11:46:33Started by upstream project "Trigger" build number 5411:46:33originally caused by:
11:46:33 Started by user devspace11:46:33 Restarted from build #53, stage OMERO Distribution
11:46:33Running as SYSTEM
11:46:33Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:46:33The recommended git tool is: NONE
11:46:33No credentials specified
11:46:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:46:33Fetching changes from the remote Git repository
11:46:33 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:46:33Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:46:33 > git --version # timeout=10
11:46:33 > git --version # 'git version 2.47.3'
11:46:33 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:46:33 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:46:33Checking out Revision ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c (origin/merge_ci)
11:46:33 > git config core.sparsecheckout # timeout=10
11:46:33 > git checkout -f ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c # timeout=10
11:46:33Commit message: "Add version.properties to etc/omero.properties"
11:46:33 > git rev-list --no-walk e85749924e415997e3b44cb7dce742ebbe048cc8 # timeout=10
11:46:33Cleaning workspace
11:46:33 > git rev-parse --verify HEAD # timeout=10
11:46:33Resetting working tree
11:46:33 > git reset --hard # timeout=10
11:46:33 > git clean -fdx # timeout=10
11:46:34Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2711:46:34[OMERO-build] $ /bin/bash -xe /tmp/jenkins10037840970778972223.sh
11:46:34+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
11:46:34+ cd src
11:46:34+ export OMERO_BRANCH=merge_ci
11:46:34+ OMERO_BRANCH=merge_ci
11:46:34+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:46:34+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
11:46:34+ source /home/omero/settings.env
11:46:34++ OMERO_DB_HOST=pg
11:46:34++ OMERO_DB_USER=postgres
11:46:34++ OMERO_DB_PASS=
11:46:34++ OMERO_ROOT_PASS=omero
11:46:34++ OMERO_DATA_DIR=/OMERO
11:46:34++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:46:34+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:46:37+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl11:46:38Collecting zeroc-ice==3.6.5
11:46:38 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:46:41 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 4.8 MB/s eta 0:00:00
11:46:42Installing collected packages: zeroc-ice
11:46:42Successfully installed zeroc-ice-3.6.5
11:46:4211:46:42[notice] A new release of pip available: 22.3.1 -> 25.3
11:46:42[notice] To update, run: python3.11 -m pip install --upgrade pip
11:46:42+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
11:46:43Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
11:46:43Collecting setuptools<66
11:46:43 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
11:46:43Collecting omero-py
11:46:43 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
11:46:43Collecting appdirs
11:46:43 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:46:43Collecting future
11:46:43 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:46:44Collecting numpy<3
11:46:44 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
11:46:44Collecting Pillow>=10.0.0
11:46:44 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
11:46:45Collecting PyYAML
11:46:45 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
11:46:45Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:46:45Collecting requests
11:46:45 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
11:46:45Collecting portalocker
11:46:45 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
11:46:45Collecting charset_normalizer<4,>=2
11:46:45 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
11:46:45Collecting idna<4,>=2.5
11:46:45 Using cached idna-3.11-py3-none-any.whl (71 kB)
11:46:45Collecting urllib3<3,>=1.21.1
11:46:45 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
11:46:45Collecting certifi>=2017.4.17
11:46:45 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
11:46:45Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
11:46:45 Attempting uninstall: setuptools
11:46:45 Found existing installation: setuptools 65.5.1
11:46:45 Uninstalling setuptools-65.5.1:
11:46:45 Successfully uninstalled setuptools-65.5.1
11:46:51Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
11:46:5111:46:51[notice] A new release of pip available: 22.3.1 -> 25.3
11:46:51[notice] To update, run: python3.11 -m pip install --upgrade pip
11:46:51+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
11:46:51++ deactivate nondestructive
11:46:51++ '[' -n '' ']'
11:46:51++ '[' -n '' ']'
11:46:51++ hash -r
11:46:51++ '[' -n '' ']'
11:46:51++ unset VIRTUAL_ENV
11:46:51++ unset VIRTUAL_ENV_PROMPT
11:46:51++ '[' '!' nondestructive = nondestructive ']'
11:46:51++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
11:46:51++ export VIRTUAL_ENV
11:46:51++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:46:51++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:46:51++ export PATH
11:46:51++ '[' -n '' ']'
11:46:51++ '[' -z '' ']'
11:46:51++ _OLD_VIRTUAL_PS1=
11:46:51++ PS1='(omero-virtualenv) '
11:46:51++ export PS1
11:46:51++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
11:46:51++ export VIRTUAL_ENV_PROMPT
11:46:51++ hash -r
11:46:51+ source docs/hudson/OMERO.sh
11:46:51++ set -e
11:46:51++ set -u
11:46:51++ set -x
11:46:51++ source docs/hudson/functions.sh
11:46:51++ echo Building merge_ci
11:46:51Building merge_ci
11:46:51++ python3 ./build.py build-dev release-all
11:46:51Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:46:5111:46:51check-ivy:
11:46:51Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:46:51Created dir: /home/omero/workspace/OMERO-build/src/target
11:46:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:46:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:46:5211:46:52build-scons:
11:46:52Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:46:52No sub-builds to iterate on
11:46:52Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:46:5211:46:52buildlist:
11:46:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:46:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:46:5311:46:53clean:
11:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:46:5311:46:53python-clean:
11:46:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:46:53/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-ad2ef7b5d8-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:46:53 warnings.warn(
11:46:53running clean
11:46:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:46:5311:46:53python-clean:
11:46:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:46:53/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-ad2ef7b5d8-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:46:53 warnings.warn(
11:46:53running clean
11:46:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:46:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:46:5411:46:54python-clean:
