Console Output
Skipping 180 KB..
Full Logc working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:07:48,748 [ scc.git] DEBUG [detached HEAD 3dfb767] merge master -Dorg -Ssuccess-only
2025-12-17 21:07:48,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:07:48,748 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:07:49,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-12-17 21:07:49,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2025-12-17 21:07:50,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2025-12-17 21:07:50,263 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:07:51,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-17 21:07:51,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:07:52,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:07:52,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-17 21:07:53,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:07:53,015 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:07:53,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-12-17 21:07:54,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-17 21:07:54,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:07:55,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-17 21:07:55,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:07:55,621 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:07:56,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-12-17 21:07:56,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-12-17 21:07:57,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-17 21:07:57,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:07:58,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-17 21:07:58,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:07:58,549 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-12-17 21:07:58,549 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:07:58,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-17 21:07:58,549 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:07:58,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:07:58,552 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:07:58,554 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:07:58,554 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:07:58,557 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:07:58,560 [ scc.git] DEBUG Already up to date.
2025-12-17 21:07:58,560 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-12-17 21:07:58,979 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-17 21:07:58,979 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-12-17 21:07:58,981 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-12-17 21:07:59,372 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-17 21:07:59,372 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-12-17 21:07:59,374 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2025-12-17 21:07:59,624 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-17 21:07:59,624 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2025-12-17 21:07:59,628 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:07:59,629 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:07:59,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:07:59,631 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-17 21:07:59,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:07:59,636 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-17 21:07:59,644 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:07:59,647 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-12-17 21:07:59,647 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-12-17 21:07:59,647 [ scc.git] DEBUG requirements.txt | 2 +-
2025-12-17 21:07:59,647 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-12-17 21:07:59,647 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-12-17 21:07:59,647 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-12-17 21:07:59,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:07:59,795 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-17 21:07:59,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:07:59,800 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-17 21:07:59,807 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:07:59,810 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:07:59,810 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:08:00,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:00,205 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-17 21:08:00,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:00,211 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-17 21:08:00,218 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2025-12-17 21:08:00,218 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2025-12-17 21:08:00,218 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-17 21:08:00,218 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-17 21:08:00,221 [ scc.git] DEBUG Calling 'git reset --hard b812d6b622151422fc19d9af195a6d379b65d44c'
2025-12-17 21:08:00,224 [ scc.git] DEBUG HEAD is now at b812d6b merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2025-12-17 21:08:00,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:00,604 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-17 21:08:00,606 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2025-12-17 21:08:00,608 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#1](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2025-12-17 21:08:00,610 [ scc.config] DEBUG Found github.token
2025-12-17 21:08:00,610 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2025-12-17 21:08:00,610 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:00,646 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:00,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:00,648 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:00,684 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:00,688 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57c1faf10> has no local changes
2025-12-17 21:08:00,688 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:00,694 [ scc.git] DEBUG [detached HEAD 10b33db] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:00,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:00,694 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:01,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-12-17 21:08:01,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-12-17 21:08:02,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-12-17 21:08:02,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-17 21:08:03,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:03,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-17 21:08:04,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:04,131 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-17 21:08:04,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-12-17 21:08:05,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-12-17 21:08:05,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-17 21:08:06,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:06,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-17 21:08:07,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:07,106 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-17 21:08:07,106 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:07,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-17 21:08:07,106 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:07,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:07,109 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:07,111 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:07,111 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:07,114 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:07,120 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-12-17 21:08:07,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-12-17 21:08:07,816 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-12-17 21:08:08,332 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-17 21:08:08,332 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-12-17 21:08:08,335 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-12-17 21:08:08,778 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-17 21:08:08,778 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-12-17 21:08:08,781 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:08,781 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:08,781 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:08,783 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-17 21:08:08,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:08,789 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-17 21:08:08,803 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-12-17 21:08:08,803 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-12-17 21:08:08,803 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-17 21:08:08,803 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-17 21:08:08,803 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-17 21:08:08,804 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-17 21:08:08,806 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-17 21:08:08,810 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-17 21:08:08,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:08,995 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-17 21:08:08,999 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-17 21:08:09,002 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#1](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-12-17 21:08:09,004 [ scc.config] DEBUG Found github.token
2025-12-17 21:08:09,004 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-12-17 21:08:09,004 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-17 21:08:09,008 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:09,010 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-17 21:08:09,025 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-17 21:08:09,025 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-17 21:08:09,025 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-12-17 21:08:09,025 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-17 21:08:09,025 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-17 21:08:09,028 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-17 21:08:09,032 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-17 21:08:09,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:09,397 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-17 21:08:09,401 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-17 21:08:09,403 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#1](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-12-17 21:08:09,405 [ scc.config] DEBUG Found github.token
2025-12-17 21:08:09,405 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-12-17 21:08:09,405 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:09,441 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:09,441 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:09,443 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:09,477 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:09,480 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57c1fac10> has no local changes
2025-12-17 21:08:09,480 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:09,486 [ scc.git] DEBUG [detached HEAD 5536055] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:09,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:09,487 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:10,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-12-17 21:08:10,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-12-17 21:08:11,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-17 21:08:11,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:12,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:12,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-17 21:08:12,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:12,963 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:08:13,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-12-17 21:08:13,705 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:14,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-17 21:08:14,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:15,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:15,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-17 21:08:16,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:16,363 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-17 21:08:16,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-12-17 21:08:16,869 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:17,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-17 21:08:17,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:18,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:19,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-17 21:08:19,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:19,439 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-17 21:08:19,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-12-17 21:08:20,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-12-17 21:08:20,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-12-17 21:08:21,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-12-17 21:08:21,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-12-17 21:08:22,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-12-17 21:08:22,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-12-17 21:08:22,804 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:22,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-17 21:08:22,804 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:22,804 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:22,807 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:22,809 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:22,809 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:22,811 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:22,814 [ scc.git] DEBUG Already up to date.
2025-12-17 21:08:22,814 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-12-17 21:08:23,094 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-17 21:08:23,094 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-12-17 21:08:23,098 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-12-17 21:08:23,354 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-17 21:08:23,354 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-12-17 21:08:23,358 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-12-17 21:08:23,742 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-17 21:08:23,742 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-12-17 21:08:23,745 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:23,745 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:23,745 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:23,748 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-17 21:08:23,750 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:23,752 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-17 21:08:23,759 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:23,762 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-12-17 21:08:23,762 [ scc.git] DEBUG package.json | 2 +-
2025-12-17 21:08:23,762 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-12-17 21:08:23,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:23,932 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-12-17 21:08:23,934 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:23,936 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-12-17 21:08:23,946 [ scc.git] DEBUG Auto-merging package-lock.json
2025-12-17 21:08:23,946 [ scc.git] DEBUG Auto-merging package.json
2025-12-17 21:08:23,947 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:23,949 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-12-17 21:08:23,950 [ scc.git] DEBUG package.json | 2 +-
2025-12-17 21:08:23,950 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-12-17 21:08:24,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:24,323 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-17 21:08:24,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:24,328 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-17 21:08:24,336 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:24,338 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:08:24,338 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:08:24,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:24,710 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:24,746 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:24,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:24,748 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:24,783 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:24,786 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b114f10> has no local changes
2025-12-17 21:08:24,787 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:24,792 [ scc.git] DEBUG [detached HEAD c615ba8] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:24,793 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:24,793 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:25,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-12-17 21:08:25,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-12-17 21:08:25,916 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:26,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-17 21:08:27,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:27,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:27,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-17 21:08:28,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:28,400 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:08:28,400 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:28,400 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-17 21:08:28,401 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:28,401 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:28,403 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:28,406 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:28,406 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:28,408 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:28,411 [ scc.git] DEBUG Already up to date.
2025-12-17 21:08:28,411 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-12-17 21:08:28,676 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-12-17 21:08:28,676 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-12-17 21:08:28,680 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:28,680 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:28,680 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:28,682 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-17 21:08:28,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:28,687 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-17 21:08:28,693 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:28,696 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:08:28,696 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:08:28,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:28,847 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:28,883 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:28,883 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:28,885 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:28,920 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:28,923 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b0b5890> has no local changes
2025-12-17 21:08:28,923 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:28,928 [ scc.git] DEBUG [detached HEAD 7065aa6] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:28,928 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:28,928 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:29,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-12-17 21:08:29,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-12-17 21:08:29,903 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:30,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-17 21:08:30,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:31,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:31,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-17 21:08:32,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:32,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-17 21:08:33,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-12-17 21:08:33,310 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:08:33,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-12-17 21:08:34,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-12-17 21:08:34,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-17 21:08:35,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:36,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:36,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-17 21:08:36,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:37,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-17 21:08:37,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-12-17 21:08:37,866 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-12-17 21:08:38,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-12-17 21:08:38,395 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:38,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-17 21:08:38,395 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:38,395 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:38,397 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:38,400 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:38,400 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:38,402 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:38,405 [ scc.git] DEBUG Already up to date.
2025-12-17 21:08:38,405 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-12-17 21:08:38,805 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-17 21:08:38,805 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-12-17 21:08:38,808 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-12-17 21:08:39,066 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-17 21:08:39,066 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-12-17 21:08:39,070 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:39,070 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:39,070 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:39,072 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-17 21:08:39,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:39,077 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-17 21:08:39,084 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:39,087 [ scc.git] DEBUG setup.py | 4 +-
2025-12-17 21:08:39,087 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-12-17 21:08:39,087 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-12-17 21:08:39,087 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-12-17 21:08:39,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:39,235 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-12-17 21:08:39,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:39,240 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-12-17 21:08:39,246 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:39,249 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:08:39,249 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:08:39,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:39,643 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:39,679 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:39,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:39,681 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:39,716 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:39,719 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b10a210> has no local changes
2025-12-17 21:08:39,719 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:39,725 [ scc.git] DEBUG [detached HEAD f85599f] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:39,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:39,725 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:40,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-12-17 21:08:40,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-12-17 21:08:40,756 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:41,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-17 21:08:41,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:42,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:42,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-17 21:08:43,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:43,392 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:08:43,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-12-17 21:08:44,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-12-17 21:08:44,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-17 21:08:45,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:45,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-17 21:08:46,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:46,358 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-17 21:08:46,358 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:46,358 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-17 21:08:46,358 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:46,358 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:46,361 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:46,363 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:46,363 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:46,366 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:46,369 [ scc.git] DEBUG Already up to date.
2025-12-17 21:08:46,369 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-17 21:08:46,782 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-17 21:08:46,782 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-17 21:08:46,784 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-17 21:08:47,046 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-17 21:08:47,046 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-17 21:08:47,050 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:47,050 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:47,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:47,052 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-17 21:08:47,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:47,056 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-17 21:08:47,065 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-12-17 21:08:47,065 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-12-17 21:08:47,065 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-12-17 21:08:47,065 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-12-17 21:08:47,065 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-12-17 21:08:47,066 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-12-17 21:08:47,066 [ scc.git] DEBUG Auto-merging setup.py
2025-12-17 21:08:47,066 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-12-17 21:08:47,066 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-17 21:08:47,066 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-17 21:08:47,068 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-17 21:08:47,072 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-12-17 21:08:47,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:47,224 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-17 21:08:47,227 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-17 21:08:47,230 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#1](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
- omero_signup/signup_settings.py
--conflicts
2025-12-17 21:08:47,232 [ scc.config] DEBUG Found github.token
2025-12-17 21:08:47,232 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-12-17 21:08:47,232 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-17 21:08:47,234 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:47,236 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-17 21:08:47,242 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:47,245 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:08:47,245 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:08:47,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:47,626 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:47,662 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:47,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:47,664 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:47,699 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:47,702 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b0bb610> has no local changes
2025-12-17 21:08:47,702 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:47,708 [ scc.git] DEBUG [detached HEAD 03bf964] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:47,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:47,708 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:48,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-12-17 21:08:48,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-12-17 21:08:49,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-12-17 21:08:49,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2025-12-17 21:08:50,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-12-17 21:08:50,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:51,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:51,136 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:51,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-17 21:08:51,136 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:51,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:51,138 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:51,141 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:51,141 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:51,143 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:51,150 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2025-12-17 21:08:51,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2025-12-17 21:08:52,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2025-12-17 21:08:53,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2025-12-17 21:08:53,264 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:53,264 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:53,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:53,266 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:53,302 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:53,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:53,304 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:53,339 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:53,342 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57c2f2a90> has no local changes
2025-12-17 21:08:53,342 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:53,348 [ scc.git] DEBUG [detached HEAD d43aff3] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:53,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:53,348 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:53,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-12-17 21:08:54,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-12-17 21:08:54,309 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:54,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-17 21:08:55,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:08:55,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:08:56,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-17 21:08:56,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:08:56,927 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:08:56,927 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:08:56,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-17 21:08:56,928 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:56,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:56,930 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:08:56,932 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:08:56,932 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:08:56,935 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:08:56,938 [ scc.git] DEBUG Already up to date.
2025-12-17 21:08:56,938 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-17 21:08:57,221 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-12-17 21:08:57,221 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-17 21:08:57,225 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:08:57,225 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:57,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:57,227 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-17 21:08:57,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:57,232 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-17 21:08:57,238 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:08:57,240 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:08:57,240 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:08:57,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:08:57,408 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:08:57,443 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:08:57,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:08:57,446 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:08:57,481 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:08:57,484 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b16dc90> has no local changes
2025-12-17 21:08:57,484 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:08:57,490 [ scc.git] DEBUG [detached HEAD 22bee72] merge master -Dorg -Ssuccess-only
2025-12-17 21:08:57,490 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:08:57,490 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:08:57,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-12-17 21:08:58,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-12-17 21:08:58,420 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:08:59,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-17 21:08:59,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:09:00,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:09:00,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-17 21:09:01,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:09:01,149 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:01,149 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:09:01,149 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-17 21:09:01,149 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:01,149 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:01,152 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:09:01,154 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:09:01,154 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:09:01,157 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:09:01,164 [ scc.git] DEBUG Updating deab817..160d894
2025-12-17 21:09:01,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-12-17 21:09:01,979 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-17 21:09:02,256 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-12-17 21:09:02,257 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-17 21:09:02,260 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:09:02,260 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:02,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:02,262 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-17 21:09:02,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:02,267 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-17 21:09:02,273 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:09:02,276 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:09:02,276 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:09:02,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:02,425 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:09:02,462 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:02,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:02,464 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:02,499 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:02,502 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b0fae50> has no local changes
2025-12-17 21:09:02,502 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:02,508 [ scc.git] DEBUG [detached HEAD 0a03fe7] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:02,508 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:02,508 [ scc.git] INFO Overriding base-branch from master to main
2025-12-17 21:09:02,508 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:09:02,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-12-17 21:09:03,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-12-17 21:09:03,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-12-17 21:09:04,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-17 21:09:05,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:09:05,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:09:06,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-17 21:09:06,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:09:06,444 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-12-17 21:09:06,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-12-17 21:09:07,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-12-17 21:09:07,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-12-17 21:09:08,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-17 21:09:09,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:09:09,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-17 21:09:09,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:09:09,961 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-17 21:09:09,961 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:09:09,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-17 21:09:09,961 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:09,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:09,964 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-12-17 21:09:09,966 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:09:09,966 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-12-17 21:09:09,969 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-12-17 21:09:09,976 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2025-12-17 21:09:10,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2025-12-17 21:09:11,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-12-17 21:09:11,416 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-12-17 21:09:11,837 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-17 21:09:11,838 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-12-17 21:09:11,840 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-12-17 21:09:12,248 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-17 21:09:12,248 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-12-17 21:09:12,250 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:09:12,250 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:12,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:12,253 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-17 21:09:12,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:12,257 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-17 21:09:12,265 [ scc.git] DEBUG Auto-merging README.rst
2025-12-17 21:09:12,265 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-12-17 21:09:12,265 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-12-17 21:09:12,265 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-17 21:09:12,266 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-17 21:09:12,266 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-17 21:09:12,268 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-17 21:09:12,271 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2025-12-17 21:09:12,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:12,424 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-17 21:09:12,427 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-17 21:09:12,429 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#1](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-12-17 21:09:12,431 [ scc.config] DEBUG Found github.token
2025-12-17 21:09:12,432 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-12-17 21:09:12,432 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-17 21:09:12,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:12,436 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-17 21:09:12,445 [ scc.git] DEBUG Auto-merging README.rst
2025-12-17 21:09:12,445 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-17 21:09:12,446 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:09:12,449 [ scc.git] DEBUG README.rst | 3 +
2025-12-17 21:09:12,449 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-12-17 21:09:12,449 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-12-17 21:09:12,449 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-12-17 21:09:12,449 [ scc.git] DEBUG setup.py | 5 +-
2025-12-17 21:09:12,449 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-12-17 21:09:12,449 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-12-17 21:09:12,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:12,830 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:09:12,865 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:12,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:12,867 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:12,903 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:12,906 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b122610> has no local changes
2025-12-17 21:09:12,906 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:12,912 [ scc.git] DEBUG [detached HEAD f522bdd] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:12,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:12,913 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:09:13,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-12-17 21:09:13,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-12-17 21:09:13,840 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:09:14,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-17 21:09:14,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:09:15,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:09:16,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-17 21:09:16,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:09:16,501 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:16,501 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:09:16,501 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-17 21:09:16,501 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:16,501 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:16,504 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:09:16,506 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:09:16,506 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:09:16,509 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:09:16,512 [ scc.git] DEBUG Already up to date.
2025-12-17 21:09:16,512 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-12-17 21:09:16,779 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-12-17 21:09:16,779 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-12-17 21:09:16,783 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:09:16,783 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:16,783 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:16,785 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-17 21:09:16,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:16,789 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-17 21:09:16,795 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:09:16,798 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:09:16,798 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:09:16,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:16,967 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:09:17,002 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:17,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:17,004 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:17,038 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:17,041 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b157410> has no local changes
2025-12-17 21:09:17,041 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:17,047 [ scc.git] DEBUG [detached HEAD d3517f6] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:17,047 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:17,047 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:09:17,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-12-17 21:09:17,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-12-17 21:09:17,987 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-17 21:09:18,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-17 21:09:19,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:09:19,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:09:20,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-17 21:09:20,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:09:20,561 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:20,561 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:09:20,561 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-17 21:09:20,562 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:20,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:20,564 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:09:20,566 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:09:20,566 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:09:20,569 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:09:20,571 [ scc.git] DEBUG Already up to date.
2025-12-17 21:09:20,571 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-12-17 21:09:20,860 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-12-17 21:09:20,860 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-12-17 21:09:20,864 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:09:20,864 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:20,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:20,866 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-17 21:09:20,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:20,871 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-17 21:09:20,877 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:09:20,880 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-17 21:09:20,880 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-17 21:09:21,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:21,026 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:09:21,062 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:21,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:21,064 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:21,098 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:21,101 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57b13a350> has no local changes
2025-12-17 21:09:21,101 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:21,107 [ scc.git] DEBUG [detached HEAD ab19c93] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:21,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:21,107 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:09:21,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2025-12-17 21:09:21,499 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:09:21,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-17 21:09:21,499 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:21,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:21,501 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-17 21:09:21,503 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:09:21,503 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-17 21:09:21,505 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-17 21:09:21,508 [ scc.git] DEBUG Already up to date.
2025-12-17 21:09:21,508 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:09:21,508 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:21,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:21,510 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:09:21,545 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:21,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:21,547 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:21,582 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:21,585 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa570709bd0> has no local changes
2025-12-17 21:09:21,585 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:21,590 [ scc.git] DEBUG [detached HEAD 5723ea4] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:21,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:21,591 [ scc.git] INFO Overriding base-branch from master to develop
2025-12-17 21:09:21,591 [ scc.repo] DEBUG ## PRs found:
2025-12-17 21:09:22,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-12-17 21:09:22,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None
2025-12-17 21:09:23,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-17 21:09:23,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-17 21:09:23,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-17 21:09:24,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-17 21:09:24,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2
2025-12-17 21:09:24,812 [ scc.repo] DEBUG - PR 231 jburel 'Create Release '
2025-12-17 21:09:25,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-12-17 21:09:25,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-12-17 21:09:25,803 [ scc.repo] DEBUG ## Branches found:
2025-12-17 21:09:25,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-17 21:09:25,803 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:25,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:25,806 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-12-17 21:09:25,808 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-17 21:09:25,808 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-12-17 21:09:25,811 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-12-17 21:09:25,822 [ scc.git] DEBUG Updating 4b4c755..18a9a75
2025-12-17 21:09:26,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2025-12-17 21:09:27,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2025-12-17 21:09:27,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2025-12-17 21:09:28,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-12-17 21:09:29,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-12-17 21:09:30,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-12-17 21:09:30,090 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head'
2025-12-17 21:09:30,496 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-12-17 21:09:30,496 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD
2025-12-17 21:09:30,499 [ scc.git] DEBUG ## Unique users: []
2025-12-17 21:09:30,499 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:30,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:30,501 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-17 21:09:30,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:30,506 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-17 21:09:30,513 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-17 21:09:30,516 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++----
2025-12-17 21:09:30,516 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-)
2025-12-17 21:09:30,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:30,675 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-17 21:09:30,713 [ scc.git] DEBUG Get sha1 of %s
2025-12-17 21:09:30,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-17 21:09:30,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:30,749 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:30,752 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57c2f0810> has no local changes
2025-12-17 21:09:30,753 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:30,758 [ scc.git] DEBUG [detached HEAD 1c05dbd] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:30,759 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:30,759 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-17 21:09:30,825 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-12-17 21:09:31,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:31,081 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-12-17 21:09:31,083 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-12-17 21:09:31,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:31,471 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-12-17 21:09:31,472 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-12-17 21:09:31,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:31,890 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-12-17 21:09:31,892 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-12-17 21:09:32,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:32,297 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-12-17 21:09:32,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:32,711 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-12-17 21:09:32,713 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-12-17 21:09:33,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:33,098 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-12-17 21:09:33,100 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-12-17 21:09:33,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:33,491 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-12-17 21:09:33,493 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-12-17 21:09:33,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:33,899 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-12-17 21:09:33,901 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-12-17 21:09:34,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:34,298 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-12-17 21:09:34,300 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-12-17 21:09:34,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:34,687 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-12-17 21:09:34,689 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-12-17 21:09:35,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:35,090 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-12-17 21:09:35,092 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-12-17 21:09:35,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:35,498 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-12-17 21:09:35,500 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-12-17 21:09:35,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:35,893 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-12-17 21:09:36,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:36,301 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-12-17 21:09:36,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:36,712 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-12-17 21:09:36,714 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-12-17 21:09:37,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:37,121 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-12-17 21:09:37,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:37,523 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-12-17 21:09:37,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:37,927 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-12-17 21:09:37,929 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-12-17 21:09:38,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:38,334 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-12-17 21:09:38,336 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-12-17 21:09:38,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:38,741 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-12-17 21:09:38,742 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-12-17 21:09:39,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:39,155 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-12-17 21:09:39,157 [ scc.config] DEBUG Found submodule.scripts.url
2025-12-17 21:09:39,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-17 21:09:39,558 [ scc.config] DEBUG Found submodule.scripts.branch
2025-12-17 21:09:39,558 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-17 21:09:39,633 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa57e7a14d0> has local changes
2025-12-17 21:09:39,633 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..218f91f8
Previously merged:
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
Conflicting PRs (not included):
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#1 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/1/)'
2025-12-17 21:09:39,644 [ scc.git] DEBUG [detached HEAD cb79498] merge master -Dorg -Ssuccess-only
2025-12-17 21:09:39,644 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-12-17 21:09:39,644 [ scc.merge] INFO Repository: ome/omero-plugins
2025-12-17 21:09:39,645 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-12-17 21:09:39,645 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-12-17 21:09:39,645 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-12-17 21:09:39,645 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-12-17 21:09:39,645 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-12-17 21:09:39,645 [ scc.merge] INFO Updating ce6e13c..68b7303
2025-12-17 21:09:39,645 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-12-17 21:09:39,645 [ scc.merge] INFO
2025-12-17 21:09:39,645 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-12-17 21:09:39,645 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-12-17 21:09:39,645 [ scc.merge] INFO Updating 11d3587..37ea700
2025-12-17 21:09:39,645 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,645 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:09:39,646 [ scc.merge] INFO
2025-12-17 21:09:39,646 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2025-12-17 21:09:39,646 [ scc.merge] INFO
2025-12-17 21:09:39,646 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-12-17 21:09:39,646 [ scc.merge] INFO
2025-12-17 21:09:39,646 [ scc.merge] INFO Repository: ome/omero-figure
2025-12-17 21:09:39,646 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-12-17 21:09:39,646 [ scc.merge] INFO Updating 9cc36cde..218f91f8
2025-12-17 21:09:39,646 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:09:39,646 [ scc.merge] INFO
2025-12-17 21:09:39,646 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2025-12-17 21:09:39,646 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-12-17 21:09:39,647 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Repository: ome/omero-gallery
2025-12-17 21:09:39,647 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-12-17 21:09:39,647 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-12-17 21:09:39,647 [ scc.merge] INFO Updating 7a798ce..5e2de43
2025-12-17 21:09:39,647 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:09:39,647 [ scc.merge] INFO
2025-12-17 21:09:39,647 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2025-12-17 21:09:39,647 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Repository: ome/omero-mapr
2025-12-17 21:09:39,648 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-12-17 21:09:39,648 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Repository: ome/omero-metadata
2025-12-17 21:09:39,648 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-12-17 21:09:39,648 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Repository: ome/omero-parade
2025-12-17 21:09:39,648 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-12-17 21:09:39,648 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-12-17 21:09:39,648 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,648 [ scc.merge] INFO
2025-12-17 21:09:39,648 [ scc.merge] INFO Repository: ome/omero-rois
2025-12-17 21:09:39,648 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,648 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-17 21:09:39,649 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Repository: ome/omero-signup
2025-12-17 21:09:39,649 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-12-17 21:09:39,649 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-12-17 21:09:39,649 [ scc.merge] INFO Updating cda3ec6..c8a0015
2025-12-17 21:09:39,649 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Repository: ome/omero-upload
2025-12-17 21:09:39,649 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-12-17 21:09:39,649 [ scc.merge] INFO Updating deab817..160d894
2025-12-17 21:09:39,649 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,649 [ scc.merge] INFO
2025-12-17 21:09:39,649 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-12-17 21:09:39,649 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-12-17 21:09:39,649 [ scc.merge] INFO Updating 8f3c313..4e1e685
2025-12-17 21:09:39,649 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,649 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-12-17 21:09:39,650 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-12-17 21:09:39,650 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-12-17 21:09:39,650 [ scc.merge] INFO Already up to date.
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Repository: ome/scripts
2025-12-17 21:09:39,650 [ scc.merge] INFO Excluded PRs:
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-12-17 21:09:39,650 [ scc.merge] INFO Updating 4b4c755..18a9a75
2025-12-17 21:09:39,650 [ scc.merge] INFO Previously merged:
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] INFO Merged PRs:
2025-12-17 21:09:39,650 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2025-12-17 21:09:39,650 [ scc.merge] INFO
2025-12-17 21:09:39,650 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-17 21:09:39,650 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,652 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-12-17 21:09:39,652 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-12-17 21:09:39,655 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-12-17 21:09:39,657 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-12-17 21:09:39,659 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-12-17 21:09:39,661 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-12-17 21:09:39,663 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-12-17 21:09:39,665 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-12-17 21:09:39,667 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,669 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,669 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-17 21:09:39,669 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-17 21:09:39,671 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,673 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,673 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-17 21:09:39,673 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,675 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,675 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-17 21:09:39,675 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,677 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,677 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-17 21:09:39,677 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-17 21:09:39,679 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-17 21:09:39,681 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,683 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,683 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-17 21:09:39,683 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-17 21:09:39,685 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-17 21:09:39,687 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-17 21:09:39,689 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-17 21:09:39,691 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-17 21:09:39,693 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,695 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-17 21:09:39,695 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-17 21:09:39,695 [ scc.git] DEBUG Calling 'git remote'
2025-12-17 21:09:39,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 8dcb4ca] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD b31b890] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-12-17 21:10:27,358 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-12-17 21:10:36,964 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-12-17 21:10:39,513 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-17 21:10:44,495 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-17 21:11:27,240 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
