00:39:07Started by upstream project "Trigger" build number 10800:39:07originally caused by:
00:39:07 Started by timer
00:39:07Running as SYSTEM
00:39:07Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:39:07The recommended git tool is: NONE
00:39:07No credentials specified
00:39:07 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:39:07Fetching changes from the remote Git repository
00:39:07 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:39:07Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:39:07 > git --version # timeout=10
00:39:07 > git --version # 'git version 2.39.3'
00:39:07 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:39:10 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:39:10Checking out Revision 56b212556ea564149fd9db700ce751fd19cd0575 (origin/merge_ci)
00:39:10 > git config core.sparsecheckout # timeout=10
00:39:10 > git checkout -f 56b212556ea564149fd9db700ce751fd19cd0575 # timeout=10
00:39:10Commit message: "Add version.properties to etc/omero.properties"
00:39:10 > git rev-list --no-walk 3715a4a439d056f716bdae3315b4cff5c7a9fb90 # timeout=10
00:39:10Cleaning workspace
00:39:10 > git rev-parse --verify HEAD # timeout=10
00:39:10Resetting working tree
00:39:10 > git reset --hard # timeout=10
00:39:10 > git clean -fdx # timeout=10
00:39:10Copied 6 artifacts from "OMERO-python-superbuild-build" build number 9500:39:10[OMERO-build] $ /bin/bash -xe /tmp/jenkins6787014605580571064.sh
00:39:10+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:39:10+ cd src
00:39:10+ export OMERO_BRANCH=merge_ci
00:39:10+ OMERO_BRANCH=merge_ci
00:39:10+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:10+ source /home/omero/settings.env
00:39:10++ OMERO_DB_HOST=pg
00:39:10++ OMERO_DB_USER=postgres
00:39:10++ OMERO_DB_PASS=
00:39:10++ OMERO_ROOT_PASS=omero
00:39:10++ OMERO_DATA_DIR=/OMERO
00:39:10++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:39:10+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:13+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:39:14Collecting zeroc-ice==3.6.5
00:39:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:39:18WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:18You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:18+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:39:18Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.0.0)
00:39:19Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3)
00:39:19Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:39:19Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:39:19Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:39:19Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:39:19Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:39:19Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:39:19Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:39:19Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:39:19Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:39:19Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:39:19Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:39:19Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:39:19WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:19You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:19+ source docs/hudson/OMERO.sh
00:39:19++ set -e
00:39:19++ set -u
00:39:19++ set -x
00:39:19++ source docs/hudson/functions.sh
00:39:19++ echo Building merge_ci
00:39:19Building merge_ci
00:39:19++ python3 ./build.py build-dev release-all
00:39:19OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:2000:39:20check-ivy:
00:39:20Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:20Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:21:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:2100:39:21build-scons:
00:39:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:22No sub-builds to iterate on
00:39:22Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:2200:39:22buildlist:
00:39:22:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:2200:39:22clean:
00:39:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:2200:39:22python-clean:
00:39:22WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:22/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-471-56b212556e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:22 warnings.warn(
00:39:22running clean
00:39:22Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:2300:39:23python-clean:
00:39:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:23/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-471-56b212556e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:23 warnings.warn(
00:39:23running clean
00:39:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:2300:39:23python-clean:
00:39:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:23/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-471-56b212556e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:23 warnings.warn(
00:39:23running clean
00:39:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:23Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:2300:39:23build-scons:
00:39:23Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:2300:39:23build:
00:39:23No sub-builds to iterate on
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:2300:39:23tools-init:
00:39:23no-op
00:39:2400:39:24retrieve:
00:39:24:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:1500:40:15prepare:
00:40:15Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:1500:40:15pre-compile:
00:40:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:1500:40:15compile:
00:40:15no-op
00:40:1500:40:15package:
00:40:15Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:1600:40:16install:
00:40:16:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-471-56b212556e-ice36 :: integration :: Wed Jun 19 00:39:23 UTC 2024
00:40:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:16:: publishing :: omero#omero_client
00:40:16 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-471-56b212556e-ice36/omero_client-5.6.3-471-56b212556e-ice36.jar
00:40:16 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-471-56b212556e-ice36/omero_client-5.6.3-471-56b212556e-ice36.xml
00:40:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:1600:40:16retrieve:
00:40:16:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:1700:40:17dist:
00:40:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:17Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:17Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:40:17Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:1700:40:17copy-licenses:
00:40:17Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:17Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:17Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:1700:40:17copy-history:
00:40:17Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:1700:40:17copy-etc:
00:40:17Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:1800:40:18copy-sql:
00:40:18Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:3500:40:35copy-server:
00:40:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:40:3600:40:36copy-client:
00:40:36Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:40:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:40:3800:40:38update-version:
00:40:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:3800:40:38create-workdirs:
00:40:38Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:40:38Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:40:3800:40:38copy-luts:
00:40:38Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:38Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:3900:40:39test-compile:
00:40:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:4000:40:40testng-init:
00:40:40:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4500:40:44,706 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:40:4500:40:44,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
00:40:4500:40:44,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:4500:40:44,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:4500:40:44,715 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:4500:40:44,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:4500:40:44,717 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:4500:40:44,717 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:4500:40:44,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:4500:40:44,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:4500:40:44,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:4500:40:44,721 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
