Console Output
Skipping 174 KB..
Full Logions(-)
2026-01-12 00:39:56,440 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md
2026-01-12 00:39:56,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:39:56,817 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688'
2026-01-12 00:39:56,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:39:56,823 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688'
2026-01-12 00:39:56,836 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-12 00:39:56,837 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:39:56,840 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++--
2026-01-12 00:39:56,840 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-)
2026-01-12 00:39:57,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:39:57,211 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:39:57,249 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:39:57,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:39:57,251 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:39:57,290 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:39:57,296 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe14908d0> has no local changes
2026-01-12 00:39:57,296 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:39:57,302 [ scc.git] DEBUG [detached HEAD 88f13a7] merge master -Dorg -Ssuccess-only
2026-01-12 00:39:57,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:39:57,303 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:39:57,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-01-12 00:39:58,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-01-12 00:39:58,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-01-12 00:39:58,721 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:39:59,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-12 00:39:59,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:00,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:00,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-12 00:40:01,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:01,174 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:40:01,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-01-12 00:40:02,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-12 00:40:02,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:03,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-12 00:40:03,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:03,562 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:40:04,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-01-12 00:40:04,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-01-12 00:40:05,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-12 00:40:05,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:05,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-12 00:40:06,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:06,414 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-01-12 00:40:06,414 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:06,414 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-12 00:40:06,414 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:06,414 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:06,417 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:06,419 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:06,419 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:06,421 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:06,425 [ scc.git] DEBUG Already up to date.
2026-01-12 00:40:06,425 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-01-12 00:40:06,695 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-12 00:40:06,695 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-01-12 00:40:06,699 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-01-12 00:40:06,957 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-12 00:40:06,957 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-01-12 00:40:06,961 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-01-12 00:40:07,210 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-12 00:40:07,210 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-01-12 00:40:07,214 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:40:07,214 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:07,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:07,217 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-12 00:40:07,220 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:07,222 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-12 00:40:07,230 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:07,233 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-01-12 00:40:07,233 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-01-12 00:40:07,233 [ scc.git] DEBUG requirements.txt | 2 +-
2026-01-12 00:40:07,233 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-01-12 00:40:07,233 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-01-12 00:40:07,233 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-01-12 00:40:07,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:07,384 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-12 00:40:07,387 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:07,389 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-12 00:40:07,396 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:07,399 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:40:07,399 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:40:07,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:07,769 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-12 00:40:07,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:07,775 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-12 00:40:07,782 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-12 00:40:07,782 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-01-12 00:40:07,782 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-12 00:40:07,782 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-12 00:40:07,785 [ scc.git] DEBUG Calling 'git reset --hard d80a871220c91051d4201fd1df054755115fb7cb'
2026-01-12 00:40:07,788 [ scc.git] DEBUG HEAD is now at d80a871 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-01-12 00:40:08,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:08,165 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-12 00:40:08,168 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-01-12 00:40:08,170 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#17](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-01-12 00:40:08,172 [ scc.config] DEBUG Found github.token
2026-01-12 00:40:08,172 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-01-12 00:40:08,172 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:40:08,212 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:08,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:08,214 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:40:08,251 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:40:08,255 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe1481310> has no local changes
2026-01-12 00:40:08,255 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:40:08,261 [ scc.git] DEBUG [detached HEAD 5059874] merge master -Dorg -Ssuccess-only
2026-01-12 00:40:08,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:40:08,262 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:40:08,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-01-12 00:40:09,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-01-12 00:40:09,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-01-12 00:40:10,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-12 00:40:10,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:11,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-12 00:40:11,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:11,728 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-12 00:40:12,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-01-12 00:40:12,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-01-12 00:40:13,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-12 00:40:13,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:14,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-12 00:40:14,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:14,537 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-12 00:40:14,537 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:14,537 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-12 00:40:14,537 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:14,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:14,540 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:14,542 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:14,542 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:14,545 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:14,551 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-01-12 00:40:15,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-01-12 00:40:15,255 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-01-12 00:40:15,518 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-12 00:40:15,518 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-01-12 00:40:15,522 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-01-12 00:40:15,782 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-12 00:40:15,782 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-01-12 00:40:15,786 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:40:15,786 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:15,786 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:15,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-12 00:40:15,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:15,795 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-12 00:40:15,807 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-01-12 00:40:15,807 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-01-12 00:40:15,807 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-12 00:40:15,808 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-12 00:40:15,808 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-12 00:40:15,808 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-12 00:40:15,810 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-12 00:40:15,815 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-12 00:40:15,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:15,993 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-12 00:40:15,996 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-12 00:40:15,999 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#17](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-01-12 00:40:16,001 [ scc.config] DEBUG Found github.token
2026-01-12 00:40:16,002 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-01-12 00:40:16,002 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-12 00:40:16,005 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:16,007 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-12 00:40:16,020 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-12 00:40:16,020 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-12 00:40:16,020 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-01-12 00:40:16,021 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-12 00:40:16,021 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-12 00:40:16,024 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-12 00:40:16,028 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-12 00:40:16,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:16,374 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-12 00:40:16,378 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-12 00:40:16,381 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#17](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-01-12 00:40:16,383 [ scc.config] DEBUG Found github.token
2026-01-12 00:40:16,383 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-01-12 00:40:16,383 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:40:16,421 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:16,421 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:16,423 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:40:16,459 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:40:16,463 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe13f6f50> has no local changes
2026-01-12 00:40:16,463 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:40:16,470 [ scc.git] DEBUG [detached HEAD a8c8f82] merge master -Dorg -Ssuccess-only
2026-01-12 00:40:16,470 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:40:16,470 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:40:16,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-01-12 00:40:17,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-01-12 00:40:17,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-12 00:40:18,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:18,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:19,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-12 00:40:19,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:19,754 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:40:20,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-01-12 00:40:20,237 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:40:20,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-12 00:40:21,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:21,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:22,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-12 00:40:22,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:22,802 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-12 00:40:23,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-01-12 00:40:23,299 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:40:23,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-12 00:40:24,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:25,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:25,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-12 00:40:25,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:25,973 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-12 00:40:26,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-01-12 00:40:26,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-01-12 00:40:27,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-01-12 00:40:27,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-01-12 00:40:28,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-01-12 00:40:28,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-01-12 00:40:29,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-01-12 00:40:29,303 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:29,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-12 00:40:29,304 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:29,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:29,306 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:29,308 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:29,308 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:29,311 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:29,314 [ scc.git] DEBUG Already up to date.
2026-01-12 00:40:29,314 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-01-12 00:40:29,585 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-12 00:40:29,585 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-01-12 00:40:29,588 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-01-12 00:40:29,846 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-12 00:40:29,846 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-01-12 00:40:29,850 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-01-12 00:40:30,141 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-12 00:40:30,141 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-01-12 00:40:30,145 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:40:30,145 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:30,145 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:30,147 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-12 00:40:30,149 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:30,151 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-12 00:40:30,158 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:30,161 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-01-12 00:40:30,161 [ scc.git] DEBUG package.json | 2 +-
2026-01-12 00:40:30,161 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-01-12 00:40:30,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:30,311 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-01-12 00:40:30,313 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:30,316 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-01-12 00:40:30,325 [ scc.git] DEBUG Auto-merging package-lock.json
2026-01-12 00:40:30,325 [ scc.git] DEBUG Auto-merging package.json
2026-01-12 00:40:30,325 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:30,329 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-01-12 00:40:30,329 [ scc.git] DEBUG package.json | 2 +-
2026-01-12 00:40:30,329 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-12 00:40:30,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:30,702 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-12 00:40:30,705 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:30,707 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-12 00:40:30,715 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:30,718 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:40:30,718 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:40:31,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:31,099 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:40:31,138 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:31,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:31,140 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:40:31,177 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:40:31,181 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe14ef650> has no local changes
2026-01-12 00:40:31,181 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:40:31,187 [ scc.git] DEBUG [detached HEAD dd10e97] merge master -Dorg -Ssuccess-only
2026-01-12 00:40:31,187 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:40:31,187 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:40:31,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-01-12 00:40:32,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-01-12 00:40:32,252 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:40:32,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-12 00:40:33,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:33,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:34,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-12 00:40:34,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:34,914 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:40:34,915 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:34,915 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-12 00:40:34,915 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:34,915 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:34,917 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:34,919 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:34,919 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:34,922 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:34,925 [ scc.git] DEBUG Already up to date.
2026-01-12 00:40:34,925 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-01-12 00:40:35,193 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-01-12 00:40:35,193 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-01-12 00:40:35,197 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:40:35,197 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:35,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:35,199 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-12 00:40:35,201 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:35,204 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-12 00:40:35,210 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:35,212 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:40:35,213 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:40:35,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:35,370 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:40:35,406 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:35,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:35,408 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:40:35,446 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:40:35,449 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe1504790> has no local changes
2026-01-12 00:40:35,449 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:40:35,455 [ scc.git] DEBUG [detached HEAD 79ef735] merge master -Dorg -Ssuccess-only
2026-01-12 00:40:35,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:40:35,455 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:40:35,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-01-12 00:40:36,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-01-12 00:40:36,385 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:40:36,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-12 00:40:37,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:37,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:38,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-12 00:40:38,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:39,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-12 00:40:39,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-01-12 00:40:39,842 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:40:40,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-01-12 00:40:40,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-01-12 00:40:41,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-12 00:40:41,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:42,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:42,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-12 00:40:43,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:43,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-12 00:40:44,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-01-12 00:40:44,164 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-01-12 00:40:44,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-01-12 00:40:44,640 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:44,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-12 00:40:44,640 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:44,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:44,643 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:44,645 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:44,645 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:44,647 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:44,650 [ scc.git] DEBUG Already up to date.
2026-01-12 00:40:44,650 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-01-12 00:40:44,933 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-12 00:40:44,933 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-01-12 00:40:44,937 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-01-12 00:40:45,197 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-12 00:40:45,197 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-01-12 00:40:45,202 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:40:45,202 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:45,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:45,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-12 00:40:45,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:45,209 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-12 00:40:45,216 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:45,219 [ scc.git] DEBUG setup.py | 4 +-
2026-01-12 00:40:45,219 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-01-12 00:40:45,219 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-01-12 00:40:45,219 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-01-12 00:40:45,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:45,518 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-01-12 00:40:45,521 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:45,523 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-01-12 00:40:45,530 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:45,532 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:40:45,532 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:40:45,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:45,909 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:40:45,946 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:45,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:45,949 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:40:45,985 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:40:45,988 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe031c150> has no local changes
2026-01-12 00:40:45,988 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:40:45,995 [ scc.git] DEBUG [detached HEAD 806d3fd] merge master -Dorg -Ssuccess-only
2026-01-12 00:40:45,995 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:40:45,995 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:40:46,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-01-12 00:40:46,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-01-12 00:40:46,952 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:40:47,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-12 00:40:48,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:48,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:49,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-12 00:40:49,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:49,474 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:40:50,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-01-12 00:40:50,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-01-12 00:40:51,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-12 00:40:51,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:52,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-12 00:40:52,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:40:52,824 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-12 00:40:52,825 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:52,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-12 00:40:52,825 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:52,825 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:52,827 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:52,829 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:52,829 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:52,832 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:52,835 [ scc.git] DEBUG Already up to date.
