Console Output
Skipping 214 KB..
Full Logit merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-07-27 01:36:21,844 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-07-27 01:36:21,844 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-07-27 01:36:21,875 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-07-27 01:36:21,876 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-07-27 01:36:21,905 [ scc.git] DEBUG Calling 'git reset --hard 4eb1a9058e80b8bc328a35ee2ccfad8188374009'
2026-07-27 01:36:22,051 [ scc.git] DEBUG HEAD is now at 4eb1a90 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-07-27 01:36:22,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:22,242 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-07-27 01:36:22,261 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-07-27 01:36:22,280 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#20](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-07-27 01:36:22,292 [ scc.config] DEBUG Found github.token
2026-07-27 01:36:22,292 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-07-27 01:36:22,292 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:36:22,400 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:22,400 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:22,414 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:36:22,529 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:36:22,601 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e3335550> has no local changes
2026-07-27 01:36:22,601 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:36:22,748 [ scc.git] DEBUG [detached HEAD 58c2ade] merge master -Dorg -Ssuccess-only
2026-07-27 01:36:22,751 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:36:22,751 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:36:23,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-07-27 01:36:23,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-07-27 01:36:24,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-07-27 01:36:24,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:25,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:25,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:26,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:26,096 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-07-27 01:36:26,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-07-27 01:36:27,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-07-27 01:36:27,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:28,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:28,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:29,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:29,104 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-07-27 01:36:29,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-07-27 01:36:30,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-07-27 01:36:30,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:31,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:31,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:32,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:32,376 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-07-27 01:36:32,376 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:36:32,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-07-27 01:36:32,377 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:32,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:32,398 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:36:32,416 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:36:32,416 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:36:32,438 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:36:32,581 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-07-27 01:36:33,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-07-27 01:36:33,282 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-07-27 01:36:33,874 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-07-27 01:36:33,874 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-07-27 01:36:33,898 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-07-27 01:36:34,576 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-07-27 01:36:34,576 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-07-27 01:36:34,602 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-07-27 01:36:35,016 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-07-27 01:36:35,016 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-07-27 01:36:35,042 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:36:35,042 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:35,043 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:35,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-07-27 01:36:35,096 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:35,109 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-07-27 01:36:35,361 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-07-27 01:36:35,361 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-07-27 01:36:35,361 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-07-27 01:36:35,361 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-07-27 01:36:35,384 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-07-27 01:36:35,385 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-07-27 01:36:35,407 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-07-27 01:36:35,541 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-07-27 01:36:35,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:35,729 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-07-27 01:36:35,761 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-07-27 01:36:35,778 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#20](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-07-27 01:36:35,788 [ scc.config] DEBUG Found github.token
2026-07-27 01:36:35,788 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-07-27 01:36:35,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-07-27 01:36:35,827 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:35,840 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-07-27 01:36:36,061 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-07-27 01:36:36,061 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-07-27 01:36:36,061 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-07-27 01:36:36,082 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-07-27 01:36:36,084 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-07-27 01:36:36,113 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-07-27 01:36:36,259 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-07-27 01:36:36,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:36,451 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-07-27 01:36:36,492 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-07-27 01:36:36,514 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#20](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-07-27 01:36:36,528 [ scc.config] DEBUG Found github.token
2026-07-27 01:36:36,528 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-07-27 01:36:36,528 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-07-27 01:36:36,557 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:36,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-07-27 01:36:36,755 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:36:36,817 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-07-27 01:36:36,817 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-07-27 01:36:37,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:37,010 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:36:37,132 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:37,132 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:37,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:36:37,242 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:36:37,303 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e32fbb10> has no local changes
2026-07-27 01:36:37,303 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:36:37,453 [ scc.git] DEBUG [detached HEAD 88ef6a9] merge master -Dorg -Ssuccess-only
2026-07-27 01:36:37,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:36:37,455 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:36:37,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-07-27 01:36:38,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-07-27 01:36:39,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:39,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:40,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:40,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:40,534 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:36:41,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-07-27 01:36:41,056 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:36:41,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:42,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:42,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:43,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:43,207 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-07-27 01:36:43,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-07-27 01:36:43,699 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:36:44,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:44,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:45,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:45,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:45,952 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-07-27 01:36:46,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-07-27 01:36:46,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-07-27 01:36:47,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-07-27 01:36:47,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-07-27 01:36:48,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-07-27 01:36:48,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-07-27 01:36:49,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-07-27 01:36:49,348 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:36:49,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-07-27 01:36:49,350 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:49,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:49,372 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:36:49,390 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:36:49,390 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:36:49,409 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:36:49,471 [ scc.git] DEBUG Already up to date.
2026-07-27 01:36:49,471 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-07-27 01:36:49,926 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-07-27 01:36:49,927 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-07-27 01:36:49,952 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-07-27 01:36:50,349 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-07-27 01:36:50,349 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-07-27 01:36:50,371 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-07-27 01:36:50,797 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-07-27 01:36:50,797 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-07-27 01:36:50,820 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:36:50,820 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:50,820 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:50,835 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-07-27 01:36:50,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:50,867 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-07-27 01:36:51,176 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:36:51,249 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-07-27 01:36:51,249 [ scc.git] DEBUG package.json | 2 +-
2026-07-27 01:36:51,249 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-07-27 01:36:51,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:51,430 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-07-27 01:36:51,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:51,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-07-27 01:36:51,671 [ scc.git] DEBUG Auto-merging package-lock.json
2026-07-27 01:36:51,671 [ scc.git] DEBUG Auto-merging package.json
2026-07-27 01:36:51,746 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:36:51,817 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-07-27 01:36:51,817 [ scc.git] DEBUG package.json | 2 +-
2026-07-27 01:36:51,817 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-07-27 01:36:52,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:52,030 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-07-27 01:36:52,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:52,088 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-07-27 01:36:52,315 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:36:52,393 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:36:52,393 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:36:52,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:52,569 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:36:52,681 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:52,681 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:52,697 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:36:52,816 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:36:52,890 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e3359bd0> has no local changes
2026-07-27 01:36:52,890 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:36:53,053 [ scc.git] DEBUG [detached HEAD f47fc2e] merge master -Dorg -Ssuccess-only
2026-07-27 01:36:53,054 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:36:53,054 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:36:53,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-07-27 01:36:53,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-07-27 01:36:53,972 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:36:54,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:55,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:36:55,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:36:56,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-07-27 01:36:56,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:36:56,700 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:36:56,700 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:36:56,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-07-27 01:36:56,701 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:56,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:56,722 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:36:56,743 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:36:56,743 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:36:56,765 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:36:56,829 [ scc.git] DEBUG Already up to date.
2026-07-27 01:36:56,829 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-07-27 01:36:57,275 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-07-27 01:36:57,275 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-07-27 01:36:57,303 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:36:57,303 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:57,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:57,319 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-07-27 01:36:57,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:57,358 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-07-27 01:36:57,556 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:36:57,635 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:36:57,635 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:36:57,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:36:57,820 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:36:57,961 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:57,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:57,978 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:36:58,078 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:36:58,125 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e33639d0> has no local changes
2026-07-27 01:36:58,125 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:36:58,318 [ scc.git] DEBUG [detached HEAD 48ca445] merge master -Dorg -Ssuccess-only
2026-07-27 01:36:58,320 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:36:58,320 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:36:58,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-07-27 01:36:59,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-07-27 01:36:59,269 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:36:59,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-07-27 01:36:59,270 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:36:59,270 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:36:59,293 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:36:59,315 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:36:59,315 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:36:59,358 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:36:59,578 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-07-27 01:37:00,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-07-27 01:37:01,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-07-27 01:37:01,084 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:01,084 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:01,084 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:01,103 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:01,211 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:01,211 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:01,226 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:01,322 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:01,383 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e33617d0> has no local changes
2026-07-27 01:37:01,383 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:01,524 [ scc.git] DEBUG [detached HEAD 48f212a] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:01,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:01,526 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:01,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-07-27 01:37:02,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-07-27 01:37:02,405 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:37:03,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:03,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:04,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:04,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:05,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:05,012 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:37:05,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-07-27 01:37:06,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-07-27 01:37:06,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:07,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:07,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:08,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:08,235 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-07-27 01:37:08,235 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:08,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-07-27 01:37:08,237 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:08,237 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:08,257 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:08,273 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:08,273 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:08,291 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:08,357 [ scc.git] DEBUG Already up to date.
2026-07-27 01:37:08,357 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-07-27 01:37:08,955 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-07-27 01:37:08,955 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-07-27 01:37:08,983 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-07-27 01:37:09,376 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-07-27 01:37:09,376 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-07-27 01:37:09,398 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:09,398 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:09,398 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:09,411 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-07-27 01:37:09,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:09,450 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-07-27 01:37:09,736 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG Auto-merging setup.py
2026-07-27 01:37:09,737 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-07-27 01:37:09,759 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-07-27 01:37:09,761 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-07-27 01:37:09,796 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-07-27 01:37:09,962 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-07-27 01:37:10,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:10,140 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-07-27 01:37:10,169 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-07-27 01:37:10,188 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#20](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2026-07-27 01:37:10,200 [ scc.config] DEBUG Found github.token
2026-07-27 01:37:10,200 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-07-27 01:37:10,200 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-07-27 01:37:10,220 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:10,234 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-07-27 01:37:10,391 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:10,465 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:37:10,465 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:37:10,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:10,646 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:10,759 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:10,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:10,772 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:10,875 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:10,939 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e339f390> has no local changes
2026-07-27 01:37:10,939 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:11,065 [ scc.git] DEBUG [detached HEAD a2b9bb4] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:11,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:11,067 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:11,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-07-27 01:37:11,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-07-27 01:37:12,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-07-27 01:37:12,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-07-27 01:37:13,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:14,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:14,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:14,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:14,965 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-07-27 01:37:14,965 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:14,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-07-27 01:37:14,966 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:14,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:14,984 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:15,000 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:15,000 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:15,020 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:15,185 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-07-27 01:37:15,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-07-27 01:37:16,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-07-27 01:37:17,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-07-27 01:37:17,552 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-07-27 01:37:18,046 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-07-27 01:37:18,046 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-07-27 01:37:18,075 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:18,075 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:18,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:18,091 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-07-27 01:37:18,123 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:18,137 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-07-27 01:37:18,342 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-07-27 01:37:18,423 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:18,512 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-07-27 01:37:18,512 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-07-27 01:37:18,512 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-07-27 01:37:18,512 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-07-27 01:37:18,512 [ scc.git] DEBUG ms/test | 2 ++
2026-07-27 01:37:18,512 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-07-27 01:37:18,512 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-07-27 01:37:18,512 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-07-27 01:37:18,512 [ scc.git] DEBUG create mode 100755 ms/test
2026-07-27 01:37:18,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:18,731 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:18,857 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:18,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:18,872 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:18,975 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:19,049 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e331e950> has no local changes
2026-07-27 01:37:19,049 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:19,177 [ scc.git] DEBUG [detached HEAD 939db0e] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:19,178 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:19,178 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:19,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-07-27 01:37:20,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-07-27 01:37:20,003 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:37:20,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:21,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:21,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:22,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:22,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:22,632 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:37:22,632 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:22,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-07-27 01:37:22,633 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:22,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:22,655 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:22,674 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:22,674 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:22,697 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:22,756 [ scc.git] DEBUG Already up to date.