00:40:4500:40:44,721 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:4500:40:44,721 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:4500:40:45,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:4500:40:45,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:4500:40:45,043 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:4500:40:45,045 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:4500:40:45,045 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
00:40:4500:40:45,132 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
00:40:4500:40:45,133 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:4500:40:45,133 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:4500:40:45,133 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:4500:40:45,133 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:4500:40:45,133 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:4500:40:45,133 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:4500:40:45,134 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
00:40:4500:40:45,137 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
00:40:4500:40:45,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 418 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:4500:40:45lifecycle.test-compile:
00:40:45Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:45Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:45warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:48import omero.grid.RawAccessRequest;
00:40:48 ^
00:40:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:48import omero.grid.RawAccessRequest;
00:40:48 ^
00:40:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:48import omero.grid.RawAccessRequest;
00:40:48 ^
00:40:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:48import omero.model.ImportJob;
00:40:48 ^
00:40:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:48import omero.model.ImportJobI;
00:40:48 ^
00:40:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:49 IObject link = (IObject) linkClass.newInstance();
00:40:49 ^
00:40:49 where T is a type-variable:
00:40:49 T extends Object declared in class Class
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:50 T copy = (T) obj.getClass().newInstance();
00:40:50 ^
00:40:50 where T is a type-variable:
00:40:50 T extends Object declared in class Class
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:50 RawAccessRequest raw = new RawAccessRequest();
00:40:50 ^
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:50 RawAccessRequest raw = new RawAccessRequest();
00:40:50 ^
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:50 raw.repoUuid = legacy.root().getHash().getValue();
00:40:50 ^
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:50 raw.command = "rm";
00:40:50 ^
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:50 raw.args = Arrays.asList(path);
00:40:50 ^
00:40:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:50 final IObject link = linkClass.newInstance();
00:40:50 ^
00:40:50 where T is a type-variable:
00:40:50 T extends Object declared in class Class
00:40:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:51 originalLink.setChild(annotationClass.newInstance());
00:40:51 ^
00:40:51 where T is a type-variable:
00:40:51 T extends Object declared in class Class
00:40:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:51 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:51 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:52 final RawAccessRequest request = new RawAccessRequest();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:52 final RawAccessRequest request = new RawAccessRequest();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:52 request.repoUuid = repo.root().getHash().getValue();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:52 request.command = "exists";
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:52 request.args = Collections.singletonList(dirPath);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:52 final RawAccessRequest request = new RawAccessRequest();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:52 final RawAccessRequest request = new RawAccessRequest();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:52 request.repoUuid = repo.root().getHash().getValue();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:52 request.command = "exists";
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:52 request.args = Collections.singletonList(dirName);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:52 final ImportJob importJob = new ImportJobI();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:52 final ImportJob importJob = new ImportJobI();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:52 importJob.setImageName(omero.rtypes.rstring(name));
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:52 final String savedName = sent.getImageName().getValue().toString();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:52 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:52 table = svc.getTable(f.getId().getValue());
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:52 svc.getShapeStatsRestricted(
00:40:52 ^
00:40:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:52 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:53 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:53 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:53 p2.setRelatedTo(p1);
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:53 pixels1.setRelatedTo(pixels2);
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:53 Pixels pixels = pixels1.getRelatedTo();
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:53 Assert.assertNull(pixels1.getRelatedTo());
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:53 pixels1.setRelatedTo(pixels2);
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:53 Pixels pixels = pixels1.getRelatedTo();
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:53 Assert.assertNull(pixels1.getRelatedTo());
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:53 ^
00:40:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:53 ^
00:40:53Note: Some input files use unchecked or unsafe operations.
00:40:53Note: Recompile with -Xlint:unchecked for details.
00:40:5388 warnings
00:40:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1560655098.tmp
00:40:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:53:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-471-56b212556e-ice36 :: integration :: Wed Jun 19 00:40:39 UTC 2024
00:40:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:53:: publishing :: omero#OmeroJava-test
00:40:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-471-56b212556e-ice36.jar
00:40:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-471-56b212556e-ice36.xml
00:40:5300:40:53build-eclipse:
00:40:53No sub-builds to iterate on
00:40:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:5400:40:54retrieve:
00:40:54:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5800:40:58prepare:
00:40:58Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:0000:41:00release-clients:
00:41:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-471-56b212556e-ice36.zip
00:41:0600:41:06release-zip:
00:41:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-471-56b212556e-ice36.zip
00:41:1900:41:19BUILD SUCCESSFUL
00:41:19Total time: 1 minute 59 seconds
00:41:20++ '[' -d .git ']'
00:41:20++ python3 ./build.py release-src
00:41:20OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:41:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:2000:41:20release-src-git:
00:41:20Releasing openmicroscopy-5.6.3-471-56b212556e-ice36
00:41:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-471-56b212556e-ice36.zip
00:41:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-471-56b212556e-ice36-base.zip
00:41:2400:41:24BUILD SUCCESSFUL
00:41:24Total time: 3 seconds
00:41:24++ echo BUILD_NUMBER=96
00:41:24++ echo OMERO_BRANCH=merge_ci
00:41:24++ git_info
00:41:24+++ git rev-parse HEAD
00:41:24++ HEAD=56b212556ea564149fd9db700ce751fd19cd0575
00:41:24++ git log --max-count=1 56b212556ea564149fd9db700ce751fd19cd0575
00:41:24++ env
00:41:24++ sort
00:41:24Archiving artifacts
00:41:53Finished: SUCCESS
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