2026-01-12 00:40:52,835 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-12 00:40:53,125 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-12 00:40:53,125 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-12 00:40:53,129 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-12 00:40:53,379 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-12 00:40:53,379 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-12 00:40:53,382 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:40:53,382 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:53,382 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:53,384 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-12 00:40:53,387 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:53,389 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-12 00:40:53,397 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG Auto-merging setup.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-01-12 00:40:53,397 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-12 00:40:53,397 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-12 00:40:53,400 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-12 00:40:53,403 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-01-12 00:40:53,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:53,550 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-12 00:40:53,552 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-12 00:40:53,555 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#17](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- setup.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
--conflicts
2026-01-12 00:40:53,557 [ scc.config] DEBUG Found github.token
2026-01-12 00:40:53,557 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-01-12 00:40:53,557 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-12 00:40:53,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:53,561 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-12 00:40:53,568 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:40:53,571 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:40:53,571 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:40:53,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:40:53,941 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:40:53,978 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:53,978 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:53,980 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:40:54,016 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:40:54,019 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe03457d0> has no local changes
2026-01-12 00:40:54,019 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:40:54,025 [ scc.git] DEBUG [detached HEAD 7a26e0d] merge master -Dorg -Ssuccess-only
2026-01-12 00:40:54,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:40:54,025 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:40:54,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-01-12 00:40:55,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-01-12 00:40:55,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-01-12 00:40:56,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-01-12 00:40:56,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-01-12 00:40:57,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:40:57,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:40:57,617 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:40:57,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-12 00:40:57,617 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:40:57,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:40:57,619 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:40:57,622 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:40:57,622 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:40:57,624 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:40:57,631 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-01-12 00:40:58,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-01-12 00:40:59,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-01-12 00:40:59,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-01-12 00:41:00,008 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:00,008 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:00,008 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:00,011 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:00,050 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:00,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:00,052 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:00,089 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:00,092 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe0320590> has no local changes
2026-01-12 00:41:00,092 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:00,098 [ scc.git] DEBUG [detached HEAD 7861d31] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:00,098 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:00,098 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:00,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-01-12 00:41:01,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-01-12 00:41:01,061 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:41:01,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-12 00:41:02,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:41:02,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:41:03,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-12 00:41:03,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:41:03,611 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:03,611 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:03,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-12 00:41:03,611 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:03,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:03,614 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:41:03,616 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:03,616 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:41:03,619 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:41:03,621 [ scc.git] DEBUG Already up to date.
2026-01-12 00:41:03,621 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-12 00:41:03,902 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-01-12 00:41:03,902 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-12 00:41:03,906 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:03,906 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:03,906 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:03,908 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-12 00:41:03,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:03,913 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-12 00:41:03,919 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:41:03,922 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:41:03,922 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:41:04,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:04,055 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:04,093 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:04,093 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:04,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:04,133 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:04,136 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe13f7110> has no local changes
2026-01-12 00:41:04,136 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:04,141 [ scc.git] DEBUG [detached HEAD 0ca4b36] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:04,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:04,142 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:04,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-01-12 00:41:05,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-01-12 00:41:05,055 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:41:05,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-12 00:41:06,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:41:06,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:41:07,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-12 00:41:07,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:41:07,634 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:07,634 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:07,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-12 00:41:07,634 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:07,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:07,636 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:41:07,639 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:07,639 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:41:07,641 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:41:07,648 [ scc.git] DEBUG Updating deab817..160d894
2026-01-12 00:41:08,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-01-12 00:41:08,320 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-12 00:41:08,586 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-01-12 00:41:08,586 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-12 00:41:08,590 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:08,590 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:08,590 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:08,592 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-12 00:41:08,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:08,597 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-12 00:41:08,603 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:41:08,606 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:41:08,606 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:41:08,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:08,755 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:08,793 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:08,793 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:08,795 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:08,832 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:08,835 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe14ef750> has no local changes
2026-01-12 00:41:08,835 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:08,841 [ scc.git] DEBUG [detached HEAD c87d680] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:08,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:08,841 [ scc.git] INFO Overriding base-branch from master to main
