![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 53 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor on ‘testintegration’ Running on testintegration in /home/omero/workspace/OMERO-guides-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-guides-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master) > git config core.sparsecheckout # timeout=10 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 Commit message: "Merge pull request #17 from jburel/python3" > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 06eaa16a203dcfe3e22546549d40185a79f25ac7 (refs/remotes/origin/master) > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-guides-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-guides.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-guides.git > git --version # timeout=10 > git --version # 'git version 2.39.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-guides.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 06eaa16a203dcfe3e22546549d40185a79f25ac7 # timeout=10 Commit message: "Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c" > git rev-list --no-walk 06eaa16a203dcfe3e22546549d40185a79f25ac7 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.cellprofiler.url # timeout=10 > git config -f .gitmodules --get submodule.cellprofiler.path # timeout=10 > git config --get submodule.matlab.url # timeout=10 > git config -f .gitmodules --get submodule.matlab.path # timeout=10 > git config --get submodule.qupath.url # timeout=10 > git config -f .gitmodules --get submodule.qupath.path # timeout=10 > git config --get submodule.fiji.url # timeout=10 > git config -f .gitmodules --get submodule.fiji.path # timeout=10 > git config --get submodule.orbit.url # timeout=10 > git config -f .gitmodules --get submodule.orbit.path # timeout=10 > git config --get submodule.r.url # timeout=10 > git config -f .gitmodules --get submodule.r.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git config --get submodule.trackmate.url # timeout=10 > git config -f .gitmodules --get submodule.trackmate.path # timeout=10 > git config --get submodule.python.url # timeout=10 > git config -f .gitmodules --get submodule.python.path # timeout=10 > git config --get submodule.parade.url # timeout=10 > git config -f .gitmodules --get submodule.parade.path # timeout=10 > git config --get submodule.fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.fpbioimage.path # timeout=10 > git config --get submodule.iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.iviewer.path # timeout=10 > git config --get submodule.upload.url # timeout=10 > git config -f .gitmodules --get submodule.upload.path # timeout=10 > git config --get submodule.ilastik.url # timeout=10 > git config -f .gitmodules --get submodule.ilastik.path # timeout=10 > git config --get submodule.introduction.url # timeout=10 > git config -f .gitmodules --get submodule.introduction.path # timeout=10 > git config --get submodule.download.url # timeout=10 > git config -f .gitmodules --get submodule.download.path # timeout=10 > git config --get submodule.java.url # timeout=10 > git config -f .gitmodules --get submodule.java.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.mde.url # timeout=10 > git config -f .gitmodules --get submodule.mde.path # timeout=10 > git submodule update --init --recursive cellprofiler # timeout=10 > git submodule update --init --recursive matlab # timeout=10 > git submodule update --init --recursive qupath # timeout=10 > git submodule update --init --recursive fiji # timeout=10 > git submodule update --init --recursive orbit # timeout=10 > git submodule update --init --recursive r # timeout=10 > git submodule update --init --recursive figure # timeout=10 > git submodule update --init --recursive trackmate # timeout=10 [Pipeline] pwd [Pipeline] sh + mkdir -p build + echo build [Pipeline] sh > git submodule update --init --recursive python # timeout=10 > git submodule update --init --recursive parade # timeout=10 > git submodule update --init --recursive fpbioimage # timeout=10 > git submodule update --init --recursive iviewer # timeout=10 > git submodule update --init --recursive upload # timeout=10 > git submodule update --init --recursive ilastik # timeout=10 > git submodule update --init --recursive introduction # timeout=10 > git submodule update --init --recursive download # timeout=10 > git submodule update --init --recursive java # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive mde # timeout=10 + pushd build ~/workspace/OMERO-guides-push/build ~/workspace/OMERO-guides-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-guides-push + python3 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + python3 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-24.0-py3-none-any.whl (2.1 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-24.0 + python3 -m pip install scc Collecting scc Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Using cached scc-0.19.1-py3-none-any.whl (48 kB) Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB) Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB) Using cached idna-3.7-py3-none-any.whl (66 kB) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.5 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.11.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-guides.git + BASE_REPO=omero-guides.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2024-04-27 01:00:23,982 [ scc.config] DEBUG Found github.token 2024-04-27 01:00:23,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-04-27 01:00:24,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:00:24,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:00:25,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-04-27 01:00:25,028 [ scc.gh] DEBUG 2298 remaining from 5000 (Reset at 01:04 2024-04-27 01:00:25,028 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:25,033 [ scc.git] DEBUG Check current status 2024-04-27 01:00:25,033 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:25,037 [ scc.git] DEBUG 06eaa16 Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c 2024-04-27 01:00:25,037 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:25,079 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb) 2024-04-27 01:00:25,087 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912) 2024-04-27 01:00:25,090 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b) 2024-04-27 01:00:25,093 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a) 2024-04-27 01:00:25,102 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master) 2024-04-27 01:00:25,105 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7) 2024-04-27 01:00:25,113 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master) 2024-04-27 01:00:25,122 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master) 2024-04-27 01:00:25,124 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55) 2024-04-27 01:00:25,128 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c) 2024-04-27 01:00:25,136 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master) 2024-04-27 01:00:25,145 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master) 2024-04-27 01:00:25,153 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1) 2024-04-27 01:00:25,156 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f) 2024-04-27 01:00:25,165 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master) 2024-04-27 01:00:25,168 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10) 2024-04-27 01:00:25,176 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce) 2024-04-27 01:00:25,185 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master) 2024-04-27 01:00:25,188 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341) 2024-04-27 01:00:25,192 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:25,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None 2024-04-27 01:00:25,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:26,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:26,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:27,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:27,337 [ scc.git] DEBUG Resetting... 2024-04-27 01:00:27,338 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-04-27 01:00:27,347 [ scc.git] DEBUG HEAD is now at 06eaa16 Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c 2024-04-27 01:00:27,347 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-04-27 01:00:27,443 [ scc.git] DEBUG Check current status 2024-04-27 01:00:27,443 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:27,449 [ scc.git] DEBUG 06eaa16 Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c 2024-04-27 01:00:27,449 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:27,491 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb) 2024-04-27 01:00:27,499 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912) 2024-04-27 01:00:27,502 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b) 2024-04-27 01:00:27,505 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a) 2024-04-27 01:00:27,514 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master) 2024-04-27 01:00:27,516 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7) 2024-04-27 01:00:27,524 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master) 2024-04-27 01:00:27,532 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master) 2024-04-27 01:00:27,535 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55) 2024-04-27 01:00:27,538 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c) 2024-04-27 01:00:27,546 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master) 2024-04-27 01:00:27,554 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master) 2024-04-27 01:00:27,563 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1) 2024-04-27 01:00:27,566 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f) 2024-04-27 01:00:27,574 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master) 2024-04-27 01:00:27,577 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10) 2024-04-27 01:00:27,590 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce) 2024-04-27 01:00:27,602 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master) 2024-04-27 01:00:27,605 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341) 2024-04-27 01:00:27,606 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-04-27 01:00:27,606 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-04-27 01:00:27,606 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-04-27 01:00:27,606 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-04-27 01:00:27,606 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-04-27 01:00:27,606 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:00:27,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None 2024-04-27 01:00:27,873 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:00:27,874 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:00:27,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:00:27,878 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:00:27,881 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:00:27,881 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:00:27,885 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:00:27,889 [ scc.git] DEBUG Already up to date. 2024-04-27 01:00:27,889 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:00:27,889 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:00:27,889 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:00:27,893 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:00:27,941 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:00:27,941 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:00:27,945 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:00:28,643 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f525cbba460> has no local changes 2024-04-27 01:00:28,643 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-guides Excluded PRs: - PR 23 jburel 'Remove submodules' (exclude comment) Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:00:28,704 [ scc.git] DEBUG [detached HEAD 264e487] merge master -Dorg -Snone 2024-04-27 01:00:28,705 [ scc.merge] INFO Repository: ome/omero-guides 2024-04-27 01:00:28,705 [ scc.merge] INFO Excluded