Console Output
Skipping 174 KB..
Full Log" 200 None
2026-05-28 00:43:06,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:06,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:07,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:07,235 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-05-28 00:43:07,235 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:07,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-05-28 00:43:07,236 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:07,236 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:07,238 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:07,240 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:07,240 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:07,243 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:07,246 [ scc.git] DEBUG Already up to date.
2026-05-28 00:43:07,246 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-05-28 00:43:07,600 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-05-28 00:43:07,600 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-05-28 00:43:07,604 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-05-28 00:43:07,953 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-05-28 00:43:07,953 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-05-28 00:43:07,957 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-05-28 00:43:08,292 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-05-28 00:43:08,292 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-05-28 00:43:08,296 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:08,296 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:08,296 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:08,298 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-05-28 00:43:08,301 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:08,303 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-05-28 00:43:08,311 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:08,314 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-05-28 00:43:08,314 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-05-28 00:43:08,314 [ scc.git] DEBUG requirements.txt | 2 +-
2026-05-28 00:43:08,314 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-05-28 00:43:08,314 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-05-28 00:43:08,314 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-05-28 00:43:08,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:08,505 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-05-28 00:43:08,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:08,510 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-05-28 00:43:08,518 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:08,520 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:43:08,520 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:43:08,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:08,948 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-05-28 00:43:08,951 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:08,953 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-05-28 00:43:08,960 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-05-28 00:43:08,960 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-05-28 00:43:08,960 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-28 00:43:08,960 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-28 00:43:08,963 [ scc.git] DEBUG Calling 'git reset --hard dcaaa92cfb816c1ae29d8e48b56058823ceb9427'
2026-05-28 00:43:08,966 [ scc.git] DEBUG HEAD is now at dcaaa92 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-05-28 00:43:09,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:09,379 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-05-28 00:43:09,381 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-05-28 00:43:09,384 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#155](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-05-28 00:43:09,386 [ scc.config] DEBUG Found github.token
2026-05-28 00:43:09,386 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-05-28 00:43:09,386 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:09,423 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:09,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:09,425 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:09,462 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:09,465 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819cfd50> has no local changes
2026-05-28 00:43:09,465 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:09,471 [ scc.git] DEBUG [detached HEAD 90cd28f] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:09,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:09,471 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:10,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-05-28 00:43:10,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-05-28 00:43:11,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-05-28 00:43:11,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:12,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:12,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:13,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:13,130 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-05-28 00:43:13,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-05-28 00:43:14,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-05-28 00:43:14,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:15,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:15,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:16,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:16,117 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-05-28 00:43:16,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-05-28 00:43:17,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-05-28 00:43:17,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:18,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:18,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:19,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:19,095 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-05-28 00:43:19,095 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:19,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-05-28 00:43:19,095 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:19,096 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:19,098 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:19,100 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:19,100 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:19,103 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:19,109 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-05-28 00:43:19,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-05-28 00:43:19,909 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-05-28 00:43:20,266 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-05-28 00:43:20,266 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-05-28 00:43:20,270 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-05-28 00:43:20,609 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-05-28 00:43:20,609 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-05-28 00:43:20,613 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-05-28 00:43:20,947 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-05-28 00:43:20,947 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-05-28 00:43:20,950 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:20,950 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:20,951 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:20,953 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-05-28 00:43:20,956 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:20,958 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-05-28 00:43:20,970 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-05-28 00:43:20,970 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-05-28 00:43:20,970 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-05-28 00:43:20,970 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-05-28 00:43:20,970 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-28 00:43:20,971 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-28 00:43:20,973 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-28 00:43:20,977 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-05-28 00:43:21,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:21,184 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-05-28 00:43:21,187 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-28 00:43:21,190 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#155](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-05-28 00:43:21,192 [ scc.config] DEBUG Found github.token