2026-07-27 01:37:22,756 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-07-27 01:37:23,166 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-07-27 01:37:23,166 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-07-27 01:37:23,187 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:23,188 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:23,188 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:23,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-07-27 01:37:23,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:23,239 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-07-27 01:37:23,412 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:23,490 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:37:23,490 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:37:23,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:23,699 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:23,816 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:23,816 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:23,830 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:23,936 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:23,987 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e3379910> has no local changes
2026-07-27 01:37:23,987 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:24,122 [ scc.git] DEBUG [detached HEAD 6666d20] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:24,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:24,124 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:24,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-07-27 01:37:24,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-07-27 01:37:24,890 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:37:25,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:26,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:26,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:27,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:27,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:27,581 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:37:27,581 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:27,581 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-07-27 01:37:27,582 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:27,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:27,601 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:27,619 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:27,619 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:27,644 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:27,814 [ scc.git] DEBUG Updating deab817..160d894
2026-07-27 01:37:28,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-07-27 01:37:28,816 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-07-27 01:37:29,241 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-07-27 01:37:29,241 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-07-27 01:37:29,269 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:29,269 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:29,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:29,288 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-07-27 01:37:29,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:29,330 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-07-27 01:37:29,595 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:29,677 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:37:29,677 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:37:29,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:29,874 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:30,001 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:30,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:30,016 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:30,132 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:30,195 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e0198d90> has no local changes
2026-07-27 01:37:30,195 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:30,325 [ scc.git] DEBUG [detached HEAD 86f3924] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:30,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:30,327 [ scc.git] INFO Overriding base-branch from master to main
2026-07-27 01:37:30,328 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:30,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-07-27 01:37:31,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-07-27 01:37:31,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-07-27 01:37:32,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:32,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:33,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:33,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:34,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:34,358 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-07-27 01:37:34,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-07-27 01:37:35,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-07-27 01:37:35,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-07-27 01:37:36,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:36,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:37,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:37,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:37,878 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-07-27 01:37:37,878 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:37,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-07-27 01:37:37,879 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:37,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:37,904 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-07-27 01:37:37,925 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:37,925 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-07-27 01:37:37,949 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-07-27 01:37:38,110 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-07-27 01:37:38,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-07-27 01:37:39,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-07-27 01:37:39,550 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-07-27 01:37:40,071 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-07-27 01:37:40,072 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-07-27 01:37:40,098 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-07-27 01:37:40,752 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-07-27 01:37:40,752 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-07-27 01:37:40,776 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:40,776 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:40,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:40,799 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-07-27 01:37:40,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:40,848 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-07-27 01:37:41,046 [ scc.git] DEBUG Auto-merging README.rst
2026-07-27 01:37:41,046 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-07-27 01:37:41,046 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-07-27 01:37:41,046 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-07-27 01:37:41,071 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-07-27 01:37:41,072 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-07-27 01:37:41,108 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-07-27 01:37:41,266 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-07-27 01:37:41,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:41,462 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-07-27 01:37:41,485 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-07-27 01:37:41,502 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#20](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-07-27 01:37:41,513 [ scc.config] DEBUG Found github.token
2026-07-27 01:37:41,513 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-07-27 01:37:41,513 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-07-27 01:37:41,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:41,563 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-07-27 01:37:41,764 [ scc.git] DEBUG Auto-merging README.rst
2026-07-27 01:37:41,765 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-07-27 01:37:41,831 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:41,901 [ scc.git] DEBUG README.rst | 3 +
2026-07-27 01:37:41,901 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-07-27 01:37:41,901 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-07-27 01:37:41,901 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-07-27 01:37:41,901 [ scc.git] DEBUG setup.py | 5 +-
2026-07-27 01:37:41,901 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-07-27 01:37:41,901 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-07-27 01:37:42,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:42,092 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:42,208 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:42,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:42,223 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:42,340 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:42,410 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e3529090> has no local changes
2026-07-27 01:37:42,410 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:42,542 [ scc.git] DEBUG [detached HEAD d96bf91] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:42,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:42,544 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:42,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-07-27 01:37:43,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-07-27 01:37:43,316 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:37:43,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:44,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:44,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:45,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:45,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:45,975 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:37:45,975 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:45,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-07-27 01:37:45,976 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:45,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:45,997 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:46,015 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:46,015 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:46,036 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:46,098 [ scc.git] DEBUG Already up to date.