2026-01-12 00:41:08,841 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:09,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-01-12 00:41:09,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-01-12 00:41:10,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-01-12 00:41:10,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-12 00:41:11,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:41:11,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:41:12,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-12 00:41:12,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:41:12,976 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-01-12 00:41:13,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-01-12 00:41:13,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-01-12 00:41:14,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-01-12 00:41:14,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-12 00:41:15,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:41:15,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-12 00:41:16,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:41:16,352 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-12 00:41:16,352 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:16,352 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-12 00:41:16,352 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:16,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:16,355 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-01-12 00:41:16,357 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:16,357 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-01-12 00:41:16,360 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-01-12 00:41:16,366 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-01-12 00:41:17,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-01-12 00:41:17,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-01-12 00:41:17,788 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-01-12 00:41:18,064 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-12 00:41:18,065 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-01-12 00:41:18,069 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-01-12 00:41:18,328 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-12 00:41:18,328 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-01-12 00:41:18,333 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:18,333 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:18,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:18,335 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-12 00:41:18,338 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:18,340 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-12 00:41:18,348 [ scc.git] DEBUG Auto-merging README.rst
2026-01-12 00:41:18,348 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-01-12 00:41:18,348 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-01-12 00:41:18,348 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-12 00:41:18,348 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-12 00:41:18,348 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-12 00:41:18,351 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-12 00:41:18,354 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-01-12 00:41:18,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:18,496 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-12 00:41:18,499 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-12 00:41:18,501 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#17](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-01-12 00:41:18,503 [ scc.config] DEBUG Found github.token
2026-01-12 00:41:18,503 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-01-12 00:41:18,503 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-12 00:41:18,506 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:18,508 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-12 00:41:18,515 [ scc.git] DEBUG Auto-merging README.rst
2026-01-12 00:41:18,515 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-12 00:41:18,516 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:41:18,519 [ scc.git] DEBUG README.rst | 3 +
2026-01-12 00:41:18,519 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-01-12 00:41:18,519 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-01-12 00:41:18,519 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-01-12 00:41:18,519 [ scc.git] DEBUG setup.py | 5 +-
2026-01-12 00:41:18,519 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-01-12 00:41:18,519 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-01-12 00:41:18,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:18,890 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:18,931 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:18,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:18,933 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:18,970 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:18,974 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe13d1510> has no local changes
2026-01-12 00:41:18,974 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:18,980 [ scc.git] DEBUG [detached HEAD 43de3ab] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:18,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:18,981 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:19,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-01-12 00:41:19,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-01-12 00:41:19,892 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:41:20,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-12 00:41:20,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:41:21,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:41:21,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-12 00:41:22,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:41:22,420 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:22,420 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:22,420 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-12 00:41:22,420 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:22,420 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:22,422 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:41:22,425 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:22,425 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:41:22,427 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:41:22,430 [ scc.git] DEBUG Already up to date.
2026-01-12 00:41:22,430 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-01-12 00:41:22,698 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-01-12 00:41:22,698 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-01-12 00:41:22,702 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:22,702 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:22,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:22,704 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-12 00:41:22,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:22,709 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-12 00:41:22,715 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:41:22,718 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:41:22,718 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:41:22,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:22,854 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:22,891 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:22,891 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:22,893 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:22,930 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:22,933 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe0338a90> has no local changes
2026-01-12 00:41:22,933 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:22,939 [ scc.git] DEBUG [detached HEAD b6b7950] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:22,939 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:22,939 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:23,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-01-12 00:41:23,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-01-12 00:41:23,832 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-12 00:41:24,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-12 00:41:24,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-12 00:41:25,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-12 00:41:25,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-12 00:41:26,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-01-12 00:41:26,274 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:26,274 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:26,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-12 00:41:26,274 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:26,274 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:26,277 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:41:26,279 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:26,279 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:41:26,282 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:41:26,285 [ scc.git] DEBUG Already up to date.
2026-01-12 00:41:26,285 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-01-12 00:41:26,550 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-01-12 00:41:26,550 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-01-12 00:41:26,554 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:26,554 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:26,554 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:26,556 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-12 00:41:26,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:26,561 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-12 00:41:26,567 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-12 00:41:26,569 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-12 00:41:26,569 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-12 00:41:26,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:26,733 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:26,771 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:26,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:26,773 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:26,810 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:26,813 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe0385710> has no local changes
2026-01-12 00:41:26,813 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:26,819 [ scc.git] DEBUG [detached HEAD b8ff327] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:26,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:26,819 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:27,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-01-12 00:41:27,173 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:27,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-12 00:41:27,173 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:27,173 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:27,175 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-12 00:41:27,177 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:27,177 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-12 00:41:27,180 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-12 00:41:27,183 [ scc.git] DEBUG Already up to date.
