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Started by upstream project "Trigger" build number 109
originally caused by:
 Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-insight-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-insight-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
 > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-insight-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-insight.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-insight.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-insight.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision efbf7e35ce95c195c753051f26f92a075e8b5dd3 (refs/remotes/origin/master)
Commit message: "Bump version: 5.8.4 → 5.8.5-SNAPSHOT"
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10
 > git rev-list --no-walk efbf7e35ce95c195c753051f26f92a075e8b5dd3 # timeout=10
Cleaning workspace
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 98
[Pipeline] sh
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
+ pushd build
~/workspace/OMERO-insight-push/build ~/workspace/OMERO-insight-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-insight-push
+ python3 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-24.0
+ python3 -m pip install scc
Collecting scc
  Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
Collecting PyYAML>=5.1 (from scc)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
  Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
  Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
  Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
  Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
  Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.19.1-py3-none-any.whl (48 kB)
Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.6.2-py3-none-any.whl (164 kB)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl (3.9 MB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.8 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-insight.git
+ BASE_REPO=omero-insight.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-06-20 00:58:26,886 [  scc.config] DEBUG Found github.token
2024-06-20 00:58:26,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-06-20 00:58:27,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:27,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:27,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-06-20 00:58:27,940 [      scc.gh] DEBUG 2383 remaining from 5000 (Reset at 01:06
2024-06-20 00:58:27,942 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-06-20 00:58:27,948 [     scc.git] DEBUG Check current status
2024-06-20 00:58:27,948 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-06-20 00:58:27,952 [     scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-06-20 00:58:27,952 [     scc.git] DEBUG Calling 'git submodule status'
2024-06-20 00:58:27,995 [  scc.config] DEBUG Found remote.origin.url
2024-06-20 00:58:28,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2024-06-20 00:58:28,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-06-20 00:58:29,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-06-20 00:58:29,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-06-20 00:58:30,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-06-20 00:58:30,094 [     scc.git] DEBUG Resetting...
2024-06-20 00:58:30,094 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-06-20 00:58:30,112 [     scc.git] DEBUG HEAD is now at efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-06-20 00:58:30,113 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-06-20 00:58:30,156 [     scc.git] DEBUG Check current status
2024-06-20 00:58:30,157 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-06-20 00:58:30,162 [     scc.git] DEBUG efbf7e35c Bump version: 5.8.4 → 5.8.5-SNAPSHOT
2024-06-20 00:58:30,162 [     scc.git] DEBUG Calling 'git submodule status'
2024-06-20 00:58:30,216 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-06-20 00:58:30,217 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-06-20 00:58:30,217 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-06-20 00:58:30,217 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-06-20 00:58:30,217 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-06-20 00:58:30,217 [    scc.repo] DEBUG ## PRs found:
2024-06-20 00:58:30,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2024-06-20 00:58:31,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None
2024-06-20 00:58:31,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None
2024-06-20 00:58:32,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None
2024-06-20 00:58:32,060 [    scc.repo] DEBUG   - PR 436 dominikl 'Update apache common libs'
2024-06-20 00:58:32,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None
2024-06-20 00:58:32,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None
2024-06-20 00:58:32,957 [    scc.repo] DEBUG   - PR 385 jburel 'handle case where ROI is not longer in table'
2024-06-20 00:58:33,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None
2024-06-20 00:58:33,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None
2024-06-20 00:58:33,878 [    scc.repo] DEBUG   - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-06-20 00:58:34,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2024-06-20 00:58:34,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2024-06-20 00:58:34,854 [    scc.repo] DEBUG ## Branches found:
2024-06-20 00:58:34,854 [     scc.git] DEBUG Get sha1 of %s
2024-06-20 00:58:34,854 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:34,858 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-06-20 00:58:34,862 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-06-20 00:58:34,863 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-06-20 00:58:34,867 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-06-20 00:58:34,872 [     scc.git] DEBUG Already up to date.