PRs: 2024-04-27 01:00:28,705 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment) 2024-04-27 01:00:28,705 [ scc.merge] INFO Already up to date. 2024-04-27 01:00:28,705 [ scc.merge] INFO 2024-04-27 01:00:28,705 [ scc.merge] INFO 2024-04-27 01:00:28,705 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-04-27 01:00:28,705 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'cellprofiler' Synchronizing submodule url for 'download' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'fiji' Synchronizing submodule url for 'fpbioimage' Synchronizing submodule url for 'ilastik' Synchronizing submodule url for 'introduction' Synchronizing submodule url for 'iviewer' Synchronizing submodule url for 'java' Synchronizing submodule url for 'matlab' Synchronizing submodule url for 'mde' Synchronizing submodule url for 'orbit' Synchronizing submodule url for 'parade' Synchronizing submodule url for 'python' Synchronizing submodule url for 'qupath' Synchronizing submodule url for 'r' Synchronizing submodule url for 'scripts' Synchronizing submodule url for 'trackmate' Synchronizing submodule url for 'upload' Submodule path 'download': checked out 'a27d196bee4a96b586246dc5d94ef07db7c5c0f8' Submodule path 'parade': checked out '908b3356722bb23aafe103d87f8675f80fbaa5ed' Submodule path 'scripts': checked out 'bb21e02683ea51ea8fd0e2e86b605f694767c36b' Merge all submodules2024-04-27 01:00:36,598 [ scc.config] DEBUG Found github.token 2024-04-27 01:00:36,601 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-04-27 01:00:36,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:00:37,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:00:37,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-04-27 01:00:37,641 [ scc.gh] DEBUG 4992 remaining from 5000 (Reset at 02:04 2024-04-27 01:00:37,642 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:37,647 [ scc.git] DEBUG Check current status 2024-04-27 01:00:37,647 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:37,651 [ scc.git] DEBUG 264e487 merge master -Dorg -Snone 2024-04-27 01:00:37,651 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:37,690 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb) 2024-04-27 01:00:37,698 [ scc.git] DEBUG +a27d196bee4a96b586246dc5d94ef07db7c5c0f8 download (heads/master) 2024-04-27 01:00:37,701 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b) 2024-04-27 01:00:37,704 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a) 2024-04-27 01:00:37,712 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master) 2024-04-27 01:00:37,715 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7) 2024-04-27 01:00:37,723 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master) 2024-04-27 01:00:37,731 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master) 2024-04-27 01:00:37,733 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55) 2024-04-27 01:00:37,736 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c) 2024-04-27 01:00:37,744 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master) 2024-04-27 01:00:37,752 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master) 2024-04-27 01:00:37,760 [ scc.git] DEBUG +908b3356722bb23aafe103d87f8675f80fbaa5ed parade (heads/master) 2024-04-27 01:00:37,763 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f) 2024-04-27 01:00:37,771 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master) 2024-04-27 01:00:37,773 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10) 2024-04-27 01:00:37,781 [ scc.git] DEBUG +bb21e02683ea51ea8fd0e2e86b605f694767c36b scripts (heads/master) 2024-04-27 01:00:37,789 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master) 2024-04-27 01:00:37,792 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341) 2024-04-27 01:00:37,796 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:38,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None 2024-04-27 01:00:38,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:39,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:39,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:39,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:39,936 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:40,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler 2024-04-27 01:00:40,011 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:40,015 [ scc.git] DEBUG Check current status 2024-04-27 01:00:40,016 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:40,020 [ scc.git] DEBUG 248e8cb Merge pull request #23 from jburel/rtd_build 2024-04-27 01:00:40,020 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:40,061 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:40,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler HTTP/1.1" 200 None 2024-04-27 01:00:40,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:41,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:41,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:42,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:42,168 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:42,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:42,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download 2024-04-27 01:00:42,212 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:42,217 [ scc.git] DEBUG Check current status 2024-04-27 01:00:42,217 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:42,222 [ scc.git] DEBUG a27d196 Fix build failure on rtd 2024-04-27 01:00:42,222 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:42,267 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:42,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download HTTP/1.1" 200 None 2024-04-27 01:00:43,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:43,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:43,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:44,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:44,371 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:44,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:44,413 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure 2024-04-27 01:00:44,413 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:44,418 [ scc.git] DEBUG Check current status 2024-04-27 01:00:44,418 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:44,423 [ scc.git] DEBUG 654d43b Merge pull request #16 from jburel/rtd_build 2024-04-27 01:00:44,423 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:44,473 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:44,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure HTTP/1.1" 200 None 2024-04-27 01:00:45,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:45,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:46,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:46,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:46,584 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:46,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:46,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji 2024-04-27 01:00:46,626 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:46,631 [ scc.git] DEBUG Check current status 2024-04-27 01:00:46,631 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:46,636 [ scc.git] DEBUG 218b05a Merge pull request #32 from jburel/link 2024-04-27 01:00:46,636 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:46,676 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:47,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji HTTP/1.1" 200 None 2024-04-27 01:00:47,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:47,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:48,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:48,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:48,849 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:48,891 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:48,893 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage 2024-04-27 01:00:48,893 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:48,898 [ scc.git] DEBUG Check current status 2024-04-27 01:00:48,898 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:48,902 [ scc.git] DEBUG 8f4b103 remove sphinx job following migration to rtd 2024-04-27 01:00:48,902 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:48,943 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:49,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage HTTP/1.1" 200 None 2024-04-27 01:00:49,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:50,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:50,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:51,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:51,040 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:51,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:51,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik 2024-04-27 01:00:51,090 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:51,095 [ scc.git] DEBUG Check current status 2024-04-27 01:00:51,096 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:51,101 [ scc.git] DEBUG 6789cf7 Remove sphinx badge 2024-04-27 01:00:51,102 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:51,147 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:51,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik HTTP/1.1" 200 None 2024-04-27 01:00:51,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:52,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:52,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:53,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:53,257 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:53,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:53,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction 2024-04-27 01:00:53,302 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:53,308 [ scc.git] DEBUG Check current status 2024-04-27 01:00:53,309 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:53,313 [ scc.git] DEBUG d903363 Merge pull request #26 from jburel/rtd_build 2024-04-27 01:00:53,313 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:53,356 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:53,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction HTTP/1.1" 200 None 2024-04-27 01:00:54,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:54,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:55,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:55,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:55,474 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:55,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:55,515 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer 2024-04-27 01:00:55,516 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:55,521 [ scc.git] DEBUG Check current status 2024-04-27 01:00:55,522 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:55,526 [ scc.git] DEBUG 6ed80b3 Merge pull request #13 from jburel/rtd_build 2024-04-27 01:00:55,526 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:55,567 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:55,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer HTTP/1.1" 200 None 2024-04-27 01:00:56,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:56,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:57,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:57,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:57,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:57,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:57,772 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java 2024-04-27 01:00:57,772 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:57,777 [ scc.git] DEBUG Check current status 2024-04-27 01:00:57,777 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:57,781 [ scc.git] DEBUG a4b6b55 Remove badge for sphinx 2024-04-27 01:00:57,781 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:57,830 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:00:58,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java HTTP/1.1" 200 None 2024-04-27 01:00:58,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:00:59,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:00:59,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:00:59,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:00:59,897 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:00:59,936 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:00:59,937 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab 2024-04-27 01:00:59,937 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:00:59,941 [ scc.git] DEBUG Check current status 2024-04-27 01:00:59,942 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:00:59,946 [ scc.git] DEBUG ecbd07c Merge pull request #5 from pwalczysko/matlab-online 2024-04-27 01:00:59,946 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:00:59,990 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:00,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab HTTP/1.1" 200 None 2024-04-27 01:01:00,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:01,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:01,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:02,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:02,107 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:02,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:02,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde 2024-04-27 01:01:02,152 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:02,158 [ scc.git] DEBUG Check current status 2024-04-27 01:01:02,158 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:02,163 [ scc.git] DEBUG d43e17f Merge pull request #5 from jburel/rtd_build 2024-04-27 01:01:02,163 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:02,205 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:02,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde HTTP/1.1" 200 None 2024-04-27 01:01:03,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:03,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:03,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:04,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:04,377 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:04,423 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:04,424 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit 2024-04-27 01:01:04,424 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:04,430 [ scc.git] DEBUG Check current status 2024-04-27 01:01:04,430 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:04,435 [ scc.git] DEBUG 4ef1eaa Update actions to v3 and v4 2024-04-27 01:01:04,435 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:04,476 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:04,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit HTTP/1.1" 200 None 2024-04-27 01:01:05,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:05,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:06,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:06,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:06,615 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:06,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:06,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade 2024-04-27 01:01:06,655 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:06,660 [ scc.git] DEBUG Check current status 2024-04-27 01:01:06,661 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:06,665 [ scc.git] DEBUG 908b335 Merge pull request #1 from ome/rtd_build 2024-04-27 01:01:06,665 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:06,705 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:07,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade HTTP/1.1" 200 None 2024-04-27 01:01:07,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:08,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:08,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:08,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:08,850 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:08,891 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:08,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python 2024-04-27 01:01:08,892 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:08,898 [ scc.git] DEBUG Check current status 2024-04-27 01:01:08,898 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:08,904 [ scc.git] DEBUG e046b1f Merge pull request #57 from jburel/windows 2024-04-27 01:01:08,904 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:08,954 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:09,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python HTTP/1.1" 200 None 2024-04-27 01:01:09,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:10,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:10,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:11,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:11,109 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:11,149 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:11,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath 2024-04-27 01:01:11,150 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:11,155 [ scc.git] DEBUG Check current status 2024-04-27 01:01:11,155 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:11,160 [ scc.git] DEBUG 6db8b1c Merge pull request #11 from jburel/installation 2024-04-27 01:01:11,160 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:11,204 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:11,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath HTTP/1.1" 200 None 2024-04-27 01:01:12,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:12,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:12,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:13,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:13,365 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:13,418 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:13,419 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r 2024-04-27 01:01:13,419 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:13,425 [ scc.git] DEBUG Check current status 2024-04-27 01:01:13,425 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:13,431 [ scc.git] DEBUG a770a10 Remove sphinx badge 2024-04-27 01:01:13,431 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:13,477 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:13,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r HTTP/1.1" 200 None 2024-04-27 01:01:14,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:14,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:15,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:15,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:15,578 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:15,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:15,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts 2024-04-27 01:01:15,629 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:15,636 [ scc.git] DEBUG Check current status 2024-04-27 01:01:15,637 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:15,644 [ scc.git] DEBUG bb21e02 Merge pull request #2 from jburel/rtd_build 2024-04-27 01:01:15,644 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:15,694 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:16,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts HTTP/1.1" 200 None 2024-04-27 01:01:16,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:16,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:17,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:17,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:17,763 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:17,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:17,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate 2024-04-27 01:01:17,809 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:17,814 [ scc.git] DEBUG Check current status 2024-04-27 01:01:17,815 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:17,820 [ scc.git] DEBUG ffe98a8 Merge pull request #5 from jburel/rtd_build 2024-04-27 01:01:17,820 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:17,865 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:18,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate HTTP/1.1" 200 None 2024-04-27 01:01:18,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:19,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:19,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:20,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:20,048 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:20,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:20,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload 2024-04-27 01:01:20,094 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-04-27 01:01:20,099 [ scc.git] DEBUG Check current status 2024-04-27 01:01:20,099 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:20,104 [ scc.git] DEBUG 72df341 Merge pull request #17 from jburel/rtd_build 2024-04-27 01:01:20,105 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:20,148 [ scc.config] DEBUG Found remote.origin.url 2024-04-27 01:01:20,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload HTTP/1.1" 200 None 2024-04-27 01:01:21,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-04-27 01:01:21,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-04-27 01:01:21,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-04-27 01:01:22,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-04-27 01:01:22,314 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:22,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:22,370 [ scc.git] DEBUG Resetting... 2024-04-27 01:01:22,370 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-04-27 01:01:22,384 [ scc.git] DEBUG HEAD is now at 264e487 merge master -Dorg -Snone 2024-04-27 01:01:22,384 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-04-27 01:01:22,438 [ scc.git] DEBUG Submodule path 'download': checked out '4b1b912438f7415faf2d1f618d596968121bcfe8' 2024-04-27 01:01:22,484 [ scc.git] DEBUG Submodule path 'parade': checked out '0875cf1cbb43411bfd5849763da8fe7d2bdafdc0' 2024-04-27 01:01:22,508 [ scc.git] DEBUG Submodule path 'scripts': checked out 'f5038ce4ec273382ea60b19e2432f171ed88375d' 2024-04-27 01:01:22,518 [ scc.git] DEBUG Check current status 2024-04-27 01:01:22,518 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-04-27 01:01:22,525 [ scc.git] DEBUG 264e487 merge master -Dorg -Snone 2024-04-27 01:01:22,525 [ scc.git] DEBUG Calling 'git submodule status' 2024-04-27 01:01:22,572 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb) 2024-04-27 01:01:22,581 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912) 2024-04-27 01:01:22,584 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b) 2024-04-27 01:01:22,587 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a) 2024-04-27 01:01:22,596 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master) 2024-04-27 01:01:22,598 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7) 2024-04-27 01:01:22,607 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master) 2024-04-27 01:01:22,615 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master) 2024-04-27 01:01:22,618 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55) 2024-04-27 01:01:22,620 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c) 2024-04-27 01:01:22,629 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master) 2024-04-27 01:01:22,638 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master) 2024-04-27 01:01:22,647 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1) 2024-04-27 01:01:22,650 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f) 2024-04-27 01:01:22,659 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master) 2024-04-27 01:01:22,662 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10) 2024-04-27 01:01:22,670 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce) 2024-04-27 01:01:22,679 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master) 2024-04-27 01:01:22,681 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341) 2024-04-27 01:01:22,682 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-04-27 01:01:22,683 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-04-27 01:01:22,683 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-04-27 01:01:22,683 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-04-27 