2026-07-27 01:37:46,098 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-07-27 01:37:46,516 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-07-27 01:37:46,516 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-07-27 01:37:46,573 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:46,573 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:46,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:46,589 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-07-27 01:37:46,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:46,625 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-07-27 01:37:46,810 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:46,890 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:37:46,890 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:37:47,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:47,079 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:47,202 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:47,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:47,217 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:47,316 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:47,370 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e0185710> has no local changes
2026-07-27 01:37:47,370 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:47,492 [ scc.git] DEBUG [detached HEAD d707a58] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:47,494 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:47,494 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:47,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-07-27 01:37:48,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-07-27 01:37:48,267 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-27 01:37:49,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:49,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:50,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:50,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:51,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:51,231 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:37:51,231 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:51,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-07-27 01:37:51,232 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:51,232 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:51,260 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:51,280 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:51,280 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:51,304 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:51,362 [ scc.git] DEBUG Already up to date.
2026-07-27 01:37:51,362 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-07-27 01:37:51,803 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-07-27 01:37:51,804 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-07-27 01:37:51,828 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:51,828 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:51,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:51,846 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-07-27 01:37:51,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:51,885 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-07-27 01:37:52,123 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:37:52,197 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-07-27 01:37:52,197 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-27 01:37:52,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:37:52,394 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:52,502 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:52,502 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:52,516 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:52,630 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:52,687 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e01a3fd0> has no local changes
2026-07-27 01:37:52,687 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:52,807 [ scc.git] DEBUG [detached HEAD 4a35cff] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:52,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:52,809 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:53,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-07-27 01:37:53,033 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:53,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-07-27 01:37:53,034 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:53,034 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:53,056 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-27 01:37:53,077 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:53,077 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-27 01:37:53,101 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-27 01:37:53,164 [ scc.git] DEBUG Already up to date.
2026-07-27 01:37:53,164 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:37:53,164 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:53,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:53,181 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:37:53,305 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:53,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:53,321 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:37:53,437 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:37:53,547 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e01a6050> has no local changes
2026-07-27 01:37:53,547 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:37:53,702 [ scc.git] DEBUG [detached HEAD 5939a42] merge master -Dorg -Ssuccess-only
2026-07-27 01:37:53,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:37:53,704 [ scc.git] INFO Overriding base-branch from master to develop
2026-07-27 01:37:53,704 [ scc.repo] DEBUG ## PRs found:
2026-07-27 01:37:54,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-07-27 01:37:54,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-07-27 01:37:54,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:55,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-27 01:37:55,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-07-27 01:37:56,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-07-27 01:37:56,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-07-27 01:37:56,889 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-07-27 01:37:56,889 [ scc.repo] DEBUG ## Branches found:
2026-07-27 01:37:56,889 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-07-27 01:37:56,890 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:37:56,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:37:56,911 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-07-27 01:37:56,940 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-27 01:37:56,940 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-07-27 01:37:56,980 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-07-27 01:37:57,278 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-07-27 01:37:57,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-07-27 01:37:58,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-07-27 01:37:59,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-07-27 01:38:00,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-07-27 01:38:00,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-07-27 01:38:01,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-07-27 01:38:02,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-07-27 01:38:02,788 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-07-27 01:38:03,393 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-07-27 01:38:03,393 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-07-27 01:38:03,416 [ scc.git] DEBUG ## Unique users: []
