Console Output
Skipping 181 KB..
Full Log8ce..4ffc4ac
Previously merged:
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 517 will-moore 'Fix roi link permissions'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 09:59:43,919 [ scc.git] DEBUG [detached HEAD 6263af7] merge master -Dorg -Ssuccess-only
2026-04-04 09:59:43,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 09:59:43,920 [ scc.repo] DEBUG ## PRs found:
2026-04-04 09:59:44,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-04-04 09:59:44,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-04-04 09:59:45,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-04-04 09:59:45,387 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 09:59:45,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:46,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 09:59:47,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 09:59:48,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:48,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-04-04 09:59:48,489 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 09:59:48,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-04-04 09:59:49,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:49,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 09:59:50,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:50,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-04-04 09:59:50,820 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 09:59:51,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-04-04 09:59:51,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-04-04 09:59:52,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:52,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 09:59:53,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:53,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-04-04 09:59:53,835 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-04-04 09:59:53,835 [ scc.repo] DEBUG ## Branches found:
2026-04-04 09:59:53,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-04-04 09:59:53,836 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 09:59:53,836 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 09:59:53,838 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 09:59:53,840 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 09:59:53,840 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 09:59:53,843 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 09:59:53,846 [ scc.git] DEBUG Already up to date.
2026-04-04 09:59:53,846 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-04-04 09:59:54,243 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-04-04 09:59:54,244 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-04-04 09:59:54,248 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-04-04 09:59:54,611 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-04-04 09:59:54,611 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-04-04 09:59:54,615 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-04-04 09:59:54,984 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-04-04 09:59:54,984 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-04-04 09:59:54,988 [ scc.git] DEBUG ## Unique users: []
2026-04-04 09:59:54,988 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 09:59:54,988 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 09:59:54,991 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-04-04 09:59:54,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 09:59:54,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-04-04 09:59:55,004 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 09:59:55,008 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-04-04 09:59:55,008 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-04-04 09:59:55,008 [ scc.git] DEBUG requirements.txt | 2 +-
2026-04-04 09:59:55,008 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-04-04 09:59:55,008 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-04-04 09:59:55,008 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-04-04 09:59:55,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 09:59:55,187 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-04-04 09:59:55,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 09:59:55,192 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-04-04 09:59:55,199 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 09:59:55,202 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 09:59:55,202 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 09:59:55,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 09:59:55,611 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-04-04 09:59:55,614 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 09:59:55,616 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-04-04 09:59:55,624 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-04-04 09:59:55,624 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-04-04 09:59:55,624 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-04 09:59:55,624 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-04 09:59:55,627 [ scc.git] DEBUG Calling 'git reset --hard 3913d24c9227e860cf2988000a4af93bee385daa'
2026-04-04 09:59:55,631 [ scc.git] DEBUG HEAD is now at 3913d24 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-04-04 09:59:56,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 09:59:56,035 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-04-04 09:59:56,038 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-04-04 09:59:56,041 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#108](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-04-04 09:59:56,043 [ scc.config] DEBUG Found github.token
2026-04-04 09:59:56,043 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-04-04 09:59:56,043 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 09:59:56,083 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 09:59:56,083 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 09:59:56,085 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 09:59:56,122 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 09:59:56,126 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6d5f610> has no local changes
2026-04-04 09:59:56,126 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 09:59:56,132 [ scc.git] DEBUG [detached HEAD cebd507] merge master -Dorg -Ssuccess-only
2026-04-04 09:59:56,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 09:59:56,132 [ scc.repo] DEBUG ## PRs found:
2026-04-04 09:59:56,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-04-04 09:59:57,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-04-04 09:59:57,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-04-04 09:59:58,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:58,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 09:59:58,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-04-04 09:59:59,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-04-04 09:59:59,438 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-04-04 09:59:59,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-04-04 10:00:00,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-04-04 10:00:00,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:01,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:01,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:02,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:02,421 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-04-04 10:00:02,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-04-04 10:00:03,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-04-04 10:00:03,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:04,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:04,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:05,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:05,266 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-04-04 10:00:05,266 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:05,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-04-04 10:00:05,266 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:05,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:05,269 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:05,271 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:05,271 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:05,274 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:05,280 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-04-04 10:00:05,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-04-04 10:00:05,941 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-04-04 10:00:06,358 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-04-04 10:00:06,358 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-04-04 10:00:06,362 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-04-04 10:00:06,632 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-04-04 10:00:06,632 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-04-04 10:00:06,636 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-04-04 10:00:06,912 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-04-04 10:00:06,912 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-04-04 10:00:06,916 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:06,916 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:06,916 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:06,918 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-04-04 10:00:06,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:06,924 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-04-04 10:00:06,936 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-04-04 10:00:06,936 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-04-04 10:00:06,936 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-04-04 10:00:06,936 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-04-04 10:00:06,936 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-04 10:00:06,936 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-04 10:00:06,938 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-04 10:00:06,942 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-04-04 10:00:07,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:07,130 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-04-04 10:00:07,134 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-04 10:00:07,136 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#108](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-04-04 10:00:07,138 [ scc.config] DEBUG Found github.token
2026-04-04 10:00:07,138 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-04-04 10:00:07,138 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-04-04 10:00:07,142 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:07,144 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-04-04 10:00:07,157 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-04-04 10:00:07,157 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-04-04 10:00:07,157 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-04-04 10:00:07,157 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-04 10:00:07,158 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-04 10:00:07,160 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-04 10:00:07,165 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-04-04 10:00:07,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:07,585 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-04-04 10:00:07,588 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-04 10:00:07,591 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#108](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-04-04 10:00:07,593 [ scc.config] DEBUG Found github.token
2026-04-04 10:00:07,593 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-04-04 10:00:07,593 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-04-04 10:00:07,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:07,597 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-04-04 10:00:07,605 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:07,609 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-04-04 10:00:07,609 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-04-04 10:00:08,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:08,020 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:08,059 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:08,059 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:08,061 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:08,100 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:08,103 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e7f01cd0> has no local changes
2026-04-04 10:00:08,103 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:08,109 [ scc.git] DEBUG [detached HEAD 7158082] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:08,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:08,110 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:08,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-04-04 10:00:09,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-04-04 10:00:09,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:10,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:10,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:11,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:11,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:11,548 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:00:12,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-04-04 10:00:12,063 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:00:12,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:13,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:14,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:14,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:15,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:15,228 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-04-04 10:00:15,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-04-04 10:00:15,732 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:00:16,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:16,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:17,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:17,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:17,808 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-04-04 10:00:18,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-04-04 10:00:18,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-04-04 10:00:19,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-04-04 10:00:19,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-04-04 10:00:20,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-04-04 10:00:20,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-04-04 10:00:21,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-04-04 10:00:21,257 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:21,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-04-04 10:00:21,257 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:21,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:21,259 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:21,262 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:21,262 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:21,264 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:21,267 [ scc.git] DEBUG Already up to date.
2026-04-04 10:00:21,267 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-04-04 10:00:21,697 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-04-04 10:00:21,697 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-04-04 10:00:21,702 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-04-04 10:00:21,971 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-04-04 10:00:21,972 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-04-04 10:00:21,975 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-04-04 10:00:22,331 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-04-04 10:00:22,331 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-04-04 10:00:22,335 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:22,335 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:22,335 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:22,337 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-04-04 10:00:22,340 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:22,342 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-04-04 10:00:22,349 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:22,353 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-04-04 10:00:22,353 [ scc.git] DEBUG package.json | 2 +-
2026-04-04 10:00:22,353 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-04-04 10:00:22,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:22,533 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-04-04 10:00:22,536 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:22,538 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-04-04 10:00:22,547 [ scc.git] DEBUG Auto-merging package-lock.json
2026-04-04 10:00:22,547 [ scc.git] DEBUG Auto-merging package.json
2026-04-04 10:00:22,548 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:22,551 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-04-04 10:00:22,551 [ scc.git] DEBUG package.json | 2 +-
2026-04-04 10:00:22,551 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-04-04 10:00:22,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:22,960 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-04-04 10:00:22,963 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:22,965 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-04-04 10:00:22,972 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:22,975 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:00:22,975 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:00:23,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:23,388 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:23,426 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:23,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:23,429 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:23,467 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:23,471 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6d7c890> has no local changes
2026-04-04 10:00:23,471 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:23,476 [ scc.git] DEBUG [detached HEAD ac90fdd] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:23,477 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:23,477 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:23,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-04-04 10:00:24,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-04-04 10:00:24,435 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:00:25,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:25,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:26,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:27,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:27,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:27,540 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:00:27,540 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:27,540 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-04-04 10:00:27,541 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:27,541 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:27,543 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:27,545 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:27,545 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:27,548 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:27,551 [ scc.git] DEBUG Already up to date.
2026-04-04 10:00:27,551 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-04-04 10:00:27,849 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-04-04 10:00:27,849 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-04-04 10:00:27,853 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:27,853 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:27,853 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:27,855 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-04-04 10:00:27,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:27,860 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-04-04 10:00:27,866 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:27,869 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:00:27,869 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:00:28,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:28,043 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:28,080 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:28,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:28,082 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:28,119 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:28,122 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6d85910> has no local changes
2026-04-04 10:00:28,122 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:28,128 [ scc.git] DEBUG [detached HEAD 1b3c49d] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:28,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:28,128 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:28,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-04-04 10:00:29,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-04-04 10:00:29,191 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:29,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-04-04 10:00:29,191 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:29,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:29,194 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:29,196 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:29,196 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:29,198 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:29,206 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-04-04 10:00:29,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-04-04 10:00:30,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-04-04 10:00:30,491 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:30,491 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:30,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:30,494 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:30,531 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:30,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:30,533 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:30,570 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:30,573 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6d85590> has no local changes
2026-04-04 10:00:30,573 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:30,579 [ scc.git] DEBUG [detached HEAD a6bcc42] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:30,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:30,579 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:31,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-04-04 10:00:31,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-04-04 10:00:31,600 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:00:32,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:32,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:33,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:34,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:34,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:34,520 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:00:35,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-04-04 10:00:35,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-04-04 10:00:35,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:36,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:36,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:37,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:37,405 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-04-04 10:00:37,405 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:37,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-04-04 10:00:37,405 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:37,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:37,408 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:37,410 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:37,410 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:37,413 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:37,415 [ scc.git] DEBUG Already up to date.
2026-04-04 10:00:37,416 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-04-04 10:00:37,806 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-04-04 10:00:37,807 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-04-04 10:00:37,811 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-04-04 10:00:38,155 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-04-04 10:00:38,155 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-04-04 10:00:38,160 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:38,160 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:38,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:38,162 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-04-04 10:00:38,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:38,167 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-04-04 10:00:38,175 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG Auto-merging setup.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-04-04 10:00:38,175 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-04 10:00:38,175 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-04 10:00:38,178 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-04-04 10:00:38,182 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-04-04 10:00:38,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:38,357 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-04-04 10:00:38,360 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-04-04 10:00:38,362 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#108](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2026-04-04 10:00:38,364 [ scc.config] DEBUG Found github.token
2026-04-04 10:00:38,364 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-04-04 10:00:38,364 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-04-04 10:00:38,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:38,369 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-04-04 10:00:38,375 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:38,377 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:00:38,378 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:00:38,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:38,805 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:38,844 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:38,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:38,846 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:38,884 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:38,887 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6d44750> has no local changes
2026-04-04 10:00:38,887 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:38,893 [ scc.git] DEBUG [detached HEAD 83f42a5] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:38,893 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:38,893 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:39,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-04-04 10:00:39,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-04-04 10:00:40,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-04-04 10:00:40,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-04-04 10:00:41,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:42,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:42,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:43,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:43,029 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-04-04 10:00:43,029 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:43,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-04-04 10:00:43,029 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:43,029 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:43,032 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:43,034 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:43,034 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:43,037 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:43,044 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-04-04 10:00:43,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-04-04 10:00:44,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-04-04 10:00:45,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-04-04 10:00:45,049 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-04-04 10:00:45,337 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-04-04 10:00:45,337 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-04-04 10:00:45,341 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:45,341 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:45,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:45,343 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-04-04 10:00:45,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:45,349 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-04-04 10:00:45,356 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-04-04 10:00:45,356 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:45,359 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-04-04 10:00:45,359 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-04-04 10:00:45,359 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-04-04 10:00:45,359 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-04-04 10:00:45,359 [ scc.git] DEBUG ms/test | 2 ++
2026-04-04 10:00:45,359 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-04-04 10:00:45,359 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-04-04 10:00:45,359 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-04-04 10:00:45,360 [ scc.git] DEBUG create mode 100755 ms/test
2026-04-04 10:00:45,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:45,554 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:45,591 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:45,591 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:45,594 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:45,631 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:45,634 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6db6810> has no local changes
2026-04-04 10:00:45,634 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:45,640 [ scc.git] DEBUG [detached HEAD 2627afe] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:45,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:45,640 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:46,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-04-04 10:00:46,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-04-04 10:00:46,611 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:00:47,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:47,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:48,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:48,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:49,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:49,351 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:00:49,351 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:49,351 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-04-04 10:00:49,352 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:49,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:49,354 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:49,357 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:49,357 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:49,360 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:49,363 [ scc.git] DEBUG Already up to date.
2026-04-04 10:00:49,363 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-04-04 10:00:49,651 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-04-04 10:00:49,651 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-04-04 10:00:49,655 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:49,655 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:49,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:49,658 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-04-04 10:00:49,660 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:49,662 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-04-04 10:00:49,669 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:49,671 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:00:49,671 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:00:49,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:49,866 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:49,905 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:49,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:49,907 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:49,942 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:49,945 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6dbb350> has no local changes
2026-04-04 10:00:49,945 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:49,951 [ scc.git] DEBUG [detached HEAD ccb3b84] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:49,951 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:49,951 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:50,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-04-04 10:00:50,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-04-04 10:00:50,947 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:00:51,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:51,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:52,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:53,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:53,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:53,481 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:00:53,481 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:00:53,481 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-04-04 10:00:53,481 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:53,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:53,484 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:00:53,486 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:00:53,486 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:00:53,488 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:00:53,495 [ scc.git] DEBUG Updating deab817..160d894
2026-04-04 10:00:54,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-04-04 10:00:54,159 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-04-04 10:00:54,571 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-04-04 10:00:54,572 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-04-04 10:00:54,575 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:00:54,575 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:54,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:54,577 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-04-04 10:00:54,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:54,583 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-04-04 10:00:54,589 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:00:54,592 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:00:54,592 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:00:54,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:00:54,762 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:00:54,801 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:00:54,801 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:00:54,803 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:00:54,840 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:00:54,843 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6e06790> has no local changes
2026-04-04 10:00:54,843 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:00:54,849 [ scc.git] DEBUG [detached HEAD 9c0ebe5] merge master -Dorg -Ssuccess-only
2026-04-04 10:00:54,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:00:54,849 [ scc.git] INFO Overriding base-branch from master to main
2026-04-04 10:00:54,849 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:00:55,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-04-04 10:00:55,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-04-04 10:00:56,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-04-04 10:00:56,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:57,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:00:57,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:00:58,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-04-04 10:00:58,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:00:58,760 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-04-04 10:00:59,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-04-04 10:00:59,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-04-04 10:01:00,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-04-04 10:01:00,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-04-04 10:01:01,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:01:01,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-04-04 10:01:02,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:01:02,220 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-04-04 10:01:02,221 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:01:02,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-04-04 10:01:02,221 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:02,221 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:02,223 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-04-04 10:01:02,226 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:01:02,226 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-04-04 10:01:02,228 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-04-04 10:01:02,235 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-04-04 10:01:02,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-04-04 10:01:03,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-04-04 10:01:03,513 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-04-04 10:01:03,918 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-04-04 10:01:03,918 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-04-04 10:01:03,921 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-04-04 10:01:04,188 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-04-04 10:01:04,188 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-04-04 10:01:04,193 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:01:04,193 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:04,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:04,195 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-04-04 10:01:04,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:04,200 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-04-04 10:01:04,207 [ scc.git] DEBUG Auto-merging README.rst
2026-04-04 10:01:04,207 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-04-04 10:01:04,207 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-04-04 10:01:04,207 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-04-04 10:01:04,207 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-04 10:01:04,207 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-04 10:01:04,210 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-04-04 10:01:04,213 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-04-04 10:01:04,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:04,392 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-04-04 10:01:04,395 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-04-04 10:01:04,397 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#108](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-04-04 10:01:04,399 [ scc.config] DEBUG Found github.token
2026-04-04 10:01:04,399 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-04-04 10:01:04,399 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-04-04 10:01:04,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:04,404 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-04-04 10:01:04,411 [ scc.git] DEBUG Auto-merging README.rst
2026-04-04 10:01:04,411 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-04-04 10:01:04,412 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:01:04,415 [ scc.git] DEBUG README.rst | 3 +
2026-04-04 10:01:04,415 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-04-04 10:01:04,415 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-04-04 10:01:04,415 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-04-04 10:01:04,415 [ scc.git] DEBUG setup.py | 5 +-
2026-04-04 10:01:04,415 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-04-04 10:01:04,415 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-04-04 10:01:04,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:04,830 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:01:04,869 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:04,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:04,871 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:01:04,908 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:01:04,911 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6d4dad0> has no local changes
2026-04-04 10:01:04,911 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:01:04,917 [ scc.git] DEBUG [detached HEAD 81561ac] merge master -Dorg -Ssuccess-only
2026-04-04 10:01:04,917 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:04,917 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:01:05,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-04-04 10:01:05,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-04-04 10:01:05,827 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:01:06,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-04-04 10:01:07,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:01:07,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:01:08,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-04-04 10:01:08,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:01:08,489 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:08,489 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:01:08,489 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-04-04 10:01:08,489 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:08,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:08,492 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:01:08,494 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:01:08,494 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:01:08,497 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:01:08,499 [ scc.git] DEBUG Already up to date.
2026-04-04 10:01:08,499 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-04-04 10:01:08,873 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-04-04 10:01:08,873 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-04-04 10:01:08,876 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:01:08,876 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:08,876 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:08,879 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-04-04 10:01:08,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:08,883 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-04-04 10:01:08,889 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:01:08,891 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:01:08,891 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:01:09,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:09,062 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:01:09,102 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:09,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:09,104 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:01:09,142 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:01:09,145 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6deb290> has no local changes
2026-04-04 10:01:09,146 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:01:09,151 [ scc.git] DEBUG [detached HEAD 775adad] merge master -Dorg -Ssuccess-only
2026-04-04 10:01:09,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:09,151 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:01:09,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-04-04 10:01:10,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-04-04 10:01:10,257 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-04 10:01:10,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-04-04 10:01:11,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-04 10:01:12,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-04 10:01:12,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-04-04 10:01:13,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-04-04 10:01:13,301 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:13,302 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:01:13,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-04-04 10:01:13,302 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:13,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:13,304 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:01:13,307 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:01:13,307 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:01:13,309 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:01:13,312 [ scc.git] DEBUG Already up to date.
2026-04-04 10:01:13,312 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-04-04 10:01:13,622 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-04-04 10:01:13,622 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-04-04 10:01:13,625 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:01:13,625 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:13,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:13,628 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-04-04 10:01:13,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:13,632 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-04-04 10:01:13,639 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-04 10:01:13,641 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-04 10:01:13,641 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-04 10:01:13,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:13,813 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:01:13,851 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:13,851 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:13,853 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:01:13,889 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:01:13,893 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e43f3d50> has no local changes
2026-04-04 10:01:13,893 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:01:13,898 [ scc.git] DEBUG [detached HEAD 1020b01] merge master -Dorg -Ssuccess-only
2026-04-04 10:01:13,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:13,898 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:01:14,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-04-04 10:01:14,262 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:01:14,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-04-04 10:01:14,262 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:14,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:14,265 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-04 10:01:14,267 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:01:14,267 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-04 10:01:14,270 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-04 10:01:14,273 [ scc.git] DEBUG Already up to date.
2026-04-04 10:01:14,273 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:01:14,273 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:14,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:14,276 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:01:14,315 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:14,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:14,317 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:01:14,355 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:01:14,358 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e6e24810> has no local changes
2026-04-04 10:01:14,358 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:01:14,364 [ scc.git] DEBUG [detached HEAD 435279c] merge master -Dorg -Ssuccess-only
2026-04-04 10:01:14,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:14,364 [ scc.git] INFO Overriding base-branch from master to develop
2026-04-04 10:01:14,364 [ scc.repo] DEBUG ## PRs found:
2026-04-04 10:01:14,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2
2026-04-04 10:01:14,701 [ scc.repo] DEBUG ## Branches found:
2026-04-04 10:01:14,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-04-04 10:01:14,701 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:14,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:14,704 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-04-04 10:01:14,706 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-04 10:01:14,706 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-04-04 10:01:14,709 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-04-04 10:01:14,721 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-04-04 10:01:15,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-04-04 10:01:16,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-04-04 10:01:16,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-04-04 10:01:17,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-04-04 10:01:18,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-04-04 10:01:18,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-04-04 10:01:19,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-04-04 10:01:19,251 [ scc.git] DEBUG ## Unique users: []
2026-04-04 10:01:19,251 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:19,251 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:19,254 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-04 10:01:19,292 [ scc.git] DEBUG Get sha1 of %s
2026-04-04 10:01:19,292 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-04 10:01:19,294 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:01:19,332 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:01:19,336 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e43fe410> has no local changes
2026-04-04 10:01:19,336 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:01:19,342 [ scc.git] DEBUG [detached HEAD cb4c31c] merge master -Dorg -Ssuccess-only
2026-04-04 10:01:19,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:19,342 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-04 10:01:19,413 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-04-04 10:01:19,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:19,681 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-04-04 10:01:19,682 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-04-04 10:01:20,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:20,111 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-04-04 10:01:20,113 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-04-04 10:01:20,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:20,540 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-04-04 10:01:20,542 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-04-04 10:01:20,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:20,970 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-04-04 10:01:21,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:21,402 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-04-04 10:01:21,404 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-04-04 10:01:21,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:21,831 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-04-04 10:01:21,833 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-04-04 10:01:22,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:22,256 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-04-04 10:01:22,259 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-04-04 10:01:22,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:22,686 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-04-04 10:01:22,688 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-04-04 10:01:23,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:23,114 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-04-04 10:01:23,116 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-04-04 10:01:23,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:23,533 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-04-04 10:01:23,536 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-04-04 10:01:23,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:23,962 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-04-04 10:01:23,964 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-04-04 10:01:24,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:24,394 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-04-04 10:01:24,396 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-04-04 10:01:24,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:24,820 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-04-04 10:01:25,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:25,255 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-04-04 10:01:25,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:25,685 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-04-04 10:01:25,687 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-04-04 10:01:26,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:26,119 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-04-04 10:01:26,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:26,547 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-04-04 10:01:26,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:26,989 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-04-04 10:01:26,991 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-04-04 10:01:27,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:27,420 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-04-04 10:01:27,421 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-04-04 10:01:27,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:27,840 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-04-04 10:01:27,842 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-04-04 10:01:28,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:28,289 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-04-04 10:01:28,291 [ scc.config] DEBUG Found submodule.scripts.url
2026-04-04 10:01:28,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-04 10:01:28,715 [ scc.config] DEBUG Found submodule.scripts.branch
2026-04-04 10:01:28,715 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-04 10:01:28,795 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f31e82ad2d0> has local changes
2026-04-04 10:01:28,795 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..46ba7b1c
Previously merged:
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 666 will-moore 'Standalone app'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..4ffc4ac
Previously merged:
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 517 will-moore 'Fix roi link permissions'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#108 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/108/)'
2026-04-04 10:01:28,807 [ scc.git] DEBUG [detached HEAD 5e17615] merge master -Dorg -Ssuccess-only
2026-04-04 10:01:28,807 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-04-04 10:01:28,807 [ scc.merge] INFO Repository: ome/omero-plugins
2026-04-04 10:01:28,807 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,807 [ scc.merge] INFO
2026-04-04 10:01:28,807 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-04-04 10:01:28,808 [ scc.merge] INFO
2026-04-04 10:01:28,808 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-04-04 10:01:28,808 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,808 [ scc.merge] INFO
2026-04-04 10:01:28,808 [ scc.merge] INFO
2026-04-04 10:01:28,808 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-04-04 10:01:28,808 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-04-04 10:01:28,808 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,808 [ scc.merge] INFO
2026-04-04 10:01:28,808 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,808 [ scc.merge] INFO
2026-04-04 10:01:28,808 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-04-04 10:01:28,808 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-04-04 10:01:28,808 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-04-04 10:01:28,808 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-04-04 10:01:28,808 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-04-04 10:01:28,808 [ scc.merge] INFO
2026-04-04 10:01:28,809 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-04-04 10:01:28,809 [ scc.merge] INFO
2026-04-04 10:01:28,809 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-04-04 10:01:28,809 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-04-04 10:01:28,809 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-04-04 10:01:28,809 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-04-04 10:01:28,809 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:01:28,809 [ scc.merge] INFO
2026-04-04 10:01:28,810 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-04-04 10:01:28,810 [ scc.merge] INFO
2026-04-04 10:01:28,810 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-04-04 10:01:28,810 [ scc.merge] INFO
2026-04-04 10:01:28,810 [ scc.merge] INFO Repository: ome/omero-figure
2026-04-04 10:01:28,810 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-04-04 10:01:28,810 [ scc.merge] INFO Updating 9cc36cde..46ba7b1c
2026-04-04 10:01:28,810 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-04-04 10:01:28,810 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:01:28,811 [ scc.merge] INFO
2026-04-04 10:01:28,811 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-04-04 10:01:28,811 [ scc.merge] INFO
2026-04-04 10:01:28,811 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-04-04 10:01:28,811 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,811 [ scc.merge] INFO
2026-04-04 10:01:28,811 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-04-04 10:01:28,811 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,811 [ scc.merge] INFO
2026-04-04 10:01:28,811 [ scc.merge] INFO Repository: ome/omero-gallery
2026-04-04 10:01:28,812 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,812 [ scc.merge] INFO
2026-04-04 10:01:28,812 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-04-04 10:01:28,812 [ scc.merge] INFO
2026-04-04 10:01:28,812 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-04-04 10:01:28,812 [ scc.merge] INFO
2026-04-04 10:01:28,812 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-04-04 10:01:28,812 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-04-04 10:01:28,812 [ scc.merge] INFO Updating 7a798ce..4ffc4ac
2026-04-04 10:01:28,812 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:01:28,812 [ scc.merge] INFO
2026-04-04 10:01:28,812 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-04-04 10:01:28,812 [ scc.merge] INFO
2026-04-04 10:01:28,812 [ scc.merge] INFO Repository: ome/omero-mapr
2026-04-04 10:01:28,812 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,812 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-04-04 10:01:28,812 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Repository: ome/omero-metadata
2026-04-04 10:01:28,813 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-04-04 10:01:28,813 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Repository: ome/omero-parade
2026-04-04 10:01:28,813 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-04-04 10:01:28,813 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-04-04 10:01:28,813 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,813 [ scc.merge] INFO Repository: ome/omero-rois
2026-04-04 10:01:28,813 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-04-04 10:01:28,813 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-04-04 10:01:28,813 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-04-04 10:01:28,813 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-04-04 10:01:28,813 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Repository: ome/omero-signup
2026-04-04 10:01:28,814 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-04-04 10:01:28,814 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-04-04 10:01:28,814 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-04-04 10:01:28,814 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Repository: ome/omero-upload
2026-04-04 10:01:28,814 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-04-04 10:01:28,814 [ scc.merge] INFO Updating deab817..160d894
2026-04-04 10:01:28,814 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-04-04 10:01:28,814 [ scc.merge] INFO Excluded PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-04-04 10:01:28,814 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-04-04 10:01:28,814 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,814 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,814 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-04-04 10:01:28,814 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-04-04 10:01:28,815 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-04-04 10:01:28,815 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Merged PRs:
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-04-04 10:01:28,815 [ scc.merge] INFO Already up to date.
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO Repository: ome/scripts
2026-04-04 10:01:28,815 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-04-04 10:01:28,815 [ scc.merge] INFO Previously merged:
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-04-04 10:01:28,815 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] INFO
2026-04-04 10:01:28,815 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-04-04 10:01:28,815 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-04-04 10:01:28,818 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-04-04 10:01:28,820 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-04-04 10:01:28,823 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-04-04 10:01:28,825 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-04-04 10:01:28,827 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-04-04 10:01:28,829 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-04-04 10:01:28,831 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-04-04 10:01:28,834 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-04-04 10:01:28,836 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,838 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,838 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-04-04 10:01:28,838 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-04-04 10:01:28,840 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-04-04 10:01:28,843 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,847 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,848 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-04-04 10:01:28,848 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-04-04 10:01:28,850 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-04-04 10:01:28,853 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-04-04 10:01:28,855 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-04-04 10:01:28,857 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-04-04 10:01:28,859 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-04-04 10:01:28,861 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,863 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,863 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-04-04 10:01:28,863 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,865 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-04-04 10:01:28,866 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,868 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-04 10:01:28,868 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-04-04 10:01:28,868 [ scc.git] DEBUG Calling 'git remote'
2026-04-04 10:01:28,870 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 26ce855] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD e7744d1] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-04-04 10:02:15,205 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-04-04 10:02:24,658 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-04-04 10:02:27,204 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-04-04 10:02:32,090 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-04-04 10:03:15,897 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