11:46:54WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:46:54/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-ad2ef7b5d8-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:46:54 warnings.warn(
11:46:54running clean
11:46:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:46:54Deleting directory /home/omero/workspace/OMERO-build/src/target
11:46:5411:46:54build-scons:
11:46:54Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:46:5411:46:54build:
11:46:54No sub-builds to iterate on
11:46:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:46:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:46:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:46:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:46:5411:46:54tools-init:
11:46:54no-op
11:46:5411:46:54retrieve:
11:46:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:46:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:47:3711:47:37prepare:
11:47:37Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:47:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:47:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:47:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:47:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:47:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:47:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:47:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:47:3711:47:37pre-compile:
11:47:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:47:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:47:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:47:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:47:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:47:3711:47:37compile:
11:47:37no-op
11:47:3811:47:38package:
11:47:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:47:3811:47:38install:
11:47:38:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-586-ad2ef7b5d8-ice36-b31 :: integration :: Fri Jan 23 11:46:54 UTC 2026
11:47:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:47:38:: publishing :: omero#omero_client
11:47:38 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-586-ad2ef7b5d8-ice36-b31/omero_client-5.6.3-586-ad2ef7b5d8-ice36-b31.jar
11:47:38 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-586-ad2ef7b5d8-ice36-b31/omero_client-5.6.3-586-ad2ef7b5d8-ice36-b31.xml
11:47:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:47:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:47:3811:47:38retrieve:
11:47:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:47:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:47:39Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:47:3911:47:39dist:
11:47:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:47:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:47:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:47:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:47:39Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:47:39Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
11:47:39Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:47:39Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:47:39Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:47:3911:47:39copy-licenses:
11:47:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:47:39Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:47:39Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:47:3911:47:39copy-history:
11:47:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:47:3911:47:39copy-etc:
11:47:39Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:47:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:47:3911:47:39copy-sql:
11:47:39Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:47:4411:47:44copy-server:
11:47:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
11:47:4411:47:44copy-client:
11:47:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:47:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
11:47:4611:47:46update-version:
11:47:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:47:4611:47:46create-workdirs:
11:47:46Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:47:46Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:47:46Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
11:47:4611:47:46copy-luts:
11:47:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:47:46Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:47:4611:47:46test-compile:
11:47:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:47:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:47:4611:47:46testng-init:
11:47:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:47:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:47:4911:47:48,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
11:47:4911:47:48,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - No custom configurators were discovered as a service.
11:47:4911:47:48,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:47:4911:47:48,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:47:4911:47:48,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:47:4911:47:48,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:47:4911:47:48,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:47:4911:47:48,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:47:4911:47:48,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:47:4911:47:48,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:47:4911:47:48,980 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:47:4911:47:48,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs multiple times on the classpath.
11:47:4911:47:48,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:47:4911:47:48,981 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:47:4911:47:49,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:47:4911:47:49,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:47:4911:47:49,190 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:47:4911:47:49,192 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:47:4911:47:49,192 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Please move "immediateFlush" property into the enclosing appender.
11:47:4911:47:49,247 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Setting the "immediateFlush" property of the enclosing appender to true
11:47:4911:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:47:4911:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:47:4911:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:47:4911:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:47:4911:47:49,248 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:47:4911:47:49,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:47:4911:47:49,249 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@160b010e - End of configuration.
