10:20:46Started by user devspace10:20:46Running as SYSTEM
10:20:46Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:20:46The recommended git tool is: NONE
10:20:46No credentials specified
10:20:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:20:46Fetching changes from the remote Git repository
10:20:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:20:46Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:20:46 > git --version # timeout=10
10:20:46 > git --version # 'git version 2.52.0'
10:20:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:20:53 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:20:53Checking out Revision 47c61a9919fbd03603fe0a202e232e51d9da3c23 (origin/merge_ci)
10:20:53 > git config core.sparsecheckout # timeout=10
10:20:53 > git checkout -f 47c61a9919fbd03603fe0a202e232e51d9da3c23 # timeout=10
10:20:54Commit message: "Add version.properties to etc/omero.properties"
10:20:55 > git rev-list --no-walk e8268b73c69b574108ba55ac2bf9c669d6049865 # timeout=10
10:20:55Cleaning workspace
10:20:55 > git rev-parse --verify HEAD # timeout=10
10:20:55Resetting working tree
10:20:55 > git reset --hard # timeout=10
10:20:55 > git clean -fdx # timeout=10
10:21:42Copied 6 artifacts from "OMERO-python-superbuild-build" build number 8610:21:43[OMERO-build] $ /bin/bash -xe /tmp/jenkins18293443118602340276.sh
10:21:43+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
10:21:43+ cd src
10:21:43+ export OMERO_BRANCH=merge_ci
10:21:43+ OMERO_BRANCH=merge_ci
10:21:43+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
10:21:43+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
10:22:21+ source /home/omero/settings.env
10:22:21++ OMERO_DB_HOST=pg
10:22:21++ OMERO_DB_USER=postgres
10:22:21++ OMERO_DB_PASS=
10:22:21++ OMERO_ROOT_PASS=omero
10:22:21++ OMERO_DATA_DIR=/OMERO
10:22:21++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:22:21+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
10:22:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl10:22:48Collecting zeroc-ice==3.6.5
10:22:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:22:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.2 MB/s eta 0:00:00
10:22:51Installing collected packages: zeroc-ice
10:22:55Successfully installed zeroc-ice-3.6.5
10:22:5610:22:56[notice] A new release of pip available: 22.3.1 -> 26.2.1
10:22:56[notice] To update, run: python3.11 -m pip install --upgrade pip
10:22:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
10:22:57Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
10:22:57Collecting setuptools<66
10:22:57 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
10:22:57Collecting omero-py
10:22:57 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
10:22:58Collecting appdirs
10:22:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:22:58Collecting future
10:22:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:22:58Collecting numpy<3,>=2
10:22:59 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
10:22:59Collecting Pillow>=10.0.0
10:22:59 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
10:23:00Collecting PyYAML
10:23:00 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
10:23:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:23:00Collecting requests
10:23:00 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
10:23:00Collecting portalocker
10:23:00 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
10:23:01Collecting charset_normalizer<4,>=2
10:23:01 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
10:23:01Collecting idna<4,>=2.5
10:23:01 Using cached idna-3.20-py3-none-any.whl (69 kB)
10:23:01Collecting urllib3<3,>=1.26
10:23:01 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
10:23:01Collecting certifi>=2023.5.7
10:23:01 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
10:23:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
10:23:03 Attempting uninstall: setuptools
10:23:03 Found existing installation: setuptools 65.5.1
10:23:03 Uninstalling setuptools-65.5.1:
10:23:04 Successfully uninstalled setuptools-65.5.1
10:24:05Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
10:24:0510:24:05[notice] A new release of pip available: 22.3.1 -> 26.2.1
10:24:05[notice] To update, run: python3.11 -m pip install --upgrade pip
10:24:06+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
10:24:06++ deactivate nondestructive
10:24:06++ '[' -n '' ']'
10:24:06++ '[' -n '' ']'
10:24:06++ hash -r
10:24:06++ '[' -n '' ']'
10:24:06++ unset VIRTUAL_ENV
10:24:06++ unset VIRTUAL_ENV_PROMPT
10:24:06++ '[' '!' nondestructive = nondestructive ']'
10:24:06++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
10:24:06++ export VIRTUAL_ENV
10:24:06++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:24:06++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:24:06++ export PATH
10:24:06++ '[' -n '' ']'
10:24:06++ '[' -z '' ']'
10:24:06++ _OLD_VIRTUAL_PS1=
10:24:06++ PS1='(omero-virtualenv) '
10:24:06++ export PS1
10:24:06++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
10:24:06++ export VIRTUAL_ENV_PROMPT
10:24:06++ hash -r
10:24:06+ source docs/hudson/OMERO.sh
10:24:06++ set -e
10:24:06++ set -u
10:24:06++ set -x
10:24:06++ source docs/hudson/functions.sh
10:24:06++ echo Building merge_ci
10:24:06Building merge_ci
10:24:06++ python3 ./build.py build-dev release-all
10:24:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:24:0910:24:09check-ivy:
10:24:09Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
10:24:09Created dir: /home/omero/workspace/OMERO-build/src/target
10:24:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:24:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:24:1110:24:11build-scons:
10:24:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:24:13No sub-builds to iterate on
10:24:13Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:24:1410:24:14buildlist:
10:24:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:24:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:24:1410:24:14clean:
10:24:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:24:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:24:1510:24:15python-clean:
10:24:15WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:24:15/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-688-47c61a9919-ice36-b96') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:24:15 warnings.warn(
10:24:15running clean
10:24:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
10:24:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:24:1610:24:16python-clean:
10:24:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:24:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-688-47c61a9919-ice36-b96') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:24:16 warnings.warn(
10:24:16running clean
10:24:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
10:24:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:24:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:24:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:24:1810:24:18python-clean:
10:24:18WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:24:18/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-688-47c61a9919-ice36-b96') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:24:18 warnings.warn(
10:24:18running clean
10:24:18Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
10:24:18Deleting directory /home/omero/workspace/OMERO-build/src/target
10:24:2010:24:20build-scons:
10:24:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:24:2210:24:22build:
10:24:22No sub-builds to iterate on
10:24:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:24:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:24:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:24:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:24:2410:24:24tools-init:
10:24:24no-op
10:24:2510:24:25retrieve:
10:24:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:24:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:26:5710:26:57prepare:
10:26:57Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:26:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
10:26:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
10:26:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:26:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:26:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:26:57Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:26:57Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:26:5710:26:57pre-compile:
10:26:57Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:26:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:27:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:27:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:27:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:27:1510:27:15compile:
10:27:15no-op
10:27:1510:27:15package:
10:27:15Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
10:27:2010:27:20install:
10:27:20:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-688-47c61a9919-ice36-b96 :: integration :: Thu Oct 01 10:24:23 UTC 2026
10:27:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
10:27:20:: publishing :: omero#omero_client
10:27:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-688-47c61a9919-ice36-b96/omero_client-5.6.3-688-47c61a9919-ice36-b96.jar
10:27:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-688-47c61a9919-ice36-b96/omero_client-5.6.3-688-47c61a9919-ice36-b96.xml
10:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:27:2110:27:21retrieve:
10:27:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:27:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:27:22Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:27:2210:27:22dist:
10:27:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
10:27:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
10:27:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:27:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:27:23Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
10:27:23Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
10:27:23Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
10:27:24Entering /home/omero/workspace/OMERO-build/src/components/tests...
10:27:25Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:27:2610:27:26copy-licenses:
10:27:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:27:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
10:27:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
10:27:2710:27:27copy-history:
10:27:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:27:2710:27:27copy-etc:
10:27:27Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
10:27:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
10:27:2810:27:28copy-sql:
10:27:28Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
10:28:0710:28:07copy-server:
10:28:07 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
10:28:07 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
10:28:1710:28:17copy-client:
10:28:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
10:28:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
10:28:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
10:28:3110:28:31update-version:
10:28:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
10:28:3110:28:31create-workdirs:
10:28:31Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
10:28:31Created dir: /home/omero/workspace/OMERO-build/src/dist/var
10:28:31Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
10:28:3110:28:31copy-luts:
10:28:31Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:28:31Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:28:3210:28:32test-compile:
10:28:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:28:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:28:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:28:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:28:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:28:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:28:34Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:28:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:28:3510:28:35testng-init:
10:28:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:28:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:28:5110:28:50,930 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
10:28:5110:28:50,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - No custom configurators were discovered as a service.
10:28:5110:28:50,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
10:28:5110:28:50,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
10:28:5110:28:50,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
10:28:5110:28:50,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
10:28:5110:28:50,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 10 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
10:28:5110:28:50,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
10:28:5110:28:50,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
10:28:5110:28:50,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
10:28:5110:28:50,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:28:5110:28:50,956 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@30f38784 - Resource [logback.xml] occurs multiple times on the classpath.
10:28:5110:28:50,956 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@30f38784 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:28:5110:28:50,956 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@30f38784 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
10:28:5110:28:51,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
10:28:5110:28:51,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
10:28:5110:28:51,212 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
10:28:5110:28:51,214 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1615f30 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
10:28:5110:28:51,214 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1615f30 - Please move "immediateFlush" property into the enclosing appender.
10:28:5110:28:51,287 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1615f30 - Setting the "immediateFlush" property of the enclosing appender to true
10:28:5110:28:51,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
10:28:5110:28:51,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
10:28:5110:28:51,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
10:28:5110:28:51,288 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
10:28:5110:28:51,288 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
10:28:5110:28:51,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
10:28:5110:28:51,289 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@314f8420 - End of configuration.
10:28:5110:28:51,291 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@213eeb34 - Registering current configuration as safe fallback point
10:28:5110:28:51,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@31e420b5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
10:28:5110:28:51lifecycle.test-compile:
10:28:51Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:28:51Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:28:52warning: [options] bootstrap class path not set in conjunction with -source 8
10:28:52warning: [options] source value 8 is obsolete and will be removed in a future release
10:28:52warning: [options] target value 8 is obsolete and will be removed in a future release
10:28:52warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
10:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:54import omero.grid.RawAccessRequest;
10:28:54 ^
10:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:55import omero.grid.RawAccessRequest;
10:28:55 ^
10:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:55import omero.grid.RawAccessRequest;
10:28:55 ^
10:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
10:28:55import omero.model.ImportJob;
10:28:55 ^
10:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:28:55import omero.model.ImportJobI;
10:28:55 ^
10:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
10:28:56 IObject link = (IObject) linkClass.newInstance();
10:28:56 ^
10:28:56 where T is a type-variable:
10:28:56 T extends Object declared in class Class
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
10:28:57 T copy = (T) obj.getClass().newInstance();
10:28:57 ^
10:28:57 where T is a type-variable:
10:28:57 T extends Object declared in class Class
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:57 RawAccessRequest raw = new RawAccessRequest();
10:28:57 ^
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:57 RawAccessRequest raw = new RawAccessRequest();
10:28:57 ^
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:28:57 raw.repoUuid = legacy.root().getHash().getValue();
10:28:57 ^
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
10:28:57 raw.command = "rm";
10:28:57 ^
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
10:28:57 raw.args = Arrays.asList(path);
10:28:57 ^
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
10:28:57 final IObject link = linkClass.newInstance();
10:28:57 ^
10:28:57 where T is a type-variable:
10:28:57 T extends Object declared in class Class
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
10:28:57 originalLink.setChild(annotationClass.newInstance());
10:28:57 ^
10:28:57 where T is a type-variable:
10:28:57 T extends Object declared in class Class
10:28:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:28:57 RoiResult r = svc.findByImage(id, new RoiOptions());
10:28:57 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:58 final RawAccessRequest request = new RawAccessRequest();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:58 final RawAccessRequest request = new RawAccessRequest();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:28:58 request.repoUuid = repo.root().getHash().getValue();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
10:28:58 request.command = "exists";
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
10:28:58 request.args = Collections.singletonList(dirPath);
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:58 final RawAccessRequest request = new RawAccessRequest();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:28:58 final RawAccessRequest request = new RawAccessRequest();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:28:58 request.repoUuid = repo.root().getHash().getValue();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
10:28:58 request.command = "exists";
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
10:28:58 request.args = Collections.singletonList(dirName);
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:28:58 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
10:28:58 final ImportJob importJob = new ImportJobI();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:28:58 final ImportJob importJob = new ImportJobI();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
10:28:58 importJob.setImageName(omero.rtypes.rstring(name));
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
10:28:58 importJob.setImageDescription(omero.rtypes.rstring(desc));
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:28:58 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:28:58 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:28:58 final String savedName = sent.getImageName().getValue().toString();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:28:58 final String savedDesc = sent.getImageDescription().getValue().toString();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:28:58 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:28:58 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:28:58 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
10:28:58 ^
10:28:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:28:58 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
10:28:58 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 RoiResult r = svc.findByImage(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
10:28:59 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
10:28:59 table = svc.getTable(f.getId().getValue());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 RoiResult r = svc.findByImage(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:28:59 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:28:59 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
10:28:59 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:28:59 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:28:59 svc.getShapeStatsRestricted(
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:28:59 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:28:59 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:28:59 request.typesToIgnore = Collections.singletonList("TagAnnotation");
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:28:59 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:28:59 request.typesToIgnore = Collections.singletonList("Annotation");
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:28:59 request.typesToIgnore = Collections.singletonList("Annotation");
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:28:59 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:28:59 p2.setRelatedTo(p1);
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:28:59 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:28:59 pixels1.setRelatedTo(pixels2);
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:28:59 Pixels pixels = pixels1.getRelatedTo();
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:28:59 Assert.assertNull(pixels1.getRelatedTo());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:28:59 pixels1.setRelatedTo(pixels2);
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:28:59 Pixels pixels = pixels1.getRelatedTo();
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:28:59 Assert.assertNull(pixels1.getRelatedTo());
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:28:59 ^
10:28:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:28:59 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:28:59 ^
10:29:00Note: Some input files use unchecked or unsafe operations.
10:29:00Note: Recompile with -Xlint:unchecked for details.
10:29:0092 warnings
10:29:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_227483992.tmp
10:29:00Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
10:29:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:29:00:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-688-47c61a9919-ice36-b96 :: integration :: Thu Oct 01 10:28:34 UTC 2026
10:29:00 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
10:29:00:: publishing :: omero#OmeroJava-test
10:29:00 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-688-47c61a9919-ice36-b96.jar
10:29:00 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-688-47c61a9919-ice36-b96.xml
10:29:0110:29:01build-eclipse:
10:29:01No sub-builds to iterate on
10:29:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:29:0110:29:01retrieve:
10:29:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:29:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:29:0610:29:06prepare:
10:29:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:29:1110:29:11release-clients:
10:29:11Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-688-47c61a9919-ice36-b96.zip
10:29:1810:29:18release-zip:
10:29:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-688-47c61a9919-ice36-b96.zip
10:29:3310:29:33BUILD SUCCESSFUL
10:29:33Total time: 5 minutes 27 seconds
10:29:33++ '[' -d .git ']'
10:29:33++ python3 ./build.py release-src
10:29:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:29:3510:29:35release-src-git:
10:29:35Releasing openmicroscopy-5.6.3-688-47c61a9919-ice36-b96
10:29:44 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-688-47c61a9919-ice36-b96.zip
10:29:44 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-688-47c61a9919-ice36-b96-base.zip
10:29:4510:29:45BUILD SUCCESSFUL
10:29:45Total time: 12 seconds
10:29:45++ echo BUILD_NUMBER=96
10:29:46++ echo OMERO_BRANCH=merge_ci
10:29:46++ git_info
10:29:46+++ git rev-parse HEAD
10:29:46++ HEAD=47c61a9919fbd03603fe0a202e232e51d9da3c23
10:29:46++ git log --max-count=1 47c61a9919fbd03603fe0a202e232e51d9da3c23
10:29:46++ env
10:29:46++ sort
10:29:46Archiving artifacts
10:30:06Finished: SUCCESS