2026-05-28 00:43:21,192 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-05-28 00:43:21,192 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-05-28 00:43:21,196 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:21,198 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-05-28 00:43:21,211 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-05-28 00:43:21,211 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-05-28 00:43:21,211 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-05-28 00:43:21,211 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-28 00:43:21,211 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-28 00:43:21,214 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-28 00:43:21,218 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-05-28 00:43:21,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:21,631 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-05-28 00:43:21,635 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-28 00:43:21,637 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#155](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-05-28 00:43:21,639 [ scc.config] DEBUG Found github.token
2026-05-28 00:43:21,639 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-05-28 00:43:21,639 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-05-28 00:43:21,641 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:21,643 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-05-28 00:43:21,651 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:21,655 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-05-28 00:43:21,655 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-05-28 00:43:22,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:22,075 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:22,111 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:22,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:22,113 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:22,147 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:22,151 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819d8950> has no local changes
2026-05-28 00:43:22,151 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:22,156 [ scc.git] DEBUG [detached HEAD 96ca80e] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:22,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:22,157 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:22,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-05-28 00:43:23,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-05-28 00:43:23,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:24,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:24,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:25,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:25,210 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:43:25,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-05-28 00:43:25,687 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:43:26,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:26,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:27,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:27,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:27,853 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-05-28 00:43:28,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-05-28 00:43:28,362 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:43:28,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:29,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:30,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:30,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:30,669 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-05-28 00:43:31,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-05-28 00:43:31,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-05-28 00:43:32,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-05-28 00:43:32,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-05-28 00:43:33,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-05-28 00:43:33,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-05-28 00:43:34,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-05-28 00:43:34,135 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:34,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-05-28 00:43:34,135 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:34,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:34,137 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:34,140 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:34,140 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:34,142 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:34,145 [ scc.git] DEBUG Already up to date.
2026-05-28 00:43:34,145 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-05-28 00:43:34,489 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-05-28 00:43:34,489 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-05-28 00:43:34,493 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-05-28 00:43:34,842 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-05-28 00:43:34,842 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-05-28 00:43:34,846 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-05-28 00:43:35,116 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-05-28 00:43:35,116 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-05-28 00:43:35,120 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:35,120 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:35,120 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:35,122 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-05-28 00:43:35,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:35,127 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-05-28 00:43:35,134 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:35,137 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-05-28 00:43:35,137 [ scc.git] DEBUG package.json | 2 +-
2026-05-28 00:43:35,137 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-05-28 00:43:35,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:35,330 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-05-28 00:43:35,332 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:35,334 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-05-28 00:43:35,343 [ scc.git] DEBUG Auto-merging package-lock.json
2026-05-28 00:43:35,343 [ scc.git] DEBUG Auto-merging package.json
2026-05-28 00:43:35,343 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:35,346 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-05-28 00:43:35,346 [ scc.git] DEBUG package.json | 2 +-
2026-05-28 00:43:35,346 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-05-28 00:43:35,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:35,767 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-05-28 00:43:35,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:35,772 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-05-28 00:43:35,779 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:35,781 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:43:35,781 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:43:36,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:36,201 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:36,236 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:36,236 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:36,238 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:36,274 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:36,278 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819dae10> has no local changes
2026-05-28 00:43:36,278 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:36,284 [ scc.git] DEBUG [detached HEAD 7bec694] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:36,284 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:36,284 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:36,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-05-28 00:43:37,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-05-28 00:43:37,246 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:43:37,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:38,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:38,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:43:39,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:39,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:39,920 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:43:39,921 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:39,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-05-28 00:43:39,921 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:39,921 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:39,923 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:39,925 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:39,925 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:39,928 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:39,930 [ scc.git] DEBUG Already up to date.