11:47:4911:47:49,251 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@742b91a5 - Registering current configuration as safe fallback point
11:47:4911:47:49,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 271 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:47:4911:47:49lifecycle.test-compile:
11:47:49Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:47:49Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:47:49warning: [options] bootstrap class path not set in conjunction with -source 8
11:47:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:50import omero.grid.RawAccessRequest;
11:47:50 ^
11:47:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:50import omero.grid.RawAccessRequest;
11:47:50 ^
11:47:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:51import omero.grid.RawAccessRequest;
11:47:51 ^
11:47:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:47:51import omero.model.ImportJob;
11:47:51 ^
11:47:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:47:51import omero.model.ImportJobI;
11:47:51 ^
11:47:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:47:51 IObject link = (IObject) linkClass.newInstance();
11:47:51 ^
11:47:51 where T is a type-variable:
11:47:51 T extends Object declared in class Class
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:47:52 T copy = (T) obj.getClass().newInstance();
11:47:52 ^
11:47:52 where T is a type-variable:
11:47:52 T extends Object declared in class Class
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:52 RawAccessRequest raw = new RawAccessRequest();
11:47:52 ^
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:52 RawAccessRequest raw = new RawAccessRequest();
11:47:52 ^
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:47:52 raw.repoUuid = legacy.root().getHash().getValue();
11:47:52 ^
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:47:52 raw.command = "rm";
11:47:52 ^
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:47:52 raw.args = Arrays.asList(path);
11:47:52 ^
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:47:52 final IObject link = linkClass.newInstance();
11:47:52 ^
11:47:52 where T is a type-variable:
11:47:52 T extends Object declared in class Class
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:47:52 originalLink.setChild(annotationClass.newInstance());
11:47:52 ^
11:47:52 where T is a type-variable:
11:47:52 T extends Object declared in class Class
11:47:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:47:52 RoiResult r = svc.findByImage(id, new RoiOptions());
11:47:52 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:53 final RawAccessRequest request = new RawAccessRequest();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:53 final RawAccessRequest request = new RawAccessRequest();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:47:53 request.repoUuid = repo.root().getHash().getValue();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:47:53 request.command = "exists";
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:47:53 request.args = Collections.singletonList(dirPath);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:53 final RawAccessRequest request = new RawAccessRequest();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:47:53 final RawAccessRequest request = new RawAccessRequest();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:47:53 request.repoUuid = repo.root().getHash().getValue();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:47:53 request.command = "exists";
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:47:53 request.args = Collections.singletonList(dirName);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:47:53 final ImportJob importJob = new ImportJobI();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:47:53 final ImportJob importJob = new ImportJobI();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:47:53 importJob.setImageName(omero.rtypes.rstring(name));
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:47:53 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:47:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:47:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:47:53 final String savedName = sent.getImageName().getValue().toString();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:47:53 final String savedDesc = sent.getImageDescription().getValue().toString();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:47:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:47:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:47:53 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:47:53 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 RoiResult r = svc.findByImage(image.getId().getValue(),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:47:53 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:47:53 table = svc.getTable(f.getId().getValue());
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 RoiResult r = svc.findByImage(image.getId().getValue(),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:47:53 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:47:53 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:47:53 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
11:47:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:47:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:47:53 svc.getShapeStatsRestricted(
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:47:53 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:47:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:47:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:47:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:47:53 request.typesToIgnore = Collections.singletonList("Annotation");
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:47:53 request.typesToIgnore = Collections.singletonList("Annotation");
11:47:53 ^
11:47:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:47:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:47:53 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:47:54 p2.setRelatedTo(p1);
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:47:54 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:47:54 pixels1.setRelatedTo(pixels2);
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:47:54 Pixels pixels = pixels1.getRelatedTo();
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:47:54 Assert.assertNull(pixels1.getRelatedTo());
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:47:54 pixels1.setRelatedTo(pixels2);
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:47:54 Pixels pixels = pixels1.getRelatedTo();
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:47:54 Assert.assertNull(pixels1.getRelatedTo());
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:54 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:47:54 ^
11:47:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:47:54 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:47:54 ^
11:47:54Note: Some input files use unchecked or unsafe operations.
11:47:54Note: Recompile with -Xlint:unchecked for details.
11:47:5488 warnings
11:47:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_674108212.tmp
11:47:54Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:47:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:47:54:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-586-ad2ef7b5d8-ice36-b31 :: integration :: Fri Jan 23 11:47:46 UTC 2026
11:47:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:47:54:: publishing :: omero#OmeroJava-test
11:47:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-586-ad2ef7b5d8-ice36-b31.jar
11:47:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-586-ad2ef7b5d8-ice36-b31.xml
11:47:5411:47:54build-eclipse:
11:47:54No sub-builds to iterate on
11:47:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:47:5411:47:54retrieve:
11:47:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:47:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:47:5611:47:56prepare:
11:47:56Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:47:5711:47:57release-clients:
11:47:57Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-586-ad2ef7b5d8-ice36-b31.zip
11:48:0211:48:02release-zip:
11:48:02Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-586-ad2ef7b5d8-ice36-b31.zip
11:48:1311:48:13BUILD SUCCESSFUL
11:48:13Total time: 1 minute 21 seconds
11:48:13++ '[' -d .git ']'
11:48:13++ python3 ./build.py release-src
11:48:13Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:48:1311:48:13release-src-git:
11:48:13Releasing openmicroscopy-5.6.3-586-ad2ef7b5d8-ice36-b31
11:48:15 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-586-ad2ef7b5d8-ice36-b31.zip
11:48:15 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-586-ad2ef7b5d8-ice36-b31-base.zip
11:48:1611:48:16BUILD SUCCESSFUL
11:48:16Total time: 3 seconds
11:48:16++ echo BUILD_NUMBER=31
11:48:16++ echo OMERO_BRANCH=merge_ci
11:48:16++ git_info
11:48:16+++ git rev-parse HEAD
11:48:16++ HEAD=ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c
11:48:16++ git log --max-count=1 ad2ef7b5d893e8a1477c9fa8ecc06eedf6f6ba6c
11:48:16++ env
11:48:16++ sort
11:48:16Archiving artifacts
11:48:33Finished: SUCCESS
