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Started by upstream project "Trigger" build number 72
originally caused by:
 Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-insight-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-insight-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
 > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-insight-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-insight.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-insight.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-insight.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision efbf7e35ce95c195c753051f26f92a075e8b5dd3 (refs/remotes/origin/master)
Commit message: "Bump version: 5.8.4 → 5.8.5-SNAPSHOT"
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10
 > git rev-list --no-walk efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10
Cleaning workspace
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 65
[Pipeline] sh
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
+ pushd build
~/workspace/OMERO-insight-push/build ~/workspace/OMERO-insight-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-insight-push
+ python3 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-24.0
+ python3 -m pip install scc
Collecting scc
  Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
Collecting PyYAML>=5.1 (from scc)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
  Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
  Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
  Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
  Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached cryptography-42.0.7-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
  Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.19.1-py3-none-any.whl (48 kB)
Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.31.0-py3-none-any.whl (62 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-42.0.7-cp39-abi3-manylinux_2_28_x86_64.whl (3.8 MB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.7 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.11.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-insight.git
+ BASE_REPO=omero-insight.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-05-16 00:58:07,927 [  scc.config] DEBUG Found github.token
2024-05-16 00:58:07,930 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-05-16 00:58:08,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:08,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:08,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-05-16 00:58:08,974 [      scc.gh] DEBUG 1933 remaining from 5000 (Reset at 01:05
2024-05-16 00:58:08,975 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-05-16 00:58:08,980 [     scc.git] DEBUG Check current status
2024-05-16 00:58:08,980 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-16 00:58:08,985 [     scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-05-16 00:58:08,986 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-16 00:58:09,070 [  scc.config] DEBUG Found remote.origin.url
2024-05-16 00:58:09,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2024-05-16 00:58:09,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-05-16 00:58:10,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-05-16 00:58:10,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-05-16 00:58:11,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-05-16 00:58:11,183 [     scc.git] DEBUG Resetting...
2024-05-16 00:58:11,183 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-05-16 00:58:11,203 [     scc.git] DEBUG HEAD is now at efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-05-16 00:58:11,204 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-05-16 00:58:11,244 [     scc.git] DEBUG Check current status
2024-05-16 00:58:11,245 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-16 00:58:11,250 [     scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-05-16 00:58:11,250 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-16 00:58:11,294 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-05-16 00:58:11,294 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-05-16 00:58:11,295 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-05-16 00:58:11,295 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-05-16 00:58:11,295 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-05-16 00:58:11,295 [    scc.repo] DEBUG ## PRs found:
2024-05-16 00:58:11,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2024-05-16 00:58:12,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None
2024-05-16 00:58:12,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None
2024-05-16 00:58:13,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None
2024-05-16 00:58:13,223 [    scc.repo] DEBUG   - PR 436 dominikl 'Update apache common libs'
2024-05-16 00:58:13,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None
2024-05-16 00:58:14,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None
2024-05-16 00:58:14,196 [    scc.repo] DEBUG   - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-16 00:58:14,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None
2024-05-16 00:58:15,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None
2024-05-16 00:58:15,148 [    scc.repo] DEBUG   - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-16 00:58:15,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2024-05-16 00:58:16,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2024-05-16 00:58:16,173 [    scc.repo] DEBUG ## Branches found:
2024-05-16 00:58:16,173 [     scc.git] DEBUG Get sha1 of %s
2024-05-16 00:58:16,173 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:16,178 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-05-16 00:58:16,183 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-05-16 00:58:16,184 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-05-16 00:58:16,190 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-05-16 00:58:16,196 [     scc.git] DEBUG Already up to date.