2026-05-28 00:43:39,930 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-05-28 00:43:40,271 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-05-28 00:43:40,271 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-05-28 00:43:40,275 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:40,275 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:40,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:40,277 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-05-28 00:43:40,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:40,282 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-05-28 00:43:40,287 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:40,290 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:43:40,290 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:43:40,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:40,465 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:40,502 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:40,502 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:40,504 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:40,539 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:40,542 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819e8710> has no local changes
2026-05-28 00:43:40,542 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:40,548 [ scc.git] DEBUG [detached HEAD 204bbf2] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:40,548 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:40,548 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:41,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-05-28 00:43:41,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-05-28 00:43:41,524 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:41,524 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-05-28 00:43:41,524 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:41,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:41,526 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:41,528 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:41,528 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:41,531 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:41,538 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-05-28 00:43:42,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-05-28 00:43:43,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-05-28 00:43:43,006 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:43,006 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:43,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:43,009 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:43,044 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:43,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:43,046 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:43,081 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:43,084 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819fe950> has no local changes
2026-05-28 00:43:43,084 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:43,089 [ scc.git] DEBUG [detached HEAD 60691ab] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:43,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:43,090 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:43,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-05-28 00:43:44,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-05-28 00:43:44,097 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:43:44,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:45,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:45,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:43:46,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:46,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:46,789 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:43:47,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-05-28 00:43:47,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-05-28 00:43:48,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:48,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:49,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:49,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:49,827 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-05-28 00:43:49,827 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:49,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-05-28 00:43:49,828 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:49,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:49,830 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:49,832 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:49,832 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:49,834 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:49,837 [ scc.git] DEBUG Already up to date.
2026-05-28 00:43:49,837 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-05-28 00:43:50,213 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-05-28 00:43:50,213 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-05-28 00:43:50,217 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-05-28 00:43:50,544 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-05-28 00:43:50,544 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-05-28 00:43:50,548 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:50,548 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:50,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:50,550 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-05-28 00:43:50,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:50,555 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-05-28 00:43:50,562 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG Auto-merging setup.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-05-28 00:43:50,563 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-28 00:43:50,563 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-28 00:43:50,565 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-05-28 00:43:50,569 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-05-28 00:43:50,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:50,753 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-05-28 00:43:50,756 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-05-28 00:43:50,758 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#155](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/urls.py
--conflicts
2026-05-28 00:43:50,760 [ scc.config] DEBUG Found github.token
2026-05-28 00:43:50,760 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-05-28 00:43:50,760 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-05-28 00:43:50,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:50,764 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-05-28 00:43:50,771 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:50,773 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:43:50,773 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:43:51,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:51,194 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:51,231 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:51,232 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:51,234 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:51,268 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:51,271 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3982bbeb10> has no local changes
2026-05-28 00:43:51,271 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:51,277 [ scc.git] DEBUG [detached HEAD b1f1d98] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:51,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:51,277 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:51,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-05-28 00:43:52,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-05-28 00:43:52,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-05-28 00:43:53,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-05-28 00:43:53,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:54,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:43:54,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-05-28 00:43:55,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:43:55,403 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-05-28 00:43:55,404 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:43:55,404 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-05-28 00:43:55,404 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:55,404 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:55,406 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:43:55,408 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:43:55,408 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:43:55,411 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:43:55,417 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-05-28 00:43:56,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-05-28 00:43:56,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-05-28 00:43:57,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-05-28 00:43:57,528 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-05-28 00:43:57,919 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-05-28 00:43:57,919 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-05-28 00:43:57,923 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:43:57,923 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:57,923 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:57,925 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-05-28 00:43:57,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:57,930 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-05-28 00:43:57,936 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-05-28 00:43:57,937 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:43:57,940 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-05-28 00:43:57,940 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-05-28 00:43:57,940 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-05-28 00:43:57,940 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-05-28 00:43:57,940 [ scc.git] DEBUG ms/test | 2 ++
2026-05-28 00:43:57,940 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-05-28 00:43:57,940 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-05-28 00:43:57,940 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-05-28 00:43:57,940 [ scc.git] DEBUG create mode 100755 ms/test
2026-05-28 00:43:58,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:43:58,127 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:43:58,164 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:43:58,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:43:58,166 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:43:58,202 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:43:58,205 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819d3490> has no local changes
2026-05-28 00:43:58,205 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:43:58,211 [ scc.git] DEBUG [detached HEAD fe9f375] merge master -Dorg -Ssuccess-only
2026-05-28 00:43:58,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:43:58,211 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:43:58,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-05-28 00:43:59,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-05-28 00:43:59,330 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:43:59,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:00,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:44:01,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:44:01,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:01,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:44:01,971 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:01,971 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:01,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-05-28 00:44:01,971 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:01,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:01,973 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:44:01,975 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:01,975 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:44:01,978 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:44:01,981 [ scc.git] DEBUG Already up to date.
2026-05-28 00:44:01,981 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-05-28 00:44:02,272 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-05-28 00:44:02,272 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-05-28 00:44:02,276 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:02,276 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:02,276 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:02,278 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-05-28 00:44:02,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:02,282 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-05-28 00:44:02,288 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:44:02,291 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:44:02,291 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:44:02,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:02,484 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:02,520 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:02,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:02,522 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:02,557 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:02,560 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3981a1f650> has no local changes
2026-05-28 00:44:02,560 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:02,565 [ scc.git] DEBUG [detached HEAD 22f2414] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:02,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:02,565 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:44:03,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-05-28 00:44:03,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-05-28 00:44:03,690 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:44:04,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:04,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:44:05,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:44:06,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:06,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:44:06,455 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:06,455 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:06,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-05-28 00:44:06,455 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:06,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:06,457 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:44:06,459 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:06,459 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:44:06,462 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:44:06,468 [ scc.git] DEBUG Updating deab817..160d894
2026-05-28 00:44:07,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-05-28 00:44:07,180 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-05-28 00:44:07,529 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-05-28 00:44:07,529 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-05-28 00:44:07,533 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:07,533 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:07,533 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:07,535 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-05-28 00:44:07,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:07,540 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-05-28 00:44:07,546 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:44:07,548 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:44:07,548 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:44:07,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:07,742 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:07,779 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:07,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:07,781 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:07,817 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:07,820 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3981a42550> has no local changes
2026-05-28 00:44:07,820 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:07,826 [ scc.git] DEBUG [detached HEAD d1940c0] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:07,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:07,826 [ scc.git] INFO Overriding base-branch from master to main
2026-05-28 00:44:07,826 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:44:08,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-05-28 00:44:08,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-05-28 00:44:09,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-05-28 00:44:10,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:10,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:44:11,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:44:11,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:12,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:44:12,074 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-05-28 00:44:12,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-05-28 00:44:13,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-05-28 00:44:13,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-05-28 00:44:14,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:14,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:44:15,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:15,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:44:15,606 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-05-28 00:44:15,607 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:15,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-05-28 00:44:15,607 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:15,607 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:15,609 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-05-28 00:44:15,611 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:15,611 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-05-28 00:44:15,614 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-05-28 00:44:15,620 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-05-28 00:44:16,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-05-28 00:44:17,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-05-28 00:44:17,229 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-05-28 00:44:17,520 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-05-28 00:44:17,520 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-05-28 00:44:17,524 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-05-28 00:44:17,868 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-05-28 00:44:17,868 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-05-28 00:44:17,871 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:17,871 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:17,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:17,874 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-05-28 00:44:17,876 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:17,878 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-05-28 00:44:17,885 [ scc.git] DEBUG Auto-merging README.rst
2026-05-28 00:44:17,885 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-05-28 00:44:17,885 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-05-28 00:44:17,885 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-05-28 00:44:17,885 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-28 00:44:17,885 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-28 00:44:17,888 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-05-28 00:44:17,891 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-05-28 00:44:18,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:18,108 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-05-28 00:44:18,110 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-05-28 00:44:18,113 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#155](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-05-28 00:44:18,115 [ scc.config] DEBUG Found github.token
2026-05-28 00:44:18,115 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-05-28 00:44:18,115 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-05-28 00:44:18,117 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:18,119 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-05-28 00:44:18,126 [ scc.git] DEBUG Auto-merging README.rst
2026-05-28 00:44:18,126 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-05-28 00:44:18,127 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:44:18,130 [ scc.git] DEBUG README.rst | 3 +
2026-05-28 00:44:18,130 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-05-28 00:44:18,130 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-05-28 00:44:18,130 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-05-28 00:44:18,130 [ scc.git] DEBUG setup.py | 5 +-
2026-05-28 00:44:18,130 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-05-28 00:44:18,130 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-05-28 00:44:18,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:18,561 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:18,599 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:18,599 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:18,601 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:18,637 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:18,641 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3981a19110> has no local changes
2026-05-28 00:44:18,641 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:18,646 [ scc.git] DEBUG [detached HEAD 2ceebf3] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:18,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:18,647 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:44:19,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-05-28 00:44:19,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-05-28 00:44:19,623 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:44:20,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:20,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:44:21,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:44:21,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:22,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:44:22,342 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:22,342 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:22,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-05-28 00:44:22,342 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:22,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:22,345 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:44:22,347 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:22,347 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:44:22,349 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:44:22,352 [ scc.git] DEBUG Already up to date.
2026-05-28 00:44:22,352 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-05-28 00:44:22,658 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-05-28 00:44:22,658 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-05-28 00:44:22,662 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:22,662 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:22,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:22,664 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-05-28 00:44:22,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:22,668 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-05-28 00:44:22,675 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:44:22,677 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:44:22,677 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:44:22,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:22,891 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:22,928 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:22,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:22,930 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:22,966 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:22,969 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3981a795d0> has no local changes
2026-05-28 00:44:22,969 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:22,974 [ scc.git] DEBUG [detached HEAD 9de6757] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:22,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:22,975 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:44:23,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-05-28 00:44:23,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-05-28 00:44:23,956 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-28 00:44:24,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:25,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-28 00:44:25,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-28 00:44:26,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-05-28 00:44:26,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-05-28 00:44:26,590 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:26,591 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:26,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-05-28 00:44:26,591 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:26,591 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:26,593 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:44:26,595 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:26,595 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:44:26,598 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:44:26,601 [ scc.git] DEBUG Already up to date.
2026-05-28 00:44:26,601 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-05-28 00:44:26,950 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-05-28 00:44:26,950 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-05-28 00:44:26,954 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:26,954 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:26,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:26,956 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-05-28 00:44:26,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:26,961 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-05-28 00:44:26,967 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-28 00:44:26,969 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-28 00:44:26,969 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-28 00:44:27,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:27,170 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:27,207 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:27,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:27,209 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:27,245 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:27,249 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3982bbfa90> has no local changes
2026-05-28 00:44:27,249 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:27,254 [ scc.git] DEBUG [detached HEAD 7d5bbaa] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:27,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:27,255 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:44:27,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-05-28 00:44:27,663 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:27,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-05-28 00:44:27,663 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:27,663 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:27,665 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-28 00:44:27,667 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:27,667 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-28 00:44:27,669 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-28 00:44:27,672 [ scc.git] DEBUG Already up to date.