2026-07-27 01:38:03,416 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:38:03,416 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:38:03,433 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-07-27 01:38:03,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:38:03,485 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-07-27 01:38:03,697 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-27 01:38:03,767 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-07-27 01:38:03,767 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-07-27 01:38:03,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:03,964 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-27 01:38:04,084 [ scc.git] DEBUG Get sha1 of %s
2026-07-27 01:38:04,084 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-27 01:38:04,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:38:04,198 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:38:04,260 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e32e28d0> has no local changes
2026-07-27 01:38:04,260 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:38:04,388 [ scc.git] DEBUG [detached HEAD 1c9d2e1] merge master -Dorg -Ssuccess-only
2026-07-27 01:38:04,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:04,389 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-27 01:38:04,610 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-07-27 01:38:04,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:04,825 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-07-27 01:38:04,833 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-07-27 01:38:05,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:05,260 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-07-27 01:38:05,269 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-07-27 01:38:05,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:05,698 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-07-27 01:38:05,706 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-07-27 01:38:06,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:06,143 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-07-27 01:38:06,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:06,641 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-07-27 01:38:06,649 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-07-27 01:38:07,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:07,104 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-07-27 01:38:07,111 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-07-27 01:38:07,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:07,562 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-07-27 01:38:07,569 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-07-27 01:38:08,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:08,067 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-07-27 01:38:08,075 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-07-27 01:38:08,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:08,525 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-07-27 01:38:08,533 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-07-27 01:38:08,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:08,973 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-07-27 01:38:08,980 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-07-27 01:38:09,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:09,673 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-07-27 01:38:09,681 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-07-27 01:38:10,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:10,258 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-07-27 01:38:10,266 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-07-27 01:38:10,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:10,711 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-07-27 01:38:11,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:11,161 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-07-27 01:38:11,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:11,602 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-07-27 01:38:11,611 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-07-27 01:38:12,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:12,052 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-07-27 01:38:12,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:12,493 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-07-27 01:38:12,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:12,947 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-07-27 01:38:12,956 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-07-27 01:38:13,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:13,375 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-07-27 01:38:13,384 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-07-27 01:38:13,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:13,973 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-07-27 01:38:13,981 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-07-27 01:38:14,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:14,422 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-07-27 01:38:14,430 [ scc.config] DEBUG Found submodule.scripts.url
2026-07-27 01:38:14,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-27 01:38:14,883 [ scc.config] DEBUG Found submodule.scripts.branch
2026-07-27 01:38:14,883 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-27 01:38:16,860 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa8e3540f10> has local changes
2026-07-27 01:38:16,861 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 196 will-moore 'Storage options only if needed'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Updating 9cc36cde..18887279
Previously merged:
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 692 will-moore 'colorbar lut background fix'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 696 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.12'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..cae0b026
Previously merged:
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 543 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.5'
- PR 546 will-moore 'Use POST data for saveImgRdef params'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
- PR 544 dependabot[bot] 'Bump js-yaml, mocha and eslint'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.3 to 1.10.0'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#20 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/20/)'
2026-07-27 01:38:17,410 [ scc.git] DEBUG [detached HEAD eb78263] merge master -Dorg -Ssuccess-only
2026-07-27 01:38:17,410 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-07-27 01:38:17,411 [ scc.merge] INFO Repository: ome/omero-plugins
2026-07-27 01:38:17,412 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-07-27 01:38:17,412 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-07-27 01:38:17,412 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-07-27 01:38:17,412 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-07-27 01:38:17,412 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-07-27 01:38:17,412 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-07-27 01:38:17,412 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-07-27 01:38:17,412 [ scc.merge] INFO
2026-07-27 01:38:17,412 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-07-27 01:38:17,412 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-07-27 01:38:17,412 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-07-27 01:38:17,412 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-07-27 01:38:17,412 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:38:17,413 [ scc.merge] INFO
2026-07-27 01:38:17,413 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-07-27 01:38:17,413 [ scc.merge] INFO
