Console Output
+ export BASE_REPO=omero-guides.git
+ BASE_REPO=omero-guides.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2025-12-20 00:51:41,889 [ scc.config] DEBUG Found github.token
2025-12-20 00:51:41,891 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-12-20 00:51:42,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:51:42,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:51:42,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-12-20 00:51:42,857 [ scc.gh] DEBUG 4991 remaining from 5000 (Reset at 01:12
2025-12-20 00:51:42,858 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:51:42,860 [ scc.git] DEBUG Check current status
2025-12-20 00:51:42,860 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:51:42,862 [ scc.git] DEBUG e856977 Merge pull request #302 from ome/dependabot/submodules/upload-6a5e015
2025-12-20 00:51:42,863 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:51:42,904 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2025-12-20 00:51:42,913 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2025-12-20 00:51:42,916 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2025-12-20 00:51:42,919 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2025-12-20 00:51:42,928 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2025-12-20 00:51:42,931 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2025-12-20 00:51:42,940 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2025-12-20 00:51:42,948 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2025-12-20 00:51:42,951 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2025-12-20 00:51:42,954 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2025-12-20 00:51:42,963 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2025-12-20 00:51:42,972 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2025-12-20 00:51:42,981 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2025-12-20 00:51:42,985 [ scc.git] DEBUG 5ba303a4f2ace9cd09645ad1915368f1ea2b283f python (v0.3.0-96-g5ba303a)
2025-12-20 00:51:42,994 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2025-12-20 00:51:42,997 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2025-12-20 00:51:43,006 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2025-12-20 00:51:43,015 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2025-12-20 00:51:43,018 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2025-12-20 00:51:43,020 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:51:43,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2025-12-20 00:51:43,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:51:44,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:51:44,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:51:45,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:51:45,125 [ scc.git] DEBUG Resetting...
2025-12-20 00:51:45,125 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-12-20 00:51:45,132 [ scc.git] DEBUG HEAD is now at e856977 Merge pull request #302 from ome/dependabot/submodules/upload-6a5e015
2025-12-20 00:51:45,132 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2025-12-20 00:51:45,222 [ scc.git] DEBUG Check current status
2025-12-20 00:51:45,222 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:51:45,225 [ scc.git] DEBUG e856977 Merge pull request #302 from ome/dependabot/submodules/upload-6a5e015
2025-12-20 00:51:45,225 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:51:45,264 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2025-12-20 00:51:45,274 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2025-12-20 00:51:45,277 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2025-12-20 00:51:45,280 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2025-12-20 00:51:45,288 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2025-12-20 00:51:45,291 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2025-12-20 00:51:45,300 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2025-12-20 00:51:45,308 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2025-12-20 00:51:45,311 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2025-12-20 00:51:45,313 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2025-12-20 00:51:45,323 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2025-12-20 00:51:45,331 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2025-12-20 00:51:45,339 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2025-12-20 00:51:45,342 [ scc.git] DEBUG 5ba303a4f2ace9cd09645ad1915368f1ea2b283f python (v0.3.0-96-g5ba303a)
2025-12-20 00:51:45,351 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2025-12-20 00:51:45,353 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2025-12-20 00:51:45,362 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2025-12-20 00:51:45,370 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2025-12-20 00:51:45,373 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2025-12-20 00:51:45,374 [ scc.merge] INFO Merging Pull Request(s) based on master
2025-12-20 00:51:45,374 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2025-12-20 00:51:45,374 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2025-12-20 00:51:45,374 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2025-12-20 00:51:45,374 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2025-12-20 00:51:45,374 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:51:45,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2025-12-20 00:51:46,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/301 HTTP/1.1" 200 None
2025-12-20 00:51:46,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/301/comments HTTP/1.1" 200 None
2025-12-20 00:51:46,720 [ scc.repo] DEBUG - PR 301 pwalczysko 'Add I3D bio guide to omero-guides'
2025-12-20 00:51:46,720 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:51:46,720 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:51:46,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:51:46,722 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:51:46,724 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:51:46,724 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:51:46,727 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:51:46,730 [ scc.git] DEBUG Already up to date.
2025-12-20 00:51:46,730 [ scc.git] DEBUG Calling 'git fetch origin pull/301/head'
2025-12-20 00:51:47,002 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2025-12-20 00:51:47,002 [ scc.git] DEBUG * branch refs/pull/301/head -> FETCH_HEAD
2025-12-20 00:51:47,007 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:51:47,007 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:51:47,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:51:47,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dbdffed21f0766def0007c9ae219d502b2716f84'
2025-12-20 00:51:47,012 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:51:47,014 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 301 (Add I3D bio guide to omero-guides) dbdffed21f0766def0007c9ae219d502b2716f84'
2025-12-20 00:51:47,029 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:51:47,031 [ scc.git] DEBUG index.rst | 2 ++
2025-12-20 00:51:47,031 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2025-12-20 00:51:47,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:51:47,174 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:51:47,221 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:51:47,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:51:47,224 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:51:47,285 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f588954dd50> has no local changes
2025-12-20 00:51:47,285 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Merged PRs:
- PR 301 pwalczysko 'Add I3D bio guide to omero-guides'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:51:47,344 [ scc.git] DEBUG [detached HEAD 4f4bfe7] merge master -Dorg -Snone
2025-12-20 00:51:47,344 [ scc.merge] INFO Repository: ome/omero-guides
2025-12-20 00:51:47,344 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:51:47,344 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2025-12-20 00:51:47,344 [ scc.merge] INFO Already up to date.