2026-05-28 00:44:27,672 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:27,672 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:27,672 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:27,674 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:27,712 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:27,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:27,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:27,750 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:27,753 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f39819991d0> has no local changes
2026-05-28 00:44:27,753 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:27,759 [ scc.git] DEBUG [detached HEAD 4751e23] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:27,759 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:27,759 [ scc.git] INFO Overriding base-branch from master to develop
2026-05-28 00:44:27,759 [ scc.repo] DEBUG ## PRs found:
2026-05-28 00:44:28,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2
2026-05-28 00:44:28,135 [ scc.repo] DEBUG ## Branches found:
2026-05-28 00:44:28,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-05-28 00:44:28,135 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:28,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:28,137 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-05-28 00:44:28,139 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-28 00:44:28,139 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-05-28 00:44:28,142 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-05-28 00:44:28,153 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-05-28 00:44:28,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-05-28 00:44:29,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-05-28 00:44:30,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-05-28 00:44:30,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-05-28 00:44:31,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-05-28 00:44:32,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-05-28 00:44:32,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-05-28 00:44:32,960 [ scc.git] DEBUG ## Unique users: []
2026-05-28 00:44:32,960 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:32,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:32,963 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-28 00:44:33,000 [ scc.git] DEBUG Get sha1 of %s
2026-05-28 00:44:33,000 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-28 00:44:33,002 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:33,038 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:33,042 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3981a04e90> has no local changes
2026-05-28 00:44:33,042 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:33,048 [ scc.git] DEBUG [detached HEAD bf46c24] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:33,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:33,048 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-28 00:44:33,120 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-05-28 00:44:33,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:33,420 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-05-28 00:44:33,422 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-05-28 00:44:33,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:33,853 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-05-28 00:44:33,855 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-05-28 00:44:34,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:34,294 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-05-28 00:44:34,296 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-05-28 00:44:34,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:34,728 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-05-28 00:44:35,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:35,167 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-05-28 00:44:35,168 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-05-28 00:44:35,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:35,762 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-05-28 00:44:35,764 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-05-28 00:44:36,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:36,214 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-05-28 00:44:36,216 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-05-28 00:44:36,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:36,659 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-05-28 00:44:36,660 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-05-28 00:44:37,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:37,089 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-05-28 00:44:37,091 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-05-28 00:44:37,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:37,534 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-05-28 00:44:37,536 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-05-28 00:44:37,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:37,966 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-05-28 00:44:37,968 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-05-28 00:44:38,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:38,423 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-05-28 00:44:38,425 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-05-28 00:44:38,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:38,858 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-05-28 00:44:39,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:39,295 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-05-28 00:44:39,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:39,731 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-05-28 00:44:39,732 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-05-28 00:44:40,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:40,174 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-05-28 00:44:40,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:40,615 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-05-28 00:44:41,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:41,043 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-05-28 00:44:41,045 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-05-28 00:44:41,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:41,479 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-05-28 00:44:41,480 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-05-28 00:44:41,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:41,915 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-05-28 00:44:41,916 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-05-28 00:44:42,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:42,346 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-05-28 00:44:42,348 [ scc.config] DEBUG Found submodule.scripts.url
2026-05-28 00:44:42,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-28 00:44:42,786 [ scc.config] DEBUG Found submodule.scripts.branch
2026-05-28 00:44:42,786 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-28 00:44:42,860 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3982b9d950> has local changes
2026-05-28 00:44:42,860 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 196 will-moore 'Storage options only if needed' (status: failure)
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Updating 9cc36cde..e68b3e14
Previously merged:
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 532 will-moore 'Zarr layers' (stage: draft)
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798ce..3b7bb10
Previously merged:
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 227 will-moore 'Vectortile investigation'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#155 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/155/)'
2026-05-28 00:44:42,871 [ scc.git] DEBUG [detached HEAD 6a8cf20] merge master -Dorg -Ssuccess-only
2026-05-28 00:44:42,871 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-05-28 00:44:42,872 [ scc.merge] INFO Repository: ome/omero-plugins
2026-05-28 00:44:42,872 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-05-28 00:44:42,872 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-05-28 00:44:42,872 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-05-28 00:44:42,872 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-05-28 00:44:42,872 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-05-28 00:44:42,872 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-05-28 00:44:42,872 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-05-28 00:44:42,872 [ scc.merge] INFO
2026-05-28 00:44:42,872 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-05-28 00:44:42,872 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' (status: failure)
2026-05-28 00:44:42,872 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-05-28 00:44:42,873 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-05-28 00:44:42,873 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:44:42,873 [ scc.merge] INFO
2026-05-28 00:44:42,873 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-05-28 00:44:42,873 [ scc.merge] INFO
2026-05-28 00:44:42,873 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-05-28 00:44:42,873 [ scc.merge] INFO
2026-05-28 00:44:42,873 [ scc.merge] INFO Repository: ome/omero-figure
2026-05-28 00:44:42,873 [ scc.merge] INFO Updating 9cc36cde..e68b3e14
2026-05-28 00:44:42,873 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-05-28 00:44:42,873 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:44:42,874 [ scc.merge] INFO
2026-05-28 00:44:42,874 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-05-28 00:44:42,874 [ scc.merge] INFO
2026-05-28 00:44:42,874 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-05-28 00:44:42,874 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,874 [ scc.merge] INFO
2026-05-28 00:44:42,874 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,874 [ scc.merge] INFO
2026-05-28 00:44:42,874 [ scc.merge] INFO Repository: ome/omero-gallery
2026-05-28 00:44:42,874 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,874 [ scc.merge] INFO
2026-05-28 00:44:42,874 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-05-28 00:44:42,874 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-05-28 00:44:42,875 [ scc.merge] INFO
2026-05-28 00:44:42,875 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-05-28 00:44:42,875 [ scc.merge] INFO
2026-05-28 00:44:42,875 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-05-28 00:44:42,875 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' (stage: draft)
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-05-28 00:44:42,875 [ scc.merge] INFO Updating 7a798ce..3b7bb10
2026-05-28 00:44:42,875 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:44:42,875 [ scc.merge] INFO
2026-05-28 00:44:42,875 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-05-28 00:44:42,875 [ scc.merge] INFO
2026-05-28 00:44:42,875 [ scc.merge] INFO Repository: ome/omero-mapr
2026-05-28 00:44:42,875 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,875 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-05-28 00:44:42,876 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Repository: ome/omero-metadata
2026-05-28 00:44:42,876 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-05-28 00:44:42,876 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Repository: ome/omero-parade
2026-05-28 00:44:42,876 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-05-28 00:44:42,876 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-05-28 00:44:42,876 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO Repository: ome/omero-rois
2026-05-28 00:44:42,876 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-05-28 00:44:42,876 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-05-28 00:44:42,876 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-05-28 00:44:42,876 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,876 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Repository: ome/omero-signup
2026-05-28 00:44:42,877 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-05-28 00:44:42,877 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-05-28 00:44:42,877 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-05-28 00:44:42,877 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Repository: ome/omero-upload
2026-05-28 00:44:42,877 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-05-28 00:44:42,877 [ scc.merge] INFO Updating deab817..160d894
2026-05-28 00:44:42,877 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-05-28 00:44:42,877 [ scc.merge] INFO Excluded PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-05-28 00:44:42,877 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-05-28 00:44:42,877 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-28 00:44:42,877 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-05-28 00:44:42,877 [ scc.merge] INFO
2026-05-28 00:44:42,877 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-05-28 00:44:42,878 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-05-28 00:44:42,878 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO Merged PRs:
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-05-28 00:44:42,878 [ scc.merge] INFO Already up to date.
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO Repository: ome/scripts
2026-05-28 00:44:42,878 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-05-28 00:44:42,878 [ scc.merge] INFO Previously merged:
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-05-28 00:44:42,878 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] INFO
2026-05-28 00:44:42,878 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-05-28 00:44:42,878 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,880 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-05-28 00:44:42,880 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,882 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,882 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-05-28 00:44:42,882 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-05-28 00:44:42,884 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,886 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,886 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-05-28 00:44:42,886 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-05-28 00:44:42,888 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-05-28 00:44:42,890 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-05-28 00:44:42,892 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-05-28 00:44:42,894 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-05-28 00:44:42,896 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-05-28 00:44:42,898 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-05-28 00:44:42,900 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,902 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,902 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-05-28 00:44:42,902 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,905 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,905 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-05-28 00:44:42,905 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,907 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,907 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-05-28 00:44:42,907 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-05-28 00:44:42,909 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,911 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-05-28 00:44:42,912 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-05-28 00:44:42,914 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-05-28 00:44:42,916 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-05-28 00:44:42,918 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-05-28 00:44:42,920 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-05-28 00:44:42,922 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-28 00:44:42,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-05-28 00:44:42,924 [ scc.git] DEBUG Calling 'git remote'
2026-05-28 00:44:42,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 167f0c0] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 4ad99d3] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-05-28 00:45:32,184 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-05-28 00:45:42,408 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-05-28 00:45:45,150 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-05-28 00:45:50,231 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-05-28 00:46:38,384 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