2026-07-27 01:38:17,413 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-07-27 01:38:17,413 [ scc.merge] INFO
2026-07-27 01:38:17,413 [ scc.merge] INFO Repository: ome/omero-figure
2026-07-27 01:38:17,413 [ scc.merge] INFO Updating 9cc36cde..18887279
2026-07-27 01:38:17,413 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-07-27 01:38:17,413 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 696 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.12'
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-07-27 01:38:17,414 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Repository: ome/omero-gallery
2026-07-27 01:38:17,414 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-07-27 01:38:17,414 [ scc.merge] INFO
2026-07-27 01:38:17,414 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-07-27 01:38:17,414 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-07-27 01:38:17,414 [ scc.merge] INFO Updating 7a798cee..cae0b026
2026-07-27 01:38:17,414 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-07-27 01:38:17,414 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:38:17,415 [ scc.merge] INFO
2026-07-27 01:38:17,415 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 543 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.5'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 546 will-moore 'Use POST data for saveImgRdef params'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-07-27 01:38:17,415 [ scc.merge] INFO
2026-07-27 01:38:17,415 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 544 dependabot[bot] 'Bump js-yaml, mocha and eslint'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.3 to 1.10.0'
2026-07-27 01:38:17,415 [ scc.merge] INFO
2026-07-27 01:38:17,415 [ scc.merge] INFO Repository: ome/omero-mapr
2026-07-27 01:38:17,415 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-07-27 01:38:17,415 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,415 [ scc.merge] INFO
2026-07-27 01:38:17,415 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:38:17,415 [ scc.merge] INFO
2026-07-27 01:38:17,415 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,415 [ scc.merge] INFO
2026-07-27 01:38:17,415 [ scc.merge] INFO Repository: ome/omero-metadata
2026-07-27 01:38:17,415 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-07-27 01:38:17,415 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,415 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Repository: ome/omero-parade
2026-07-27 01:38:17,416 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-07-27 01:38:17,416 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-07-27 01:38:17,416 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Repository: ome/omero-rois
2026-07-27 01:38:17,416 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-07-27 01:38:17,416 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-07-27 01:38:17,416 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Repository: ome/omero-signup
2026-07-27 01:38:17,416 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,416 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-07-27 01:38:17,416 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-07-27 01:38:17,416 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-07-27 01:38:17,416 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-07-27 01:38:17,416 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-07-27 01:38:17,416 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: ome/omero-upload
2026-07-27 01:38:17,417 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-07-27 01:38:17,417 [ scc.merge] INFO Updating deab817..160d894
2026-07-27 01:38:17,417 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-07-27 01:38:17,417 [ scc.merge] INFO Excluded PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-07-27 01:38:17,417 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-07-27 01:38:17,417 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Conflicting PRs (not included):
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-07-27 01:38:17,417 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-07-27 01:38:17,417 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-07-27 01:38:17,417 [ scc.merge] INFO Already up to date.
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO
2026-07-27 01:38:17,417 [ scc.merge] INFO Repository: ome/scripts
2026-07-27 01:38:17,417 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-07-27 01:38:17,417 [ scc.merge] INFO Previously merged:
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-07-27 01:38:17,417 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-07-27 01:38:17,418 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-07-27 01:38:17,418 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-07-27 01:38:17,418 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-07-27 01:38:17,418 [ scc.merge] INFO
2026-07-27 01:38:17,418 [ scc.merge] INFO Merged PRs:
2026-07-27 01:38:17,418 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-07-27 01:38:17,418 [ scc.merge] INFO
2026-07-27 01:38:17,418 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-07-27 01:38:17,418 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,431 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-07-27 01:38:17,431 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-07-27 01:38:17,444 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-07-27 01:38:17,456 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-07-27 01:38:17,472 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-07-27 01:38:17,487 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-07-27 01:38:17,503 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,517 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,518 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-07-27 01:38:17,518 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,533 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-07-27 01:38:17,534 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-07-27 01:38:17,549 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,564 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,564 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-07-27 01:38:17,564 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-07-27 01:38:17,580 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-07-27 01:38:17,594 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-07-27 01:38:17,609 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-07-27 01:38:17,624 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-07-27 01:38:17,641 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-07-27 01:38:17,656 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-07-27 01:38:17,671 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-07-27 01:38:17,685 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-07-27 01:38:17,700 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-07-27 01:38:17,714 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-07-27 01:38:17,729 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,743 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-07-27 01:38:17,743 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-07-27 01:38:17,743 [ scc.git] DEBUG Calling 'git remote'
2026-07-27 01:38:17,758 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 2cd9c43] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798cee
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 90ffc13] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-07-27 01:39:29,520 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-07-27 01:39:39,671 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-07-27 01:39:42,331 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-07-27 01:39:47,398 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-07-27 01:40:38,772 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
