Skip to content

Console Output

Started by upstream project "Trigger" build number 80
originally caused by:
 Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor on ‘testintegration’
Running on testintegration in /home/omero/workspace/OMERO-insight-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-insight-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
 > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
Checking out Revision efbf7e35ce95c195c753051f26f92a075e8b5dd3 (refs/remotes/origin/master)
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-insight-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-insight.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-insight.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-insight.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10
Commit message: "Bump version: 5.8.4 → 5.8.5-SNAPSHOT"
 > git rev-list --no-walk efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10
Cleaning workspace
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 72
[Pipeline] sh
+ pushd build
~/workspace/OMERO-insight-push/build ~/workspace/OMERO-insight-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
+ popd
~/workspace/OMERO-insight-push
+ python3 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-24.0
+ python3 -m pip install scc
Collecting scc
  Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
Collecting PyYAML>=5.1 (from scc)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
  Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
  Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Using cached requests-2.32.2-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
  Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
  Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached cryptography-42.0.7-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
  Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.19.1-py3-none-any.whl (48 kB)
Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.32.2-py3-none-any.whl (63 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-42.0.7-cp39-abi3-manylinux_2_28_x86_64.whl (3.8 MB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.7 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.2 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.11.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-insight.git
+ BASE_REPO=omero-insight.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-05-23 00:59:09,448 [  scc.config] DEBUG Found github.token
2024-05-23 00:59:09,451 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-05-23 00:59:09,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:10,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:10,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-05-23 00:59:10,460 [      scc.gh] DEBUG 4424 remaining from 5000 (Reset at 01:05
2024-05-23 00:59:10,461 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-05-23 00:59:10,468 [     scc.git] DEBUG Check current status
2024-05-23 00:59:10,468 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-23 00:59:10,474 [     scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-05-23 00:59:10,475 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-23 00:59:10,528 [  scc.config] DEBUG Found remote.origin.url
2024-05-23 00:59:10,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2024-05-23 00:59:11,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-05-23 00:59:11,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-05-23 00:59:12,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-05-23 00:59:12,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-05-23 00:59:12,695 [     scc.git] DEBUG Resetting...
2024-05-23 00:59:12,695 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-05-23 00:59:12,711 [     scc.git] DEBUG HEAD is now at efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-05-23 00:59:12,712 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-05-23 00:59:12,754 [     scc.git] DEBUG Check current status
2024-05-23 00:59:12,754 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-23 00:59:12,759 [     scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-05-23 00:59:12,759 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-23 00:59:12,812 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-05-23 00:59:12,812 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-05-23 00:59:12,812 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-05-23 00:59:12,813 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-05-23 00:59:12,813 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-05-23 00:59:12,813 [    scc.repo] DEBUG ## PRs found:
2024-05-23 00:59:13,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2024-05-23 00:59:13,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None
2024-05-23 00:59:14,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None
2024-05-23 00:59:14,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None
2024-05-23 00:59:14,688 [    scc.repo] DEBUG   - PR 436 dominikl 'Update apache common libs'
2024-05-23 00:59:15,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None
2024-05-23 00:59:15,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None
2024-05-23 00:59:15,598 [    scc.repo] DEBUG   - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-23 00:59:16,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None
2024-05-23 00:59:16,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None
2024-05-23 00:59:16,541 [    scc.repo] DEBUG   - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-23 00:59:17,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2024-05-23 00:59:17,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2024-05-23 00:59:17,560 [    scc.repo] DEBUG ## Branches found:
2024-05-23 00:59:17,560 [     scc.git] DEBUG Get sha1 of %s
2024-05-23 00:59:17,560 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:17,565 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-05-23 00:59:17,570 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-05-23 00:59:17,570 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-05-23 00:59:17,575 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-05-23 00:59:17,581 [     scc.git] DEBUG Already up to date.

2024-05-23 00:59:17,581 [     scc.git] DEBUG Calling 'git fetch origin pull/333/head'
2024-05-23 00:59:17,964 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-23 00:59:17,965 [     scc.git] DEBUG  * branch                refs/pull/333/head -> FETCH_HEAD
2024-05-23 00:59:17,969 [     scc.git] DEBUG Calling 'git fetch origin pull/385/head'
2024-05-23 00:59:18,353 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-23 00:59:18,354 [     scc.git] DEBUG  * branch                refs/pull/385/head -> FETCH_HEAD
2024-05-23 00:59:18,358 [     scc.git] DEBUG Calling 'git fetch origin pull/436/head'
2024-05-23 00:59:18,735 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-23 00:59:18,735 [     scc.git] DEBUG  * branch                refs/pull/436/head -> FETCH_HEAD
2024-05-23 00:59:18,741 [     scc.git] DEBUG ## Unique users: []
2024-05-23 00:59:18,741 [     scc.git] DEBUG Get sha1 of %s
2024-05-23 00:59:18,741 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:18,745 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-23 00:59:18,751 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:18,754 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-23 00:59:18,775 [     scc.git] DEBUG Auto-merging build.gradle
2024-05-23 00:59:18,778 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-05-23 00:59:18,781 [     scc.git] DEBUG  build.gradle | 8 ++++----
2024-05-23 00:59:18,781 [     scc.git] DEBUG  1 file changed, 4 insertions(+), 4 deletions(-)
2024-05-23 00:59:18,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:18,957 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-23 00:59:18,963 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:18,966 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-23 00:59:19,007 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-05-23 00:59:19,010 [     scc.git] DEBUG  .../shoola/agents/measurement/view/ServerROITable.java      | 13 ++++++++++---
2024-05-23 00:59:19,010 [     scc.git] DEBUG  1 file changed, 10 insertions(+), 3 deletions(-)
2024-05-23 00:59:19,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:19,369 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-23 00:59:19,375 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:19,379 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-23 00:59:19,407 [     scc.git] DEBUG Auto-merging build.gradle
2024-05-23 00:59:19,410 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-05-23 00:59:19,413 [     scc.git] DEBUG  build.gradle | 3 ++-
2024-05-23 00:59:19,413 [     scc.git] DEBUG  1 file changed, 2 insertions(+), 1 deletion(-)
2024-05-23 00:59:19,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:19,778 [     scc.git] DEBUG Calling 'git submodule update'
2024-05-23 00:59:19,824 [     scc.git] DEBUG Get sha1 of %s
2024-05-23 00:59:19,824 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:19,830 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-05-23 00:59:19,873 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7ff524a38ac0> has no local changes
2024-05-23 00:59:19,874 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-insight
Excluded PRs:
  - PR 437 dominikl 'Remove apache commons io' (stage: draft)
  - PR 377 sukunis 'Fix ontology loads' (exclude comment)
  - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.

Merged PRs:
  - PR 333 jburel 'drop compatibility to test new Jenkins'
  - PR 385 jburel 'handle case where ROI is not longer in table'
  - PR 436 dominikl 'Update apache common libs'

