00:38:47Started by upstream project "Trigger" build number 5400:38:47originally caused by:
00:38:47 Started by timer
00:38:47Running as SYSTEM
00:38:47Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:38:47The recommended git tool is: NONE
00:38:47No credentials specified
00:38:47 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:38:47Fetching changes from the remote Git repository
00:38:47 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:38:47Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:38:47 > git --version # timeout=10
00:38:47 > git --version # 'git version 2.39.3'
00:38:47 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:38:51 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:38:51Checking out Revision 235ac12ff2fdf5f23c31180136ac532c4a3c32a3 (origin/merge_ci)
00:38:51 > git config core.sparsecheckout # timeout=10
00:38:51 > git checkout -f 235ac12ff2fdf5f23c31180136ac532c4a3c32a3 # timeout=10
00:38:51Commit message: "Add version.properties to etc/omero.properties"
00:38:51 > git rev-list --no-walk 143527625f54ec01820c5d1ecfab1ec99c8d0e5b # timeout=10
00:38:51Cleaning workspace
00:38:51 > git rev-parse --verify HEAD # timeout=10
00:38:51Resetting working tree
00:38:51 > git reset --hard # timeout=10
00:38:51 > git clean -fdx # timeout=10
00:38:54Copied 6 artifacts from "OMERO-python-superbuild-build" build number 4500:38:54[OMERO-build] $ /bin/bash -xe /tmp/jenkins8223664263729012958.sh
00:38:54+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:38:54+ cd src
00:38:54+ export OMERO_BRANCH=merge_ci
00:38:54+ OMERO_BRANCH=merge_ci
00:38:54+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:54+ source /home/omero/settings.env
00:38:54++ OMERO_DB_HOST=pg
00:38:54++ OMERO_DB_USER=postgres
00:38:54++ OMERO_DB_PASS=
00:38:54++ OMERO_ROOT_PASS=omero
00:38:54++ OMERO_DATA_DIR=/OMERO
00:38:54++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:54+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:57+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:38:59Collecting zeroc-ice==3.6.5
00:38:59 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:39:01WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:01You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:39:02Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
00:39:02Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
00:39:02Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:39:02Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:39:02Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:39:02Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:39:02Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:39:02Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:39:02Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:39:02Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:39:02Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:39:02Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:39:02Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:39:02Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:39:02WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:02You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:03+ source docs/hudson/OMERO.sh
00:39:03++ set -e
00:39:03++ set -u
00:39:03++ set -x
00:39:03++ source docs/hudson/functions.sh
00:39:03++ echo Building merge_ci
00:39:03Building merge_ci
00:39:03++ python3 ./build.py build-dev release-all
00:39:03OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:03Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:0400:39:04check-ivy:
00:39:04Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:04Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0600:39:06build-scons:
00:39:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:06No sub-builds to iterate on
00:39:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:0700:39:07buildlist:
00:39:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:0700:39:07clean:
00:39:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:0700:39:07python-clean:
00:39:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:07/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-458-235ac12ff2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:07 warnings.warn(
00:39:07running clean
00:39:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:0700:39:07python-clean:
00:39:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:07/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-458-235ac12ff2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:07 warnings.warn(
00:39:07running clean
00:39:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:0800:39:08python-clean:
00:39:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:08/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-458-235ac12ff2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:08 warnings.warn(
00:39:08running clean
00:39:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:08Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:0800:39:08build-scons:
00:39:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:0800:39:08build:
00:39:08No sub-builds to iterate on
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:0800:39:08tools-init:
00:39:08no-op
00:39:0800:39:08retrieve:
00:39:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:09WARNING: An illegal reflective access operation has occurred
00:39:09WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:39:09WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:39:09WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:39:09WARNING: All illegal access operations will be denied in a future release
00:40:0700:40:07prepare:
00:40:07Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:0700:40:07pre-compile:
00:40:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:0700:40:07compile:
00:40:07no-op
00:40:0700:40:07package:
00:40:07Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:0800:40:08install:
00:40:08:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-458-235ac12ff2-ice36 :: integration :: Sun Apr 28 00:39:08 UTC 2024
00:40:08 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:08:: publishing :: omero#omero_client
00:40:08 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-458-235ac12ff2-ice36/omero_client-5.6.3-458-235ac12ff2-ice36.jar
00:40:08 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-458-235ac12ff2-ice36/omero_client-5.6.3-458-235ac12ff2-ice36.xml
00:40:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:0800:40:08retrieve:
00:40:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:0800:40:08dist:
00:40:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:09Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:09Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:40:09Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:09Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:09Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:0900:40:09copy-licenses:
00:40:09Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:09Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:09Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:0900:40:09copy-history:
00:40:09Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:0900:40:09copy-etc:
00:40:09Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:1000:40:10copy-sql:
00:40:10Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:2600:40:26copy-server:
00:40:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:40:2600:40:26copy-client:
00:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:40:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:40:2700:40:27update-version:
00:40:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:2700:40:27create-workdirs:
00:40:27Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:40:27Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:40:2700:40:27copy-luts:
00:40:27Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:27Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:2800:40:28test-compile:
00:40:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:2800:40:28testng-init:
00:40:28:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:3300:40:33,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:40:3300:40:33,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - No custom configurators were discovered as a service.
00:40:3300:40:33,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:3300:40:33,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:3300:40:33,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:3300:40:33,240 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:3300:40:33,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:3300:40:33,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:3300:40:33,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:3300:40:33,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:3300:40:33,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:3300:40:33,245 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs multiple times on the classpath.
00:40:3300:40:33,245 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:3300:40:33,245 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:3300:40:33,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:3300:40:33,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:3300:40:33,722 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:3300:40:33,724 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:3300:40:33,724 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Please move "immediateFlush" property into the enclosing appender.
00:40:3300:40:33,810 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Setting the "immediateFlush" property of the enclosing appender to true
00:40:3300:40:33,811 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:3300:40:33,812 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:3300:40:33,812 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:3300:40:33,812 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:3300:40:33,812 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:3300:40:33,812 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:3300:40:33,813 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@33ce766b - End of configuration.
00:40:3300:40:33,816 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5bd8b901 - Registering current configuration as safe fallback point
00:40:3300:40:33,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 573 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:3300:40:33lifecycle.test-compile:
00:40:33Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:33Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:34warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37import omero.grid.RawAccessRequest;
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37import omero.grid.RawAccessRequest;
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:37import omero.grid.RawAccessRequest;
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:37import omero.model.ImportJob;
00:40:37 ^
00:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:37import omero.model.ImportJobI;
00:40:37 ^
00:40:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:38 IObject link = (IObject) linkClass.newInstance();
00:40:38 ^
00:40:38 where T is a type-variable:
00:40:38 T extends Object declared in class Class
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:39 T copy = (T) obj.getClass().newInstance();
00:40:39 ^
00:40:39 where T is a type-variable:
00:40:39 T extends Object declared in class Class
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:39 RawAccessRequest raw = new RawAccessRequest();
00:40:39 ^
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:39 RawAccessRequest raw = new RawAccessRequest();
00:40:39 ^
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:39 raw.repoUuid = legacy.root().getHash().getValue();
00:40:39 ^
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:39 raw.command = "rm";
00:40:39 ^
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:39 raw.args = Arrays.asList(path);
00:40:39 ^
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:39 final IObject link = linkClass.newInstance();
00:40:39 ^
00:40:39 where T is a type-variable:
00:40:39 T extends Object declared in class Class
00:40:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:39 originalLink.setChild(annotationClass.newInstance());
00:40:39 ^
00:40:39 where T is a type-variable:
00:40:39 T extends Object declared in class Class
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:40 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:40 final RawAccessRequest request = new RawAccessRequest();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:40 final RawAccessRequest request = new RawAccessRequest();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:40 request.repoUuid = repo.root().getHash().getValue();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:40 request.command = "exists";
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:40 request.args = Collections.singletonList(dirPath);
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:40 final RawAccessRequest request = new RawAccessRequest();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:40 final RawAccessRequest request = new RawAccessRequest();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:40 request.repoUuid = repo.root().getHash().getValue();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:40 request.command = "exists";
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:40 request.args = Collections.singletonList(dirName);
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:40 final ImportJob importJob = new ImportJobI();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:40 final ImportJob importJob = new ImportJobI();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:40 importJob.setImageName(omero.rtypes.rstring(name));
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:40 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:40 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:40 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:40 final String savedName = sent.getImageName().getValue().toString();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:40 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:40 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:40 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:40 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:40 ^
00:40:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:40 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:40 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:41 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:41 table = svc.getTable(f.getId().getValue());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:41 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:41 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:41 svc.getShapeStatsRestricted(
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:41 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:41 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:41 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:41 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:41 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:41 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:41 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:41 p2.setRelatedTo(p1);
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:41 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:41 pixels1.setRelatedTo(pixels2);
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:41 Pixels pixels = pixels1.getRelatedTo();
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:41 Assert.assertNull(pixels1.getRelatedTo());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:41 pixels1.setRelatedTo(pixels2);
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:41 Pixels pixels = pixels1.getRelatedTo();
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:41 Assert.assertNull(pixels1.getRelatedTo());
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:41 ^
00:40:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:41 ^
00:40:42Note: Some input files use unchecked or unsafe operations.
00:40:42Note: Recompile with -Xlint:unchecked for details.
00:40:4288 warnings
00:40:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_714006283.tmp
00:40:42Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:42:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-458-235ac12ff2-ice36 :: integration :: Sun Apr 28 00:40:28 UTC 2024
00:40:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:42:: publishing :: omero#OmeroJava-test
00:40:42 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-458-235ac12ff2-ice36.jar
00:40:42 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-458-235ac12ff2-ice36.xml
00:40:4200:40:42build-eclipse:
00:40:42No sub-builds to iterate on
00:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:4200:40:42retrieve:
00:40:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4500:40:45prepare:
00:40:45Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:4700:40:47release-clients:
00:40:47Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-458-235ac12ff2-ice36.zip
00:40:5200:40:52release-zip:
00:40:52Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-458-235ac12ff2-ice36.zip
00:41:0500:41:05BUILD SUCCESSFUL
00:41:05Total time: 2 minutes 1 second
00:41:05++ '[' -d .git ']'
00:41:05++ python3 ./build.py release-src
00:41:05OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:41:05Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:0500:41:05release-src-git:
00:41:05Releasing openmicroscopy-5.6.3-458-235ac12ff2-ice36
00:41:07 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-458-235ac12ff2-ice36.zip
00:41:07 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-458-235ac12ff2-ice36-base.zip
00:41:0900:41:09BUILD SUCCESSFUL
00:41:09Total time: 3 seconds
00:41:09++ echo BUILD_NUMBER=45
00:41:09++ echo OMERO_BRANCH=merge_ci
00:41:09++ git_info
00:41:09+++ git rev-parse HEAD
00:41:09++ HEAD=235ac12ff2fdf5f23c31180136ac532c4a3c32a3
00:41:09++ git log --max-count=1 235ac12ff2fdf5f23c31180136ac532c4a3c32a3
00:41:09++ env
00:41:09++ sort
00:41:09Archiving artifacts
00:41:38Finished: SUCCESS
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