2024-06-20 00:58:34,872 [     scc.git] DEBUG Calling 'git fetch origin pull/333/head'
2024-06-20 00:58:35,272 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-06-20 00:58:35,272 [     scc.git] DEBUG  * branch                refs/pull/333/head -> FETCH_HEAD
2024-06-20 00:58:35,277 [     scc.git] DEBUG Calling 'git fetch origin pull/385/head'
2024-06-20 00:58:35,810 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-06-20 00:58:35,810 [     scc.git] DEBUG  * branch                refs/pull/385/head -> FETCH_HEAD
2024-06-20 00:58:35,815 [     scc.git] DEBUG Calling 'git fetch origin pull/436/head'
2024-06-20 00:58:36,203 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-06-20 00:58:36,203 [     scc.git] DEBUG  * branch                refs/pull/436/head -> FETCH_HEAD
2024-06-20 00:58:36,208 [     scc.git] DEBUG ## Unique users: []
2024-06-20 00:58:36,208 [     scc.git] DEBUG Get sha1 of %s
2024-06-20 00:58:36,209 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:36,212 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-06-20 00:58:36,218 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:36,221 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-06-20 00:58:36,256 [     scc.git] DEBUG Auto-merging build.gradle
2024-06-20 00:58:36,259 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-06-20 00:58:36,262 [     scc.git] DEBUG  build.gradle | 8 ++++----
2024-06-20 00:58:36,262 [     scc.git] DEBUG  1 file changed, 4 insertions(+), 4 deletions(-)
2024-06-20 00:58:36,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:36,412 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215'
2024-06-20 00:58:36,419 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:36,423 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215'
2024-06-20 00:58:36,573 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-06-20 00:58:36,577 [     scc.git] DEBUG  .../shoola/agents/measurement/view/ServerROITable.java      | 13 ++++++++++---
2024-06-20 00:58:36,577 [     scc.git] DEBUG  1 file changed, 10 insertions(+), 3 deletions(-)
2024-06-20 00:58:36,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:36,823 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9'
2024-06-20 00:58:36,834 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:36,841 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9'
2024-06-20 00:58:36,895 [     scc.git] DEBUG Auto-merging build.gradle
2024-06-20 00:58:36,898 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-06-20 00:58:36,902 [     scc.git] DEBUG  build.gradle | 3 ++-
2024-06-20 00:58:36,902 [     scc.git] DEBUG  1 file changed, 2 insertions(+), 1 deletion(-)
2024-06-20 00:58:37,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:37,229 [     scc.git] DEBUG Calling 'git submodule update'
2024-06-20 00:58:37,273 [     scc.git] DEBUG Get sha1 of %s
2024-06-20 00:58:37,274 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:37,279 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-06-20 00:58:37,312 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa51506f2e0> has no local changes
2024-06-20 00:58:37,313 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-insight
Excluded PRs:
  - PR 437 dominikl 'Remove apache commons io' (stage: draft)
  - PR 377 sukunis 'Fix ontology loads' (exclude comment)
  - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.

Merged PRs:
  - PR 333 jburel 'drop compatibility to test new Jenkins'
  - PR 385 jburel 'handle case where ROI is not longer in table'
  - PR 436 dominikl 'Update apache common libs'

Generated by OMERO-insight-push#93 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/93/)'
2024-06-20 00:58:37,325 [     scc.git] DEBUG [detached HEAD 0722fa247] merge master -Dorg -Snone
2024-06-20 00:58:37,325 [   scc.merge] INFO  Repository: ome/omero-insight
2024-06-20 00:58:37,326 [   scc.merge] INFO  Excluded PRs:
2024-06-20 00:58:37,326 [   scc.merge] INFO    - PR 437 dominikl 'Remove apache commons io' (stage: draft)
2024-06-20 00:58:37,326 [   scc.merge] INFO    - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2024-06-20 00:58:37,326 [   scc.merge] INFO    - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2024-06-20 00:58:37,326 [   scc.merge] INFO  Already up to date.
2024-06-20 00:58:37,326 [   scc.merge] INFO  
2024-06-20 00:58:37,326 [   scc.merge] INFO  Merged PRs:
2024-06-20 00:58:37,326 [   scc.merge] INFO    - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-06-20 00:58:37,326 [   scc.merge] INFO    - PR 385 jburel 'handle case where ROI is not longer in table'
2024-06-20 00:58:37,326 [   scc.merge] INFO    - PR 436 dominikl 'Update apache common libs'
2024-06-20 00:58:37,326 [   scc.merge] INFO  
2024-06-20 00:58:37,326 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-06-20 00:58:37,326 [     scc.git] DEBUG Calling 'git remote'
Merge all submodules2024-06-20 00:58:37,778 [  scc.config] DEBUG Found github.token
2024-06-20 00:58:37,781 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-06-20 00:58:37,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:38,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:38,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-06-20 00:58:38,799 [      scc.gh] DEBUG 2340 remaining from 5000 (Reset at 01:06
2024-06-20 00:58:38,800 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-06-20 00:58:38,806 [     scc.git] DEBUG Check current status
2024-06-20 00:58:38,806 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-06-20 00:58:38,811 [     scc.git] DEBUG 0722fa247 merge master -Dorg -Snone
2024-06-20 00:58:38,811 [     scc.git] DEBUG Calling 'git submodule status'
2024-06-20 00:58:38,864 [  scc.config] DEBUG Found remote.origin.url
2024-06-20 00:58:39,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2024-06-20 00:58:39,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-06-20 00:58:40,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-06-20 00:58:40,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-06-20 00:58:41,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-06-20 00:58:41,016 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-06-20 00:58:41,065 [     scc.git] DEBUG Resetting...