2025-12-20 00:51:47,344 [ scc.merge] INFO
2025-12-20 00:51:47,344 [ scc.merge] INFO Merged PRs:
2025-12-20 00:51:47,344 [ scc.merge] INFO - PR 301 pwalczysko 'Add I3D bio guide to omero-guides'
2025-12-20 00:51:47,344 [ scc.merge] INFO
2025-12-20 00:51:47,345 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-20 00:51:47,345 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'cellprofiler'
Synchronizing submodule url for 'download'
Synchronizing submodule url for 'figure'
Synchronizing submodule url for 'fiji'
Synchronizing submodule url for 'fpbioimage'
Synchronizing submodule url for 'ilastik'
Synchronizing submodule url for 'introduction'
Synchronizing submodule url for 'iviewer'
Synchronizing submodule url for 'java'
Synchronizing submodule url for 'matlab'
Synchronizing submodule url for 'mde'
Synchronizing submodule url for 'orbit'
Synchronizing submodule url for 'parade'
Synchronizing submodule url for 'python'
Synchronizing submodule url for 'qupath'
Synchronizing submodule url for 'r'
Synchronizing submodule url for 'scripts'
Synchronizing submodule url for 'trackmate'
Synchronizing submodule url for 'upload'
Submodule path 'download': checked out 'a27d196bee4a96b586246dc5d94ef07db7c5c0f8'
Submodule path 'parade': checked out '908b3356722bb23aafe103d87f8675f80fbaa5ed'
Merge all submodules2025-12-20 00:51:53,099 [ scc.config] DEBUG Found github.token
2025-12-20 00:51:53,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-12-20 00:51:53,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:51:53,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:51:54,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-12-20 00:51:54,112 [ scc.gh] DEBUG 4956 remaining from 5000 (Reset at 01:12
2025-12-20 00:51:54,112 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:51:54,114 [ scc.git] DEBUG Check current status
2025-12-20 00:51:54,115 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:51:54,117 [ scc.git] DEBUG 4f4bfe7 merge master -Dorg -Snone
2025-12-20 00:51:54,117 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:51:54,157 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2025-12-20 00:51:54,166 [ scc.git] DEBUG +a27d196bee4a96b586246dc5d94ef07db7c5c0f8 download (heads/master)
2025-12-20 00:51:54,169 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2025-12-20 00:51:54,172 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2025-12-20 00:51:54,181 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2025-12-20 00:51:54,183 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2025-12-20 00:51:54,192 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2025-12-20 00:51:54,201 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2025-12-20 00:51:54,204 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2025-12-20 00:51:54,207 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2025-12-20 00:51:54,215 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2025-12-20 00:51:54,224 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2025-12-20 00:51:54,233 [ scc.git] DEBUG +908b3356722bb23aafe103d87f8675f80fbaa5ed parade (heads/master)
2025-12-20 00:51:54,236 [ scc.git] DEBUG 5ba303a4f2ace9cd09645ad1915368f1ea2b283f python (v0.3.0-96-g5ba303a)
2025-12-20 00:51:54,244 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2025-12-20 00:51:54,247 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2025-12-20 00:51:54,256 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2025-12-20 00:51:54,264 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2025-12-20 00:51:54,267 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2025-12-20 00:51:54,270 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:51:54,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2025-12-20 00:51:55,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:51:55,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:51:55,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:51:56,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:51:56,369 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:51:56,437 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2025-12-20 00:51:56,437 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:51:56,439 [ scc.git] DEBUG Check current status
2025-12-20 00:51:56,439 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:51:56,441 [ scc.git] DEBUG 248e8cb Merge pull request #23 from jburel/rtd_build
2025-12-20 00:51:56,441 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:51:56,481 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:51:56,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler HTTP/1.1" 200 None
2025-12-20 00:51:57,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:51:57,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:51:58,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:51:58,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:51:58,674 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:51:58,712 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:51:58,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2025-12-20 00:51:58,713 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:51:58,715 [ scc.git] DEBUG Check current status
2025-12-20 00:51:58,715 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:51:58,717 [ scc.git] DEBUG a27d196 Fix build failure on rtd
2025-12-20 00:51:58,718 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:51:58,756 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:51:59,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download HTTP/1.1" 200 None
2025-12-20 00:51:59,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:00,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:00,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:01,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:01,034 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:01,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:01,072 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2025-12-20 00:52:01,072 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:01,074 [ scc.git] DEBUG Check current status
2025-12-20 00:52:01,074 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:01,076 [ scc.git] DEBUG 654d43b Merge pull request #16 from jburel/rtd_build
2025-12-20 00:52:01,076 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:01,115 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:01,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure HTTP/1.1" 200 None
2025-12-20 00:52:02,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:02,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:03,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:03,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:03,409 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:03,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:03,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2025-12-20 00:52:03,448 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:03,450 [ scc.git] DEBUG Check current status
2025-12-20 00:52:03,450 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:03,452 [ scc.git] DEBUG 218b05a Merge pull request #32 from jburel/link
2025-12-20 00:52:03,453 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:03,492 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:03,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji HTTP/1.1" 200 None
2025-12-20 00:52:04,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:04,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:05,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:05,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:05,663 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:05,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:05,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2025-12-20 00:52:05,701 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:05,703 [ scc.git] DEBUG Check current status
2025-12-20 00:52:05,703 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:05,705 [ scc.git] DEBUG 8f4b103 remove sphinx job following migration to rtd
2025-12-20 00:52:05,705 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:05,744 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:06,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage HTTP/1.1" 200 None
2025-12-20 00:52:06,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:07,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:07,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:08,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:08,047 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:08,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:08,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2025-12-20 00:52:08,086 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:08,088 [ scc.git] DEBUG Check current status
2025-12-20 00:52:08,088 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:08,091 [ scc.git] DEBUG f7b4afb Remove duplicate
2025-12-20 00:52:08,091 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:08,129 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:08,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik HTTP/1.1" 200 None
2025-12-20 00:52:09,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:09,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:09,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:10,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:10,349 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:10,387 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:10,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2025-12-20 00:52:10,388 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:10,390 [ scc.git] DEBUG Check current status
2025-12-20 00:52:10,390 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:10,392 [ scc.git] DEBUG d903363 Merge pull request #26 from jburel/rtd_build
2025-12-20 00:52:10,392 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:10,431 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:10,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction HTTP/1.1" 200 None
2025-12-20 00:52:11,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:11,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:12,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:12,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:12,753 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:12,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:12,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2025-12-20 00:52:12,791 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:12,793 [ scc.git] DEBUG Check current status
2025-12-20 00:52:12,793 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:12,795 [ scc.git] DEBUG 6ed80b3 Merge pull request #13 from jburel/rtd_build
2025-12-20 00:52:12,795 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:12,834 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:13,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer HTTP/1.1" 200 None
2025-12-20 00:52:13,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:14,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:14,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:15,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:15,068 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:15,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:15,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2025-12-20 00:52:15,108 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:15,110 [ scc.git] DEBUG Check current status
2025-12-20 00:52:15,110 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:15,112 [ scc.git] DEBUG a4b6b55 Remove badge for sphinx
2025-12-20 00:52:15,112 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:15,153 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:15,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java HTTP/1.1" 200 None
2025-12-20 00:52:16,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:16,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:16,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:17,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:17,388 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:17,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:17,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2025-12-20 00:52:17,428 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:17,431 [ scc.git] DEBUG Check current status
2025-12-20 00:52:17,431 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:17,433 [ scc.git] DEBUG ecbd07c Merge pull request #5 from pwalczysko/matlab-online
2025-12-20 00:52:17,433 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:17,472 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:18,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab HTTP/1.1" 200 None
