01:25:54Started by upstream project "Trigger" build number 4501:25:54originally caused by:
01:25:54 Started by timer
01:25:54Running as SYSTEM
01:25:55Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:25:55The recommended git tool is: NONE
01:25:55No credentials specified
01:25:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:25:55Fetching changes from the remote Git repository
01:25:55 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:25:55Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:25:55 > git --version # timeout=10
01:25:55 > git --version # 'git version 2.52.0'
01:25:55 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:26:01 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:26:01Checking out Revision 4b8463ab5a63f15b356132569ca8290423f1cf31 (origin/merge_ci)
01:26:01 > git config core.sparsecheckout # timeout=10
01:26:01 > git checkout -f 4b8463ab5a63f15b356132569ca8290423f1cf31 # timeout=10
01:26:19Commit message: "Add version.properties to etc/omero.properties"
01:26:19 > git rev-list --no-walk 1dea9183a55317fedd32ef237dd1c574a8d7efae # timeout=10
01:26:19Cleaning workspace
01:26:19 > git rev-parse --verify HEAD # timeout=10
01:26:19Resetting working tree
01:26:19 > git reset --hard # timeout=10
01:26:20 > git clean -fdx # timeout=10
01:26:56Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3001:26:57[OMERO-build] $ /bin/bash -xe /tmp/jenkins15701488934933580492.sh
01:26:57+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:26:57+ cd src
01:26:57+ export OMERO_BRANCH=merge_ci
01:26:57+ OMERO_BRANCH=merge_ci
01:26:57+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:26:57+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:27:28+ source /home/omero/settings.env
01:27:28++ OMERO_DB_HOST=pg
01:27:28++ OMERO_DB_USER=postgres
01:27:28++ OMERO_DB_PASS=
01:27:28++ OMERO_ROOT_PASS=omero
01:27:28++ OMERO_DATA_DIR=/OMERO
01:27:28++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:27:28+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:27:48+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:27:49Collecting zeroc-ice==3.6.5
01:27:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:27:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.7 MB/s eta 0:00:00
01:27:53Installing collected packages: zeroc-ice
01:27:56Successfully installed zeroc-ice-3.6.5
01:27:5601:27:56[notice] A new release of pip available: 22.3.1 -> 26.2
01:27:56[notice] To update, run: python3.11 -m pip install --upgrade pip
01:27:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:27:57Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:27:57Collecting setuptools<66
01:27:58 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:27:58Collecting omero-py
01:27:58 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:27:58Collecting appdirs
01:27:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:27:58Collecting future
01:27:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:27:59Collecting numpy<3,>=2
01:27:59 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:28:00Collecting Pillow>=10.0.0
01:28:00 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:28:00Collecting PyYAML
01:28:00 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:28:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:28:00Collecting requests
01:28:00 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:28:00Collecting portalocker
01:28:00 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:28:01Collecting charset_normalizer<4,>=2
01:28:01 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:28:01Collecting idna<4,>=2.5
01:28:01 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:28:01Collecting urllib3<3,>=1.26
01:28:01 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:28:01Collecting certifi>=2023.5.7
01:28:01 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:28:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:28:03 Attempting uninstall: setuptools
01:28:03 Found existing installation: setuptools 65.5.1
01:28:03 Uninstalling setuptools-65.5.1:
01:28:04 Successfully uninstalled setuptools-65.5.1
01:28:56Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:28:5601:28:56[notice] A new release of pip available: 22.3.1 -> 26.2
01:28:56[notice] To update, run: python3.11 -m pip install --upgrade pip
01:28:56+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:28:56++ deactivate nondestructive
01:28:56++ '[' -n '' ']'
01:28:56++ '[' -n '' ']'
01:28:56++ hash -r
01:28:56++ '[' -n '' ']'
01:28:56++ unset VIRTUAL_ENV
01:28:56++ unset VIRTUAL_ENV_PROMPT
01:28:56++ '[' '!' nondestructive = nondestructive ']'
01:28:56++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:28:56++ export VIRTUAL_ENV
01:28:56++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:28:56++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:28:56++ export PATH
01:28:56++ '[' -n '' ']'
01:28:56++ '[' -z '' ']'
01:28:56++ _OLD_VIRTUAL_PS1=
01:28:56++ PS1='(omero-virtualenv) '
01:28:56++ export PS1
01:28:56++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:28:56++ export VIRTUAL_ENV_PROMPT
01:28:56++ hash -r
01:28:56+ source docs/hudson/OMERO.sh
01:28:56++ set -e
01:28:56++ set -u
01:28:56++ set -x
01:28:56++ source docs/hudson/functions.sh
01:28:56++ echo Building merge_ci
01:28:56Building merge_ci
01:28:56++ python3 ./build.py build-dev release-all
01:28:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:28:5701:28:57check-ivy:
01:28:57Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:28:57Created dir: /home/omero/workspace/OMERO-build/src/target
01:28:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:5901:28:59build-scons:
01:28:59Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:29:01No sub-builds to iterate on
01:29:01Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:29:0201:29:02buildlist:
01:29:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:0201:29:02clean:
01:29:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:0301:29:03python-clean:
01:29:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:29:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-634-4b8463ab5a-ice36-b36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:29:03 warnings.warn(
01:29:03running clean
01:29:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:29:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:0401:29:04python-clean:
01:29:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:29:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-634-4b8463ab5a-ice36-b36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:29:04 warnings.warn(
01:29:04running clean
01:29:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:29:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:0601:29:06python-clean:
01:29:06WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:29:06/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-634-4b8463ab5a-ice36-b36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:29:06 warnings.warn(
01:29:06running clean
01:29:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:29:06Deleting directory /home/omero/workspace/OMERO-build/src/target
01:29:0701:29:07build-scons:
01:29:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:29:0901:29:09build:
01:29:09No sub-builds to iterate on
01:29:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:1101:29:11tools-init:
01:29:11no-op
01:29:1101:29:11retrieve:
01:29:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:31:0701:31:07prepare:
01:31:07Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:31:07Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:31:07Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:31:0701:31:07pre-compile:
01:31:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:31:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:31:56Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:2601:32:26compile:
01:32:26no-op
01:32:2601:32:26package:
01:32:26Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:32:3101:32:31install:
01:32:31:: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-634-4b8463ab5a-ice36-b36 :: integration :: Wed Aug 05 01:29:10 UTC 2026
01:32:31 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:32:31:: publishing :: omero#omero_client
01:32:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-634-4b8463ab5a-ice36-b36/omero_client-5.6.3-634-4b8463ab5a-ice36-b36.jar
01:32:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-634-4b8463ab5a-ice36-b36/omero_client-5.6.3-634-4b8463ab5a-ice36-b36.xml
01:32:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:3301:32:33retrieve:
01:32:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:32:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:32:34Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:32:3401:32:34dist:
01:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:32:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:32:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:32:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:32:37Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:32:40Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:32:40Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:32:41Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:32:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:32:4201:32:42copy-licenses:
01:32:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:32:43Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:32:43Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:32:4501:32:45copy-history:
01:32:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:32:4501:32:45copy-etc:
01:32:45Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:32:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:32:5101:32:51copy-sql:
01:32:51Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:33:1501:33:15copy-server:
01:33:15 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:33:2801:33:28copy-client:
01:33:28Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:33:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:33:4501:33:45update-version:
01:33:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:33:4501:33:45create-workdirs:
01:33:45Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:33:45Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:33:45Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:33:4501:33:45copy-luts:
01:33:45Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:33:45Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:33:4601:33:46test-compile:
01:33:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:33:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:33:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:33:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:33:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:33:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:33:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:33:4901:33:49testng-init:
01:33:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:33:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:34:0101:34:01,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:34:0101:34:01,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - No custom configurators were discovered as a service.
01:34:0101:34:01,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:34:0101:34:01,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:34:0101:34:01,245 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:34:0101:34:01,247 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:34:0101:34:01,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:34:0101:34:01,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:34:0101:34:01,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:34:0101:34:01,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:34:0101:34:01,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:34:0101:34:01,257 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6aa09c35 - Resource [logback.xml] occurs multiple times on the classpath.
01:34:0101:34:01,257 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6aa09c35 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:34:0101:34:01,257 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6aa09c35 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:34:0101:34:01,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:34:0101:34:01,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:34:0101:34:01,508 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:34:0101:34:01,510 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@22457838 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:34:0101:34:01,510 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@22457838 - Please move "immediateFlush" property into the enclosing appender.
01:34:0101:34:01,582 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@22457838 - Setting the "immediateFlush" property of the enclosing appender to true
01:34:0101:34:01,583 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:34:0101:34:01,583 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:34:0101:34:01,583 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:34:0101:34:01,583 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:34:0101:34:01,584 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:34:0101:34:01,584 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:34:0101:34:01,585 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a9794bd - End of configuration.