2024-06-20 00:58:41,065 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-06-20 00:58:41,084 [     scc.git] DEBUG HEAD is now at 0722fa247 merge master -Dorg -Snone
2024-06-20 00:58:41,085 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-06-20 00:58:41,128 [     scc.git] DEBUG Check current status
2024-06-20 00:58:41,128 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-06-20 00:58:41,134 [     scc.git] DEBUG 0722fa247 merge master -Dorg -Snone
2024-06-20 00:58:41,134 [     scc.git] DEBUG Calling 'git submodule status'
2024-06-20 00:58:41,173 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-06-20 00:58:41,174 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-06-20 00:58:41,174 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-06-20 00:58:41,174 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-06-20 00:58:41,174 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-06-20 00:58:41,174 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-06-20 00:58:41,174 [    scc.repo] DEBUG ## PRs found:
2024-06-20 00:58:41,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2024-06-20 00:58:42,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/437 HTTP/1.1" 200 None
2024-06-20 00:58:42,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436 HTTP/1.1" 200 None
2024-06-20 00:58:42,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/436/comments HTTP/1.1" 200 None
2024-06-20 00:58:43,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-06-20 00:58:43,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-06-20 00:58:44,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-06-20 00:58:44,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-06-20 00:58:45,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/e43ef9b64e4734d327b92745588603a350b420c9?per_page=1 HTTP/1.1" 200 None
2024-06-20 00:58:45,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9 HTTP/1.1" 200 None
2024-06-20 00:58:46,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/e43ef9b64e4734d327b92745588603a350b420c9/status HTTP/1.1" 200 None
2024-06-20 00:58:46,373 [    scc.repo] DEBUG   - PR 436 dominikl 'Update apache common libs'
2024-06-20 00:58:46,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385 HTTP/1.1" 200 None
2024-06-20 00:58:47,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/385/comments HTTP/1.1" 200 None
2024-06-20 00:58:47,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-06-20 00:58:48,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-06-20 00:58:48,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-06-20 00:58:49,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-06-20 00:58:49,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/9466472925265b0b02b7c054c55d62705a9b8215?per_page=1 HTTP/1.1" 200 None
2024-06-20 00:58:50,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215 HTTP/1.1" 200 None
2024-06-20 00:58:50,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/9466472925265b0b02b7c054c55d62705a9b8215/status HTTP/1.1" 200 None
2024-06-20 00:58:50,612 [    scc.repo] DEBUG   - PR 385 jburel 'handle case where ROI is not longer in table'
2024-06-20 00:58:51,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333 HTTP/1.1" 200 None
2024-06-20 00:58:51,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/333/comments HTTP/1.1" 200 None
2024-06-20 00:58:52,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None
2024-06-20 00:58:52,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-06-20 00:58:52,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/b66e93349e2ddb5c1908f922c7c63a46722bd48e HTTP/1.1" 200 None
2024-06-20 00:58:53,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/b66e93349e2ddb5c1908f922c7c63a46722bd48e?per_page=1 HTTP/1.1" 200 2
2024-06-20 00:58:53,413 [    scc.repo] DEBUG   - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-06-20 00:58:53,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2024-06-20 00:58:54,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2024-06-20 00:58:54,407 [    scc.repo] DEBUG ## Branches found:
2024-06-20 00:58:54,407 [     scc.git] DEBUG Get sha1 of %s
2024-06-20 00:58:54,407 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:54,412 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-06-20 00:58:54,417 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-06-20 00:58:54,417 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-06-20 00:58:54,422 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-06-20 00:58:54,429 [     scc.git] DEBUG Already up to date.

2024-06-20 00:58:54,429 [     scc.git] DEBUG Calling 'git fetch origin pull/333/head'
2024-06-20 00:58:54,796 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-06-20 00:58:54,797 [     scc.git] DEBUG  * branch                refs/pull/333/head -> FETCH_HEAD
2024-06-20 00:58:54,802 [     scc.git] DEBUG Calling 'git fetch origin pull/385/head'
2024-06-20 00:58:55,178 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-06-20 00:58:55,179 [     scc.git] DEBUG  * branch                refs/pull/385/head -> FETCH_HEAD
2024-06-20 00:58:55,186 [     scc.git] DEBUG Calling 'git fetch origin pull/436/head'
2024-06-20 00:58:55,550 [     scc.git] DEBUG From https://github.com/ome/omero-insight
2024-06-20 00:58:55,550 [     scc.git] DEBUG  * branch                refs/pull/436/head -> FETCH_HEAD
2024-06-20 00:58:55,556 [     scc.git] DEBUG ## Unique users: []
2024-06-20 00:58:55,556 [     scc.git] DEBUG Get sha1 of %s
2024-06-20 00:58:55,556 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:55,561 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-06-20 00:58:55,568 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:55,573 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 333 (drop compatibility to test new Jenkins) b66e93349e2ddb5c1908f922c7c63a46722bd48e'
2024-06-20 00:58:55,581 [     scc.git] DEBUG Already up to date.
2024-06-20 00:58:55,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:55,740 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9466472925265b0b02b7c054c55d62705a9b8215'
2024-06-20 00:58:55,747 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:55,752 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 385 (handle case where ROI is not longer in table) 9466472925265b0b02b7c054c55d62705a9b8215'
2024-06-20 00:58:55,759 [     scc.git] DEBUG Already up to date.
2024-06-20 00:58:56,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:56,146 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...e43ef9b64e4734d327b92745588603a350b420c9'
2024-06-20 00:58:56,153 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:56,158 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 436 (Update apache common libs) e43ef9b64e4734d327b92745588603a350b420c9'
2024-06-20 00:58:56,165 [     scc.git] DEBUG Already up to date.
2024-06-20 00:58:56,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-06-20 00:58:56,552 [     scc.git] DEBUG Calling 'git submodule update'
2024-06-20 00:58:56,594 [     scc.git] DEBUG Get sha1 of %s
2024-06-20 00:58:56,594 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-06-20 00:58:56,600 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-06-20 00:58:56,641 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-06-20 00:58:56,653 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f45b98c42e0> has no local changes
2024-06-20 00:58:56,654 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-insight
Excluded PRs:
  - PR 437 dominikl 'Remove apache commons io' (stage: draft)
  - PR 377 sukunis 'Fix ontology loads' (exclude comment)
  - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.

Merged PRs:
  - PR 333 jburel 'drop compatibility to test new Jenkins'
  - PR 385 jburel 'handle case where ROI is not longer in table'
  - PR 436 dominikl 'Update apache common libs'

Generated by OMERO-insight-push#93 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-insight-push/93/)'
2024-06-20 00:58:56,667 [     scc.git] DEBUG [detached HEAD 58e65c32c] merge master -Dorg -Ssuccess-only
2024-06-20 00:58:56,667 [   scc.merge] INFO  Repository: ome/omero-insight
2024-06-20 00:58:56,667 [   scc.merge] INFO  Excluded PRs:
2024-06-20 00:58:56,667 [   scc.merge] INFO    - PR 437 dominikl 'Remove apache commons io' (stage: draft)
2024-06-20 00:58:56,667 [   scc.merge] INFO    - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2024-06-20 00:58:56,667 [   scc.merge] INFO    - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2024-06-20 00:58:56,667 [   scc.merge] INFO  Already up to date.
2024-06-20 00:58:56,667 [   scc.merge] INFO  
2024-06-20 00:58:56,668 [   scc.merge] INFO  Merged PRs:
2024-06-20 00:58:56,668 [   scc.merge] INFO    - PR 333 jburel 'drop compatibility to test new Jenkins'
2024-06-20 00:58:56,668 [   scc.merge] INFO    - PR 385 jburel 'handle case where ROI is not longer in table'
2024-06-20 00:58:56,668 [   scc.merge] INFO    - PR 436 dominikl 'Update apache common libs'
2024-06-20 00:58:56,668 [   scc.merge] INFO  
2024-06-20 00:58:56,668 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-06-20 00:58:56,668 [     scc.git] DEBUG Calling 'git remote'
Update component versions
Updating omero-gateway from 5.9.1 to 5.9.2-SNAPSHOT
Commit all component version changes
[detached HEAD 41741fc5a] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
2024-06-20 00:59:03,339 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-insight/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS