01:25:20Started by upstream project "Trigger" build number 5401:25:20originally caused by:
01:25:20 Started by timer
01:25:20Running as SYSTEM
01:25:20Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:25:20The recommended git tool is: NONE
01:25:20No credentials specified
01:25:20 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:25:20Fetching changes from the remote Git repository
01:25:20 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:25:20Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:25:20 > git --version # timeout=10
01:25:20 > git --version # 'git version 2.52.0'
01:25:20 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:25:25 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:25:25Checking out Revision 8780fae9dbca7d09ea3b5f5f592111213ff948fb (origin/merge_ci)
01:25:25 > git config core.sparsecheckout # timeout=10
01:25:25 > git checkout -f 8780fae9dbca7d09ea3b5f5f592111213ff948fb # timeout=10
01:25:28Commit message: "Add version.properties to etc/omero.properties"
01:25:28 > git rev-list --no-walk 1eb24c506717327f70f5c28b09d57c024d060f13 # timeout=10
01:25:28Cleaning workspace
01:25:28 > git rev-parse --verify HEAD # timeout=10
01:25:28Resetting working tree
01:25:28 > git reset --hard # timeout=10
01:25:28 > git clean -fdx # timeout=10
01:25:57Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3901:25:57[OMERO-build] $ /bin/bash -xe /tmp/jenkins14760307157639565151.sh
01:25:57+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:25:57+ cd src
01:25:57+ export OMERO_BRANCH=merge_ci
01:25:57+ OMERO_BRANCH=merge_ci
01:25:57+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:25:57+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:26:27+ source /home/omero/settings.env
01:26:27++ OMERO_DB_HOST=pg
01:26:27++ OMERO_DB_USER=postgres
01:26:27++ OMERO_DB_PASS=
01:26:27++ OMERO_ROOT_PASS=omero
01:26:27++ OMERO_DATA_DIR=/OMERO
01:26:27++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:26:27+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:26:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:26:48Collecting zeroc-ice==3.6.5
01:26:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:26:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.0 MB/s eta 0:00:00
01:26:52Installing collected packages: zeroc-ice
01:26:55Successfully installed zeroc-ice-3.6.5
01:26:5501:26:55[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:26:55[notice] To update, run: python3.11 -m pip install --upgrade pip
01:26:55+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:26:56Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:26:57Collecting setuptools<66
01:26:57 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:26:57Collecting omero-py
01:26:57 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:26:57Collecting appdirs
01:26:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:26:57Collecting future
01:26:57 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:26:58Collecting numpy<3,>=2
01:26:58 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:26:59Collecting Pillow>=10.0.0
01:26:59 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:26:59Collecting PyYAML
01:26:59 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:26:59Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:26:59Collecting requests
01:26:59 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:26:59Collecting portalocker
01:26:59 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:27:00Collecting charset_normalizer<4,>=2
01:27:00 Downloading charset_normalizer-3.5.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (261 kB)
01:27:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 261.8/261.8 kB 2.6 MB/s eta 0:00:00
01:27:00Collecting idna<4,>=2.5
01:27:00 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:27:00Collecting urllib3<3,>=1.26
01:27:00 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:27:00Collecting certifi>=2023.5.7
01:27:01 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:27:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:27:02 Attempting uninstall: setuptools
01:27:02 Found existing installation: setuptools 65.5.1
01:27:03 Uninstalling setuptools-65.5.1:
01:27:03 Successfully uninstalled setuptools-65.5.1
01:27:54Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.0 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:27:5401:27:54[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:27:54[notice] To update, run: python3.11 -m pip install --upgrade pip
01:27:54+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:27:54++ deactivate nondestructive
01:27:54++ '[' -n '' ']'
01:27:54++ '[' -n '' ']'
01:27:54++ hash -r
01:27:54++ '[' -n '' ']'
01:27:54++ unset VIRTUAL_ENV
01:27:54++ unset VIRTUAL_ENV_PROMPT
01:27:54++ '[' '!' nondestructive = nondestructive ']'
01:27:54++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:27:54++ export VIRTUAL_ENV
01:27:54++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:27:54++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:27:54++ export PATH
01:27:54++ '[' -n '' ']'
01:27:54++ '[' -z '' ']'
01:27:54++ _OLD_VIRTUAL_PS1=
01:27:54++ PS1='(omero-virtualenv) '
01:27:54++ export PS1
01:27:54++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:27:54++ export VIRTUAL_ENV_PROMPT
01:27:54++ hash -r
01:27:54+ source docs/hudson/OMERO.sh
01:27:54++ set -e
01:27:54++ set -u
01:27:54++ set -x
01:27:54++ source docs/hudson/functions.sh
01:27:54++ echo Building merge_ci
01:27:54Building merge_ci
01:27:54++ python3 ./build.py build-dev release-all
01:27:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:27:5601:27:56check-ivy:
01:27:56Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:27:56Created dir: /home/omero/workspace/OMERO-build/src/target
01:27:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:5801:27:58build-scons:
01:27:58Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:27:59No sub-builds to iterate on
01:28:00Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:28:0001:28:00buildlist:
01:28:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:0101:28:01clean:
01:28:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:0201:28:02python-clean:
01:28:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:28:02/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-8780fae9db-ice36-b46') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:28:02 warnings.warn(
01:28:02running clean
