Console Output
Skipping 182 KB..
Full Logt] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:43:49,875 [ scc.git] DEBUG [detached HEAD dc195de] merge master -Dorg -Ssuccess-only
2026-04-16 00:43:49,875 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:43:49,875 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:43:50,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-04-16 00:43:50,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-04-16 00:43:51,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-04-16 00:43:51,387 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:43:52,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-04-16 00:43:52,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:43:53,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:43:53,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-04-16 00:43:54,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:43:54,214 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:43:54,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-04-16 00:43:55,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-04-16 00:43:55,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:43:56,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-04-16 00:43:56,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:43:56,809 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:43:57,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-04-16 00:43:57,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-04-16 00:43:58,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-04-16 00:43:59,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:43:59,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-04-16 00:43:59,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:43:59,910 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-04-16 00:43:59,911 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:43:59,911 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-04-16 00:43:59,911 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:43:59,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:43:59,914 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:43:59,916 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:43:59,916 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:43:59,918 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:43:59,921 [ scc.git] DEBUG Already up to date.
2026-04-16 00:43:59,921 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-04-16 00:44:00,321 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-04-16 00:44:00,321 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-04-16 00:44:00,325 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-04-16 00:44:00,688 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-04-16 00:44:00,688 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-04-16 00:44:00,693 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-04-16 00:44:01,097 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-04-16 00:44:01,098 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-04-16 00:44:01,101 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:01,101 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:01,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:01,104 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-04-16 00:44:01,107 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:01,109 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-04-16 00:44:01,116 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:01,119 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-04-16 00:44:01,119 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-04-16 00:44:01,119 [ scc.git] DEBUG requirements.txt | 2 +-
2026-04-16 00:44:01,119 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-04-16 00:44:01,119 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-04-16 00:44:01,119 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-04-16 00:44:01,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:01,309 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-04-16 00:44:01,313 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:01,315 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-04-16 00:44:01,323 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:01,326 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:44:01,326 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:44:01,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:01,756 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-04-16 00:44:01,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:01,761 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-04-16 00:44:01,768 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-04-16 00:44:01,768 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-04-16 00:44:01,768 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-16 00:44:01,769 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-16 00:44:01,771 [ scc.git] DEBUG Calling 'git reset --hard aee334d2d342ea75e2215388d7580ea54e083a35'
2026-04-16 00:44:01,775 [ scc.git] DEBUG HEAD is now at aee334d merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-04-16 00:44:02,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:02,187 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-04-16 00:44:02,189 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-04-16 00:44:02,192 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#121](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-04-16 00:44:02,194 [ scc.config] DEBUG Found github.token
2026-04-16 00:44:02,194 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-04-16 00:44:02,194 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:02,231 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:02,231 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:02,233 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:02,269 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:02,273 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f93553d10> has no local changes
2026-04-16 00:44:02,273 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:02,279 [ scc.git] DEBUG [detached HEAD 44717e5] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:02,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:02,279 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:02,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-04-16 00:44:03,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-04-16 00:44:03,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-04-16 00:44:04,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:05,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:05,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:06,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:06,076 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-04-16 00:44:06,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-04-16 00:44:07,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-04-16 00:44:07,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:08,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:08,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:09,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:09,203 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-04-16 00:44:09,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-04-16 00:44:10,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-04-16 00:44:10,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:11,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:11,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:12,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:12,295 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-04-16 00:44:12,295 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:12,295 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-04-16 00:44:12,296 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:12,296 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:12,298 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:12,301 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:12,301 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:12,303 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:12,309 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-04-16 00:44:12,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-04-16 00:44:12,998 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-04-16 00:44:13,283 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-04-16 00:44:13,284 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-04-16 00:44:13,287 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-04-16 00:44:13,748 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-04-16 00:44:13,748 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-04-16 00:44:13,751 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-04-16 00:44:14,115 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-04-16 00:44:14,115 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-04-16 00:44:14,119 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:14,119 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:14,119 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:14,121 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-04-16 00:44:14,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:14,128 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-04-16 00:44:14,139 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-04-16 00:44:14,139 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-04-16 00:44:14,139 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-04-16 00:44:14,139 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-04-16 00:44:14,139 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-16 00:44:14,140 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-16 00:44:14,142 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-16 00:44:14,147 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-04-16 00:44:14,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:14,348 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-04-16 00:44:14,351 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-16 00:44:14,354 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#121](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-04-16 00:44:14,356 [ scc.config] DEBUG Found github.token
2026-04-16 00:44:14,356 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-04-16 00:44:14,356 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-04-16 00:44:14,360 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:14,362 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-04-16 00:44:14,375 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-04-16 00:44:14,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-04-16 00:44:14,375 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-04-16 00:44:14,375 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-16 00:44:14,376 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-16 00:44:14,378 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-16 00:44:14,383 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-04-16 00:44:14,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:14,785 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-04-16 00:44:14,788 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-04-16 00:44:14,791 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#121](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-04-16 00:44:14,793 [ scc.config] DEBUG Found github.token
2026-04-16 00:44:14,793 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-04-16 00:44:14,793 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-04-16 00:44:14,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:14,797 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-04-16 00:44:14,806 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:14,810 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-04-16 00:44:14,810 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-04-16 00:44:15,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:15,219 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:15,257 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:15,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:15,259 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:15,295 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:15,299 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f946fddd0> has no local changes
2026-04-16 00:44:15,299 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:15,305 [ scc.git] DEBUG [detached HEAD af6f838] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:15,305 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:15,305 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:15,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-04-16 00:44:16,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-04-16 00:44:16,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:17,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:17,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:44:18,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:18,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:18,861 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:44:19,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-04-16 00:44:19,363 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:44:19,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:20,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:21,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:44:21,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:22,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:22,025 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-04-16 00:44:22,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-04-16 00:44:22,592 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:44:23,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:23,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:24,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:24,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:24,622 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-04-16 00:44:25,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-04-16 00:44:25,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-04-16 00:44:26,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-04-16 00:44:26,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-04-16 00:44:27,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-04-16 00:44:27,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-04-16 00:44:28,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-04-16 00:44:28,105 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:28,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-04-16 00:44:28,105 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:28,105 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:28,108 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:28,110 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:28,110 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:28,112 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:28,115 [ scc.git] DEBUG Already up to date.
2026-04-16 00:44:28,115 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-04-16 00:44:28,478 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-04-16 00:44:28,478 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-04-16 00:44:28,482 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-04-16 00:44:28,847 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-04-16 00:44:28,847 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-04-16 00:44:28,851 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-04-16 00:44:29,182 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-04-16 00:44:29,182 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-04-16 00:44:29,185 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:29,185 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:29,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:29,188 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-04-16 00:44:29,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:29,192 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-04-16 00:44:29,199 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:29,202 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-04-16 00:44:29,202 [ scc.git] DEBUG package.json | 2 +-
2026-04-16 00:44:29,202 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-04-16 00:44:29,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:29,388 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-04-16 00:44:29,391 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:29,393 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-04-16 00:44:29,401 [ scc.git] DEBUG Auto-merging package-lock.json
2026-04-16 00:44:29,401 [ scc.git] DEBUG Auto-merging package.json
2026-04-16 00:44:29,402 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:29,405 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-04-16 00:44:29,405 [ scc.git] DEBUG package.json | 2 +-
2026-04-16 00:44:29,405 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-04-16 00:44:29,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:29,821 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-04-16 00:44:29,823 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:29,825 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-04-16 00:44:29,833 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:29,835 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:44:29,835 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:44:30,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:30,255 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:30,292 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:30,292 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:30,294 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:30,330 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:30,334 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f93589110> has no local changes
2026-04-16 00:44:30,334 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:30,339 [ scc.git] DEBUG [detached HEAD df5ba0e] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:30,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:30,340 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:30,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-04-16 00:44:31,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-04-16 00:44:31,329 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:44:32,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:32,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:33,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:44:33,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:34,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:34,289 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:44:34,289 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:34,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-04-16 00:44:34,289 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:34,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:34,292 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:34,294 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:34,294 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:34,297 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:34,299 [ scc.git] DEBUG Already up to date.
2026-04-16 00:44:34,299 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-04-16 00:44:34,696 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-04-16 00:44:34,696 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-04-16 00:44:34,700 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:34,700 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:34,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:34,702 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-04-16 00:44:34,704 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:34,707 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-04-16 00:44:34,713 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:34,715 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:44:34,715 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:44:34,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:34,895 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:34,932 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:34,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:34,934 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:34,971 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:34,974 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f9359dbd0> has no local changes
2026-04-16 00:44:34,974 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:34,980 [ scc.git] DEBUG [detached HEAD 621cf38] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:34,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:34,980 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:35,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-04-16 00:44:35,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-04-16 00:44:35,928 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:35,928 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-04-16 00:44:35,928 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:35,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:35,930 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:35,932 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:35,933 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:35,935 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:35,943 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-04-16 00:44:36,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-04-16 00:44:37,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-04-16 00:44:37,495 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:37,495 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:37,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:37,497 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:37,534 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:37,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:37,536 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:37,573 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:37,576 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f935a41d0> has no local changes
2026-04-16 00:44:37,576 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:37,581 [ scc.git] DEBUG [detached HEAD e14611e] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:37,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:37,582 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:38,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-04-16 00:44:38,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-04-16 00:44:38,543 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:44:39,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:39,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:40,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:44:40,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:41,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:41,144 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:44:41,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-04-16 00:44:42,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-04-16 00:44:42,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:43,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:43,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:44,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:44,249 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-04-16 00:44:44,249 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:44,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-04-16 00:44:44,249 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:44,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:44,252 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:44,254 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:44,254 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:44,257 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:44,260 [ scc.git] DEBUG Already up to date.
2026-04-16 00:44:44,260 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-04-16 00:44:44,613 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-04-16 00:44:44,613 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-04-16 00:44:44,616 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-04-16 00:44:44,958 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-04-16 00:44:44,958 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-04-16 00:44:44,962 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:44,962 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:44,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:44,965 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-04-16 00:44:44,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:44,970 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-04-16 00:44:44,977 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG Auto-merging setup.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-04-16 00:44:44,977 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-16 00:44:44,977 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-16 00:44:44,980 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-04-16 00:44:44,984 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-04-16 00:44:45,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:45,174 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-04-16 00:44:45,177 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-04-16 00:44:45,179 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#121](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- setup.py
- omero_signup/signup_settings.py
- omero_signup/views.py
--conflicts
2026-04-16 00:44:45,181 [ scc.config] DEBUG Found github.token
2026-04-16 00:44:45,181 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-04-16 00:44:45,181 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-04-16 00:44:45,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:45,186 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-04-16 00:44:45,192 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:45,195 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:44:45,195 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:44:45,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:45,609 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:45,647 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:45,647 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:45,649 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:45,685 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:45,688 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f935c80d0> has no local changes
2026-04-16 00:44:45,688 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:45,693 [ scc.git] DEBUG [detached HEAD 20876f1] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:45,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:45,694 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:46,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-04-16 00:44:46,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-04-16 00:44:47,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-04-16 00:44:47,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-04-16 00:44:48,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:49,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:49,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:49,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:49,962 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-04-16 00:44:49,962 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:49,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-04-16 00:44:49,962 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:49,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:49,965 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:49,967 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:49,967 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:49,970 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:49,976 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-04-16 00:44:50,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-04-16 00:44:51,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-04-16 00:44:52,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-04-16 00:44:52,068 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-04-16 00:44:52,538 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-04-16 00:44:52,538 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-04-16 00:44:52,541 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:52,542 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:52,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:52,544 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-04-16 00:44:52,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:52,549 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-04-16 00:44:52,555 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-04-16 00:44:52,556 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:52,559 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-04-16 00:44:52,559 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-04-16 00:44:52,559 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-04-16 00:44:52,559 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-04-16 00:44:52,559 [ scc.git] DEBUG ms/test | 2 ++
2026-04-16 00:44:52,559 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-04-16 00:44:52,559 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-04-16 00:44:52,559 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-04-16 00:44:52,559 [ scc.git] DEBUG create mode 100755 ms/test
2026-04-16 00:44:52,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:52,893 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:52,929 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:52,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:52,931 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:52,967 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:52,970 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f935ac5d0> has no local changes
2026-04-16 00:44:52,970 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:52,976 [ scc.git] DEBUG [detached HEAD 66ebde8] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:52,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:52,976 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:53,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-04-16 00:44:53,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-04-16 00:44:53,930 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:44:54,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:55,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:44:55,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:44:56,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:56,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:44:56,908 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:44:56,908 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:44:56,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-04-16 00:44:56,908 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:56,908 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:56,910 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:44:56,913 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:44:56,913 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:44:56,915 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:44:56,918 [ scc.git] DEBUG Already up to date.
2026-04-16 00:44:56,918 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-04-16 00:44:57,206 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-04-16 00:44:57,206 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-04-16 00:44:57,210 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:44:57,210 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:57,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:57,212 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-04-16 00:44:57,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:57,217 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-04-16 00:44:57,223 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:44:57,225 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:44:57,225 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:44:57,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:44:57,563 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:44:57,601 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:44:57,601 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:44:57,603 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:44:57,638 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:44:57,641 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f94791490> has no local changes
2026-04-16 00:44:57,641 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:44:57,647 [ scc.git] DEBUG [detached HEAD 3300bea] merge master -Dorg -Ssuccess-only
2026-04-16 00:44:57,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:44:57,647 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:44:58,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-04-16 00:44:58,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-04-16 00:44:58,650 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:44:59,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-04-16 00:44:59,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:45:00,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:45:01,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:01,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:45:01,450 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:01,450 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:45:01,450 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-04-16 00:45:01,450 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:01,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:01,452 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:45:01,455 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:45:01,455 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:45:01,457 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:45:01,464 [ scc.git] DEBUG Updating deab817..160d894
2026-04-16 00:45:02,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-04-16 00:45:02,191 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-04-16 00:45:02,720 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-04-16 00:45:02,720 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-04-16 00:45:02,723 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:45:02,724 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:02,724 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:02,726 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-04-16 00:45:02,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:02,731 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-04-16 00:45:02,737 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:45:02,739 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:45:02,739 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:45:02,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:02,923 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:45:02,961 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:02,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:02,963 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:03,002 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:03,005 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f94738bd0> has no local changes
2026-04-16 00:45:03,005 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:03,010 [ scc.git] DEBUG [detached HEAD e31830d] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:03,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:03,010 [ scc.git] INFO Overriding base-branch from master to main
2026-04-16 00:45:03,011 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:45:03,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-04-16 00:45:04,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-04-16 00:45:04,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-04-16 00:45:05,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:05,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:45:06,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:45:06,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:07,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:45:07,279 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-04-16 00:45:07,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-04-16 00:45:08,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-04-16 00:45:08,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-04-16 00:45:09,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:09,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:45:10,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:10,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:45:10,912 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-04-16 00:45:10,912 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:45:10,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-04-16 00:45:10,912 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:10,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:10,915 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-04-16 00:45:10,917 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:45:10,917 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-04-16 00:45:10,920 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-04-16 00:45:10,926 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-04-16 00:45:11,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-04-16 00:45:12,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-04-16 00:45:12,339 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-04-16 00:45:12,762 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-04-16 00:45:12,762 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-04-16 00:45:12,766 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-04-16 00:45:13,215 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-04-16 00:45:13,215 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-04-16 00:45:13,219 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:45:13,219 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:13,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:13,221 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-04-16 00:45:13,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:13,226 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-04-16 00:45:13,234 [ scc.git] DEBUG Auto-merging README.rst
2026-04-16 00:45:13,234 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-04-16 00:45:13,234 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-04-16 00:45:13,234 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-04-16 00:45:13,234 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-04-16 00:45:13,234 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-04-16 00:45:13,236 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-04-16 00:45:13,240 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-04-16 00:45:13,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:13,419 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-04-16 00:45:13,422 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-04-16 00:45:13,425 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#121](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-04-16 00:45:13,427 [ scc.config] DEBUG Found github.token
2026-04-16 00:45:13,427 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-04-16 00:45:13,427 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-04-16 00:45:13,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:13,432 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-04-16 00:45:13,439 [ scc.git] DEBUG Auto-merging README.rst
2026-04-16 00:45:13,439 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-04-16 00:45:13,439 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:45:13,442 [ scc.git] DEBUG README.rst | 3 +
2026-04-16 00:45:13,443 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-04-16 00:45:13,443 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-04-16 00:45:13,443 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-04-16 00:45:13,443 [ scc.git] DEBUG setup.py | 5 +-
2026-04-16 00:45:13,443 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-04-16 00:45:13,443 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-04-16 00:45:13,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:13,866 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:45:13,904 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:13,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:13,906 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:13,943 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:13,946 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f94768d90> has no local changes
2026-04-16 00:45:13,946 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:13,952 [ scc.git] DEBUG [detached HEAD 0395300] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:13,952 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:13,952 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:45:14,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-04-16 00:45:14,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-04-16 00:45:14,911 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:45:15,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:16,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:45:16,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:45:17,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:17,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:45:17,663 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:17,663 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:45:17,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-04-16 00:45:17,663 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:17,663 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:17,666 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:45:17,668 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:45:17,668 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:45:17,671 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:45:17,674 [ scc.git] DEBUG Already up to date.
2026-04-16 00:45:17,674 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-04-16 00:45:17,975 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-04-16 00:45:17,975 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-04-16 00:45:17,979 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:45:17,979 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:17,979 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:17,981 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-04-16 00:45:17,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:17,986 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-04-16 00:45:17,992 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:45:17,994 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:45:17,994 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:45:18,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:18,187 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:45:18,227 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:18,227 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:18,229 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:18,266 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:18,269 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f9361aa50> has no local changes
2026-04-16 00:45:18,269 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:18,274 [ scc.git] DEBUG [detached HEAD 559670e] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:18,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:18,274 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:45:18,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-04-16 00:45:19,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-04-16 00:45:19,248 [ scc.repo] DEBUG # ... Include label: dependencies
2026-04-16 00:45:19,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:20,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-04-16 00:45:20,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-04-16 00:45:21,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-04-16 00:45:21,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-04-16 00:45:21,820 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:21,820 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:45:21,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-04-16 00:45:21,820 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:21,820 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:21,823 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:45:21,825 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:45:21,825 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:45:21,828 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:45:21,831 [ scc.git] DEBUG Already up to date.
2026-04-16 00:45:21,831 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-04-16 00:45:22,275 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-04-16 00:45:22,275 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-04-16 00:45:22,279 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:45:22,279 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:22,279 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:22,281 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-04-16 00:45:22,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:22,286 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-04-16 00:45:22,292 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-04-16 00:45:22,294 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-04-16 00:45:22,295 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-04-16 00:45:22,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:22,465 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:45:22,503 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:22,503 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:22,505 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:22,541 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:22,544 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f935f7290> has no local changes
2026-04-16 00:45:22,544 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:22,550 [ scc.git] DEBUG [detached HEAD e4b5e1d] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:22,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:22,550 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:45:22,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-04-16 00:45:22,935 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:45:22,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-04-16 00:45:22,935 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:22,935 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:22,938 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-04-16 00:45:22,940 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:45:22,940 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-04-16 00:45:22,942 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-04-16 00:45:22,945 [ scc.git] DEBUG Already up to date.
2026-04-16 00:45:22,945 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:45:22,945 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:22,945 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:22,947 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:45:22,983 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:22,983 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:22,985 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:23,020 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:23,023 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f9040a1d0> has no local changes
2026-04-16 00:45:23,023 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:23,029 [ scc.git] DEBUG [detached HEAD 89a7c8a] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:23,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:23,029 [ scc.git] INFO Overriding base-branch from master to develop
2026-04-16 00:45:23,029 [ scc.repo] DEBUG ## PRs found:
2026-04-16 00:45:23,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2
2026-04-16 00:45:23,411 [ scc.repo] DEBUG ## Branches found:
2026-04-16 00:45:23,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-04-16 00:45:23,412 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:23,412 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:23,414 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-04-16 00:45:23,416 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-04-16 00:45:23,416 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-04-16 00:45:23,419 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-04-16 00:45:23,431 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-04-16 00:45:24,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-04-16 00:45:24,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-04-16 00:45:25,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-04-16 00:45:26,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-04-16 00:45:27,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-04-16 00:45:27,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-04-16 00:45:28,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-04-16 00:45:28,438 [ scc.git] DEBUG ## Unique users: []
2026-04-16 00:45:28,438 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:28,438 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:28,441 [ scc.git] DEBUG Calling 'git submodule update'
2026-04-16 00:45:28,480 [ scc.git] DEBUG Get sha1 of %s
2026-04-16 00:45:28,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-04-16 00:45:28,483 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:28,521 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:28,525 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f93598c10> has no local changes
2026-04-16 00:45:28,525 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:28,530 [ scc.git] DEBUG [detached HEAD cb80674] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:28,531 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:28,531 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-04-16 00:45:28,601 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-04-16 00:45:28,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:28,864 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-04-16 00:45:28,866 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-04-16 00:45:29,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:29,294 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-04-16 00:45:29,296 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-04-16 00:45:29,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:29,738 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-04-16 00:45:29,740 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-04-16 00:45:30,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:30,171 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-04-16 00:45:30,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:30,609 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-04-16 00:45:30,611 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-04-16 00:45:31,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:31,089 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-04-16 00:45:31,091 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-04-16 00:45:31,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:31,532 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-04-16 00:45:31,533 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-04-16 00:45:31,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:31,965 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-04-16 00:45:31,967 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-04-16 00:45:32,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:32,405 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-04-16 00:45:32,407 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-04-16 00:45:32,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:32,830 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-04-16 00:45:32,832 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-04-16 00:45:33,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:33,272 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-04-16 00:45:33,274 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-04-16 00:45:33,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:33,704 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-04-16 00:45:33,706 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-04-16 00:45:34,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:34,134 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-04-16 00:45:34,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:34,592 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-04-16 00:45:35,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:35,028 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-04-16 00:45:35,030 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-04-16 00:45:35,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:35,469 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-04-16 00:45:35,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:35,924 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-04-16 00:45:36,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:36,354 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-04-16 00:45:36,356 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-04-16 00:45:36,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:36,791 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-04-16 00:45:36,793 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-04-16 00:45:37,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:37,228 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-04-16 00:45:37,230 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-04-16 00:45:37,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:37,659 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-04-16 00:45:37,661 [ scc.config] DEBUG Found submodule.scripts.url
2026-04-16 00:45:38,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-04-16 00:45:38,090 [ scc.config] DEBUG Found submodule.scripts.branch
2026-04-16 00:45:38,090 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-04-16 00:45:38,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3f958c68d0> has local changes
2026-04-16 00:45:38,170 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..f0affd1a
Previously merged:
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 680 will-moore 'Use --pre install for export script in README'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..4ffc4ac
Previously merged:
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 517 will-moore 'Fix roi link permissions'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#121 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/121/)'
2026-04-16 00:45:38,181 [ scc.git] DEBUG [detached HEAD 768b030] merge master -Dorg -Ssuccess-only
2026-04-16 00:45:38,181 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-04-16 00:45:38,181 [ scc.merge] INFO Repository: ome/omero-plugins
2026-04-16 00:45:38,181 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,181 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-04-16 00:45:38,182 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-04-16 00:45:38,182 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-04-16 00:45:38,182 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-04-16 00:45:38,182 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-04-16 00:45:38,182 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-04-16 00:45:38,182 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-04-16 00:45:38,182 [ scc.merge] INFO
2026-04-16 00:45:38,182 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-04-16 00:45:38,182 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-04-16 00:45:38,182 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-04-16 00:45:38,182 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-04-16 00:45:38,182 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:45:38,183 [ scc.merge] INFO
2026-04-16 00:45:38,183 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-04-16 00:45:38,183 [ scc.merge] INFO
2026-04-16 00:45:38,183 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-04-16 00:45:38,183 [ scc.merge] INFO
2026-04-16 00:45:38,183 [ scc.merge] INFO Repository: ome/omero-figure
2026-04-16 00:45:38,183 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-04-16 00:45:38,183 [ scc.merge] INFO Updating 9cc36cde..f0affd1a
2026-04-16 00:45:38,183 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-04-16 00:45:38,183 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-04-16 00:45:38,184 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Repository: ome/omero-gallery
2026-04-16 00:45:38,184 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-04-16 00:45:38,184 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-04-16 00:45:38,184 [ scc.merge] INFO Updating 7a798ce..4ffc4ac
2026-04-16 00:45:38,184 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-04-16 00:45:38,184 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:45:38,184 [ scc.merge] INFO
2026-04-16 00:45:38,184 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Repository: ome/omero-mapr
2026-04-16 00:45:38,185 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-04-16 00:45:38,185 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Repository: ome/omero-metadata
2026-04-16 00:45:38,185 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-04-16 00:45:38,185 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Repository: ome/omero-parade
2026-04-16 00:45:38,185 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-04-16 00:45:38,185 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,185 [ scc.merge] INFO
2026-04-16 00:45:38,185 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-04-16 00:45:38,185 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-04-16 00:45:38,186 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Repository: ome/omero-rois
2026-04-16 00:45:38,186 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-04-16 00:45:38,186 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-04-16 00:45:38,186 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Repository: ome/omero-signup
2026-04-16 00:45:38,186 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-04-16 00:45:38,186 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-04-16 00:45:38,186 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-04-16 00:45:38,186 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Repository: ome/omero-upload
2026-04-16 00:45:38,186 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-04-16 00:45:38,186 [ scc.merge] INFO Updating deab817..160d894
2026-04-16 00:45:38,186 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-04-16 00:45:38,186 [ scc.merge] INFO
2026-04-16 00:45:38,186 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,186 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-04-16 00:45:38,187 [ scc.merge] INFO Excluded PRs:
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-04-16 00:45:38,187 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-04-16 00:45:38,187 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Conflicting PRs (not included):
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-04-16 00:45:38,187 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-04-16 00:45:38,187 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Merged PRs:
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-04-16 00:45:38,187 [ scc.merge] INFO Already up to date.
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO Repository: ome/scripts
2026-04-16 00:45:38,187 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-04-16 00:45:38,187 [ scc.merge] INFO Previously merged:
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-04-16 00:45:38,187 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] INFO
2026-04-16 00:45:38,187 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-04-16 00:45:38,188 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-04-16 00:45:38,190 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-04-16 00:45:38,192 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,194 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,194 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-04-16 00:45:38,194 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,196 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,196 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-04-16 00:45:38,196 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,198 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,198 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-04-16 00:45:38,198 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-04-16 00:45:38,200 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-04-16 00:45:38,202 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-04-16 00:45:38,204 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-04-16 00:45:38,207 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-04-16 00:45:38,209 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-04-16 00:45:38,211 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-04-16 00:45:38,213 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-04-16 00:45:38,215 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,217 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,217 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-04-16 00:45:38,217 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-04-16 00:45:38,220 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,222 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-04-16 00:45:38,222 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-04-16 00:45:38,224 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-04-16 00:45:38,226 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-04-16 00:45:38,228 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-04-16 00:45:38,230 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-04-16 00:45:38,232 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-04-16 00:45:38,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-04-16 00:45:38,235 [ scc.git] DEBUG Calling 'git remote'
2026-04-16 00:45:38,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 45d692f] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 834aac1] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-04-16 00:46:26,397 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-04-16 00:46:36,251 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-04-16 00:46:38,845 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-04-16 00:46:43,812 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-04-16 00:47:25,064 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
