -source 8
09:56:32warning: [options] source value 8 is obsolete and will be removed in a future release
09:56:32warning: [options] target value 8 is obsolete and will be removed in a future release
09:56:32warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
09:56:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:34import omero.grid.RawAccessRequest;
09:56:34 ^
09:56:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:34import omero.grid.RawAccessRequest;
09:56:34 ^
09:56:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:34import omero.grid.RawAccessRequest;
09:56:34 ^
09:56:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:56:35import omero.model.ImportJob;
09:56:35 ^
09:56:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:56:35import omero.model.ImportJobI;
09:56:35 ^
09:56:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:56:35 IObject link = (IObject) linkClass.newInstance();
09:56:35 ^
09:56:35 where T is a type-variable:
09:56:35 T extends Object declared in class Class
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:56:36 T copy = (T) obj.getClass().newInstance();
09:56:36 ^
09:56:36 where T is a type-variable:
09:56:36 T extends Object declared in class Class
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:36 RawAccessRequest raw = new RawAccessRequest();
09:56:36 ^
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:36 RawAccessRequest raw = new RawAccessRequest();
09:56:36 ^
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:56:36 raw.repoUuid = legacy.root().getHash().getValue();
09:56:36 ^
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:56:36 raw.command = "rm";
09:56:36 ^
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:56:36 raw.args = Arrays.asList(path);
09:56:36 ^
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:56:36 final IObject link = linkClass.newInstance();
09:56:36 ^
09:56:36 where T is a type-variable:
09:56:36 T extends Object declared in class Class
09:56:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:56:36 originalLink.setChild(annotationClass.newInstance());
09:56:36 ^
09:56:36 where T is a type-variable:
09:56:36 T extends Object declared in class Class
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:56:37 RoiResult r = svc.findByImage(id, new RoiOptions());
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:37 final RawAccessRequest request = new RawAccessRequest();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:37 final RawAccessRequest request = new RawAccessRequest();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:56:37 request.repoUuid = repo.root().getHash().getValue();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:56:37 request.command = "exists";
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:56:37 request.args = Collections.singletonList(dirPath);
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:37 final RawAccessRequest request = new RawAccessRequest();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:56:37 final RawAccessRequest request = new RawAccessRequest();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:56:37 request.repoUuid = repo.root().getHash().getValue();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:56:37 request.command = "exists";
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:56:37 request.args = Collections.singletonList(dirName);
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:56:37 final ImportJob importJob = new ImportJobI();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:56:37 final ImportJob importJob = new ImportJobI();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:56:37 importJob.setImageName(omero.rtypes.rstring(name));
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:56:37 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:56:37 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:56:37 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:56:37 final String savedName = sent.getImageName().getValue().toString();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:56:37 final String savedDesc = sent.getImageDescription().getValue().toString();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:56:37 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:56:37 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:56:37 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:56:37 ^
09:56:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:56:37 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:56:37 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 RoiResult r = svc.findByImage(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:56:38 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:56:38 table = svc.getTable(f.getId().getValue());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 RoiResult r = svc.findByImage(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:56:38 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:56:38 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
09:56:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:56:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:56:38 svc.getShapeStatsRestricted(
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:56:38 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:56:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:56:38 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:56:38 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:56:38 request.typesToIgnore = Collections.singletonList("Annotation");
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:56:38 request.typesToIgnore = Collections.singletonList("Annotation");
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:56:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:56:38 p2.setRelatedTo(p1);
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:56:38 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:56:38 pixels1.setRelatedTo(pixels2);
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:56:38 Pixels pixels = pixels1.getRelatedTo();
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:56:38 Assert.assertNull(pixels1.getRelatedTo());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:56:38 pixels1.setRelatedTo(pixels2);
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:56:38 Pixels pixels = pixels1.getRelatedTo();
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:56:38 Assert.assertNull(pixels1.getRelatedTo());
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:56:38 ^
09:56:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:56:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:56:38 ^
09:56:39Note: Some input files use unchecked or unsafe operations.
09:56:39Note: Recompile with -Xlint:unchecked for details.
09:56:3991 warnings
09:56:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_128498933.tmp
09:56:39Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:56:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:56:39:: delivering :: omero#OmeroJava-test;working@49ebfd13b7da :: 5.6.3-614-8dd2d4ecba-ice36-b9 :: integration :: Tue Jul 14 09:56:22 UTC 2026
09:56:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:56:39:: publishing :: omero#OmeroJava-test
09:56:39 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-8dd2d4ecba-ice36-b9.jar
09:56:39 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-8dd2d4ecba-ice36-b9.xml
09:56:3909:56:39build-eclipse:
09:56:39No sub-builds to iterate on
09:56:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:56:4009:56:40retrieve:
09:56:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:56:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:56:4509:56:45prepare:
09:56:45Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:56:4809:56:48release-clients:
09:56:48Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-8dd2d4ecba-ice36-b9.zip
09:56:5409:56:54release-zip:
09:56:54Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9.zip
09:57:0609:57:06BUILD SUCCESSFUL
09:57:06Total time: 3 minutes 16 seconds
09:57:06++ '[' -d .git ']'
09:57:06++ python3 ./build.py release-src
09:57:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:57:0709:57:07release-src-git:
09:57:07Releasing openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9
09:57:09 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9.zip
09:57:09 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9-base.zip
09:57:1009:57:10BUILD SUCCESSFUL
09:57:10Total time: 3 seconds
09:57:10++ echo BUILD_NUMBER=9
09:57:10++ echo OMERO_BRANCH=merge_ci
09:57:10++ git_info
09:57:10+++ git rev-parse HEAD
09:57:10++ HEAD=8dd2d4ecba432907d232f84470ae2ae88f53ab42
09:57:10++ git log --max-count=1 8dd2d4ecba432907d232f84470ae2ae88f53ab42
09:57:10++ env
09:57:10++ sort
09:57:10Archiving artifacts
09:57:27Finished: SUCCESS