2024-05-16 00:58:16,197 [     scc.git] DEBUG Calling 'git fetch origin pull/333/head'
2024-05-16 00:58:16,607 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-16 00:58:16,607 [     scc.git] DEBUG  * branch                refs/pull/333/head -> FETCH_HEAD
2024-05-16 00:58:16,613 [     scc.git] DEBUG Calling 'git fetch origin pull/385/head'
2024-05-16 00:58:17,063 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-16 00:58:17,064 [     scc.git] DEBUG  * branch                refs/pull/385/head -> FETCH_HEAD
2024-05-16 00:58:17,071 [     scc.git] DEBUG Calling 'git fetch origin pull/436/head'
2024-05-16 00:58:17,475 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-16 00:58:17,476 [     scc.git] DEBUG  * branch                refs/pull/436/head -> FETCH_HEAD
2024-05-16 00:58:17,484 [     scc.git] DEBUG ## Unique users: []
2024-05-16 00:58:17,484 [     scc.git] DEBUG Get sha1 of %s
2024-05-16 00:58:17,484 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:17,488 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-16 00:58:17,496 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:17,502 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-16 00:58:17,556 [     scc.git] DEBUG Auto-merging build.gradle
2024-05-16 00:58:17,561 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-05-16 00:58:17,564 [     scc.git] DEBUG  build.gradle | 8 ++++----
2024-05-16 00:58:17,564 [     scc.git] DEBUG  1 file changed, 4 insertions(+), 4 deletions(-)
2024-05-16 00:58:17,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:17,719 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-16 00:58:17,727 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:17,732 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-16 00:58:17,869 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-05-16 00:58:17,874 [     scc.git] DEBUG  .../shoola/agents/measurement/view/ServerROITable.java      | 13 ++++++++++---
2024-05-16 00:58:17,875 [     scc.git] DEBUG  1 file changed, 10 insertions(+), 3 deletions(-)
2024-05-16 00:58:18,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:18,126 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-16 00:58:18,135 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:18,142 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-16 00:58:18,228 [     scc.git] DEBUG Auto-merging build.gradle
2024-05-16 00:58:18,234 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-05-16 00:58:18,239 [     scc.git] DEBUG  build.gradle | 3 ++-
2024-05-16 00:58:18,239 [     scc.git] DEBUG  1 file changed, 2 insertions(+), 1 deletion(-)
2024-05-16 00:58:18,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:18,534 [     scc.git] DEBUG Calling 'git submodule update'
2024-05-16 00:58:18,578 [     scc.git] DEBUG Get sha1 of %s
2024-05-16 00:58:18,579 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:18,583 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-05-16 00:58:18,623 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f84ae779ac0> has no local changes
2024-05-16 00:58:18,624 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-insight
Excluded PRs:
  - PR 437 dominikl 'Remove apache commons io' (stage: draft)
  - PR 377 sukunis 'Fix ontology loads' (exclude comment)
  - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.

Merged PRs:
  - PR 333 jburel 'drop compatibility to test new Jenkins'
  - PR 385 jburel 'handle case where ROI is not longer in table'
  - PR 436 dominikl 'Update apache common libs'

Generated by OMERO-insight-push#61 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/61/)'
2024-05-16 00:58:18,638 [     scc.git] DEBUG [detached HEAD cac055f96] merge master -Dorg -Snone
2024-05-16 00:58:18,638 [   scc.merge] INFO  Repository: ome/omero-insight
2024-05-16 00:58:18,638 [   scc.merge] INFO  Excluded PRs:
2024-05-16 00:58:18,638 [   scc.merge] INFO    - PR 437 dominikl 'Remove apache commons io' (stage: draft)
2024-05-16 00:58:18,638 [   scc.merge] INFO    - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2024-05-16 00:58:18,638 [   scc.merge] INFO    - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2024-05-16 00:58:18,638 [   scc.merge] INFO  Already up to date.
2024-05-16 00:58:18,638 [   scc.merge] INFO  
2024-05-16 00:58:18,638 [   scc.merge] INFO  Merged PRs:
2024-05-16 00:58:18,639 [   scc.merge] INFO    - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-16 00:58:18,639 [   scc.merge] INFO    - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-16 00:58:18,639 [   scc.merge] INFO    - PR 436 dominikl 'Update apache common libs'
2024-05-16 00:58:18,639 [   scc.merge] INFO  
2024-05-16 00:58:18,639 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-05-16 00:58:18,639 [     scc.git] DEBUG Calling 'git remote'
Merge all submodules2024-05-16 00:58:19,160 [  scc.config] DEBUG Found github.token
2024-05-16 00:58:19,164 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-05-16 00:58:19,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:19,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:20,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-05-16 00:58:20,174 [      scc.gh] DEBUG 1889 remaining from 5000 (Reset at 01:05
2024-05-16 00:58:20,175 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-05-16 00:58:20,180 [     scc.git] DEBUG Check current status
2024-05-16 00:58:20,181 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-16 00:58:20,186 [     scc.git] DEBUG cac055f96 merge master -Dorg -Snone
2024-05-16 00:58:20,187 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-16 00:58:20,248 [  scc.config] DEBUG Found remote.origin.url
2024-05-16 00:58:20,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2024-05-16 00:58:21,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-05-16 00:58:21,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-05-16 00:58:22,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-05-16 00:58:22,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-05-16 00:58:22,426 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-05-16 00:58:22,473 [     scc.git] DEBUG Resetting...
2024-05-16 00:58:22,474 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-05-16 00:58:22,496 [     scc.git] DEBUG HEAD is now at cac055f96 merge master -Dorg -Snone
2024-05-16 00:58:22,497 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-05-16 00:58:22,551 [     scc.git] DEBUG Check current status
2024-05-16 00:58:22,551 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-16 00:58:22,557 [     scc.git] DEBUG cac055f96 merge master -Dorg -Snone
2024-05-16 00:58:22,557 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-16 00:58:22,609 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-05-16 00:58:22,609 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-05-16 00:58:22,610 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-05-16 00:58:22,610 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-05-16 00:58:22,610 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-05-16 00:58:22,610 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-05-16 00:58:22,610 [    scc.repo] DEBUG ## PRs found:
2024-05-16 00:58:24,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2024-05-16 00:58:24,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None
2024-05-16 00:58:25,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None
2024-05-16 00:58:25,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None
2024-05-16 00:58:26,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-05-16 00:58:26,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-05-16 00:58:27,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-05-16 00:58:27,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-05-16 00:58:27,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/e43ef9b64e4734d327b92745588603a350b420c9?per_page=1 HTTP/1.1" 200 None
2024-05-16 00:58:28,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-05-16 00:58:28,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/status HTTP/1.1" 200 None
2024-05-16 00:58:28,803 [    scc.repo] DEBUG   - PR 436 dominikl 'Update apache common libs'
2024-05-16 00:58:29,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None
2024-05-16 00:58:29,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None
2024-05-16 00:58:30,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-05-16 00:58:30,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-05-16 00:58:31,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-05-16 00:58:31,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-05-16 00:58:32,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/9466472925265b0b02b7c054c55d62705a9b8215?per_page=1 HTTP/1.1" 200 None
2024-05-16 00:58:32,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-05-16 00:58:33,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/status HTTP/1.1" 200 None
2024-05-16 00:58:33,041 [    scc.repo] DEBUG   - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-16 00:58:33,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None
2024-05-16 00:58:33,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None
2024-05-16 00:58:34,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None
2024-05-16 00:58:34,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-05-16 00:58:35,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None
2024-05-16 00:58:35,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/b66e93349e2ddb5c1908f922c7c63a46722bd48e?per_page=1 HTTP/1.1" 200 2
2024-05-16 00:58:35,819 [    scc.repo] DEBUG   - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-16 00:58:36,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2024-05-16 00:58:36,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2024-05-16 00:58:36,816 [    scc.repo] DEBUG ## Branches found:
2024-05-16 00:58:36,816 [     scc.git] DEBUG Get sha1 of %s
2024-05-16 00:58:36,816 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:36,823 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-05-16 00:58:36,829 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-05-16 00:58:36,830 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-05-16 00:58:36,837 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-05-16 00:58:36,846 [     scc.git] DEBUG Already up to date.

2024-05-16 00:58:36,846 [     scc.git] DEBUG Calling 'git fetch origin pull/333/head'
2024-05-16 00:58:37,224 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-16 00:58:37,224 [     scc.git] DEBUG  * branch                refs/pull/333/head -> FETCH_HEAD
2024-05-16 00:58:37,232 [     scc.git] DEBUG Calling 'git fetch origin pull/385/head'
2024-05-16 00:58:37,616 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-16 00:58:37,616 [     scc.git] DEBUG  * branch                refs/pull/385/head -> FETCH_HEAD
2024-05-16 00:58:37,622 [     scc.git] DEBUG Calling 'git fetch origin pull/436/head'
2024-05-16 00:58:38,030 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-16 00:58:38,030 [     scc.git] DEBUG  * branch                refs/pull/436/head -> FETCH_HEAD
2024-05-16 00:58:38,039 [     scc.git] DEBUG ## Unique users: []
2024-05-16 00:58:38,040 [     scc.git] DEBUG Get sha1 of %s
2024-05-16 00:58:38,040 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:38,046 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-16 00:58:38,056 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:38,064 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-16 00:58:38,074 [     scc.git] DEBUG Already up to date.
2024-05-16 00:58:38,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:38,233 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-16 00:58:38,244 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:38,253 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-16 00:58:38,262 [     scc.git] DEBUG Already up to date.
2024-05-16 00:58:38,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:38,642 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-16 00:58:38,651 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:38,657 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-16 00:58:38,667 [     scc.git] DEBUG Already up to date.
2024-05-16 00:58:39,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-16 00:58:39,048 [     scc.git] DEBUG Calling 'git submodule update'
2024-05-16 00:58:39,111 [     scc.git] DEBUG Get sha1 of %s
2024-05-16 00:58:39,111 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-16 00:58:39,120 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-05-16 00:58:39,175 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-05-16 00:58:39,189 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fdc13ef3ac0> has no local changes
2024-05-16 00:58:39,189 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-insight
Excluded PRs:
  - PR 437 dominikl 'Remove apache commons io' (stage: draft)
  - PR 377 sukunis 'Fix ontology loads' (exclude comment)
  - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.

Merged PRs:
  - PR 333 jburel 'drop compatibility to test new Jenkins'
  - PR 385 jburel 'handle case where ROI is not longer in table'
  - PR 436 dominikl 'Update apache common libs'

Generated by OMERO-insight-push#61 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/61/)'
2024-05-16 00:58:39,369 [     scc.git] DEBUG [detached HEAD 59d369de9] merge master -Dorg -Ssuccess-only
2024-05-16 00:58:39,370 [   scc.merge] INFO  Repository: ome/omero-insight
2024-05-16 00:58:39,370 [   scc.merge] INFO  Excluded PRs:
2024-05-16 00:58:39,370 [   scc.merge] INFO    - PR 437 dominikl 'Remove apache commons io' (stage: draft)
2024-05-16 00:58:39,370 [   scc.merge] INFO    - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2024-05-16 00:58:39,370 [   scc.merge] INFO    - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2024-05-16 00:58:39,370 [   scc.merge] INFO  Already up to date.
2024-05-16 00:58:39,370 [   scc.merge] INFO  
2024-05-16 00:58:39,370 [   scc.merge] INFO  Merged PRs:
2024-05-16 00:58:39,370 [   scc.merge] INFO    - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-16 00:58:39,370 [   scc.merge] INFO    - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-16 00:58:39,370 [   scc.merge] INFO    - PR 436 dominikl 'Update apache common libs'
2024-05-16 00:58:39,370 [   scc.merge] INFO  
2024-05-16 00:58:39,370 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-05-16 00:58:39,371 [     scc.git] DEBUG Calling 'git remote'
Update component versions
Updating omero-gateway from 5.9.1 to 5.9.2-SNAPSHOT
Commit all component version changes
[detached HEAD 4304c2d89] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
2024-05-16 00:58:46,780 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-insight/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS