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13:40:53 Started by upstream project "Trigger" build number 89
13:40:53 originally caused by:
13:40:53  Started by timer
13:40:53 Running as SYSTEM
13:40:53 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
13:40:53 The recommended git tool is: NONE
13:40:53 No credentials specified
13:40:53  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
13:40:53 Fetching changes from the remote Git repository
13:40:53  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
13:40:53 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
13:40:53  > git --version # timeout=10
13:40:53  > git --version # 'git version 2.52.0'
13:40:53  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:40:58  > git rev-parse origin/merge_ci^{commit} # timeout=10
13:40:58 Checking out Revision eb33db9529f20834604d65d8d4d3a63466ba4ffe (origin/merge_ci)
13:40:58  > git config core.sparsecheckout # timeout=10
13:40:58  > git checkout -f eb33db9529f20834604d65d8d4d3a63466ba4ffe # timeout=10
13:41:22 Commit message: "Add version.properties to etc/omero.properties"
13:41:22  > git rev-list --no-walk 151707f7e01908ceb3301cd50ed6b189f654f8ba # timeout=10
13:41:22 Cleaning workspace
13:41:22  > git rev-parse --verify HEAD # timeout=10
13:41:22 Resetting working tree
13:41:22  > git reset --hard # timeout=10
13:41:23  > git clean -fdx # timeout=10
13:42:27 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 63
13:42:28 [OMERO-build] $ /bin/bash -xe /tmp/jenkins2686372116690646241.sh
13:42:28 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
13:42:28 + cd src
13:42:28 + export OMERO_BRANCH=merge_ci
13:42:28 + OMERO_BRANCH=merge_ci
13:42:28 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
13:42:28 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
13:43:09 + source /home/omero/settings.env
13:43:09 ++ OMERO_DB_HOST=pg
13:43:09 ++ OMERO_DB_USER=postgres
13:43:09 ++ OMERO_DB_PASS=
13:43:09 ++ OMERO_ROOT_PASS=omero
13:43:09 ++ OMERO_DATA_DIR=/OMERO
13:43:09 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:43:09 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
13:43:30 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
13:43:32 Collecting zeroc-ice==3.6.5
13:43:32   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
13:43:35      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.3 MB/s eta 0:00:00
13:43:35 Installing collected packages: zeroc-ice
13:43:40 Successfully installed zeroc-ice-3.6.5
13:43:40 
13:43:40 [notice] A new release of pip available: 22.3.1 -> 26.2.1
13:43:40 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:43:40 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
13:43:41 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
13:43:41 Collecting setuptools<66
13:43:41   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
13:43:41 Collecting omero-py
13:43:42   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
13:43:42 Collecting appdirs
13:43:42   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
13:43:42 Collecting future
13:43:42   Using cached future-1.0.0-py3-none-any.whl (491 kB)
13:43:43 Collecting numpy<3,>=2
13:43:43   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
13:43:44 Collecting Pillow>=10.0.0
13:43:44   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
13:43:44 Collecting PyYAML
13:43:44   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
13:43:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
13:43:44 Collecting requests
13:43:44   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
13:43:44 Collecting portalocker
13:43:44   Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
13:43:45 Collecting charset_normalizer<4,>=2
13:43:45   Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
13:43:45 Collecting idna<4,>=2.5
13:43:45   Using cached idna-3.19-py3-none-any.whl (68 kB)
13:43:45 Collecting urllib3<3,>=1.26
13:43:45   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
13:43:45 Collecting certifi>=2023.5.7
13:43:45   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
13:43:45 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
13:43:47   Attempting uninstall: setuptools
13:43:47     Found existing installation: setuptools 65.5.1
13:43:48     Uninstalling setuptools-65.5.1:
13:43:49       Successfully uninstalled setuptools-65.5.1
13:44:47 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.19 numpy-2.4.6 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
13:44:47 
13:44:47 [notice] A new release of pip available: 22.3.1 -> 26.2.1
13:44:47 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:44:47 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
13:44:47 ++ deactivate nondestructive
13:44:47 ++ '[' -n '' ']'
13:44:47 ++ '[' -n '' ']'
13:44:47 ++ hash -r
13:44:47 ++ '[' -n '' ']'
13:44:47 ++ unset VIRTUAL_ENV
13:44:47 ++ unset VIRTUAL_ENV_PROMPT
13:44:47 ++ '[' '!' nondestructive = nondestructive ']'
13:44:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
13:44:47 ++ export VIRTUAL_ENV
13:44:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:44:47 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:44:47 ++ export PATH
13:44:47 ++ '[' -n '' ']'
13:44:47 ++ '[' -z '' ']'
13:44:47 ++ _OLD_VIRTUAL_PS1=
13:44:47 ++ PS1='(omero-virtualenv) '
13:44:47 ++ export PS1
13:44:47 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
13:44:47 ++ export VIRTUAL_ENV_PROMPT
13:44:47 ++ hash -r
13:44:47 + source docs/hudson/OMERO.sh
13:44:47 ++ set -e
13:44:47 ++ set -u
13:44:47 ++ set -x
13:44:47 ++ source docs/hudson/functions.sh
13:44:47 ++ echo Building merge_ci
13:44:47 Building merge_ci
13:44:47 ++ python3 ./build.py build-dev release-all
13:44:47 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:44:49 
13:44:49 check-ivy:
13:44:49 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:44:49 Created dir: /home/omero/workspace/OMERO-build/src/target
13:44:49 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:44:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:44:51 
13:44:51 build-scons:
13:44:51 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:44:53 No sub-builds to iterate on
13:44:54 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:44:54 
13:44:54 buildlist:
13:44:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:44:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:44:54 
13:44:54 clean:
13:44:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:44:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:44:55 
13:44:55 python-clean:
13:44:55 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:44:55 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-eb33db9529-ice36-b72') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:44:55   warnings.warn(
13:44:55 running clean
13:44:56 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:44:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:44:57 
13:44:57 python-clean:
13:44:57 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:44:57 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-eb33db9529-ice36-b72') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:44:57   warnings.warn(
13:44:57 running clean
13:44:57 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:44:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:44:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:44:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:44:59 
13:44:59 python-clean:
13:44:59 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:44:59 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-677-eb33db9529-ice36-b72') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:44:59   warnings.warn(
13:44:59 running clean
13:44:59 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:44:59 Deleting directory /home/omero/workspace/OMERO-build/src/target
13:45:01 
13:45:01 build-scons:
13:45:01 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:45:04 
13:45:04 build:
13:45:04 No sub-builds to iterate on
13:45:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:45:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:45:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:45:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:45:06 
13:45:06 tools-init:
13:45:06 no-op
13:45:06 
13:45:06 retrieve:
13:45:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:45:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:47:28 
13:47:28 prepare:
13:47:28 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:47:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:47:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:47:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:47:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:47:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:47:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:47:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:47:28 
13:47:28 pre-compile:
13:47:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:47:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:47:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:47:47 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:47:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:47:51 
13:47:51 compile:
13:47:51 no-op
13:47:52 
13:47:52 package:
13:47:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:47:58 
13:47:58 install:
13:47:58 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-677-eb33db9529-ice36-b72 :: integration :: Tue Sep 08 13:45:05 UTC 2026
13:47:58 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:47:58 :: publishing :: omero#omero_client
13:47:58 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-eb33db9529-ice36-b72/omero_client-5.6.3-677-eb33db9529-ice36-b72.jar
13:47:58 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-677-eb33db9529-ice36-b72/omero_client-5.6.3-677-eb33db9529-ice36-b72.xml
13:47:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:47:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:48:00 
13:48:00 retrieve:
13:48:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:48:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:48:01 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:48:01 
13:48:01 dist:
13:48:01 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:48:01 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:48:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:48:01 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:48:02 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:48:02 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
13:48:03 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:48:04 Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:48:04 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:48:05 
13:48:05 copy-licenses:
13:48:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:48:05 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:48:05 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:48:05 
13:48:05 copy-history:
13:48:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:48:05 
13:48:05 copy-etc:
13:48:05 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:48:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:48:06 
13:48:06 copy-sql:
13:48:06 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:48:48 
13:48:48 copy-server:
13:48:48 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
13:48:48 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
13:48:59 
13:48:59 copy-client:
13:48:59 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:49:08 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
13:49:08 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
13:49:17 
13:49:17 update-version:
13:49:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:49:17 
13:49:17 create-workdirs:
13:49:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:49:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:49:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
13:49:17 
13:49:17 copy-luts:
13:49:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:49:17 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:49:17 
13:49:17 test-compile:
13:49:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:49:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:49:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:49:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:49:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:49:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:49:20 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:49:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:49:21 
13:49:21 testng-init:
13:49:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:49:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:49:35 13:49:34,588 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
13:49:35 13:49:34,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - No custom configurators were discovered as a service.