Generated by OMERO-insight-push#68 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/68/)'
2024-05-23 00:59:19,899 [     scc.git] DEBUG [detached HEAD 7296a3a03] merge master -Dorg -Snone
2024-05-23 00:59:19,899 [   scc.merge] INFO  Repository: ome/omero-insight
2024-05-23 00:59:19,899 [   scc.merge] INFO  Excluded PRs:
2024-05-23 00:59:19,899 [   scc.merge] INFO    - PR 437 dominikl 'Remove apache commons io' (stage: draft)
2024-05-23 00:59:19,899 [   scc.merge] INFO    - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2024-05-23 00:59:19,899 [   scc.merge] INFO    - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2024-05-23 00:59:19,899 [   scc.merge] INFO  Already up to date.
2024-05-23 00:59:19,899 [   scc.merge] INFO  
2024-05-23 00:59:19,899 [   scc.merge] INFO  Merged PRs:
2024-05-23 00:59:19,899 [   scc.merge] INFO    - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-23 00:59:19,899 [   scc.merge] INFO    - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-23 00:59:19,899 [   scc.merge] INFO    - PR 436 dominikl 'Update apache common libs'
2024-05-23 00:59:19,899 [   scc.merge] INFO  
2024-05-23 00:59:19,900 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-05-23 00:59:19,900 [     scc.git] DEBUG Calling 'git remote'
Merge all submodules2024-05-23 00:59:20,443 [  scc.config] DEBUG Found github.token
2024-05-23 00:59:20,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-05-23 00:59:20,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:21,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:21,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-05-23 00:59:21,467 [      scc.gh] DEBUG 4396 remaining from 5000 (Reset at 01:05
2024-05-23 00:59:21,468 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-05-23 00:59:21,473 [     scc.git] DEBUG Check current status
2024-05-23 00:59:21,473 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-23 00:59:21,478 [     scc.git] DEBUG 7296a3a03 merge master -Dorg -Snone
2024-05-23 00:59:21,478 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-23 00:59:21,521 [  scc.config] DEBUG Found remote.origin.url
2024-05-23 00:59:21,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2024-05-23 00:59:22,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-05-23 00:59:22,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-05-23 00:59:23,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-05-23 00:59:23,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-05-23 00:59:23,727 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-05-23 00:59:23,767 [     scc.git] DEBUG Resetting...
2024-05-23 00:59:23,767 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-05-23 00:59:23,785 [     scc.git] DEBUG HEAD is now at 7296a3a03 merge master -Dorg -Snone
2024-05-23 00:59:23,786 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-05-23 00:59:23,825 [     scc.git] DEBUG Check current status
2024-05-23 00:59:23,825 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-05-23 00:59:23,830 [     scc.git] DEBUG 7296a3a03 merge master -Dorg -Snone
2024-05-23 00:59:23,830 [     scc.git] DEBUG Calling 'git submodule status'
2024-05-23 00:59:23,870 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-05-23 00:59:23,871 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-05-23 00:59:23,871 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-05-23 00:59:23,871 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-05-23 00:59:23,871 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-05-23 00:59:23,871 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-05-23 00:59:23,871 [    scc.repo] DEBUG ## PRs found:
2024-05-23 00:59:24,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2024-05-23 00:59:24,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None
2024-05-23 00:59:25,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None
2024-05-23 00:59:25,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None
2024-05-23 00:59:26,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-05-23 00:59:26,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-05-23 00:59:27,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-05-23 00:59:27,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-05-23 00:59:28,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/e43ef9b64e4734d327b92745588603a350b420c9?per_page=1 HTTP/1.1" 200 None
2024-05-23 00:59:28,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-05-23 00:59:29,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/status HTTP/1.1" 200 None
2024-05-23 00:59:29,017 [    scc.repo] DEBUG   - PR 436 dominikl 'Update apache common libs'
2024-05-23 00:59:29,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None
2024-05-23 00:59:29,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None
2024-05-23 00:59:30,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-05-23 00:59:30,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-05-23 00:59:31,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-05-23 00:59:31,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-05-23 00:59:32,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/9466472925265b0b02b7c054c55d62705a9b8215?per_page=1 HTTP/1.1" 200 None
2024-05-23 00:59:32,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-05-23 00:59:33,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/status HTTP/1.1" 200 None
2024-05-23 00:59:33,273 [    scc.repo] DEBUG   - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-23 00:59:33,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None
2024-05-23 00:59:34,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None
2024-05-23 00:59:34,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None
2024-05-23 00:59:35,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-05-23 00:59:35,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None
2024-05-23 00:59:36,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/b66e93349e2ddb5c1908f922c7c63a46722bd48e?per_page=1 HTTP/1.1" 200 2
2024-05-23 00:59:36,210 [    scc.repo] DEBUG   - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-23 00:59:36,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2024-05-23 00:59:37,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2024-05-23 00:59:37,188 [    scc.repo] DEBUG ## Branches found:
2024-05-23 00:59:37,188 [     scc.git] DEBUG Get sha1 of %s
2024-05-23 00:59:37,188 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:37,192 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-05-23 00:59:37,196 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-05-23 00:59:37,196 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-05-23 00:59:37,201 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-05-23 00:59:37,207 [     scc.git] DEBUG Already up to date.

2024-05-23 00:59:37,207 [     scc.git] DEBUG Calling 'git fetch origin pull/333/head'
2024-05-23 00:59:37,573 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-23 00:59:37,573 [     scc.git] DEBUG  * branch                refs/pull/333/head -> FETCH_HEAD
2024-05-23 00:59:37,578 [     scc.git] DEBUG Calling 'git fetch origin pull/385/head'
2024-05-23 00:59:37,949 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-23 00:59:37,950 [     scc.git] DEBUG  * branch                refs/pull/385/head -> FETCH_HEAD
2024-05-23 00:59:37,955 [     scc.git] DEBUG Calling 'git fetch origin pull/436/head'
2024-05-23 00:59:38,349 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-05-23 00:59:38,349 [     scc.git] DEBUG  * branch                refs/pull/436/head -> FETCH_HEAD
2024-05-23 00:59:38,355 [     scc.git] DEBUG ## Unique users: []
2024-05-23 00:59:38,355 [     scc.git] DEBUG Get sha1 of %s
2024-05-23 00:59:38,355 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:38,360 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-23 00:59:38,368 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:38,373 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-05-23 00:59:38,381 [     scc.git] DEBUG Already up to date.
2024-05-23 00:59:38,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:38,545 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-23 00:59:38,554 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:38,560 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215'
2024-05-23 00:59:38,567 [     scc.git] DEBUG Already up to date.
2024-05-23 00:59:38,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:38,974 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-23 00:59:38,981 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:38,985 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9'
2024-05-23 00:59:38,991 [     scc.git] DEBUG Already up to date.
2024-05-23 00:59:39,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-05-23 00:59:39,388 [     scc.git] DEBUG Calling 'git submodule update'
2024-05-23 00:59:39,434 [     scc.git] DEBUG Get sha1 of %s
2024-05-23 00:59:39,434 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-05-23 00:59:39,439 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-05-23 00:59:39,482 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-05-23 00:59:39,494 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7febe4d1fac0> has no local changes
2024-05-23 00:59:39,494 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-insight
Excluded PRs:
  - PR 437 dominikl 'Remove apache commons io' (stage: draft)
  - PR 377 sukunis 'Fix ontology loads' (exclude comment)
  - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.

Merged PRs:
  - PR 333 jburel 'drop compatibility to test new Jenkins'
  - PR 385 jburel 'handle case where ROI is not longer in table'
  - PR 436 dominikl 'Update apache common libs'

Generated by OMERO-insight-push#68 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/68/)'
2024-05-23 00:59:39,509 [     scc.git] DEBUG [detached HEAD 36fbbcc1a] merge master -Dorg -Ssuccess-only
2024-05-23 00:59:39,509 [   scc.merge] INFO  Repository: ome/omero-insight
2024-05-23 00:59:39,509 [   scc.merge] INFO  Excluded PRs:
2024-05-23 00:59:39,509 [   scc.merge] INFO    - PR 437 dominikl 'Remove apache commons io' (stage: draft)
2024-05-23 00:59:39,509 [   scc.merge] INFO    - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2024-05-23 00:59:39,509 [   scc.merge] INFO    - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2024-05-23 00:59:39,509 [   scc.merge] INFO  Already up to date.
2024-05-23 00:59:39,509 [   scc.merge] INFO  
2024-05-23 00:59:39,510 [   scc.merge] INFO  Merged PRs:
2024-05-23 00:59:39,510 [   scc.merge] INFO    - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-05-23 00:59:39,510 [   scc.merge] INFO    - PR 385 jburel 'handle case where ROI is not longer in table'
2024-05-23 00:59:39,510 [   scc.merge] INFO    - PR 436 dominikl 'Update apache common libs'
2024-05-23 00:59:39,510 [   scc.merge] INFO  
2024-05-23 00:59:39,510 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-05-23 00:59:39,510 [     scc.git] DEBUG Calling 'git remote'
Update component versions
Updating omero-gateway from 5.9.1 to 5.9.2-SNAPSHOT
Commit all component version changes
[detached HEAD b31651293] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
2024-05-23 00:59:46,161 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-insight/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS