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01:28:30 Started by upstream project "Trigger" build number 50
01:28:30 originally caused by:
01:28:30  Started by timer
01:28:30 Running as SYSTEM
01:28:30 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:28:30 The recommended git tool is: NONE
01:28:30 No credentials specified
01:28:30  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:28:30 Fetching changes from the remote Git repository
01:28:30  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:28:30 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
01:28:30  > git --version # timeout=10
01:28:30  > git --version # 'git version 2.52.0'
01:28:30  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:28:35  > git rev-parse origin/merge_ci^{commit} # timeout=10
01:28:35 Checking out Revision 0caf401757f756ad76a05b3639eabff1b1bc807a (origin/merge_ci)
01:28:35  > git config core.sparsecheckout # timeout=10
01:28:35  > git checkout -f 0caf401757f756ad76a05b3639eabff1b1bc807a # timeout=10
01:28:39 Commit message: "Add version.properties to etc/omero.properties"
01:28:39  > git rev-list --no-walk 6b1553d6d9a6135b813af6ae08c54a852513f308 # timeout=10
01:28:40 Cleaning workspace
01:28:40  > git rev-parse --verify HEAD # timeout=10
01:28:40 Resetting working tree
01:28:40  > git reset --hard # timeout=10
01:28:40  > git clean -fdx # timeout=10
01:29:09 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 35
01:29:09 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7153232923418475021.sh
01:29:09 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:29:09 + cd src
01:29:09 + export OMERO_BRANCH=merge_ci
01:29:09 + OMERO_BRANCH=merge_ci
01:29:09 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:29:09 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:29:44 + source /home/omero/settings.env
01:29:44 ++ OMERO_DB_HOST=pg
01:29:44 ++ OMERO_DB_USER=postgres
01:29:44 ++ OMERO_DB_PASS=
01:29:44 ++ OMERO_ROOT_PASS=omero
01:29:44 ++ OMERO_DATA_DIR=/OMERO
01:29:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:29:44 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:30:20 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:30:21 Collecting zeroc-ice==3.6.5
01:30:21   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:30:35      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 881.9 kB/s eta 0:00:00
01:30:35 Installing collected packages: zeroc-ice
01:30:38 Successfully installed zeroc-ice-3.6.5
01:30:39 
01:30:39 [notice] A new release of pip available: 22.3.1 -> 26.2.1
01:30:39 [notice] To update, run: python3.11 -m pip install --upgrade pip
01:30:39 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:30:40 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:30:41 Collecting setuptools<66
01:30:41   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:30:41 Collecting omero-py
01:30:41   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:30:41 Collecting appdirs
01:30:41   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:30:41 Collecting future
01:30:41   Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:30:42 Collecting numpy<3,>=2
01:30:42   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:30:43 Collecting Pillow>=10.0.0
01:30:43   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:30:43 Collecting PyYAML
01:30:43   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:30:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:30:43 Collecting requests
01:30:44   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:30:44 Collecting portalocker
01:30:44   Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:30:44 Collecting charset_normalizer<4,>=2
01:30:44   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:30:44 Collecting idna<4,>=2.5
01:30:44   Using cached idna-3.18-py3-none-any.whl (65 kB)
01:30:45 Collecting urllib3<3,>=1.26
01:30:45   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:30:45 Collecting certifi>=2023.5.7
01:30:45   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:30:45 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:30:49   Attempting uninstall: setuptools
01:30:49     Found existing installation: setuptools 65.5.1
01:30:49     Uninstalling setuptools-65.5.1:
01:30:50       Successfully uninstalled setuptools-65.5.1
01:34:08 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:34:08 
01:34:08 [notice] A new release of pip available: 22.3.1 -> 26.2.1
01:34:08 [notice] To update, run: python3.11 -m pip install --upgrade pip
01:34:08 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:34:08 ++ deactivate nondestructive
01:34:08 ++ '[' -n '' ']'
01:34:08 ++ '[' -n '' ']'
01:34:08 ++ hash -r
01:34:08 ++ '[' -n '' ']'
01:34:08 ++ unset VIRTUAL_ENV
01:34:08 ++ unset VIRTUAL_ENV_PROMPT
01:34:08 ++ '[' '!' nondestructive = nondestructive ']'
01:34:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:34:08 ++ export VIRTUAL_ENV
01:34:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:34:08 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:34:08 ++ export PATH
01:34:08 ++ '[' -n '' ']'
01:34:08 ++ '[' -z '' ']'
01:34:08 ++ _OLD_VIRTUAL_PS1=
01:34:08 ++ PS1='(omero-virtualenv) '
01:34:08 ++ export PS1
01:34:08 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:34:08 ++ export VIRTUAL_ENV_PROMPT
01:34:08 ++ hash -r
01:34:08 + source docs/hudson/OMERO.sh
01:34:08 ++ set -e
01:34:08 ++ set -u
01:34:08 ++ set -x
01:34:08 ++ source docs/hudson/functions.sh
01:34:08 ++ echo Building merge_ci
01:34:08 Building merge_ci
01:34:08 ++ python3 ./build.py build-dev release-all
01:34:08 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:34:09 
01:34:09 check-ivy:
01:34:09 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:34:09 Created dir: /home/omero/workspace/OMERO-build/src/target
01:34:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:34:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:34:11 
01:34:11 build-scons:
01:34:11 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:34:22 No sub-builds to iterate on
01:34:23 Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:34:23 
01:34:23 buildlist:
01:34:23 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:34:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:34:24 
01:34:24 clean:
01:34:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:34:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:34:25 
01:34:25 python-clean:
01:34:25 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:34:25 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-0caf401757-ice36-b42') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:34:25   warnings.warn(
01:34:25 running clean
01:34:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:34:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:34:26 
01:34:26 python-clean:
01:34:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:34:26 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-0caf401757-ice36-b42') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:34:26   warnings.warn(
01:34:26 running clean
01:34:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:34:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:34:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:34:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:34:28 
01:34:28 python-clean:
01:34:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:34:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-0caf401757-ice36-b42') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:34:28   warnings.warn(
01:34:28 running clean
01:34:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:34:28 Deleting directory /home/omero/workspace/OMERO-build/src/target
01:34:29 
01:34:29 build-scons:
01:34:29 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:34:38 
01:34:38 build:
01:34:38 No sub-builds to iterate on
01:34:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:34:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:34:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:34:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:34:40 
01:34:40 tools-init:
01:34:40 no-op
01:34:40 
01:34:40 retrieve:
01:34:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:34:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:36:03 
01:36:03 prepare:
01:36:03 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:36:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:36:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:36:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:36:03 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:36:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:36:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:36:04 
01:36:04 pre-compile:
01:36:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:05 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:15 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:36:23 
01:36:23 compile:
01:36:23 no-op
01:36:23 
01:36:23 package:
01:36:23 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:36:27 
01:36:27 install:
01:36:27 :: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-0caf401757-ice36-b42 :: integration :: Sun Aug 09 01:34:40 UTC 2026
01:36:27 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:36:27 :: publishing :: omero#omero_client
01:36:27 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-0caf401757-ice36-b42/omero_client-5.6.3-643-0caf401757-ice36-b42.jar
01:36:27 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-0caf401757-ice36-b42/omero_client-5.6.3-643-0caf401757-ice36-b42.xml
01:36:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:36:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:36:29 
01:36:29 retrieve:
01:36:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:36:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:36:30 Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:36:30 
01:36:30 dist:
01:36:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:36:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:36:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:36:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:36:30 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:36:31 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:36:31 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:36:31 Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:36:32 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:36:33 
01:36:33 copy-licenses:
01:36:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:36:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:36:33 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:36:33 
01:36:33 copy-history:
01:36:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:36:33 
01:36:33 copy-etc:
01:36:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:36:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:36:34 
01:36:34 copy-sql:
01:36:34 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:36:47 
01:36:47 copy-server:
01:36:47 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:36:52 
01:36:52 copy-client:
01:36:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:36:56 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:37:01 
01:37:01 update-version:
01:37:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:37:01 
01:37:01 create-workdirs:
01:37:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:37:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:37:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:37:01 
01:37:01 copy-luts:
01:37:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:37:01 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:37:02 
01:37:02 test-compile:
01:37:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:37:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:37:03 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:37:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:37:04 
01:37:04 testng-init:
01:37:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:37:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:37:13 01:37:13,516 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:37:13 01:37:13,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - No custom configurators were discovered as a service.
01:37:13 01:37:13,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:37:13 01:37:13,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:37:13 01:37:13,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:37:13 01:37:13,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:37:13 01:37:13,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:37:13 01:37:13,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:37:13 01:37:13,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:37:13 01:37:13,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:37:13 01:37:13,538 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:37:13 01:37:13,540 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs multiple times on the classpath.
01:37:13 01:37:13,540 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:37:13 01:37:13,540 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:37:13 01:37:13,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:37:13 01:37:13,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:37:13 01:37:13,840 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:37:13 01:37:13,843 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:37:13 01:37:13,843 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Please move "immediateFlush" property into the enclosing appender.
01:37:13 01:37:13,926 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Setting the "immediateFlush" property of the enclosing appender to true
01:37:13 01:37:13,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:37:13 01:37:13,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:37:13 01:37:13,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:37:13 01:37:13,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:37:13 01:37:13,928 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:37:13 01:37:13,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:37:13 01:37:13,929 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47585784 - End of configuration.
01:37:13 01:37:13,932 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4e5563ef - Registering current configuration as safe fallback point
01:37:13 01:37:13,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 398 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:37:13 
01:37:13 lifecycle.test-compile:
01:37:13 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:37:14 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:37:14 warning: [options] bootstrap class path not set in conjunction with -source 8
01:37:14 warning: [options] source value 8 is obsolete and will be removed in a future release
01:37:14 warning: [options] target value 8 is obsolete and will be removed in a future release
01:37:14 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:37:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:16 import omero.grid.RawAccessRequest;
01:37:16                  ^
01:37:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:16 import omero.grid.RawAccessRequest;
01:37:16                  ^
01:37:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:16 import omero.grid.RawAccessRequest;
01:37:16                  ^
01:37:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:37:16 import omero.model.ImportJob;
01:37:16                   ^
01:37:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:37:16 import omero.model.ImportJobI;
01:37:16                   ^
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:37:17         IObject link = (IObject) linkClass.newInstance();
01:37:17                                           ^
01:37:17   where T is a type-variable:
01:37:17     T extends Object declared in class Class
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:37:17         T copy = (T) obj.getClass().newInstance();
01:37:17                                    ^
01:37:17   where T is a type-variable:
01:37:17     T extends Object declared in class Class
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:17         RawAccessRequest raw = new RawAccessRequest();
01:37:17         ^
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:17         RawAccessRequest raw = new RawAccessRequest();
01:37:17                                    ^
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:37:17         raw.repoUuid = legacy.root().getHash().getValue();
01:37:17            ^
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:37:17         raw.command = "rm";
01:37:17            ^
01:37:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:37:17         raw.args = Arrays.asList(path);
01:37:17            ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:37:18         final IObject link = linkClass.newInstance();
01:37:18                                       ^
01:37:18   where T is a type-variable:
01:37:18     T extends Object declared in class Class
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:37:18             originalLink.setChild(annotationClass.newInstance());
01:37:18                                                  ^
01:37:18   where T is a type-variable:
01:37:18     T extends Object declared in class Class
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:37:18         RoiResult r = svc.findByImage(id, new RoiOptions());
01:37:18                          ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:18         final RawAccessRequest request = new RawAccessRequest();
01:37:18               ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:18         final RawAccessRequest request = new RawAccessRequest();
01:37:18                                              ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:37:18         request.repoUuid = repo.root().getHash().getValue();
01:37:18                ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:37:18         request.command = "exists";
01:37:18                ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:37:18         request.args = Collections.singletonList(dirPath);
01:37:18                ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:18         final RawAccessRequest request = new RawAccessRequest();
01:37:18               ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:37:18         final RawAccessRequest request = new RawAccessRequest();
01:37:18                                              ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:37:18         request.repoUuid = repo.root().getHash().getValue();
01:37:18                ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:37:18         request.command = "exists";
01:37:18                ^
01:37:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:37:18         request.args = Collections.singletonList(dirName);
01:37:18                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:37:19         final ImportJob importJob = new ImportJobI();
01:37:19               ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:37:19         final ImportJob importJob = new ImportJobI();
01:37:19                                         ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:37:19         importJob.setImageName(omero.rtypes.rstring(name));
01:37:19                  ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:37:19         importJob.setImageDescription(omero.rtypes.rstring(desc));
01:37:19                  ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:37:19         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:37:19         ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:37:19         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:37:19                           ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:37:19         final String savedName = sent.getImageName().getValue().toString();
01:37:19                                      ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:37:19         final String savedDesc = sent.getImageDescription().getValue().toString();
01:37:19                                      ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:37:19         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:37:19               ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:37:19         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:37:19                                               ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:37:19         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:37:19         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         RoiResult r = svc.findByImage(image.getId().getValue(),
01:37:19                          ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:37:19                                 ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:37:19                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:37:19                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:37:19                                 ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:37:19         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:37:19                                          ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:37:19                                 ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:37:19         table = svc.getTable(f.getId().getValue());
01:37:19                    ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         RoiResult r = svc.findByImage(image.getId().getValue(),
01:37:19                          ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:37:19                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:37:19         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:37:19                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:37:19         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:37:19                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:37:19         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:37:19                ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:37:19                   ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:37:19                                   ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:37:19                                    ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:37:19                                                    ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:37:19             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:37:19                                       ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:37:19                                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:37:19                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:37:19                                                         ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:37:19                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:37:19                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:37:19                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:37:19                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:37:19         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:37:19                                                        ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:37:19                 svc.getShapeStatsRestricted(
01:37:19                    ^
01:37:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:37:19         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:37:19                                        ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:37:20         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:37:20                                      ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:37:20         request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:37:20                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:37:20         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:37:20                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:37:20         request.typesToIgnore = Collections.singletonList("Annotation");
01:37:20                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:37:20                     request.typesToIgnore = Collections.singletonList("Annotation");
01:37:20                            ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:37:20         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:37:20                                      ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:37:20         p2.setRelatedTo(p1);
01:37:20           ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:37:20         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:37:20                                           ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:37:20         pixels1.setRelatedTo(pixels2);
01:37:20                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:37:20         Pixels pixels = pixels1.getRelatedTo();
01:37:20                                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:37:20         Assert.assertNull(pixels1.getRelatedTo());
01:37:20                                  ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:37:20         pixels1.setRelatedTo(pixels2);
01:37:20                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:37:20         Pixels pixels = pixels1.getRelatedTo();
01:37:20                                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:37:20         Assert.assertNull(pixels1.getRelatedTo());
01:37:20                                  ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:20         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:37:20                                 ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:20         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:37:20                ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:20         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:37:20                                 ^
01:37:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:37:20         l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:37:20                ^
01:37:21 Note: Some input files use unchecked or unsafe operations.
01:37:21 Note: Recompile with -Xlint:unchecked for details.
01:37:21 91 warnings
01:37:21 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1399995661.tmp
01:37:21 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:37:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:37:21 :: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-0caf401757-ice36-b42 :: integration :: Sun Aug 09 01:37:03 UTC 2026
01:37:21 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:37:21 :: publishing :: omero#OmeroJava-test
01:37:21 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-0caf401757-ice36-b42.jar
01:37:21 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-0caf401757-ice36-b42.xml
01:37:21 
01:37:21 build-eclipse:
01:37:21 No sub-builds to iterate on
01:37:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:37:22 
01:37:22 retrieve:
01:37:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:37:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:37:27 
01:37:27 prepare:
01:37:27 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:37:31 
01:37:31 release-clients:
01:37:31 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-643-0caf401757-ice36-b42.zip
01:37:37 
01:37:37 release-zip:
01:37:37 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-643-0caf401757-ice36-b42.zip
01:37:48 
01:37:48 BUILD SUCCESSFUL
01:37:48 Total time: 3 minutes 40 seconds
01:37:48 ++ '[' -d .git ']'
01:37:48 ++ python3 ./build.py release-src
01:37:48 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:37:50 
01:37:50 release-src-git:
01:37:50 Releasing openmicroscopy-5.6.3-643-0caf401757-ice36-b42
01:37:51   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-0caf401757-ice36-b42.zip
01:37:51   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-0caf401757-ice36-b42-base.zip
01:37:53 
01:37:53 BUILD SUCCESSFUL
01:37:53 Total time: 4 seconds
01:37:53 ++ echo BUILD_NUMBER=42
01:37:53 ++ echo OMERO_BRANCH=merge_ci
01:37:53 ++ git_info
01:37:53 +++ git rev-parse HEAD
01:37:53 ++ HEAD=0caf401757f756ad76a05b3639eabff1b1bc807a
01:37:53 ++ git log --max-count=1 0caf401757f756ad76a05b3639eabff1b1bc807a
01:37:53 ++ env
01:37:53 ++ sort
01:37:53 Archiving artifacts
01:38:11 Finished: SUCCESS