01:28:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:28:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:28:0301:28:03python-clean:
01:28:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:28:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-8780fae9db-ice36-b46') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:28:03 warnings.warn(
01:28:03running clean
01:28:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:0401:28:04python-clean:
01:28:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:28:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-8780fae9db-ice36-b46') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:28:16 warnings.warn(
01:28:16running clean
01:28:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:28:16Deleting directory /home/omero/workspace/OMERO-build/src/target
01:28:1601:28:16build-scons:
01:28:16Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:28:1601:28:16build:
01:28:16No sub-builds to iterate on
01:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:28:1601:28:16tools-init:
01:28:16no-op
01:28:1601:28:16retrieve:
01:28:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:5301:28:53prepare:
01:28:53Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:28:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:28:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:28:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:28:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:28:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:5401:28:54pre-compile:
01:28:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:55Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:29:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:29:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:29:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:29:1001:29:10compile:
01:29:10no-op
01:29:1001:29:10package:
01:29:10Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:29:1501:29:15install:
01:29:15:: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-8780fae9db-ice36-b46 :: integration :: Thu Aug 13 01:28:08 UTC 2026
01:29:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:29:15:: publishing :: omero#omero_client
01:29:15 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-8780fae9db-ice36-b46/omero_client-5.6.3-643-8780fae9db-ice36-b46.jar
01:29:15 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-8780fae9db-ice36-b46/omero_client-5.6.3-643-8780fae9db-ice36-b46.xml
01:29:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:1601:29:16retrieve:
01:29:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:17Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:29:1701:29:17dist:
01:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:29:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:29:17Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:29:18Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:29:18Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:29:19Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:29:19Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:29:2001:29:20copy-licenses:
01:29:20Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:29:20Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:29:20Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:29:2001:29:20copy-history:
01:29:20Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:29:2001:29:20copy-etc:
01:29:20Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:29:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:29:2101:29:21copy-sql:
01:29:21Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:29:3301:29:33copy-server:
01:29:33 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:29:3801:29:38copy-client:
01:29:38Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:29:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:29:4701:29:47update-version:
01:29:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:29:4701:29:47create-workdirs:
01:29:47Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:29:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:29:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:29:4701:29:47copy-luts:
01:29:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:29:47Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:29:4701:29:47test-compile:
01:29:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:29:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:5001:29:50testng-init:
01:29:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:5901:29:58,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:29:5901:29:58,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service.
01:29:5901:29:58,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:29:5901:29:58,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:29:5901:29:58,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:29:5901:29:58,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:29:5901:29:58,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:29:5901:29:58,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:29:5901:29:58,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:29:5901:29:58,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:29:5901:29:58,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:29:5901:29:58,858 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath.
01:29:5901:29:58,858 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:29:5901:29:58,858 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:29:5901:29:59,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:29:5901:29:59,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:29:5901:29:59,115 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:29:5901:29:59,117 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:29:5901:29:59,117 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender.
01:29:5901:29:59,191 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true
01:29:5901:29:59,192 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:29:5901:29:59,192 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:29:5901:29:59,192 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:29:5901:29:59,192 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:29:5901:29:59,192 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:29:5901:29:59,192 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:29:5901:29:59,194 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration.