2025-12-20 00:52:18,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:18,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:19,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:19,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:19,827 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:19,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:19,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2025-12-20 00:52:19,866 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:19,868 [ scc.git] DEBUG Check current status
2025-12-20 00:52:19,868 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:19,871 [ scc.git] DEBUG d43e17f Merge pull request #5 from jburel/rtd_build
2025-12-20 00:52:19,871 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:19,910 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:20,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde HTTP/1.1" 200 None
2025-12-20 00:52:20,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:21,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:21,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:22,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:22,037 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:22,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:22,077 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2025-12-20 00:52:22,077 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:22,079 [ scc.git] DEBUG Check current status
2025-12-20 00:52:22,079 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:22,081 [ scc.git] DEBUG 4ef1eaa Update actions to v3 and v4
2025-12-20 00:52:22,082 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:22,121 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:22,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit HTTP/1.1" 200 None
2025-12-20 00:52:23,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:23,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:23,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:24,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:24,283 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:24,322 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:24,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2025-12-20 00:52:24,323 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:24,325 [ scc.git] DEBUG Check current status
2025-12-20 00:52:24,325 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:24,327 [ scc.git] DEBUG 908b335 Merge pull request #1 from ome/rtd_build
2025-12-20 00:52:24,327 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:24,367 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:24,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade HTTP/1.1" 200 None
2025-12-20 00:52:25,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:25,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:26,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:26,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:26,812 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:26,852 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:26,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2025-12-20 00:52:26,853 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:26,855 [ scc.git] DEBUG Check current status
2025-12-20 00:52:26,855 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:26,857 [ scc.git] DEBUG 5ba303a Simplfiy notebook
2025-12-20 00:52:26,857 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:26,898 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:27,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python HTTP/1.1" 200 None
2025-12-20 00:52:27,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:28,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:28,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:29,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:29,132 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:29,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:29,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2025-12-20 00:52:29,171 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:29,174 [ scc.git] DEBUG Check current status
2025-12-20 00:52:29,174 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:29,176 [ scc.git] DEBUG 6db8b1c Merge pull request #11 from jburel/installation
2025-12-20 00:52:29,176 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:29,216 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:29,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath HTTP/1.1" 200 None
2025-12-20 00:52:30,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:30,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:30,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:31,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:31,370 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:31,409 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:31,410 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2025-12-20 00:52:31,410 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:31,412 [ scc.git] DEBUG Check current status
2025-12-20 00:52:31,412 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:31,414 [ scc.git] DEBUG a770a10 Remove sphinx badge
2025-12-20 00:52:31,414 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:31,454 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:31,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r HTTP/1.1" 200 None
2025-12-20 00:52:32,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:32,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:33,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:33,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:33,642 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:33,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:33,683 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2025-12-20 00:52:33,683 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:33,685 [ scc.git] DEBUG Check current status
2025-12-20 00:52:33,685 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:33,687 [ scc.git] DEBUG 6133d50 Merge pull request #4 from Rdornier/import-from-csv-fix
2025-12-20 00:52:33,687 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:33,727 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:34,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts HTTP/1.1" 200 None
2025-12-20 00:52:34,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:35,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:35,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:35,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:35,927 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:35,966 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:35,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2025-12-20 00:52:35,967 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:35,969 [ scc.git] DEBUG Check current status
2025-12-20 00:52:35,969 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:35,971 [ scc.git] DEBUG ffe98a8 Merge pull request #5 from jburel/rtd_build
2025-12-20 00:52:35,972 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:36,011 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:36,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate HTTP/1.1" 200 None
2025-12-20 00:52:37,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:37,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:37,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:38,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:38,387 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:38,427 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:38,427 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2025-12-20 00:52:38,427 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-12-20 00:52:38,429 [ scc.git] DEBUG Check current status
2025-12-20 00:52:38,429 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:38,432 [ scc.git] DEBUG 6a5e015 Merge pull request #19 from pwalczysko/update-insight-download
2025-12-20 00:52:38,432 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:38,472 [ scc.config] DEBUG Found remote.origin.url
2025-12-20 00:52:38,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload HTTP/1.1" 200 None
2025-12-20 00:52:39,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-12-20 00:52:39,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-12-20 00:52:40,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-12-20 00:52:40,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-12-20 00:52:40,604 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:40,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:40,644 [ scc.git] DEBUG Resetting...
2025-12-20 00:52:40,644 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-12-20 00:52:40,651 [ scc.git] DEBUG HEAD is now at 4f4bfe7 merge master -Dorg -Snone
2025-12-20 00:52:40,651 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2025-12-20 00:52:40,699 [ scc.git] DEBUG Submodule path 'download': checked out '4b1b912438f7415faf2d1f618d596968121bcfe8'
2025-12-20 00:52:40,738 [ scc.git] DEBUG Submodule path 'parade': checked out '0875cf1cbb43411bfd5849763da8fe7d2bdafdc0'
2025-12-20 00:52:40,757 [ scc.git] DEBUG Check current status
2025-12-20 00:52:40,757 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-12-20 00:52:40,759 [ scc.git] DEBUG 4f4bfe7 merge master -Dorg -Snone
2025-12-20 00:52:40,760 [ scc.git] DEBUG Calling 'git submodule status'
2025-12-20 00:52:40,797 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2025-12-20 00:52:40,806 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2025-12-20 00:52:40,808 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2025-12-20 00:52:40,811 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2025-12-20 00:52:40,820 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2025-12-20 00:52:40,822 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2025-12-20 00:52:40,830 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2025-12-20 00:52:40,839 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2025-12-20 00:52:40,841 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2025-12-20 00:52:40,844 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2025-12-20 00:52:40,852 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2025-12-20 00:52:40,861 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2025-12-20 00:52:40,869 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2025-12-20 00:52:40,872 [ scc.git] DEBUG 5ba303a4f2ace9cd09645ad1915368f1ea2b283f python (v0.3.0-96-g5ba303a)
2025-12-20 00:52:40,880 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2025-12-20 00:52:40,883 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2025-12-20 00:52:40,891 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2025-12-20 00:52:40,900 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2025-12-20 00:52:40,903 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2025-12-20 00:52:40,903 [ scc.merge] INFO Merging Pull Request(s) based on master
2025-12-20 00:52:40,903 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2025-12-20 00:52:40,903 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2025-12-20 00:52:40,904 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2025-12-20 00:52:40,904 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2025-12-20 00:52:40,904 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2025-12-20 00:52:40,904 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:52:41,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2025-12-20 00:52:41,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/301 HTTP/1.1" 200 None
2025-12-20 00:52:42,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/301/comments HTTP/1.1" 200 None
2025-12-20 00:52:42,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/dbdffed21f0766def0007c9ae219d502b2716f84 HTTP/1.1" 200 None
2025-12-20 00:52:43,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/dbdffed21f0766def0007c9ae219d502b2716f84/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:52:43,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/dbdffed21f0766def0007c9ae219d502b2716f84 HTTP/1.1" 200 None
2025-12-20 00:52:44,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/statuses/dbdffed21f0766def0007c9ae219d502b2716f84?per_page=1 HTTP/1.1" 200 None
2025-12-20 00:52:44,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/dbdffed21f0766def0007c9ae219d502b2716f84 HTTP/1.1" 200 None
2025-12-20 00:52:44,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/dbdffed21f0766def0007c9ae219d502b2716f84/status HTTP/1.1" 200 None
2025-12-20 00:52:44,895 [ scc.repo] DEBUG - PR 301 pwalczysko 'Add I3D bio guide to omero-guides'
2025-12-20 00:52:44,895 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:52:44,895 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:44,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:44,898 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:52:44,900 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:52:44,900 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:52:44,903 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:52:44,906 [ scc.git] DEBUG Already up to date.
2025-12-20 00:52:44,906 [ scc.git] DEBUG Calling 'git fetch origin pull/301/head'
2025-12-20 00:52:45,198 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2025-12-20 00:52:45,198 [ scc.git] DEBUG * branch refs/pull/301/head -> FETCH_HEAD
2025-12-20 00:52:45,202 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:52:45,202 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:45,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:45,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dbdffed21f0766def0007c9ae219d502b2716f84'
2025-12-20 00:52:45,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:45,209 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 301 (Add I3D bio guide to omero-guides) dbdffed21f0766def0007c9ae219d502b2716f84'
2025-12-20 00:52:45,212 [ scc.git] DEBUG Already up to date.
2025-12-20 00:52:45,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:52:45,348 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:52:45,395 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:45,395 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:45,397 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:52:45,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/pulls HTTP/1.1" 200 None
2025-12-20 00:52:46,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24 HTTP/1.1" 200 None
2025-12-20 00:52:46,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24/comments HTTP/1.1" 200 None
2025-12-20 00:52:47,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2025-12-20 00:52:47,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:52:48,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2025-12-20 00:52:48,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/statuses/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:52:48,761 [ scc.repo] DEBUG - PR 24 jburel 'Remove binder'
2025-12-20 00:52:48,761 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:52:48,761 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2025-12-20 00:52:48,761 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:48,761 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:48,764 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:52:48,766 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:52:48,766 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:52:48,769 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:52:48,772 [ scc.git] DEBUG Already up to date.
2025-12-20 00:52:48,772 [ scc.git] DEBUG Calling 'git fetch origin pull/24/head'
2025-12-20 00:52:49,053 [ scc.git] DEBUG From https://github.com/ome/omero-guide-cellprofiler
2025-12-20 00:52:49,053 [ scc.git] DEBUG * branch refs/pull/24/head -> FETCH_HEAD
2025-12-20 00:52:49,057 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:52:49,057 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:49,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:49,060 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2025-12-20 00:52:49,063 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:49,065 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 24 (Remove binder) 647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2025-12-20 00:52:49,072 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:52:49,075 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 -------------------------
2025-12-20 00:52:49,075 [ scc.git] DEBUG .github/workflows/build.yml | 27 +++++++++++++++++++++++++++
2025-12-20 00:52:49,075 [ scc.git] DEBUG README.md | 15 ++++++---------
2025-12-20 00:52:49,075 [ scc.git] DEBUG binder/environment.yml | 6 ++++--
2025-12-20 00:52:49,075 [ scc.git] DEBUG 4 files changed, 37 insertions(+), 36 deletions(-)
2025-12-20 00:52:49,075 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml
2025-12-20 00:52:49,075 [ scc.git] DEBUG create mode 100644 .github/workflows/build.yml
2025-12-20 00:52:49,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:52:49,213 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:52:49,250 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:49,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:49,252 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:49,288 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:52:49,291 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849c1b9d0> has no local changes
2025-12-20 00:52:49,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-cellprofiler
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:52:49,298 [ scc.git] DEBUG [detached HEAD aee475d] merge master -Dorg -Ssuccess-only
2025-12-20 00:52:49,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:49,299 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:52:49,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download/pulls HTTP/1.1" 200 2
2025-12-20 00:52:49,642 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:52:49,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2025-12-20 00:52:49,642 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:49,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:49,644 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:52:49,647 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:52:49,647 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:52:49,650 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:52:49,656 [ scc.git] DEBUG Updating 4b1b912..a27d196
2025-12-20 00:52:49,657 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:52:49,657 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:49,657 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:49,659 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:52:49,697 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:49,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:49,699 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:49,736 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:52:49,739 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa84a15e690> has no local changes
2025-12-20 00:52:49,739 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:52:49,745 [ scc.git] DEBUG [detached HEAD f28b264] merge master -Dorg -Ssuccess-only
2025-12-20 00:52:49,745 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:49,746 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:52:50,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/pulls HTTP/1.1" 200 None
2025-12-20 00:52:50,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/17 HTTP/1.1" 200 None
2025-12-20 00:52:51,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404 HTTP/1.1" 200 None
2025-12-20 00:52:51,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:52:52,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404 HTTP/1.1" 200 None
2025-12-20 00:52:52,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/statuses/d142504a021b0e7f274520f08eb24796f0663404?per_page=1 HTTP/1.1" 200 None
2025-12-20 00:52:53,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404 HTTP/1.1" 200 None
2025-12-20 00:52:53,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404/status HTTP/1.1" 200 None
2025-12-20 00:52:53,443 [ scc.repo] DEBUG - PR 17 will-moore 'Update inset workflow for OMERO.figure 7.2.0'
2025-12-20 00:52:53,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14 HTTP/1.1" 200 None
2025-12-20 00:52:54,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14/comments HTTP/1.1" 200 None
2025-12-20 00:52:54,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None
2025-12-20 00:52:55,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:52:55,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None
2025-12-20 00:52:56,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/statuses/c2e5919f88d844ffea560784b7a800c655ff0743?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:52:56,345 [ scc.repo] DEBUG - PR 14 will-moore 'Table data by roi'
2025-12-20 00:52:56,345 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:52:56,345 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2025-12-20 00:52:56,345 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:56,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:56,348 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:52:56,350 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:52:56,350 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:52:56,353 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:52:56,356 [ scc.git] DEBUG Already up to date.
2025-12-20 00:52:56,356 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-20 00:52:56,619 [ scc.git] DEBUG From https://github.com/ome/omero-guide-figure
2025-12-20 00:52:56,619 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-20 00:52:56,623 [ scc.git] DEBUG Calling 'git fetch origin pull/17/head'
2025-12-20 00:52:56,875 [ scc.git] DEBUG From https://github.com/ome/omero-guide-figure
2025-12-20 00:52:56,875 [ scc.git] DEBUG * branch refs/pull/17/head -> FETCH_HEAD
2025-12-20 00:52:56,879 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:52:56,879 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:56,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:56,882 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c2e5919f88d844ffea560784b7a800c655ff0743'
2025-12-20 00:52:56,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:56,886 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Table data by roi) c2e5919f88d844ffea560784b7a800c655ff0743'
2025-12-20 00:52:56,893 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:52:56,896 [ scc.git] DEBUG docs/omero_figure_scripting.rst | 20 ++++++++++----------
2025-12-20 00:52:56,896 [ scc.git] DEBUG scripts/figure_table_data_shapes.js | 12 ++++++++----
2025-12-20 00:52:56,896 [ scc.git] DEBUG 2 files changed, 18 insertions(+), 14 deletions(-)
2025-12-20 00:52:57,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:52:57,040 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d142504a021b0e7f274520f08eb24796f0663404'
2025-12-20 00:52:57,043 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:57,045 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 17 (Update inset workflow for OMERO.figure 7.2.0) d142504a021b0e7f274520f08eb24796f0663404'
2025-12-20 00:52:57,052 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:52:57,054 [ scc.git] DEBUG docs/omero_figure.rst | 15 ++++++++-------
2025-12-20 00:52:57,054 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 7 deletions(-)
2025-12-20 00:52:57,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:52:57,441 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:52:57,479 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:52:57,479 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:52:57,481 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:52:57,517 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:52:57,520 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849e9ba10> has no local changes
2025-12-20 00:52:57,520 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-figure
Already up to date.
Merged PRs:
- PR 14 will-moore 'Table data by roi'
- PR 17 will-moore 'Update inset workflow for OMERO.figure 7.2.0'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:52:57,526 [ scc.git] DEBUG [detached HEAD 2dfd22a] merge master -Dorg -Ssuccess-only
2025-12-20 00:52:57,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:52:57,527 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:52:58,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/pulls HTTP/1.1" 200 None
2025-12-20 00:52:58,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/33 HTTP/1.1" 200 None
2025-12-20 00:52:58,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/33/comments HTTP/1.1" 200 None
2025-12-20 00:52:59,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/commits/df1f4976de75174c183047f37857abab4c2115e7 HTTP/1.1" 200 None
2025-12-20 00:52:59,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/commits/df1f4976de75174c183047f37857abab4c2115e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:53:00,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/commits/df1f4976de75174c183047f37857abab4c2115e7 HTTP/1.1" 200 None
2025-12-20 00:53:00,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/statuses/df1f4976de75174c183047f37857abab4c2115e7?per_page=1 HTTP/1.1" 200 None
2025-12-20 00:53:01,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/commits/df1f4976de75174c183047f37857abab4c2115e7 HTTP/1.1" 200 None
2025-12-20 00:53:01,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/commits/df1f4976de75174c183047f37857abab4c2115e7/status HTTP/1.1" 200 None
2025-12-20 00:53:01,761 [ scc.repo] DEBUG - PR 33 will-moore 'Update instructions for opening OME-Zarrs in BDV and MoBIE'
2025-12-20 00:53:02,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24 HTTP/1.1" 200 None
2025-12-20 00:53:02,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24/comments HTTP/1.1" 200 None
2025-12-20 00:53:02,704 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:02,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2025-12-20 00:53:02,705 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:02,705 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:02,707 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:02,710 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:02,710 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:02,712 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:02,715 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:02,715 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-12-20 00:53:02,996 [ scc.git] DEBUG From https://github.com/ome/omero-guide-fiji
2025-12-20 00:53:02,996 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-12-20 00:53:03,001 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:03,001 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:03,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:03,003 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...df1f4976de75174c183047f37857abab4c2115e7'
2025-12-20 00:53:03,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:03,008 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Update instructions for opening OME-Zarrs in BDV and MoBIE) df1f4976de75174c183047f37857abab4c2115e7'
2025-12-20 00:53:03,015 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:53:03,017 [ scc.git] DEBUG docs/view_mobie_zarr.rst | 39 +++++++++++++++++++++------------------
2025-12-20 00:53:03,018 [ scc.git] DEBUG 1 file changed, 21 insertions(+), 18 deletions(-)
2025-12-20 00:53:03,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:03,168 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:03,206 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:03,206 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:03,208 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:03,244 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:03,248 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa84a1ad250> has no local changes
2025-12-20 00:53:03,248 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-fiji
Excluded PRs:
- PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
Already up to date.