01:34:0101:34:01,587 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@297727ab - Registering current configuration as safe fallback point
01:34:0101:34:01,587 |-INFO in ch.qos.logback.classic.util.ContextInitializer@390d47db - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 337 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:34:0101:34:01lifecycle.test-compile:
01:34:01Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:34:01Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:34:02warning: [options] bootstrap class path not set in conjunction with -source 8
01:34:02warning: [options] source value 8 is obsolete and will be removed in a future release
01:34:02warning: [options] target value 8 is obsolete and will be removed in a future release
01:34:02warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:34:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:03import omero.grid.RawAccessRequest;
01:34:03 ^
01:34:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:04import omero.grid.RawAccessRequest;
01:34:04 ^
01:34:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:04import omero.grid.RawAccessRequest;
01:34:04 ^
01:34:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:34:04import omero.model.ImportJob;
01:34:04 ^
01:34:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:34:04import omero.model.ImportJobI;
01:34:04 ^
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:34:07 IObject link = (IObject) linkClass.newInstance();
01:34:07 ^
01:34:07 where T is a type-variable:
01:34:07 T extends Object declared in class Class
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:34:07 T copy = (T) obj.getClass().newInstance();
01:34:07 ^
01:34:07 where T is a type-variable:
01:34:07 T extends Object declared in class Class
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:07 RawAccessRequest raw = new RawAccessRequest();
01:34:07 ^
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:07 RawAccessRequest raw = new RawAccessRequest();
01:34:07 ^
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:34:07 raw.repoUuid = legacy.root().getHash().getValue();
01:34:07 ^
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:34:07 raw.command = "rm";
01:34:07 ^
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:34:07 raw.args = Arrays.asList(path);
01:34:07 ^
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:34:07 final IObject link = linkClass.newInstance();
01:34:07 ^
01:34:07 where T is a type-variable:
01:34:07 T extends Object declared in class Class
01:34:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:34:07 originalLink.setChild(annotationClass.newInstance());
01:34:07 ^
01:34:07 where T is a type-variable:
01:34:07 T extends Object declared in class Class
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:34:08 RoiResult r = svc.findByImage(id, new RoiOptions());
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:08 final RawAccessRequest request = new RawAccessRequest();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:08 final RawAccessRequest request = new RawAccessRequest();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:34:08 request.repoUuid = repo.root().getHash().getValue();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:34:08 request.command = "exists";
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:34:08 request.args = Collections.singletonList(dirPath);
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:08 final RawAccessRequest request = new RawAccessRequest();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:34:08 final RawAccessRequest request = new RawAccessRequest();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:34:08 request.repoUuid = repo.root().getHash().getValue();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:34:08 request.command = "exists";
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:34:08 request.args = Collections.singletonList(dirName);
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:34:08 final ImportJob importJob = new ImportJobI();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:34:08 final ImportJob importJob = new ImportJobI();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:34:08 importJob.setImageName(omero.rtypes.rstring(name));
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:34:08 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:34:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:34:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:34:08 final String savedName = sent.getImageName().getValue().toString();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:34:08 final String savedDesc = sent.getImageDescription().getValue().toString();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:34:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:34:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:34:08 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:34:08 ^
01:34:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:34:08 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:34:08 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 RoiResult r = svc.findByImage(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:34:09 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:34:09 table = svc.getTable(f.getId().getValue());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 RoiResult r = svc.findByImage(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:34:09 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:34:09 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:34:09 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:34:09 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:34:09 svc.getShapeStatsRestricted(
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:34:09 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:34:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:34:09 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:34:09 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:34:09 request.typesToIgnore = Collections.singletonList("Annotation");
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:34:09 request.typesToIgnore = Collections.singletonList("Annotation");
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:34:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:34:09 p2.setRelatedTo(p1);
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:34:09 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:34:09 pixels1.setRelatedTo(pixels2);
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:34:09 Pixels pixels = pixels1.getRelatedTo();
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:34:09 Assert.assertNull(pixels1.getRelatedTo());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:34:09 pixels1.setRelatedTo(pixels2);
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:34:09 Pixels pixels = pixels1.getRelatedTo();
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:34:09 Assert.assertNull(pixels1.getRelatedTo());
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:34:09 ^
01:34:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:34:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:34:09 ^
01:34:10Note: Some input files use unchecked or unsafe operations.
01:34:10Note: Recompile with -Xlint:unchecked for details.
01:34:1091 warnings
01:34:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1862846755.tmp
01:34:10Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:34:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:34:10:: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-634-4b8463ab5a-ice36-b36 :: integration :: Wed Aug 05 01:33:48 UTC 2026
01:34:10 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:34:10:: publishing :: omero#OmeroJava-test
01:34:10 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-634-4b8463ab5a-ice36-b36.jar
01:34:10 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-634-4b8463ab5a-ice36-b36.xml
01:34:1101:34:11build-eclipse:
01:34:11No sub-builds to iterate on
01:34:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:34:1101:34:11retrieve:
01:34:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:34:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:34:1601:34:16prepare:
01:34:16Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:34:2001:34:20release-clients:
01:34:20Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:34:2601:34:26release-zip:
01:34:26Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:34:3801:34:38BUILD SUCCESSFUL
01:34:38Total time: 5 minutes 42 seconds
01:34:38++ '[' -d .git ']'
01:34:38++ python3 ./build.py release-src
01:34:38Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:34:3901:34:39release-src-git:
01:34:39Releasing openmicroscopy-5.6.3-634-4b8463ab5a-ice36-b36
01:34:41 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:34:41 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-634-4b8463ab5a-ice36-b36-base.zip
01:34:4301:34:43BUILD SUCCESSFUL
01:34:43Total time: 4 seconds
01:34:43++ echo BUILD_NUMBER=36
01:34:43++ echo OMERO_BRANCH=merge_ci
01:34:43++ git_info
01:34:43+++ git rev-parse HEAD
01:34:43++ HEAD=4b8463ab5a63f15b356132569ca8290423f1cf31
01:34:43++ git log --max-count=1 4b8463ab5a63f15b356132569ca8290423f1cf31
01:34:43++ env
01:34:43++ sort
01:34:43Archiving artifacts
01:35:00Finished: SUCCESS