01:01:22,683 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-04-27 01:01:22,683 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-04-27 01:01:22,683 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:22,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None 2024-04-27 01:01:22,954 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:22,954 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:22,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:22,962 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:22,967 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:22,967 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:22,977 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:22,983 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:22,983 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:22,983 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:22,983 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:22,988 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:23,047 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:23,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:23,053 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:23,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/pulls HTTP/1.1" 200 None 2024-04-27 01:01:24,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24 HTTP/1.1" 200 None 2024-04-27 01:01:24,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24/comments HTTP/1.1" 200 None 2024-04-27 01:01:25,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None 2024-04-27 01:01:25,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:26,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-04-27 01:01:26,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None 2024-04-27 01:01:26,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/statuses/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:27,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None 2024-04-27 01:01:27,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/status HTTP/1.1" 200 None 2024-04-27 01:01:27,948 [ scc.repo] DEBUG - PR 24 jburel 'Remove binder' 2024-04-27 01:01:27,948 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:27,949 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler 2024-04-27 01:01:27,949 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:27,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:27,955 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:27,960 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:27,960 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:27,966 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:27,971 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:27,971 [ scc.git] DEBUG Calling 'git fetch origin pull/24/head' 2024-04-27 01:01:28,582 [ scc.git] DEBUG From https://github.com/ome/omero-guide-cellprofiler 2024-04-27 01:01:28,582 [ scc.git] DEBUG * branch refs/pull/24/head -> FETCH_HEAD 2024-04-27 01:01:28,587 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:28,587 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:28,588 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:28,594 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25' 2024-04-27 01:01:28,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:28,618 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 24 (Remove binder) 647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25' 2024-04-27 01:01:28,655 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-04-27 01:01:28,658 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 ------------------------- 2024-04-27 01:01:28,658 [ scc.git] DEBUG .github/workflows/build.yml | 27 +++++++++++++++++++++++++++ 2024-04-27 01:01:28,658 [ scc.git] DEBUG README.md | 15 ++++++--------- 2024-04-27 01:01:28,658 [ scc.git] DEBUG binder/environment.yml | 6 ++++-- 2024-04-27 01:01:28,658 [ scc.git] DEBUG 4 files changed, 37 insertions(+), 36 deletions(-) 2024-04-27 01:01:28,658 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml 2024-04-27 01:01:28,660 [ scc.git] DEBUG create mode 100644 .github/workflows/build.yml 2024-04-27 01:01:28,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:01:28,821 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:28,865 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:28,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:28,875 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:28,933 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:28,940 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae150193a0> has no local changes 2024-04-27 01:01:28,940 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-cellprofiler Already up to date. Merged PRs: - PR 24 jburel 'Remove binder' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:28,949 [ scc.git] DEBUG [detached HEAD 4df2806] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:28,949 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:28,949 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:29,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download/pulls HTTP/1.1" 200 2 2024-04-27 01:01:29,260 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:29,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download 2024-04-27 01:01:29,260 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:29,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:29,267 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:29,271 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:29,271 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:29,277 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:29,287 [ scc.git] DEBUG Updating 4b1b912..a27d196 2024-04-27 01:01:29,288 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:29,288 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:29,288 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:29,293 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:29,331 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:29,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:29,336 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:29,376 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:29,381 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae16063f70> has no local changes 2024-04-27 01:01:29,382 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-download Updating 4b1b912..a27d196 Previously merged: Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:29,391 [ scc.git] DEBUG [detached HEAD 3603e3e] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:29,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:29,391 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:29,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/pulls HTTP/1.1" 200 None 2024-04-27 01:01:30,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14 HTTP/1.1" 200 None 2024-04-27 01:01:30,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14/comments HTTP/1.1" 200 None 2024-04-27 01:01:31,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None 2024-04-27 01:01:31,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:32,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None 2024-04-27 01:01:32,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/statuses/c2e5919f88d844ffea560784b7a800c655ff0743?per_page=1 HTTP/1.1" 200 2 2024-04-27 01:01:32,621 [ scc.repo] DEBUG - PR 14 will-moore 'Table data by roi' 2024-04-27 01:01:32,621 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:32,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure 2024-04-27 01:01:32,621 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:32,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:32,627 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:32,632 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:32,632 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:32,639 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:32,645 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:32,645 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2024-04-27 01:01:33,074 [ scc.git] DEBUG From https://github.com/ome/omero-guide-figure 2024-04-27 01:01:33,074 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2024-04-27 01:01:33,080 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:33,081 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:33,081 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:33,086 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c2e5919f88d844ffea560784b7a800c655ff0743' 2024-04-27 01:01:33,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:33,096 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Table data by roi) c2e5919f88d844ffea560784b7a800c655ff0743' 2024-04-27 01:01:33,105 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-04-27 01:01:33,107 [ scc.git] DEBUG docs/omero_figure_scripting.rst | 20 ++++++++++---------- 2024-04-27 01:01:33,107 [ scc.git] DEBUG scripts/figure_table_data_shapes.js | 12 ++++++++---- 2024-04-27 01:01:33,107 [ scc.git] DEBUG 2 files changed, 18 insertions(+), 14 deletions(-) 2024-04-27 01:01:33,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:01:33,264 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:33,307 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:33,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:33,313 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:33,355 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:33,364 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae1502a280> has no local changes 2024-04-27 01:01:33,365 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-figure Already up to date. Merged PRs: - PR 14 will-moore 'Table data by roi' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:33,375 [ scc.git] DEBUG [detached HEAD 7aafbf6] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:33,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:33,376 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:33,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/pulls HTTP/1.1" 200 None 2024-04-27 01:01:34,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24 HTTP/1.1" 200 None 2024-04-27 01:01:34,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24/comments HTTP/1.1" 200 None 2024-04-27 01:01:34,778 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:34,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji 2024-04-27 01:01:34,779 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:34,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:34,785 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:34,792 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:34,792 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:34,799 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:34,806 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:34,806 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:34,807 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:34,807 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:34,812 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:34,854 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:34,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:34,861 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:34,902 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:34,909 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae16063e80> has no local changes 2024-04-27 01:01:34,910 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-fiji Excluded PRs: - PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway) Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:34,930 [ scc.git] DEBUG [detached HEAD 4ccad09] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:34,931 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:34,931 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:35,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage/pulls HTTP/1.1" 200 2 2024-04-27 01:01:35,209 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:35,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage 2024-04-27 01:01:35,209 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:35,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:35,214 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:35,219 