2026-01-12 00:41:27,183 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:27,183 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:27,183 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:27,185 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:27,222 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:27,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:27,225 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:27,262 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:27,265 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe01bb4d0> has no local changes
2026-01-12 00:41:27,265 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:27,271 [ scc.git] DEBUG [detached HEAD d58b375] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:27,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:27,271 [ scc.git] INFO Overriding base-branch from master to develop
2026-01-12 00:41:27,271 [ scc.repo] DEBUG ## PRs found:
2026-01-12 00:41:27,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-01-12 00:41:28,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-01-12 00:41:28,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-01-12 00:41:28,701 [ scc.repo] DEBUG ## Branches found:
2026-01-12 00:41:28,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-12 00:41:28,701 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:28,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:28,703 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-01-12 00:41:28,706 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-12 00:41:28,706 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-01-12 00:41:28,708 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-01-12 00:41:28,719 [ scc.git] DEBUG Updating 4b4c755..fb91f15
2026-01-12 00:41:29,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-01-12 00:41:29,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-01-12 00:41:30,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-01-12 00:41:31,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-01-12 00:41:31,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-01-12 00:41:32,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-01-12 00:41:33,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-01-12 00:41:33,299 [ scc.git] DEBUG ## Unique users: []
2026-01-12 00:41:33,299 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:33,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:33,301 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-12 00:41:33,340 [ scc.git] DEBUG Get sha1 of %s
2026-01-12 00:41:33,340 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-12 00:41:33,342 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:33,380 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:33,384 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe01ccf90> has no local changes
2026-01-12 00:41:33,384 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:33,390 [ scc.git] DEBUG [detached HEAD 4bbe443] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:33,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:33,390 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-12 00:41:33,461 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-01-12 00:41:33,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:33,689 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-01-12 00:41:33,691 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-01-12 00:41:34,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:34,089 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-01-12 00:41:34,091 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-01-12 00:41:34,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:34,476 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-01-12 00:41:34,478 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-01-12 00:41:34,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:34,896 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-01-12 00:41:35,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:35,291 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-01-12 00:41:35,293 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-01-12 00:41:35,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:35,688 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-01-12 00:41:35,690 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-01-12 00:41:36,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:36,097 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-01-12 00:41:36,099 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-01-12 00:41:36,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:36,484 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-01-12 00:41:36,486 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-01-12 00:41:36,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:36,884 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-01-12 00:41:36,886 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-01-12 00:41:37,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:37,267 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-01-12 00:41:37,269 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-01-12 00:41:37,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:37,658 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-01-12 00:41:37,660 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-01-12 00:41:38,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:38,062 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-01-12 00:41:38,063 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-01-12 00:41:38,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:38,460 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-01-12 00:41:38,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:38,846 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-01-12 00:41:39,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:39,335 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-01-12 00:41:39,337 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-01-12 00:41:39,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:39,735 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-01-12 00:41:40,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:40,132 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-01-12 00:41:40,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:40,532 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-01-12 00:41:40,534 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-01-12 00:41:40,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:40,928 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-01-12 00:41:40,930 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-01-12 00:41:41,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:41,324 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-01-12 00:41:41,326 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-01-12 00:41:41,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:41,726 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-01-12 00:41:41,728 [ scc.config] DEBUG Found submodule.scripts.url
2026-01-12 00:41:42,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-12 00:41:42,133 [ scc.config] DEBUG Found submodule.scripts.branch
2026-01-12 00:41:42,133 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-12 00:41:42,211 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbe13f6dd0> has local changes
2026-01-12 00:41:42,211 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..ddcf816a
Previously merged:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#17 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/17/)'
2026-01-12 00:41:42,222 [ scc.git] DEBUG [detached HEAD c45cac7] merge master -Dorg -Ssuccess-only
2026-01-12 00:41:42,222 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-01-12 00:41:42,222 [ scc.merge] INFO Repository: ome/omero-plugins
2026-01-12 00:41:42,222 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,222 [ scc.merge] INFO
2026-01-12 00:41:42,222 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,222 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-01-12 00:41:42,222 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-01-12 00:41:42,222 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-01-12 00:41:42,222 [ scc.merge] INFO
2026-01-12 00:41:42,222 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-01-12 00:41:42,222 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,222 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-01-12 00:41:42,223 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-01-12 00:41:42,223 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-01-12 00:41:42,223 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-01-12 00:41:42,223 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-01-12 00:41:42,223 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-01-12 00:41:42,223 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-01-12 00:41:42,223 [ scc.merge] INFO Updating 11d3587..37ea700
2026-01-12 00:41:42,223 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,223 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-01-12 00:41:42,223 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-01-12 00:41:42,223 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-01-12 00:41:42,224 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Repository: ome/omero-figure
2026-01-12 00:41:42,224 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2026-01-12 00:41:42,224 [ scc.merge] INFO Updating 9cc36cde..ddcf816a
2026-01-12 00:41:42,224 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:41:42,224 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-01-12 00:41:42,224 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-01-12 00:41:42,224 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,224 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,224 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Repository: ome/omero-gallery
2026-01-12 00:41:42,224 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,224 [ scc.merge] INFO
2026-01-12 00:41:42,224 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,224 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-01-12 00:41:42,225 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-01-12 00:41:42,225 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-01-12 00:41:42,225 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Repository: ome/omero-mapr
2026-01-12 00:41:42,225 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-01-12 00:41:42,225 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,225 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,225 [ scc.merge] INFO
2026-01-12 00:41:42,225 [ scc.merge] INFO Repository: ome/omero-metadata
2026-01-12 00:41:42,225 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-01-12 00:41:42,226 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Repository: ome/omero-parade
2026-01-12 00:41:42,226 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-01-12 00:41:42,226 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-01-12 00:41:42,226 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Repository: ome/omero-rois
2026-01-12 00:41:42,226 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-12 00:41:42,226 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Repository: ome/omero-signup
2026-01-12 00:41:42,226 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-12 00:41:42,226 [ scc.merge] INFO
2026-01-12 00:41:42,226 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-01-12 00:41:42,226 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-01-12 00:41:42,226 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-01-12 00:41:42,226 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-01-12 00:41:42,227 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Repository: ome/omero-upload
2026-01-12 00:41:42,227 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-01-12 00:41:42,227 [ scc.merge] INFO Updating deab817..160d894
2026-01-12 00:41:42,227 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-01-12 00:41:42,227 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-01-12 00:41:42,227 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-01-12 00:41:42,227 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-01-12 00:41:42,227 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-01-12 00:41:42,227 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Merged PRs:
2026-01-12 00:41:42,227 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,227 [ scc.merge] INFO
2026-01-12 00:41:42,227 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-01-12 00:41:42,227 [ scc.merge] INFO Already up to date.
2026-01-12 00:41:42,228 [ scc.merge] INFO
2026-01-12 00:41:42,228 [ scc.merge] INFO
2026-01-12 00:41:42,228 [ scc.merge] INFO Repository: ome/scripts
2026-01-12 00:41:42,228 [ scc.merge] INFO Excluded PRs:
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-01-12 00:41:42,228 [ scc.merge] INFO Updating 4b4c755..fb91f15
2026-01-12 00:41:42,228 [ scc.merge] INFO Previously merged:
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-01-12 00:41:42,228 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-01-12 00:41:42,228 [ scc.merge] INFO
2026-01-12 00:41:42,228 [ scc.merge] INFO
2026-01-12 00:41:42,228 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-12 00:41:42,228 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-01-12 00:41:42,230 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-01-12 00:41:42,232 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-01-12 00:41:42,234 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-01-12 00:41:42,237 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-01-12 00:41:42,239 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-01-12 00:41:42,241 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-01-12 00:41:42,243 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-01-12 00:41:42,245 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-12 00:41:42,247 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-12 00:41:42,249 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-12 00:41:42,251 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-12 00:41:42,253 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-12 00:41:42,255 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-12 00:41:42,258 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-12 00:41:42,260 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-12 00:41:42,262 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-12 00:41:42,264 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-12 00:41:42,266 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-12 00:41:42,268 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-12 00:41:42,270 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-12 00:41:42,272 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-12 00:41:42,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-12 00:41:42,274 [ scc.git] DEBUG Calling 'git remote'
2026-01-12 00:41:42,276 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 7607fd9] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD e010499] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-01-12 00:42:29,185 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-01-12 00:42:38,553 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-01-12 00:42:41,072 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-12 00:42:45,792 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-12 00:43:24,497 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