Merged PRs:
- PR 33 will-moore 'Update instructions for opening OME-Zarrs in BDV and MoBIE'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:03,255 [ scc.git] DEBUG [detached HEAD 8ff73ee] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:03,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:03,256 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:03,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage/pulls HTTP/1.1" 200 2
2025-12-20 00:53:03,616 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:03,616 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2025-12-20 00:53:03,616 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:03,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:03,618 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:03,621 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:03,621 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:03,623 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:03,626 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:03,626 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:03,626 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:03,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:03,628 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:03,665 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:03,665 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:03,668 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:03,704 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:03,707 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849d18810> has no local changes
2025-12-20 00:53:03,707 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-fpbioimage
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:03,712 [ scc.git] DEBUG [detached HEAD 4be6448] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:03,712 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:03,712 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:04,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/pulls HTTP/1.1" 200 2
2025-12-20 00:53:04,044 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:04,044 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2025-12-20 00:53:04,045 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,047 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:04,049 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:04,049 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:04,052 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:04,055 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:04,055 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:04,055 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,057 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:04,094 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:04,133 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:04,136 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849c95ed0> has no local changes
2025-12-20 00:53:04,136 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-ilastik
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:04,141 [ scc.git] DEBUG [detached HEAD f7e75c5] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:04,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:04,141 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:04,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction/pulls HTTP/1.1" 200 2
2025-12-20 00:53:04,455 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:04,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2025-12-20 00:53:04,455 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,457 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:04,459 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:04,459 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:04,462 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:04,465 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:04,465 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:04,465 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,467 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:04,505 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,505 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,507 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:04,545 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:04,548 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849c08f90> has no local changes
2025-12-20 00:53:04,548 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-introduction
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:04,554 [ scc.git] DEBUG [detached HEAD 693088c] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:04,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:04,554 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:04,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer/pulls HTTP/1.1" 200 2
2025-12-20 00:53:04,878 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:04,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2025-12-20 00:53:04,878 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,880 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:04,883 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:04,883 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:04,885 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:04,888 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:04,888 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:04,889 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,889 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,891 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:04,928 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:04,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:04,930 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:04,964 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:04,967 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849bc6950> has no local changes
2025-12-20 00:53:04,967 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-iviewer
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:04,972 [ scc.git] DEBUG [detached HEAD 9a800a0] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:04,972 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:04,972 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:05,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/pulls HTTP/1.1" 200 None
2025-12-20 00:53:05,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3 HTTP/1.1" 200 None
2025-12-20 00:53:06,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3/comments HTTP/1.1" 200 None
2025-12-20 00:53:06,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2025-12-20 00:53:07,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:53:07,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2025-12-20 00:53:08,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/statuses/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:53:08,300 [ scc.repo] DEBUG - PR 3 jburel 'fix build failure on rtd'
2025-12-20 00:53:08,300 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:08,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2025-12-20 00:53:08,300 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:08,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:08,303 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:08,305 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:08,305 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:08,308 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:08,310 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:08,310 [ scc.git] DEBUG Calling 'git fetch origin pull/3/head'
2025-12-20 00:53:08,574 [ scc.git] DEBUG From https://github.com/ome/omero-guide-java
2025-12-20 00:53:08,574 [ scc.git] DEBUG * branch refs/pull/3/head -> FETCH_HEAD
2025-12-20 00:53:08,579 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:08,579 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:08,579 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:08,582 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...31294bfa7f63d9dbaa984a386e6db9a945cc0fa5'
2025-12-20 00:53:08,584 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:08,586 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 3 (fix build failure on rtd) 31294bfa7f63d9dbaa984a386e6db9a945cc0fa5'
2025-12-20 00:53:08,592 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:53:08,595 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++----
2025-12-20 00:53:08,595 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-)
2025-12-20 00:53:08,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:08,743 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:08,781 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:08,781 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:08,783 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:08,822 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:08,825 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848b23450> has no local changes
2025-12-20 00:53:08,825 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-java
Already up to date.
Merged PRs:
- PR 3 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:08,831 [ scc.git] DEBUG [detached HEAD 4a229c4] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:08,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:08,831 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:09,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab/pulls HTTP/1.1" 200 2
2025-12-20 00:53:09,173 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:09,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2025-12-20 00:53:09,174 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:09,174 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:09,176 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:09,178 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:09,178 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:09,181 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:09,183 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:09,183 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:09,183 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:09,183 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:09,185 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:09,223 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:09,223 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:09,225 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:09,261 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:09,264 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849ce6a10> has no local changes
2025-12-20 00:53:09,264 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-matlab
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:09,269 [ scc.git] DEBUG [detached HEAD 07db671] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:09,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:09,269 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:09,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/pulls HTTP/1.1" 200 None
2025-12-20 00:53:10,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4 HTTP/1.1" 200 None
2025-12-20 00:53:10,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4/comments HTTP/1.1" 200 None
2025-12-20 00:53:11,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None
2025-12-20 00:53:11,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:53:12,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None
2025-12-20 00:53:12,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/statuses/4b6e2511fe820a323b2311e2b39910b6b79fcf6a?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:53:12,753 [ scc.repo] DEBUG - PR 4 pwalczysko 'Remove relative reference when it does not work'
2025-12-20 00:53:12,753 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:12,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2025-12-20 00:53:12,753 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:12,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:12,756 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:12,758 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:12,758 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:12,761 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:12,764 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:12,764 [ scc.git] DEBUG Calling 'git fetch origin pull/4/head'
2025-12-20 00:53:13,033 [ scc.git] DEBUG From https://github.com/ome/omero-guide-mde
2025-12-20 00:53:13,033 [ scc.git] DEBUG * branch refs/pull/4/head -> FETCH_HEAD
2025-12-20 00:53:13,038 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:13,038 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:13,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:13,040 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b6e2511fe820a323b2311e2b39910b6b79fcf6a'
2025-12-20 00:53:13,043 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:13,045 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 4 (Remove relative reference when it does not work) 4b6e2511fe820a323b2311e2b39910b6b79fcf6a'
2025-12-20 00:53:13,052 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:53:13,054 [ scc.git] DEBUG docs/mde_customizeObjects.rst | 4 ++--
2025-12-20 00:53:13,054 [ scc.git] DEBUG docs/mde_customizeView.rst | 4 ++--
2025-12-20 00:53:13,054 [ scc.git] DEBUG 2 files changed, 4 insertions(+), 4 deletions(-)
2025-12-20 00:53:13,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:13,195 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:13,233 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:13,233 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:13,235 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:13,273 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:13,277 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848aff850> has no local changes
2025-12-20 00:53:13,277 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-mde
Already up to date.
Merged PRs:
- PR 4 pwalczysko 'Remove relative reference when it does not work'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:13,283 [ scc.git] DEBUG [detached HEAD 72af851] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:13,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:13,283 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:13,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit/pulls HTTP/1.1" 200 2
2025-12-20 00:53:13,625 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:13,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2025-12-20 00:53:13,625 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:13,625 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:13,627 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:13,629 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:13,629 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:13,632 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:13,635 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:13,635 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:13,635 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:13,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:13,638 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:13,677 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:13,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:13,679 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:13,716 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:13,719 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849c86a50> has no local changes
2025-12-20 00:53:13,719 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-orbit
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:13,725 [ scc.git] DEBUG [detached HEAD c5aacaa] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:13,726 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:13,726 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:14,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls HTTP/1.1" 200 2
2025-12-20 00:53:14,076 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:14,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2025-12-20 00:53:14,076 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:14,076 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:14,078 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:14,080 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:14,080 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:14,083 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:14,089 [ scc.git] DEBUG Updating 0875cf1..908b335
2025-12-20 00:53:14,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls/1 HTTP/1.1" 200 None
2025-12-20 00:53:14,759 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:14,759 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:14,760 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:14,762 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:14,801 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:14,801 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:14,803 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:14,841 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:14,844 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848b1b110> has no local changes
2025-12-20 00:53:14,844 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-parade
Updating 0875cf1..908b335
Previously merged:
- PR 1 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:14,850 [ scc.git] DEBUG [detached HEAD de3a897] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:14,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:14,850 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:15,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/pulls HTTP/1.1" 200 2
2025-12-20 00:53:15,182 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:15,183 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2025-12-20 00:53:15,183 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:15,183 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:15,185 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:15,187 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:15,187 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:15,190 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:15,193 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:15,193 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:15,193 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:15,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:15,195 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:15,233 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:15,233 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:15,235 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:15,270 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:15,273 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848b2c190> has no local changes
2025-12-20 00:53:15,273 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-python
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:15,278 [ scc.git] DEBUG [detached HEAD 4ce97c6] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:15,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:15,279 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:15,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath/pulls HTTP/1.1" 200 2
2025-12-20 00:53:15,605 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:15,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2025-12-20 00:53:15,605 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:15,605 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:15,608 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:15,610 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:15,610 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:15,612 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:15,616 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:15,616 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:15,616 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:15,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:15,618 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:15,655 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:15,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:15,657 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:15,697 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:15,700 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848b2d810> has no local changes
2025-12-20 00:53:15,700 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-qupath
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:15,705 [ scc.git] DEBUG [detached HEAD ae51aa0] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:15,705 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:15,705 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:16,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/pulls HTTP/1.1" 200 None
2025-12-20 00:53:16,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11 HTTP/1.1" 200 None
2025-12-20 00:53:17,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11/comments HTTP/1.1" 200 None
2025-12-20 00:53:17,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2025-12-20 00:53:18,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:53:18,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2025-12-20 00:53:18,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/statuses/990828ddac8bc276820c2fa5952182f56b0ab241?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:53:18,868 [ scc.repo] DEBUG - PR 11 jburel 'fix build failure on rtd'
2025-12-20 00:53:18,868 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:18,869 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2025-12-20 00:53:18,869 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:18,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:18,871 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:18,874 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:18,874 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:18,876 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:18,879 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:18,879 [ scc.git] DEBUG Calling 'git fetch origin pull/11/head'
2025-12-20 00:53:19,147 [ scc.git] DEBUG From https://github.com/ome/omero-guide-r
2025-12-20 00:53:19,147 [ scc.git] DEBUG * branch refs/pull/11/head -> FETCH_HEAD
2025-12-20 00:53:19,151 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:19,151 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:19,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:19,153 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...990828ddac8bc276820c2fa5952182f56b0ab241'
2025-12-20 00:53:19,155 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:19,157 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 11 (fix build failure on rtd) 990828ddac8bc276820c2fa5952182f56b0ab241'
2025-12-20 00:53:19,164 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:53:19,167 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++----
2025-12-20 00:53:19,167 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-)
2025-12-20 00:53:19,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:19,326 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:19,363 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:19,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:19,365 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:19,404 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:19,407 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848b3b610> has no local changes
2025-12-20 00:53:19,407 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-r
Already up to date.
Merged PRs:
- PR 11 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:19,414 [ scc.git] DEBUG [detached HEAD 801f820] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:19,414 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:19,414 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:19,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls HTTP/1.1" 200 2
2025-12-20 00:53:19,790 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:19,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2025-12-20 00:53:19,790 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:19,790 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:19,793 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:19,795 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:19,795 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:19,797 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:19,800 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:19,800 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:19,800 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:19,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:19,802 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:19,841 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:19,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:19,843 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:19,880 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:19,883 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848afdd10> has no local changes
2025-12-20 00:53:19,883 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-scripts
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:19,889 [ scc.git] DEBUG [detached HEAD 5d51416] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:19,889 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:19,889 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:20,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate/pulls HTTP/1.1" 200 2
2025-12-20 00:53:20,204 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:20,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2025-12-20 00:53:20,204 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:20,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:20,206 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:20,209 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:20,209 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:20,211 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:20,214 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:20,214 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:20,214 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:20,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:20,216 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:20,252 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:20,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:20,254 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:20,289 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:20,292 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849c0b8d0> has no local changes
2025-12-20 00:53:20,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-trackmate
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:20,298 [ scc.git] DEBUG [detached HEAD d7abdf8] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:20,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:20,298 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:53:20,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload/pulls HTTP/1.1" 200 2
2025-12-20 00:53:20,635 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:53:20,635 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2025-12-20 00:53:20,635 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:20,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:20,637 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:53:20,639 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:53:20,640 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:53:20,642 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:53:20,645 [ scc.git] DEBUG Already up to date.
2025-12-20 00:53:20,645 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:53:20,645 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:20,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:20,647 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:53:20,685 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:53:20,685 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:53:20,687 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:20,724 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:20,726 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa848bb4a10> has no local changes
2025-12-20 00:53:20,727 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-upload
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:20,732 [ scc.git] DEBUG [detached HEAD 46bff97] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:20,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:20,733 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:53:20,797 [ scc.config] DEBUG Found submodule.cellprofiler.url
2025-12-20 00:53:21,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:21,046 [ scc.config] DEBUG Found submodule.download.url
2025-12-20 00:53:21,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:21,433 [ scc.config] DEBUG Found submodule.figure.url
2025-12-20 00:53:21,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:21,819 [ scc.config] DEBUG Found submodule.fiji.url
2025-12-20 00:53:22,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:22,216 [ scc.config] DEBUG Found submodule.fpbioimage.url
2025-12-20 00:53:22,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:22,694 [ scc.config] DEBUG Found submodule.ilastik.url
2025-12-20 00:53:23,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:23,083 [ scc.config] DEBUG Found submodule.introduction.url
2025-12-20 00:53:23,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:23,473 [ scc.config] DEBUG Found submodule.iviewer.url
2025-12-20 00:53:23,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:23,860 [ scc.config] DEBUG Found submodule.java.url
2025-12-20 00:53:24,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:24,272 [ scc.config] DEBUG Found submodule.matlab.url
2025-12-20 00:53:24,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:24,673 [ scc.config] DEBUG Found submodule.mde.url
2025-12-20 00:53:25,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:25,067 [ scc.config] DEBUG Found submodule.orbit.url
2025-12-20 00:53:25,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:25,458 [ scc.config] DEBUG Found submodule.parade.url
2025-12-20 00:53:25,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:25,862 [ scc.config] DEBUG Found submodule.python.url
2025-12-20 00:53:26,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:26,262 [ scc.config] DEBUG Found submodule.qupath.url
2025-12-20 00:53:26,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:26,658 [ scc.config] DEBUG Found submodule.r.url
2025-12-20 00:53:27,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:27,047 [ scc.config] DEBUG Found submodule.scripts.url
2025-12-20 00:53:27,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:27,442 [ scc.config] DEBUG Found submodule.trackmate.url
2025-12-20 00:53:27,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:27,841 [ scc.config] DEBUG Found submodule.upload.url
2025-12-20 00:53:28,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:53:28,253 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:53:28,320 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa849bd49d0> has local changes
2025-12-20 00:53:28,320 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Merged PRs:
- PR 301 pwalczysko 'Add I3D bio guide to omero-guides'
Repository: ome/omero-guide-cellprofiler
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Repository: ome/omero-guide-figure
Already up to date.
Merged PRs:
- PR 14 will-moore 'Table data by roi'
- PR 17 will-moore 'Update inset workflow for OMERO.figure 7.2.0'
Repository: ome/omero-guide-fiji
Excluded PRs:
- PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
Already up to date.
Merged PRs:
- PR 33 will-moore 'Update instructions for opening OME-Zarrs in BDV and MoBIE'
Repository: ome/omero-guide-fpbioimage
Already up to date.
Repository: ome/omero-guide-ilastik
Already up to date.
Repository: ome/omero-guide-introduction
Already up to date.
Repository: ome/omero-guide-iviewer
Already up to date.
Repository: ome/omero-guide-java
Already up to date.
Merged PRs:
- PR 3 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-matlab
Already up to date.
Repository: ome/omero-guide-mde
Already up to date.
Merged PRs:
- PR 4 pwalczysko 'Remove relative reference when it does not work'
Repository: ome/omero-guide-orbit
Already up to date.
Repository: ome/omero-guide-parade
Updating 0875cf1..908b335
Previously merged:
- PR 1 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-python
Already up to date.
Repository: ome/omero-guide-qupath
Already up to date.
Repository: ome/omero-guide-r
Already up to date.
Merged PRs:
- PR 11 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-scripts
Already up to date.
Repository: ome/omero-guide-trackmate
Already up to date.
Repository: ome/omero-guide-upload
Already up to date.
Generated by OMERO-guides-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/3/)'
2025-12-20 00:53:28,330 [ scc.git] DEBUG [detached HEAD 80eab5e] merge master -Dorg -Ssuccess-only
2025-12-20 00:53:28,330 [ scc.git] DEBUG 20 files changed, 38 insertions(+), 38 deletions(-)
2025-12-20 00:53:28,331 [ scc.merge] INFO Repository: ome/omero-guides
2025-12-20 00:53:28,331 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:53:28,331 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2025-12-20 00:53:28,331 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,331 [ scc.merge] INFO - PR 301 pwalczysko 'Add I3D bio guide to omero-guides'
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Repository: ome/omero-guide-cellprofiler
2025-12-20 00:53:28,331 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,331 [ scc.merge] INFO - PR 24 jburel 'Remove binder'
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Repository: ome/omero-guide-download
2025-12-20 00:53:28,331 [ scc.merge] INFO Updating 4b1b912..a27d196
2025-12-20 00:53:28,331 [ scc.merge] INFO Previously merged:
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Repository: ome/omero-guide-figure
2025-12-20 00:53:28,331 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,331 [ scc.merge] INFO - PR 14 will-moore 'Table data by roi'
2025-12-20 00:53:28,331 [ scc.merge] INFO - PR 17 will-moore 'Update inset workflow for OMERO.figure 7.2.0'
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,331 [ scc.merge] INFO Repository: ome/omero-guide-fiji
2025-12-20 00:53:28,331 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:53:28,331 [ scc.merge] INFO - PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
2025-12-20 00:53:28,331 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,331 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,332 [ scc.merge] INFO - PR 33 will-moore 'Update instructions for opening OME-Zarrs in BDV and MoBIE'
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-fpbioimage
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-ilastik
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-introduction
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-iviewer
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-java
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,332 [ scc.merge] INFO - PR 3 jburel 'fix build failure on rtd'
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-matlab
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-mde
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,332 [ scc.merge] INFO - PR 4 pwalczysko 'Remove relative reference when it does not work'
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-orbit
2025-12-20 00:53:28,332 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO
2025-12-20 00:53:28,332 [ scc.merge] INFO Repository: ome/omero-guide-parade
2025-12-20 00:53:28,332 [ scc.merge] INFO Updating 0875cf1..908b335
2025-12-20 00:53:28,332 [ scc.merge] INFO Previously merged:
2025-12-20 00:53:28,333 [ scc.merge] INFO - PR 1 jburel 'fix build failure on rtd'
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Repository: ome/omero-guide-python
2025-12-20 00:53:28,333 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Repository: ome/omero-guide-qupath
2025-12-20 00:53:28,333 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Repository: ome/omero-guide-r
2025-12-20 00:53:28,333 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Merged PRs:
2025-12-20 00:53:28,333 [ scc.merge] INFO - PR 11 jburel 'fix build failure on rtd'
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Repository: ome/omero-guide-scripts
2025-12-20 00:53:28,333 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Repository: ome/omero-guide-trackmate
2025-12-20 00:53:28,333 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO Repository: ome/omero-guide-upload
2025-12-20 00:53:28,333 [ scc.merge] INFO Already up to date.
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] INFO
2025-12-20 00:53:28,333 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-20 00:53:28,333 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,335 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2025-12-20 00:53:28,335 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,337 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2025-12-20 00:53:28,338 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2025-12-20 00:53:28,340 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2025-12-20 00:53:28,342 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,344 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,344 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2025-12-20 00:53:28,344 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2025-12-20 00:53:28,346 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2025-12-20 00:53:28,348 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,351 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2025-12-20 00:53:28,351 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2025-12-20 00:53:28,353 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2025-12-20 00:53:28,355 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2025-12-20 00:53:28,357 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2025-12-20 00:53:28,359 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,361 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,361 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2025-12-20 00:53:28,361 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,363 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2025-12-20 00:53:28,364 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2025-12-20 00:53:28,366 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2025-12-20 00:53:28,368 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2025-12-20 00:53:28,370 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2025-12-20 00:53:28,372 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2025-12-20 00:53:28,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2025-12-20 00:53:28,374 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:53:28,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
Update component versions
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python3.11: can't open file '/home/omero/workspace/OMERO-guides-push/parade/setup.py': [Errno 2] No such file or directory
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python3.11: can't open file '/home/omero/workspace/OMERO-guides-push/python/setup.py': [Errno 2] No such file or directory
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python3.11: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-guides-push/r/setup.py': [Errno 2] No such file or directory
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python3.11: can't open file '/home/omero/workspace/OMERO-guides-push/scripts/setup.py': [Errno 2] No such file or directory
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Commit all component version changes
Entering 'cellprofiler'
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Entering 'iviewer'
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Entering 'mde'
Entering 'orbit'
Entering 'parade'
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Entering 'qupath'
Entering 'r'
Entering 'scripts'
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Entering 'upload'
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2025-12-20 00:54:50,429 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-guides/tree/merge_ci