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:35,220 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:35,224 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:35,229 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:35,229 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:35,229 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:35,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:35,233 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:35,269 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:35,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:35,274 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:35,312 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:35,318 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae147c0490> has no local changes 2024-04-27 01:01:35,319 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-fpbioimage Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:35,326 [ scc.git] DEBUG [detached HEAD 4caded5] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:35,326 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:35,327 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:35,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/pulls HTTP/1.1" 200 2 2024-04-27 01:01:35,640 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:35,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik 2024-04-27 01:01:35,640 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:35,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:35,645 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:35,649 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:35,649 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:35,655 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:35,660 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:35,660 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:35,660 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:35,660 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:35,664 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:35,701 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:35,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:35,707 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:35,749 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:35,756 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae1476f5b0> has no local changes 2024-04-27 01:01:35,756 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-ilastik Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:35,766 [ scc.git] DEBUG [detached HEAD f33c697] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:35,766 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:35,766 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:36,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction/pulls HTTP/1.1" 200 2 2024-04-27 01:01:36,071 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:36,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction 2024-04-27 01:01:36,072 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:36,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:36,077 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:36,082 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:36,082 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:36,087 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:36,092 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:36,092 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:36,092 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:36,093 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:36,097 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:36,133 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:36,133 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:36,137 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:36,174 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:36,180 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae14780a90> has no local changes 2024-04-27 01:01:36,180 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-introduction Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:36,188 [ scc.git] DEBUG [detached HEAD 293870e] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:36,188 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:36,188 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:36,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer/pulls HTTP/1.1" 200 2 2024-04-27 01:01:36,495 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:36,495 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer 2024-04-27 01:01:36,496 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:36,496 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:36,501 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:36,507 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:36,507 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:36,512 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:36,517 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:36,517 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:36,517 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:36,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:36,522 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:36,562 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:36,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:36,567 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:36,604 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:36,610 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae147c4580> has no local changes 2024-04-27 01:01:36,611 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-iviewer Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:36,618 [ scc.git] DEBUG [detached HEAD 8a2b97f] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:36,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:36,619 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:37,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/pulls HTTP/1.1" 200 None 2024-04-27 01:01:37,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3 HTTP/1.1" 200 None 2024-04-27 01:01:37,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3/comments HTTP/1.1" 200 None 2024-04-27 01:01:38,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None 2024-04-27 01:01:38,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:39,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-04-27 01:01:39,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None 2024-04-27 01:01:40,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/statuses/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5?per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:40,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None 2024-04-27 01:01:41,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/status HTTP/1.1" 200 None 2024-04-27 01:01:41,299 [ scc.repo] DEBUG - PR 3 jburel 'fix build failure on rtd' 2024-04-27 01:01:41,299 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:41,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java 2024-04-27 01:01:41,299 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:41,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:41,305 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:41,309 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:41,309 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:41,313 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:41,318 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:41,318 [ scc.git] DEBUG Calling 'git fetch origin pull/3/head' 2024-04-27 01:01:41,679 [ scc.git] DEBUG From https://github.com/ome/omero-guide-java 2024-04-27 01:01:41,679 [ scc.git] DEBUG * branch refs/pull/3/head -> FETCH_HEAD 2024-04-27 01:01:41,684 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:41,684 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:41,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:41,690 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...31294bfa7f63d9dbaa984a386e6db9a945cc0fa5' 2024-04-27 01:01:41,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:41,704 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 3 (fix build failure on rtd) 31294bfa7f63d9dbaa984a386e6db9a945cc0fa5' 2024-04-27 01:01:41,726 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-04-27 01:01:41,728 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++---- 2024-04-27 01:01:41,728 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-) 2024-04-27 01:01:41,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:01:41,882 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:41,922 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:41,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:41,928 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:41,967 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:41,974 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae1500cee0> has no local changes 2024-04-27 01:01:41,974 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-java Already up to date. Merged PRs: - PR 3 jburel 'fix build failure on rtd' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:41,983 [ scc.git] DEBUG [detached HEAD b22a420] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:41,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:41,984 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:42,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab/pulls HTTP/1.1" 200 2 2024-04-27 01:01:42,328 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:42,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab 2024-04-27 01:01:42,328 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:42,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:42,335 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:42,340 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:42,341 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:42,347 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:42,353 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:42,353 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:42,353 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:42,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:42,359 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:42,405 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:42,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:42,413 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:42,460 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:42,466 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae147bcdc0> has no local changes 2024-04-27 01:01:42,467 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-matlab Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:42,475 [ scc.git] DEBUG [detached HEAD 37c9375] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:42,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:42,476 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:42,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/pulls HTTP/1.1" 200 None 2024-04-27 01:01:43,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4 HTTP/1.1" 200 None 2024-04-27 01:01:43,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4/comments HTTP/1.1" 200 None 2024-04-27 01:01:44,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None 2024-04-27 01:01:44,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:45,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None 2024-04-27 01:01:45,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/statuses/4b6e2511fe820a323b2311e2b39910b6b79fcf6a?per_page=1 HTTP/1.1" 200 2 2024-04-27 01:01:45,739 [ scc.repo] DEBUG - PR 4 pwalczysko 'Remove relative reference when it does not work' 2024-04-27 01:01:45,739 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:45,739 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde 2024-04-27 01:01:45,739 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:45,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:45,747 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:45,753 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:45,753 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:45,759 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:45,764 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:45,764 [ scc.git] DEBUG Calling 'git fetch origin pull/4/head' 2024-04-27 01:01:46,172 [ scc.git] DEBUG From https://github.com/ome/omero-guide-mde 2024-04-27 01:01:46,173 [ scc.git] DEBUG * branch refs/pull/4/head -> FETCH_HEAD 2024-04-27 01:01:46,178 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:46,178 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:46,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:46,183 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b6e2511fe820a323b2311e2b39910b6b79fcf6a' 2024-04-27 01:01:46,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:46,194 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 4 (Remove relative reference when it does not work) 4b6e2511fe820a323b2311e2b39910b6b79fcf6a' 2024-04-27 01:01:46,203 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-04-27 01:01:46,205 [ scc.git] DEBUG docs/mde_customizeObjects.rst | 4 ++-- 2024-04-27 01:01:46,205 [ scc.git] DEBUG docs/mde_customizeView.rst | 4 ++-- 2024-04-27 01:01:46,205 [ scc.git] DEBUG 2 files changed, 4 insertions(+), 4 deletions(-) 2024-04-27 01:01:46,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:01:46,371 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:46,409 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:46,409 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:46,414 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:46,450 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:46,456 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae147415e0> has no local changes 2024-04-27 01:01:46,456 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-mde Already up to date. Merged PRs: - PR 4 pwalczysko 'Remove relative reference when it does not work' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:46,463 [ scc.git] DEBUG [detached HEAD e8e5d2b] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:46,464 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:46,464 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:46,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit/pulls HTTP/1.1" 200 2 2024-04-27 01:01:46,805 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:46,805 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit 2024-04-27 01:01:46,806 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:46,806 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:46,819 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:46,824 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:46,825 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:46,830 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:46,835 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:46,836 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:46,836 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:46,836 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:46,841 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:46,884 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:46,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:46,891 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:46,929 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:46,936 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae147bcee0> has no local changes 2024-04-27 01:01:46,936 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-orbit Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:46,945 [ scc.git] DEBUG [detached HEAD 8aef882] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:46,946 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:46,946 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:47,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls HTTP/1.1" 200 2 2024-04-27 01:01:47,227 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:47,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade 2024-04-27 01:01:47,227 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:47,227 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:47,233 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:47,238 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:47,238 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:47,243 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:47,250 [ scc.git] DEBUG Updating 0875cf1..908b335 2024-04-27 01:01:47,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls/1 HTTP/1.1" 200 None 2024-04-27 01:01:47,919 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:47,919 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:47,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:47,924 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:47,968 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:47,968 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:47,974 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:48,017 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:48,023 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae147534f0> has no local changes 2024-04-27 01:01:48,023 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-parade Updating 0875cf1..908b335 Previously merged: - PR 1 jburel 'fix build failure on rtd' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:48,032 [ scc.git] DEBUG [detached HEAD 0a99cc3] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:48,032 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:48,032 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:48,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/pulls HTTP/1.1" 200 None 2024-04-27 01:01:48,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/issues/29 HTTP/1.1" 200 None 2024-04-27 01:01:49,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/issues/29/comments HTTP/1.1" 200 None 2024-04-27 01:01:49,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/e94d52ce847acbda800a56305d78de4ef44a347b HTTP/1.1" 200 None 2024-04-27 01:01:50,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/e94d52ce847acbda800a56305d78de4ef44a347b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:50,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/e94d52ce847acbda800a56305d78de4ef44a347b HTTP/1.1" 200 None 2024-04-27 01:01:51,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/statuses/e94d52ce847acbda800a56305d78de4ef44a347b?per_page=1 HTTP/1.1" 200 2 2024-04-27 01:01:51,209 [ scc.repo] DEBUG - PR 29 jburel 'Action repo2docker' 2024-04-27 01:01:51,209 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:51,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python 2024-04-27 01:01:51,209 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:51,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:51,215 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:51,220 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:51,220 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:51,225 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:51,230 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:51,230 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2024-04-27 01:01:52,023 [ scc.git] DEBUG From https://github.com/ome/omero-guide-python 2024-04-27 01:01:52,023 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2024-04-27 01:01:52,030 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:52,030 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:52,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:52,036 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e94d52ce847acbda800a56305d78de4ef44a347b' 2024-04-27 01:01:52,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:52,050 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Action repo2docker) e94d52ce847acbda800a56305d78de4ef44a347b' 2024-04-27 01:01:52,063 [ scc.git] DEBUG Auto-merging .github/workflows/repo2docker.yml 2024-04-27 01:01:52,063 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/repo2docker.yml 2024-04-27 01:01:52,063 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-04-27 01:01:52,063 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-04-27 01:01:52,071 [ scc.git] DEBUG Calling 'git reset --hard e046b1f99b06b5a029b7b02dd71753d7a4ab262e' 2024-04-27 01:01:52,082 [ scc.git] DEBUG HEAD is now at e046b1f Merge pull request #57 from jburel/windows 2024-04-27 01:01:52,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:01:52,252 [ scc.git] DEBUG Calling 'git merge-base e046b1f99b06b5a029b7b02dd71753d7a4ab262e e94d52ce847acbda800a56305d78de4ef44a347b' 2024-04-27 01:01:52,261 [ scc.git] DEBUG Calling 'git diff --name-only acf12b265fc9ff0974adf69d3a2c636ffc076d31..e046b1f99b06b5a029b7b02dd71753d7a4ab262e' 2024-04-27 01:01:52,275 [ scc.git] INFO - PR 29 jburel 'Action repo2docker' Conflicting PR. Removed from build [OMERO-guides-push#42](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/consoleText) for more details. Possible conflicts: - Upstream changes - .github/workflows/repo2docker.yml --conflicts 2024-04-27 01:01:52,281 [ scc.config] DEBUG Found github.token 2024-04-27 01:01:52,281 [ scc.git] DEBUG Not adding comment to issue #29, already --conflicts. 2024-04-27 01:01:52,281 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:52,329 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:52,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:52,335 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:52,375 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:52,381 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae14712af0> has no local changes 2024-04-27 01:01:52,381 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-python Already up to date. Conflicting PRs (not included): - PR 29 jburel 'Action repo2docker' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:52,389 [ scc.git] DEBUG [detached HEAD 26c53ce] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:52,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:52,390 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:52,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath/pulls HTTP/1.1" 200 2 2024-04-27 01:01:52,683 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:52,684 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath 2024-04-27 01:01:52,684 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:52,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:52,691 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:52,696 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:52,697 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:52,704 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:52,710 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:52,710 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:52,710 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:52,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:52,716 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:52,763 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:52,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:52,771 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:52,814 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:52,822 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae1476a640> has no local changes 2024-04-27 01:01:52,823 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-qupath Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:52,833 [ scc.git] DEBUG [detached HEAD 49f20df] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:52,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:52,833 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:53,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/pulls HTTP/1.1" 200 None 2024-04-27 01:01:53,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11 HTTP/1.1" 200 None 2024-04-27 01:01:54,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11/comments HTTP/1.1" 200 None 2024-04-27 01:01:54,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None 2024-04-27 01:01:55,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:55,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-04-27 01:01:56,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None 2024-04-27 01:01:56,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/statuses/990828ddac8bc276820c2fa5952182f56b0ab241?per_page=1 