13:49:35 13:49:34,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:49:35 13:49:34,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:49:35 13:49:34,610 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:49:35 13:49:34,616 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:49:35 13:49:34,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 15 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:49:35 13:49:34,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:49:35 13:49:34,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:49:35 13:49:34,627 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:49:35 13:49:34,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:49:35 13:49:34,635 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs multiple times on the classpath.
13:49:35 13:49:34,635 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:49:35 13:49:34,635 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4b693be7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:49:35 13:49:35,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:49:35 13:49:35,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:49:35 13:49:35,174 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:49:35 13:49:35,181 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:49:35 13:49:35,181 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - Please move "immediateFlush" property into the enclosing appender.
13:49:35 13:49:35,323 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3795591d - Setting the "immediateFlush" property of the enclosing appender to true
13:49:35 13:49:35,324 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:49:35 13:49:35,324 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:49:35 13:49:35,324 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:49:35 13:49:35,324 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:49:35 13:49:35,324 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:49:35 13:49:35,324 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:49:35 13:49:35,326 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5f069693 - End of configuration.
13:49:35 13:49:35,328 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30384990 - Registering current configuration as safe fallback point
13:49:35 13:49:35,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3afab566 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 708 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:49:35 
13:49:35 lifecycle.test-compile:
13:49:35 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:49:35 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:49:36 warning: [options] bootstrap class path not set in conjunction with -source 8
13:49:36 warning: [options] source value 8 is obsolete and will be removed in a future release
13:49:36 warning: [options] target value 8 is obsolete and will be removed in a future release
13:49:36 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
13:49:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:39 import omero.grid.RawAccessRequest;
13:49:39                  ^
13:49:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:40 import omero.grid.RawAccessRequest;
13:49:40                  ^
13:49:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:40 import omero.grid.RawAccessRequest;
13:49:40                  ^
13:49:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:49:40 import omero.model.ImportJob;
13:49:40                   ^
13:49:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:49:40 import omero.model.ImportJobI;
13:49:40                   ^
13:49:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
13:49:42         IObject link = (IObject) linkClass.newInstance();
13:49:42                                           ^
13:49:42   where T is a type-variable:
13:49:42     T extends Object declared in class Class
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:49:43         T copy = (T) obj.getClass().newInstance();
13:49:43                                    ^
13:49:43   where T is a type-variable:
13:49:43     T extends Object declared in class Class
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:43         RawAccessRequest raw = new RawAccessRequest();
13:49:43         ^
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:43         RawAccessRequest raw = new RawAccessRequest();
13:49:43                                    ^
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:49:43         raw.repoUuid = legacy.root().getHash().getValue();
13:49:43            ^
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:49:43         raw.command = "rm";
13:49:43            ^
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:49:43         raw.args = Arrays.asList(path);
13:49:43            ^
13:49:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:49:43         final IObject link = linkClass.newInstance();
13:49:43                                       ^
13:49:43   where T is a type-variable:
13:49:43     T extends Object declared in class Class
13:49:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:49:44             originalLink.setChild(annotationClass.newInstance());
13:49:44                                                  ^
13:49:44   where T is a type-variable:
13:49:44     T extends Object declared in class Class
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:49:45         RoiResult r = svc.findByImage(id, new RoiOptions());
13:49:45                          ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:45         final RawAccessRequest request = new RawAccessRequest();
13:49:45               ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:45         final RawAccessRequest request = new RawAccessRequest();
13:49:45                                              ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:49:45         request.repoUuid = repo.root().getHash().getValue();
13:49:45                ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:49:45         request.command = "exists";
13:49:45                ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:49:45         request.args = Collections.singletonList(dirPath);
13:49:45                ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:45         final RawAccessRequest request = new RawAccessRequest();
13:49:45               ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:49:45         final RawAccessRequest request = new RawAccessRequest();
13:49:45                                              ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:49:45         request.repoUuid = repo.root().getHash().getValue();
13:49:45                ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:49:45         request.command = "exists";
13:49:45                ^
13:49:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:49:45         request.args = Collections.singletonList(dirName);
13:49:45                ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:49:46             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
13:49:46                                      ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:49:46         final ImportJob importJob = new ImportJobI();
13:49:46               ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:49:46         final ImportJob importJob = new ImportJobI();
13:49:46                                         ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:49:46         importJob.setImageName(omero.rtypes.rstring(name));
13:49:46                  ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:49:46         importJob.setImageDescription(omero.rtypes.rstring(desc));
13:49:46                  ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:49:46         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:49:46         ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:49:46         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:49:46                           ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:49:46         final String savedName = sent.getImageName().getValue().toString();
13:49:46                                      ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:49:46         final String savedDesc = sent.getImageDescription().getValue().toString();
13:49:46                                      ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:49:46         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:49:46               ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:49:46         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:49:46                                               ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:49:46         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:49:46                                                        ^
13:49:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:49:46         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:49:46                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         RoiResult r = svc.findByImage(image.getId().getValue(),
13:49:47                          ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:49:47                                 ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:49:47                ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:49:47                ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:49:47                                 ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:49:47         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:49:47                                          ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:49:47                                 ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:49:47         table = svc.getTable(f.getId().getValue());
13:49:47                    ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         RoiResult r = svc.findByImage(image.getId().getValue(),
13:49:47                          ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:49:47                ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:49:47         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:49:47                ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:49:47         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:49:47                ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:49:47         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:49:47                ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:49:47                   ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:49:47                                   ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:49:47                                    ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:49:47                                                    ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
13:49:47             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:49:47                                       ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:49:47                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:49:47                                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:49:47                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:49:47                                                         ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:49:47                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:49:47                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:49:47                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:49:47                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:49:47                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:49:47                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:49:47                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:49:47         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:49:47                                                        ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:49:47                 svc.getShapeStatsRestricted(
13:49:47                    ^
13:49:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:49:47         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:49:47                                        ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:49:48         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:49:48                                      ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:49:48         request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:49:48                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:49:48         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:49:48                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:49:48         request.typesToIgnore = Collections.singletonList("Annotation");
13:49:48                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:49:48                     request.typesToIgnore = Collections.singletonList("Annotation");
13:49:48                            ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:49:48         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:49:48                                      ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:49:48         p2.setRelatedTo(p1);
13:49:48           ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:49:48         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:49:48                                           ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:49:48         pixels1.setRelatedTo(pixels2);
13:49:48                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:49:48         Pixels pixels = pixels1.getRelatedTo();
13:49:48                                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:49:48         Assert.assertNull(pixels1.getRelatedTo());
13:49:48                                  ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:49:48         pixels1.setRelatedTo(pixels2);
13:49:48                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:49:48         Pixels pixels = pixels1.getRelatedTo();
13:49:48                                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:49:48         Assert.assertNull(pixels1.getRelatedTo());
13:49:48                                  ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:48         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:49:48                                 ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:48         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:49:48                ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:48         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:49:48                                 ^
13:49:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:49:48         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:49:48                ^
13:49:49 Note: Some input files use unchecked or unsafe operations.
13:49:49 Note: Recompile with -Xlint:unchecked for details.
13:49:49 92 warnings
13:49:49 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_324631899.tmp
13:49:49 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:49:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:49:50 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-677-eb33db9529-ice36-b72 :: integration :: Tue Sep 08 13:49:20 UTC 2026
13:49:50 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:49:50 :: publishing :: omero#OmeroJava-test
13:49:50 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-eb33db9529-ice36-b72.jar
13:49:50 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-677-eb33db9529-ice36-b72.xml
13:49:50 
13:49:50 build-eclipse:
13:49:50 No sub-builds to iterate on
13:49:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:49:51 
13:49:51 retrieve:
13:49:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:49:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:49:59 
13:49:59 prepare:
13:49:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:50:03 
13:50:03 release-clients:
13:50:03 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-677-eb33db9529-ice36-b72.zip
13:50:10 
13:50:10 release-zip:
13:50:10 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-677-eb33db9529-ice36-b72.zip
13:50:24 
13:50:24 BUILD SUCCESSFUL
13:50:24 Total time: 5 minutes 37 seconds
13:50:24 ++ '[' -d .git ']'
13:50:24 ++ python3 ./build.py release-src
13:50:25 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:50:26 
13:50:26 release-src-git:
13:50:26 Releasing openmicroscopy-5.6.3-677-eb33db9529-ice36-b72
13:50:28   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-eb33db9529-ice36-b72.zip
13:50:28   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-677-eb33db9529-ice36-b72-base.zip
13:50:30 
13:50:30 BUILD SUCCESSFUL
13:50:30 Total time: 4 seconds
13:50:30 ++ echo BUILD_NUMBER=72
13:50:30 ++ echo OMERO_BRANCH=merge_ci
13:50:30 ++ git_info
13:50:30 +++ git rev-parse HEAD
13:50:30 ++ HEAD=eb33db9529f20834604d65d8d4d3a63466ba4ffe
13:50:30 ++ git log --max-count=1 eb33db9529f20834604d65d8d4d3a63466ba4ffe
13:50:30 ++ env
13:50:30 ++ sort
13:50:30 Archiving artifacts
13:50:55 Finished: SUCCESS