01:29:5901:29:59,196 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point
01:29:5901:29:59,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:29:5901:29:59lifecycle.test-compile:
01:29:59Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:29:59Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:29:59warning: [options] bootstrap class path not set in conjunction with -source 8
01:29:59warning: [options] source value 8 is obsolete and will be removed in a future release
01:29:59warning: [options] target value 8 is obsolete and will be removed in a future release
01:29:59warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:01import omero.grid.RawAccessRequest;
01:30:01 ^
01:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:01import omero.grid.RawAccessRequest;
01:30:01 ^
01:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:02import omero.grid.RawAccessRequest;
01:30:02 ^
01:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:30:02import omero.model.ImportJob;
01:30:02 ^
01:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:30:02import omero.model.ImportJobI;
01:30:02 ^
01:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:30:02 IObject link = (IObject) linkClass.newInstance();
01:30:02 ^
01:30:02 where T is a type-variable:
01:30:02 T extends Object declared in class Class
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:30:03 T copy = (T) obj.getClass().newInstance();
01:30:03 ^
01:30:03 where T is a type-variable:
01:30:03 T extends Object declared in class Class
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:03 RawAccessRequest raw = new RawAccessRequest();
01:30:03 ^
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:03 RawAccessRequest raw = new RawAccessRequest();
01:30:03 ^
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:30:03 raw.repoUuid = legacy.root().getHash().getValue();
01:30:03 ^
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:30:03 raw.command = "rm";
01:30:03 ^
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:30:03 raw.args = Arrays.asList(path);
01:30:03 ^
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:30:03 final IObject link = linkClass.newInstance();
01:30:03 ^
01:30:03 where T is a type-variable:
01:30:03 T extends Object declared in class Class
01:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:30:03 originalLink.setChild(annotationClass.newInstance());
01:30:03 ^
01:30:03 where T is a type-variable:
01:30:03 T extends Object declared in class Class
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:30:04 RoiResult r = svc.findByImage(id, new RoiOptions());
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:04 final RawAccessRequest request = new RawAccessRequest();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:04 final RawAccessRequest request = new RawAccessRequest();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:30:04 request.repoUuid = repo.root().getHash().getValue();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:30:04 request.command = "exists";
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:30:04 request.args = Collections.singletonList(dirPath);
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:04 final RawAccessRequest request = new RawAccessRequest();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:30:04 final RawAccessRequest request = new RawAccessRequest();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:30:04 request.repoUuid = repo.root().getHash().getValue();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:30:04 request.command = "exists";
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:30:04 request.args = Collections.singletonList(dirName);
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:30:04 final ImportJob importJob = new ImportJobI();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:30:04 final ImportJob importJob = new ImportJobI();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:30:04 importJob.setImageName(omero.rtypes.rstring(name));
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:30:04 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:30:04 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:30:04 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:30:04 final String savedName = sent.getImageName().getValue().toString();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:30:04 final String savedDesc = sent.getImageDescription().getValue().toString();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:30:04 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:30:04 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:30:04 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:30:04 ^
01:30:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:30:04 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:30:04 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 RoiResult r = svc.findByImage(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:30:05 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:30:05 table = svc.getTable(f.getId().getValue());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 RoiResult r = svc.findByImage(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:30:05 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:30:05 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:30:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:30:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:30:05 svc.getShapeStatsRestricted(
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:30:05 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:30:05 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:30:05 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:30:05 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:30:05 request.typesToIgnore = Collections.singletonList("Annotation");
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:30:05 request.typesToIgnore = Collections.singletonList("Annotation");
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:30:05 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:30:05 p2.setRelatedTo(p1);
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:30:05 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:30:05 pixels1.setRelatedTo(pixels2);
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:30:05 Pixels pixels = pixels1.getRelatedTo();
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:30:05 Assert.assertNull(pixels1.getRelatedTo());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:30:05 pixels1.setRelatedTo(pixels2);
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:30:05 Pixels pixels = pixels1.getRelatedTo();
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:30:05 Assert.assertNull(pixels1.getRelatedTo());
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:30:05 ^
01:30:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:30:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:30:05 ^
01:30:06Note: Some input files use unchecked or unsafe operations.
01:30:06Note: Recompile with -Xlint:unchecked for details.
01:30:0691 warnings
01:30:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1654459466.tmp
01:30:06Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:30:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:30:06:: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-8780fae9db-ice36-b46 :: integration :: Thu Aug 13 01:29:49 UTC 2026
01:30:06 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:30:06:: publishing :: omero#OmeroJava-test
01:30:06 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-8780fae9db-ice36-b46.jar
01:30:06 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-8780fae9db-ice36-b46.xml
01:30:0601:30:06build-eclipse:
01:30:06No sub-builds to iterate on
01:30:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:30:0701:30:07retrieve:
01:30:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:30:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:30:1701:30:17prepare:
01:30:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:30:3601:30:36release-clients:
01:30:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-643-8780fae9db-ice36-b46.zip
01:30:4201:30:42release-zip:
01:30:42Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-643-8780fae9db-ice36-b46.zip
01:30:5401:30:54BUILD SUCCESSFUL
01:30:54Total time: 2 minutes 59 seconds
01:30:54++ '[' -d .git ']'
01:30:54++ python3 ./build.py release-src
01:30:54Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:30:5501:30:55release-src-git:
01:30:55Releasing openmicroscopy-5.6.3-643-8780fae9db-ice36-b46
01:30:57 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-8780fae9db-ice36-b46.zip
01:30:57 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-8780fae9db-ice36-b46-base.zip
01:30:5901:30:59BUILD SUCCESSFUL
01:30:59Total time: 4 seconds
01:30:59++ echo BUILD_NUMBER=46
01:30:59++ echo OMERO_BRANCH=merge_ci
01:30:59++ git_info
01:30:59+++ git rev-parse HEAD
01:30:59++ HEAD=8780fae9dbca7d09ea3b5f5f592111213ff948fb
01:30:59++ git log --max-count=1 8780fae9dbca7d09ea3b5f5f592111213ff948fb
01:30:59++ env
01:30:59++ sort
01:30:59Archiving artifacts
01:31:16Finished: SUCCESS