HTTP/1.1" 200 None 2024-04-27 01:01:56,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None 2024-04-27 01:01:57,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/status HTTP/1.1" 200 None 2024-04-27 01:01:57,413 [ scc.repo] DEBUG - PR 11 jburel 'fix build failure on rtd' 2024-04-27 01:01:57,413 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:57,413 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r 2024-04-27 01:01:57,414 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:57,414 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:57,487 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:57,493 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:57,493 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:57,499 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:57,505 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:57,506 [ scc.git] DEBUG Calling 'git fetch origin pull/11/head' 2024-04-27 01:01:57,901 [ scc.git] DEBUG From https://github.com/ome/omero-guide-r 2024-04-27 01:01:57,901 [ scc.git] DEBUG * branch refs/pull/11/head -> FETCH_HEAD 2024-04-27 01:01:57,907 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:57,907 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:57,908 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:57,913 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...990828ddac8bc276820c2fa5952182f56b0ab241' 2024-04-27 01:01:57,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:57,925 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 11 (fix build failure on rtd) 990828ddac8bc276820c2fa5952182f56b0ab241' 2024-04-27 01:01:57,935 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-04-27 01:01:57,938 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++---- 2024-04-27 01:01:57,938 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-) 2024-04-27 01:01:58,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:01:58,085 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:58,136 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:58,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:58,144 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:58,194 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:58,200 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae146bd4c0> has no local changes 2024-04-27 01:01:58,201 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-r Already up to date. Merged PRs: - PR 11 jburel 'fix build failure on rtd' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:58,209 [ scc.git] DEBUG [detached HEAD 53521c4] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:58,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:58,210 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:58,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls HTTP/1.1" 200 2 2024-04-27 01:01:58,525 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:58,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts 2024-04-27 01:01:58,525 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:58,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:58,533 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:58,537 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:58,538 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:58,543 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:58,552 [ scc.git] DEBUG Updating f5038ce..bb21e02 2024-04-27 01:01:59,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls/2 HTTP/1.1" 200 None 2024-04-27 01:01:59,172 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:59,172 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:59,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:59,178 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:59,218 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:59,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:59,224 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:59,264 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:59,270 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae1470cf70> has no local changes 2024-04-27 01:01:59,271 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-scripts Updating f5038ce..bb21e02 Previously merged: - PR 2 jburel 'fix build failure on rtd' Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:59,280 [ scc.git] DEBUG [detached HEAD 0590b9e] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:59,280 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:59,281 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:01:59,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate/pulls HTTP/1.1" 200 2 2024-04-27 01:01:59,592 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:01:59,592 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate 2024-04-27 01:01:59,592 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:59,592 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:59,598 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:01:59,603 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:01:59,603 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:01:59,610 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:01:59,617 [ scc.git] DEBUG Already up to date. 2024-04-27 01:01:59,617 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:01:59,617 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:59,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:59,622 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:01:59,661 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:01:59,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:01:59,666 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:01:59,711 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:01:59,718 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae146fa430> has no local changes 2024-04-27 01:01:59,719 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-trackmate Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:01:59,729 [ scc.git] DEBUG [detached HEAD 45f8403] merge master -Dorg -Ssuccess-only 2024-04-27 01:01:59,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:01:59,731 [ scc.repo] DEBUG ## PRs found: 2024-04-27 01:02:00,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload/pulls HTTP/1.1" 200 2 2024-04-27 01:02:00,030 [ scc.repo] DEBUG ## Branches found: 2024-04-27 01:02:00,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload 2024-04-27 01:02:00,030 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:02:00,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:02:00,036 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-04-27 01:02:00,042 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-04-27 01:02:00,042 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-04-27 01:02:00,049 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-04-27 01:02:00,056 [ scc.git] DEBUG Already up to date. 2024-04-27 01:02:00,057 [ scc.git] DEBUG ## Unique users: [] 2024-04-27 01:02:00,057 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:02:00,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:02:00,062 [ scc.git] DEBUG Calling 'git submodule update' 2024-04-27 01:02:00,104 [ scc.git] DEBUG Get sha1 of %s 2024-04-27 01:02:00,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-04-27 01:02:00,110 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:02:00,152 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:02:00,160 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae146f7e50> has no local changes 2024-04-27 01:02:00,160 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guide-upload Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:02:00,169 [ scc.git] DEBUG [detached HEAD 2362ece] merge master -Dorg -Ssuccess-only 2024-04-27 01:02:00,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:00,170 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-04-27 01:02:00,246 [ scc.config] DEBUG Found submodule.cellprofiler.url 2024-04-27 01:02:00,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:00,454 [ scc.config] DEBUG Found submodule.download.url 2024-04-27 01:02:00,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:00,931 [ scc.config] DEBUG Found submodule.figure.url 2024-04-27 01:02:01,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:01,343 [ scc.config] DEBUG Found submodule.fiji.url 2024-04-27 01:02:01,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:01,759 [ scc.config] DEBUG Found submodule.fpbioimage.url 2024-04-27 01:02:02,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:02,164 [ scc.config] DEBUG Found submodule.ilastik.url 2024-04-27 01:02:02,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:02,564 [ scc.config] DEBUG Found submodule.introduction.url 2024-04-27 01:02:02,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:02,985 [ scc.config] DEBUG Found submodule.iviewer.url 2024-04-27 01:02:03,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:03,397 [ scc.config] DEBUG Found submodule.java.url 2024-04-27 01:02:03,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:03,805 [ scc.config] DEBUG Found submodule.matlab.url 2024-04-27 01:02:04,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:04,218 [ scc.config] DEBUG Found submodule.mde.url 2024-04-27 01:02:04,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:04,618 [ scc.config] DEBUG Found submodule.orbit.url 2024-04-27 01:02:05,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:05,016 [ scc.config] DEBUG Found submodule.parade.url 2024-04-27 01:02:05,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:05,426 [ scc.config] DEBUG Found submodule.python.url 2024-04-27 01:02:05,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:05,835 [ scc.config] DEBUG Found submodule.qupath.url 2024-04-27 01:02:06,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:06,236 [ scc.config] DEBUG Found submodule.r.url 2024-04-27 01:02:06,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:06,650 [ scc.config] DEBUG Found submodule.scripts.url 2024-04-27 01:02:07,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:07,056 [ scc.config] DEBUG Found submodule.trackmate.url 2024-04-27 01:02:07,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:07,472 [ scc.config] DEBUG Found submodule.upload.url 2024-04-27 01:02:07,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-04-27 01:02:07,875 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-04-27 01:02:07,936 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae160bfd90> has local changes 2024-04-27 01:02:07,936 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-guides Excluded PRs: - PR 23 jburel 'Remove submodules' (exclude comment) Already up to date. Repository: ome/omero-guide-cellprofiler Already up to date. Merged PRs: - PR 24 jburel 'Remove binder' Repository: ome/omero-guide-download Updating 4b1b912..a27d196 Previously merged: Repository: ome/omero-guide-figure Already up to date. Merged PRs: - PR 14 will-moore 'Table data by roi' Repository: ome/omero-guide-fiji Excluded PRs: - PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway) Already up to date. Repository: ome/omero-guide-fpbioimage Already up to date. Repository: ome/omero-guide-ilastik Already up to date. Repository: ome/omero-guide-introduction Already up to date. Repository: ome/omero-guide-iviewer Already up to date. Repository: ome/omero-guide-java Already up to date. Merged PRs: - PR 3 jburel 'fix build failure on rtd' Repository: ome/omero-guide-matlab Already up to date. Repository: ome/omero-guide-mde Already up to date. Merged PRs: - PR 4 pwalczysko 'Remove relative reference when it does not work' Repository: ome/omero-guide-orbit Already up to date. Repository: ome/omero-guide-parade Updating 0875cf1..908b335 Previously merged: - PR 1 jburel 'fix build failure on rtd' Repository: ome/omero-guide-python Already up to date. Conflicting PRs (not included): - PR 29 jburel 'Action repo2docker' Repository: ome/omero-guide-qupath Already up to date. Repository: ome/omero-guide-r Already up to date. Merged PRs: - PR 11 jburel 'fix build failure on rtd' Repository: ome/omero-guide-scripts Updating f5038ce..bb21e02 Previously merged: - PR 2 jburel 'fix build failure on rtd' Repository: ome/omero-guide-trackmate Already up to date. Repository: ome/omero-guide-upload Already up to date. Generated by OMERO-guides-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/42/)' 2024-04-27 01:02:07,969 [ scc.git] DEBUG [detached HEAD ac1fb1b] merge master -Dorg -Ssuccess-only 2024-04-27 01:02:07,969 [ scc.merge] INFO Repository: ome/omero-guides 2024-04-27 01:02:07,969 [ scc.git] DEBUG 20 files changed, 38 insertions(+), 38 deletions(-) 2024-04-27 01:02:07,969 [ scc.merge] INFO Excluded PRs: 2024-04-27 01:02:07,969 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment) 2024-04-27 01:02:07,969 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,969 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Repository: ome/omero-guide-cellprofiler 2024-04-27 01:02:07,970 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Merged PRs: 2024-04-27 01:02:07,970 [ scc.merge] INFO - PR 24 jburel 'Remove binder' 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Repository: ome/omero-guide-download 2024-04-27 01:02:07,970 [ scc.merge] INFO Updating 4b1b912..a27d196 2024-04-27 01:02:07,970 [ scc.merge] INFO Previously merged: 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Repository: ome/omero-guide-figure 2024-04-27 01:02:07,970 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Merged PRs: 2024-04-27 01:02:07,970 [ scc.merge] INFO - PR 14 will-moore 'Table data by roi' 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Repository: ome/omero-guide-fiji 2024-04-27 01:02:07,970 [ scc.merge] INFO Excluded PRs: 2024-04-27 01:02:07,970 [ scc.merge] INFO - PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway) 2024-04-27 01:02:07,970 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO 2024-04-27 01:02:07,970 [ scc.merge] INFO Repository: ome/omero-guide-fpbioimage 2024-04-27 01:02:07,970 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO Repository: ome/omero-guide-ilastik 2024-04-27 01:02:07,971 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO Repository: ome/omero-guide-introduction 2024-04-27 01:02:07,971 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO Repository: ome/omero-guide-iviewer 2024-04-27 01:02:07,971 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO Repository: ome/omero-guide-java 2024-04-27 01:02:07,971 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO Merged PRs: 2024-04-27 01:02:07,971 [ scc.merge] INFO - PR 3 jburel 'fix build failure on rtd' 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO Repository: ome/omero-guide-matlab 2024-04-27 01:02:07,971 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,971 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO Repository: ome/omero-guide-mde 2024-04-27 01:02:07,972 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO Merged PRs: 2024-04-27 01:02:07,972 [ scc.merge] INFO - PR 4 pwalczysko 'Remove relative reference when it does not work' 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO Repository: ome/omero-guide-orbit 2024-04-27 01:02:07,972 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO Repository: ome/omero-guide-parade 2024-04-27 01:02:07,972 [ scc.merge] INFO Updating 0875cf1..908b335 2024-04-27 01:02:07,972 [ scc.merge] INFO Previously merged: 2024-04-27 01:02:07,972 [ scc.merge] INFO - PR 1 jburel 'fix build failure on rtd' 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,972 [ scc.merge] INFO Repository: ome/omero-guide-python 2024-04-27 01:02:07,972 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,972 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO Conflicting PRs (not included): 2024-04-27 01:02:07,973 [ scc.merge] INFO - PR 29 jburel 'Action repo2docker' 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO Repository: ome/omero-guide-qupath 2024-04-27 01:02:07,973 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO Repository: ome/omero-guide-r 2024-04-27 01:02:07,973 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO Merged PRs: 2024-04-27 01:02:07,973 [ scc.merge] INFO - PR 11 jburel 'fix build failure on rtd' 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO Repository: ome/omero-guide-scripts 2024-04-27 01:02:07,973 [ scc.merge] INFO Updating f5038ce..bb21e02 2024-04-27 01:02:07,973 [ scc.merge] INFO Previously merged: 2024-04-27 01:02:07,973 [ scc.merge] INFO - PR 2 jburel 'fix build failure on rtd' 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,973 [ scc.merge] INFO 2024-04-27 01:02:07,974 [ scc.merge] INFO Repository: ome/omero-guide-trackmate 2024-04-27 01:02:07,974 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,974 [ scc.merge] INFO 2024-04-27 01:02:07,974 [ scc.merge] INFO 2024-04-27 01:02:07,974 [ scc.merge] INFO Repository: ome/omero-guide-upload 2024-04-27 01:02:07,974 [ scc.merge] INFO Already up to date. 2024-04-27 01:02:07,974 [ scc.merge] INFO 2024-04-27 01:02:07,974 [ scc.merge] INFO 2024-04-27 01:02:07,974 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-04-27 01:02:07,974 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:07,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler 2024-04-27 01:02:07,981 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:07,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:07,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download 2024-04-27 01:02:07,987 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:07,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:07,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure 2024-04-27 01:02:07,992 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:07,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:07,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji 2024-04-27 01:02:07,997 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,005 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,005 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage 2024-04-27 01:02:08,005 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,014 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,014 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik 2024-04-27 01:02:08,014 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction 2024-04-27 01:02:08,019 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer 2024-04-27 01:02:08,024 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java 2024-04-27 01:02:08,029 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab 2024-04-27 01:02:08,034 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,038 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,038 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde 2024-04-27 01:02:08,038 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit 2024-04-27 01:02:08,043 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade 2024-04-27 01:02:08,049 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python 2024-04-27 01:02:08,055 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath 2024-04-27 01:02:08,062 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,070 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r 2024-04-27 01:02:08,070 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,075 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,075 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts 2024-04-27 01:02:08,075 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate 2024-04-27 01:02:08,081 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push 2024-04-27 01:02:08,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload 2024-04-27 01:02:08,087 [ scc.git] DEBUG Calling 'git remote' 2024-04-27 01:02:08,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push Update component versions python3: can't open file '/home/omero/workspace/OMERO-guides-push/cellprofiler/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/cellprofiler/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/download/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/download/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/figure/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/figure/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/fiji/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/fiji/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/fpbioimage/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/fpbioimage/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/ilastik/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/ilastik/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/introduction/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/introduction/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/iviewer/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/iviewer/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/java/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/java/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/matlab/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/matlab/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/mde/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/mde/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/orbit/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/orbit/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/parade/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/parade/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/python/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/python/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/r/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/r/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/scripts/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/scripts/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/trackmate/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/trackmate/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/upload/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-guides-push/upload/setup.py': [Errno 2] No such file or directory grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: 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Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'cellprofiler' Entering 'download' Entering 'figure' Entering 'fiji' Entering 'fpbioimage' Entering 'ilastik' Entering 'introduction' Entering 'iviewer' Entering 'java' Entering 'matlab' Entering 'mde' Entering 'orbit' Entering 'parade' Entering 'python' Entering 'qupath' Entering 'r' Entering 'scripts' Entering 'trackmate' Entering 'upload' Entering 'cellprofiler' HEAD detached from 248e8cb nothing to commit, working tree clean Entering 'download' HEAD detached from 4b1b912 nothing to commit, working tree clean Entering 'figure' HEAD detached from 654d43b nothing to commit, working tree clean Entering 'fiji' HEAD detached from 218b05a nothing to commit, working tree clean Entering 'fpbioimage' HEAD detached from 8f4b103 nothing to commit, working tree clean Entering 'ilastik' HEAD detached from 6789cf7 nothing to commit, working tree clean Entering 'introduction' HEAD detached from d903363 nothing to commit, working tree clean Entering 'iviewer' HEAD detached from 6ed80b3 nothing to commit, working tree clean Entering 'java' HEAD detached from a4b6b55 nothing to commit, working tree clean Entering 'matlab' HEAD detached from ecbd07c nothing to commit, working tree clean Entering 'mde' HEAD detached from d43e17f nothing to commit, working tree clean Entering 'orbit' HEAD detached from 4ef1eaa nothing to commit, working tree clean Entering 'parade' HEAD detached from 0875cf1 nothing to commit, working tree clean Entering 'python' HEAD detached from e046b1f nothing to commit, working tree clean Entering 'qupath' HEAD detached from 6db8b1c nothing to commit, working tree clean Entering 'r' HEAD detached from a770a10 nothing to commit, working tree clean Entering 'scripts' HEAD detached from f5038ce nothing to commit, working tree clean Entering 'trackmate' HEAD detached from ffe98a8 nothing to commit, working tree clean Entering 'upload' HEAD detached from 72df341 nothing to commit, working tree clean HEAD detached from 06eaa16 nothing to commit, working tree clean 2024-04-27 01:03:35,879 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-guides/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS