Console Output
Skipping 176 KB..
Full LogL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:01:59,864 [ scc.git] DEBUG [detached HEAD b084966] merge master -Dorg -Ssuccess-only
2025-12-19 12:01:59,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:01:59,864 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:00,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-12-19 12:02:00,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2025-12-19 12:02:01,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2025-12-19 12:02:01,233 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:02:01,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-19 12:02:02,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:02,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:03,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-19 12:02:03,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:03,835 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:02:04,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-12-19 12:02:04,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-19 12:02:05,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:05,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-19 12:02:06,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:06,271 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:02:06,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-12-19 12:02:07,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-12-19 12:02:07,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-19 12:02:08,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:08,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-19 12:02:09,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:09,253 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-12-19 12:02:09,253 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:02:09,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-19 12:02:09,253 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:09,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:09,256 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:02:09,258 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:02:09,258 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:02:09,261 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:02:09,264 [ scc.git] DEBUG Already up to date.
2025-12-19 12:02:09,264 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-12-19 12:02:09,535 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-19 12:02:09,535 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-12-19 12:02:09,539 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-12-19 12:02:09,810 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-19 12:02:09,810 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-12-19 12:02:09,814 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2025-12-19 12:02:10,070 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-19 12:02:10,070 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2025-12-19 12:02:10,075 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:02:10,075 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:10,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:10,077 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-19 12:02:10,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:10,083 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-19 12:02:10,090 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:10,093 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-12-19 12:02:10,093 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-12-19 12:02:10,093 [ scc.git] DEBUG requirements.txt | 2 +-
2025-12-19 12:02:10,093 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-12-19 12:02:10,093 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-12-19 12:02:10,093 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-12-19 12:02:10,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:10,260 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-19 12:02:10,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:10,266 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-19 12:02:10,274 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:10,276 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:02:10,276 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:02:10,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:10,656 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-19 12:02:10,659 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:10,661 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-19 12:02:10,668 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2025-12-19 12:02:10,668 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2025-12-19 12:02:10,669 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-19 12:02:10,669 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-19 12:02:10,671 [ scc.git] DEBUG Calling 'git reset --hard 1c9f0bd15e7606567738d658f80a75359c7afee4'
2025-12-19 12:02:10,675 [ scc.git] DEBUG HEAD is now at 1c9f0bd merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2025-12-19 12:02:11,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:11,052 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-19 12:02:11,055 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2025-12-19 12:02:11,058 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#4](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2025-12-19 12:02:11,060 [ scc.config] DEBUG Found github.token
2025-12-19 12:02:11,060 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2025-12-19 12:02:11,060 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:02:11,097 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:11,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:11,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:02:11,136 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:02:11,139 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1cd62d0> has no local changes
2025-12-19 12:02:11,139 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:02:11,145 [ scc.git] DEBUG [detached HEAD 500f884] merge master -Dorg -Ssuccess-only
2025-12-19 12:02:11,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:02:11,145 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:11,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-12-19 12:02:12,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-12-19 12:02:12,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-12-19 12:02:13,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-19 12:02:13,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:14,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-19 12:02:14,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:14,611 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-19 12:02:15,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-12-19 12:02:15,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-12-19 12:02:16,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-19 12:02:16,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:17,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-19 12:02:17,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:17,555 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-19 12:02:17,555 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:02:17,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-19 12:02:17,556 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:17,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:17,558 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:02:17,561 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:02:17,561 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:02:17,563 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:02:17,570 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-12-19 12:02:18,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-12-19 12:02:18,239 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-12-19 12:02:18,513 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-19 12:02:18,513 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-12-19 12:02:18,517 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-12-19 12:02:18,778 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-19 12:02:18,778 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-12-19 12:02:18,782 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:02:18,782 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:18,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:18,784 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-19 12:02:18,788 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:18,790 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-19 12:02:18,802 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-12-19 12:02:18,802 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-12-19 12:02:18,802 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-19 12:02:18,802 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-19 12:02:18,802 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-19 12:02:18,802 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-19 12:02:18,805 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-19 12:02:18,809 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-19 12:02:18,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:18,981 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-19 12:02:18,985 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-19 12:02:18,988 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#4](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-12-19 12:02:18,990 [ scc.config] DEBUG Found github.token
2025-12-19 12:02:18,990 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-12-19 12:02:18,990 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-19 12:02:18,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:18,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-19 12:02:19,010 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-19 12:02:19,010 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-19 12:02:19,010 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-12-19 12:02:19,010 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-19 12:02:19,010 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-19 12:02:19,013 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-19 12:02:19,017 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-19 12:02:19,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:19,375 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-19 12:02:19,379 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-19 12:02:19,382 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#4](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-12-19 12:02:19,384 [ scc.config] DEBUG Found github.token
2025-12-19 12:02:19,384 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-12-19 12:02:19,384 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:02:19,421 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:19,421 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:19,423 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:02:19,459 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:02:19,463 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef2ed7850> has no local changes
2025-12-19 12:02:19,463 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:02:19,469 [ scc.git] DEBUG [detached HEAD 736c52b] merge master -Dorg -Ssuccess-only
2025-12-19 12:02:19,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:02:19,470 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:19,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-12-19 12:02:20,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-12-19 12:02:20,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-19 12:02:21,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:22,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:22,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-19 12:02:22,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:22,929 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:02:23,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-12-19 12:02:23,440 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:02:23,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-19 12:02:24,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:25,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:25,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-19 12:02:26,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:26,016 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-19 12:02:26,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-12-19 12:02:26,560 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:02:27,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-19 12:02:27,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:28,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:28,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-19 12:02:29,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:29,084 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-19 12:02:29,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-12-19 12:02:30,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-12-19 12:02:30,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-12-19 12:02:31,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-12-19 12:02:31,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-12-19 12:02:32,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-12-19 12:02:32,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-12-19 12:02:32,465 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:02:32,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-19 12:02:32,465 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:32,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:32,468 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:02:32,470 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:02:32,470 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:02:32,473 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:02:32,476 [ scc.git] DEBUG Already up to date.
2025-12-19 12:02:32,476 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-12-19 12:02:32,739 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-19 12:02:32,740 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-12-19 12:02:32,744 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-12-19 12:02:33,007 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-19 12:02:33,007 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-12-19 12:02:33,011 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-12-19 12:02:33,263 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-19 12:02:33,263 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-12-19 12:02:33,267 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:02:33,267 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:33,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:33,270 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-19 12:02:33,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:33,275 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-19 12:02:33,282 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:33,285 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-12-19 12:02:33,285 [ scc.git] DEBUG package.json | 2 +-
2025-12-19 12:02:33,285 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-12-19 12:02:33,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:33,455 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-12-19 12:02:33,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:33,460 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-12-19 12:02:33,469 [ scc.git] DEBUG Auto-merging package-lock.json
2025-12-19 12:02:33,470 [ scc.git] DEBUG Auto-merging package.json
2025-12-19 12:02:33,470 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:33,474 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-12-19 12:02:33,474 [ scc.git] DEBUG package.json | 2 +-
2025-12-19 12:02:33,474 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-12-19 12:02:33,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:33,847 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-19 12:02:33,850 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:33,852 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-19 12:02:33,860 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:33,863 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:02:33,864 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:02:34,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:34,255 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:02:34,293 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:34,293 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:34,295 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:02:34,332 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:02:34,336 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1cc9d50> has no local changes
2025-12-19 12:02:34,336 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:02:34,342 [ scc.git] DEBUG [detached HEAD a153d1f] merge master -Dorg -Ssuccess-only
2025-12-19 12:02:34,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:02:34,342 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:34,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-12-19 12:02:35,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-12-19 12:02:35,245 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:02:35,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-19 12:02:36,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:36,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:37,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-19 12:02:37,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:37,686 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:02:37,686 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:02:37,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-19 12:02:37,686 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:37,686 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:37,689 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:02:37,692 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:02:37,692 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:02:37,695 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:02:37,698 [ scc.git] DEBUG Already up to date.
2025-12-19 12:02:37,698 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-12-19 12:02:37,976 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-12-19 12:02:37,976 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-12-19 12:02:37,980 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:02:37,980 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:37,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:37,982 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-19 12:02:37,985 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:37,987 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-19 12:02:37,994 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:37,996 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:02:37,996 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:02:38,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:38,142 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:02:38,180 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:38,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:38,182 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:02:38,219 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:02:38,222 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1ce3e10> has no local changes
2025-12-19 12:02:38,222 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:02:38,228 [ scc.git] DEBUG [detached HEAD 6192f9a] merge master -Dorg -Ssuccess-only
2025-12-19 12:02:38,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:02:38,229 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:38,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-12-19 12:02:39,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-12-19 12:02:39,217 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:02:39,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-19 12:02:40,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:40,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:41,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-19 12:02:41,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:42,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-19 12:02:43,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-12-19 12:02:43,001 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:02:43,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-12-19 12:02:44,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-12-19 12:02:44,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-19 12:02:45,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:46,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:46,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-19 12:02:47,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:47,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-19 12:02:47,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-12-19 12:02:47,999 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-12-19 12:02:48,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-12-19 12:02:48,490 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:02:48,490 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-19 12:02:48,490 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:48,490 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:48,493 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:02:48,495 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:02:48,495 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:02:48,498 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:02:48,501 [ scc.git] DEBUG Already up to date.
2025-12-19 12:02:48,501 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-12-19 12:02:48,770 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-19 12:02:48,770 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-12-19 12:02:48,775 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-12-19 12:02:49,034 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-19 12:02:49,034 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-12-19 12:02:49,039 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:02:49,039 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:49,040 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:49,042 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-19 12:02:49,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:49,047 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-19 12:02:49,054 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:49,056 [ scc.git] DEBUG setup.py | 4 +-
2025-12-19 12:02:49,056 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-12-19 12:02:49,057 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-12-19 12:02:49,057 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-12-19 12:02:49,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:49,206 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-12-19 12:02:49,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:49,211 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-12-19 12:02:49,218 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:49,220 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:02:49,220 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:02:49,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:49,603 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:02:49,641 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:49,641 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:49,643 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:02:49,679 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:02:49,682 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1d3b8d0> has no local changes
2025-12-19 12:02:49,682 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:02:49,688 [ scc.git] DEBUG [detached HEAD bc22772] merge master -Dorg -Ssuccess-only
2025-12-19 12:02:49,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:02:49,688 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:50,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-12-19 12:02:50,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-12-19 12:02:50,678 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:02:51,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-19 12:02:51,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:52,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:02:52,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-19 12:02:53,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:53,234 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:02:53,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-12-19 12:02:54,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-12-19 12:02:54,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-19 12:02:55,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:02:55,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-19 12:02:56,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:02:56,178 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-19 12:02:56,178 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:02:56,178 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-19 12:02:56,178 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:56,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:56,181 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:02:56,183 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:02:56,183 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:02:56,185 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:02:56,188 [ scc.git] DEBUG Already up to date.
2025-12-19 12:02:56,188 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-19 12:02:56,463 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-19 12:02:56,463 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-19 12:02:56,467 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-19 12:02:56,727 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-19 12:02:56,727 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-19 12:02:56,731 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:02:56,731 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:56,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:56,733 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-19 12:02:56,736 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:56,738 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-19 12:02:56,745 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG Auto-merging setup.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-12-19 12:02:56,746 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-19 12:02:56,746 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-19 12:02:56,748 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-19 12:02:56,752 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-12-19 12:02:56,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:56,920 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-19 12:02:56,922 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-19 12:02:56,925 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#4](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/views.py
- setup.py
- omero_signup/urls.py
--conflicts
2025-12-19 12:02:56,927 [ scc.config] DEBUG Found github.token
2025-12-19 12:02:56,927 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-12-19 12:02:56,927 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-19 12:02:56,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:56,932 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-19 12:02:56,938 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:02:56,941 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:02:56,941 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:02:57,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:02:57,326 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:02:57,365 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:02:57,365 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:02:57,367 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:02:57,406 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:02:57,409 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1d24e10> has no local changes
2025-12-19 12:02:57,409 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:02:57,415 [ scc.git] DEBUG [detached HEAD 37ce21b] merge master -Dorg -Ssuccess-only
2025-12-19 12:02:57,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:02:57,415 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:02:57,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-12-19 12:02:58,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-12-19 12:02:58,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-12-19 12:02:59,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2025-12-19 12:02:59,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-12-19 12:03:00,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:00,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:00,898 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:00,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-19 12:03:00,898 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:00,899 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:00,901 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:03:00,903 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:00,903 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:03:00,906 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:03:00,913 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2025-12-19 12:03:01,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2025-12-19 12:03:02,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2025-12-19 12:03:02,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2025-12-19 12:03:02,989 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:02,990 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:02,990 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:02,992 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:03,031 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:03,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:03,034 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:03,070 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:03,073 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef2dc1c90> has no local changes
2025-12-19 12:03:03,073 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:03,079 [ scc.git] DEBUG [detached HEAD 4800479] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:03,079 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:03,079 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:03,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-12-19 12:03:04,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-12-19 12:03:04,048 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:03:04,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-19 12:03:05,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:05,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:06,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-19 12:03:06,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:06,559 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:06,559 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:06,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-19 12:03:06,559 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:06,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:06,562 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:03:06,564 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:06,564 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:03:06,567 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:03:06,570 [ scc.git] DEBUG Already up to date.
2025-12-19 12:03:06,570 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-19 12:03:06,855 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-12-19 12:03:06,855 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-19 12:03:06,860 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:06,860 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:06,860 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:06,862 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-19 12:03:06,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:06,867 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-19 12:03:06,873 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:03:06,876 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:03:06,876 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:03:07,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:07,056 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:07,094 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:07,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:07,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:07,133 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:07,136 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1d13a50> has no local changes
2025-12-19 12:03:07,136 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:07,142 [ scc.git] DEBUG [detached HEAD 381d98e] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:07,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:07,142 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:07,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-12-19 12:03:08,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-12-19 12:03:08,069 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:03:08,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-19 12:03:09,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:09,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:10,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-19 12:03:10,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:10,645 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:10,645 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:10,645 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-19 12:03:10,646 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:10,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:10,648 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:03:10,651 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:10,651 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:03:10,653 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:03:10,659 [ scc.git] DEBUG Updating deab817..160d894
2025-12-19 12:03:11,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-12-19 12:03:11,330 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-19 12:03:11,607 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-12-19 12:03:11,607 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-19 12:03:11,611 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:11,611 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:11,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:11,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-19 12:03:11,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:11,618 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-19 12:03:11,625 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:03:11,627 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:03:11,627 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:03:11,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:11,875 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:11,913 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:11,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:11,915 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:11,952 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:11,955 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1d03590> has no local changes
2025-12-19 12:03:11,956 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:11,961 [ scc.git] DEBUG [detached HEAD 2a535c8] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:11,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:11,961 [ scc.git] INFO Overriding base-branch from master to main
2025-12-19 12:03:11,961 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:12,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-12-19 12:03:12,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-12-19 12:03:13,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-12-19 12:03:13,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-19 12:03:14,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:14,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:15,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-19 12:03:15,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:15,926 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-12-19 12:03:16,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-12-19 12:03:16,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-12-19 12:03:17,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-12-19 12:03:17,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-19 12:03:18,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:18,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-19 12:03:19,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:19,251 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-19 12:03:19,251 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:19,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-19 12:03:19,251 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:19,251 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:19,254 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-12-19 12:03:19,256 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:19,256 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-12-19 12:03:19,259 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-12-19 12:03:19,266 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2025-12-19 12:03:20,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2025-12-19 12:03:20,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-12-19 12:03:20,810 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-12-19 12:03:21,078 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-19 12:03:21,078 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-12-19 12:03:21,082 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-12-19 12:03:21,346 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-19 12:03:21,346 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-12-19 12:03:21,350 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:21,350 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:21,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:21,353 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-19 12:03:21,355 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:21,358 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-19 12:03:21,365 [ scc.git] DEBUG Auto-merging README.rst
2025-12-19 12:03:21,365 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-12-19 12:03:21,365 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-12-19 12:03:21,365 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-19 12:03:21,365 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-19 12:03:21,365 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-19 12:03:21,368 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-19 12:03:21,372 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2025-12-19 12:03:21,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:21,547 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-19 12:03:21,550 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-19 12:03:21,552 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#4](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-12-19 12:03:21,554 [ scc.config] DEBUG Found github.token
2025-12-19 12:03:21,554 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-12-19 12:03:21,554 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-19 12:03:21,557 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:21,559 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-19 12:03:21,567 [ scc.git] DEBUG Auto-merging README.rst
2025-12-19 12:03:21,567 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-19 12:03:21,568 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:03:21,571 [ scc.git] DEBUG README.rst | 3 +
2025-12-19 12:03:21,571 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-12-19 12:03:21,571 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-12-19 12:03:21,571 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-12-19 12:03:21,571 [ scc.git] DEBUG setup.py | 5 +-
2025-12-19 12:03:21,571 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-12-19 12:03:21,571 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-12-19 12:03:21,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:21,951 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:21,991 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:21,991 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:21,993 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:22,031 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:22,034 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef2ee5910> has no local changes
2025-12-19 12:03:22,034 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:22,040 [ scc.git] DEBUG [detached HEAD 98ff2f2] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:22,041 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:22,041 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:22,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-12-19 12:03:22,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-12-19 12:03:22,958 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:03:23,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-19 12:03:24,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:24,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:25,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-19 12:03:25,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:25,606 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:25,606 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:25,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-19 12:03:25,606 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:25,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:25,609 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:03:25,611 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:25,611 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:03:25,614 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:03:25,617 [ scc.git] DEBUG Already up to date.
2025-12-19 12:03:25,617 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-12-19 12:03:25,885 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-12-19 12:03:25,885 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-12-19 12:03:25,889 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:25,889 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:25,889 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:25,891 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-19 12:03:25,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:25,896 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-19 12:03:25,902 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:03:25,905 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:03:25,905 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:03:26,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:26,061 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:26,100 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:26,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:26,103 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:26,142 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:26,145 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1d2a450> has no local changes
2025-12-19 12:03:26,146 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:26,151 [ scc.git] DEBUG [detached HEAD f6784af] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:26,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:26,152 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:26,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-12-19 12:03:27,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-12-19 12:03:27,116 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-19 12:03:27,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-19 12:03:28,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:28,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:29,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-19 12:03:29,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:29,586 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:29,586 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:29,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-19 12:03:29,586 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:29,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:29,589 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:03:29,591 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:29,591 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:03:29,594 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:03:29,597 [ scc.git] DEBUG Already up to date.
2025-12-19 12:03:29,597 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-12-19 12:03:29,859 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-12-19 12:03:29,859 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-12-19 12:03:29,863 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:29,863 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:29,863 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:29,865 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-19 12:03:29,868 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:29,870 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-19 12:03:29,876 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:03:29,879 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-19 12:03:29,879 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-19 12:03:30,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:30,020 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:30,059 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:30,059 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:30,061 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:30,099 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:30,102 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef1d5e850> has no local changes
2025-12-19 12:03:30,102 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:30,108 [ scc.git] DEBUG [detached HEAD cf43cc4] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:30,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:30,108 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:30,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2025-12-19 12:03:30,442 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:30,442 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-19 12:03:30,442 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:30,442 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:30,445 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-19 12:03:30,447 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:30,447 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-19 12:03:30,450 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-19 12:03:30,453 [ scc.git] DEBUG Already up to date.
2025-12-19 12:03:30,453 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:30,453 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:30,453 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:30,455 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:30,494 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:30,494 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:30,497 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:30,535 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:30,538 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef2efed50> has no local changes
2025-12-19 12:03:30,538 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:30,544 [ scc.git] DEBUG [detached HEAD 1ef27c7] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:30,545 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:30,545 [ scc.git] INFO Overriding base-branch from master to develop
2025-12-19 12:03:30,545 [ scc.repo] DEBUG ## PRs found:
2025-12-19 12:03:31,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-12-19 12:03:31,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None
2025-12-19 12:03:31,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-19 12:03:32,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-19 12:03:32,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-19 12:03:33,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-19 12:03:33,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2
2025-12-19 12:03:33,872 [ scc.repo] DEBUG - PR 231 jburel 'Create Release '
2025-12-19 12:03:34,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-12-19 12:03:34,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-12-19 12:03:34,886 [ scc.repo] DEBUG ## Branches found:
2025-12-19 12:03:34,886 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-19 12:03:34,886 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:34,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:34,889 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-12-19 12:03:34,892 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-19 12:03:34,892 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-12-19 12:03:34,895 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-12-19 12:03:34,906 [ scc.git] DEBUG Updating 4b4c755..18a9a75
2025-12-19 12:03:35,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2025-12-19 12:03:36,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2025-12-19 12:03:36,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2025-12-19 12:03:37,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-12-19 12:03:38,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-12-19 12:03:39,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-12-19 12:03:39,015 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head'
2025-12-19 12:03:39,290 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-12-19 12:03:39,290 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD
2025-12-19 12:03:39,294 [ scc.git] DEBUG ## Unique users: []
2025-12-19 12:03:39,294 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:39,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:39,296 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-19 12:03:39,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:39,302 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-19 12:03:39,310 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-19 12:03:39,313 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++----
2025-12-19 12:03:39,313 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-)
2025-12-19 12:03:39,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:39,452 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-19 12:03:39,491 [ scc.git] DEBUG Get sha1 of %s
2025-12-19 12:03:39,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-19 12:03:39,493 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:39,531 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:39,534 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef03a2c90> has no local changes
2025-12-19 12:03:39,534 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:39,540 [ scc.git] DEBUG [detached HEAD b447f32] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:39,541 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:39,541 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-19 12:03:39,611 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-12-19 12:03:39,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:39,858 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-12-19 12:03:39,859 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-12-19 12:03:40,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:40,276 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-12-19 12:03:40,278 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-12-19 12:03:40,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:40,676 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-12-19 12:03:40,678 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-12-19 12:03:41,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:41,081 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-12-19 12:03:41,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:41,475 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-12-19 12:03:41,477 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-12-19 12:03:41,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:41,876 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-12-19 12:03:41,878 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-12-19 12:03:42,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:42,286 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-12-19 12:03:42,288 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-12-19 12:03:42,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:42,696 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-12-19 12:03:42,698 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-12-19 12:03:43,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:43,117 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-12-19 12:03:43,119 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-12-19 12:03:43,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:43,504 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-12-19 12:03:43,506 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-12-19 12:03:43,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:43,906 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-12-19 12:03:43,908 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-12-19 12:03:44,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:44,305 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-12-19 12:03:44,307 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-12-19 12:03:44,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:44,697 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-12-19 12:03:45,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:45,102 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-12-19 12:03:45,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:45,530 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-12-19 12:03:45,532 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-12-19 12:03:45,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:45,936 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-12-19 12:03:46,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:46,343 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-12-19 12:03:46,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:46,758 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-12-19 12:03:46,760 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-12-19 12:03:47,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:47,148 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-12-19 12:03:47,150 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-12-19 12:03:47,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:47,535 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-12-19 12:03:47,537 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-12-19 12:03:47,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:47,943 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-12-19 12:03:47,945 [ scc.config] DEBUG Found submodule.scripts.url
2025-12-19 12:03:48,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-19 12:03:48,340 [ scc.config] DEBUG Found submodule.scripts.branch
2025-12-19 12:03:48,340 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-19 12:03:48,416 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0ef2dd6250> has local changes
2025-12-19 12:03:48,416 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..88b01ef5
Previously merged:
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#4 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/4/)'
2025-12-19 12:03:48,428 [ scc.git] DEBUG [detached HEAD 0714817] merge master -Dorg -Ssuccess-only
2025-12-19 12:03:48,428 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-12-19 12:03:48,428 [ scc.merge] INFO Repository: ome/omero-plugins
2025-12-19 12:03:48,429 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-12-19 12:03:48,429 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-12-19 12:03:48,429 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-12-19 12:03:48,429 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-12-19 12:03:48,429 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-12-19 12:03:48,429 [ scc.merge] INFO Updating ce6e13c..68b7303
2025-12-19 12:03:48,429 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-12-19 12:03:48,429 [ scc.merge] INFO
2025-12-19 12:03:48,429 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-12-19 12:03:48,429 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-12-19 12:03:48,429 [ scc.merge] INFO Updating 11d3587..37ea700
2025-12-19 12:03:48,429 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-12-19 12:03:48,429 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:03:48,430 [ scc.merge] INFO
2025-12-19 12:03:48,430 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2025-12-19 12:03:48,430 [ scc.merge] INFO
2025-12-19 12:03:48,430 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-12-19 12:03:48,430 [ scc.merge] INFO
2025-12-19 12:03:48,430 [ scc.merge] INFO Repository: ome/omero-figure
2025-12-19 12:03:48,430 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-12-19 12:03:48,430 [ scc.merge] INFO Updating 9cc36cde..88b01ef5
2025-12-19 12:03:48,430 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:03:48,430 [ scc.merge] INFO
2025-12-19 12:03:48,430 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2025-12-19 12:03:48,430 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-12-19 12:03:48,431 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Repository: ome/omero-gallery
2025-12-19 12:03:48,431 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-12-19 12:03:48,431 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-12-19 12:03:48,431 [ scc.merge] INFO Updating 7a798ce..5e2de43
2025-12-19 12:03:48,431 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,431 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-12-19 12:03:48,431 [ scc.merge] INFO
2025-12-19 12:03:48,431 [ scc.merge] INFO Repository: ome/omero-mapr
2025-12-19 12:03:48,431 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-12-19 12:03:48,432 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Repository: ome/omero-metadata
2025-12-19 12:03:48,432 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-12-19 12:03:48,432 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Repository: ome/omero-parade
2025-12-19 12:03:48,432 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-12-19 12:03:48,432 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-12-19 12:03:48,432 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Repository: ome/omero-rois
2025-12-19 12:03:48,432 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-19 12:03:48,432 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-12-19 12:03:48,432 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,432 [ scc.merge] INFO
2025-12-19 12:03:48,432 [ scc.merge] INFO Repository: ome/omero-signup
2025-12-19 12:03:48,432 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-12-19 12:03:48,433 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-12-19 12:03:48,433 [ scc.merge] INFO Updating cda3ec6..c8a0015
2025-12-19 12:03:48,433 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Repository: ome/omero-upload
2025-12-19 12:03:48,433 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-12-19 12:03:48,433 [ scc.merge] INFO Updating deab817..160d894
2025-12-19 12:03:48,433 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-12-19 12:03:48,433 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-12-19 12:03:48,433 [ scc.merge] INFO Updating 8f3c313..4e1e685
2025-12-19 12:03:48,433 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-19 12:03:48,433 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-12-19 12:03:48,433 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,433 [ scc.merge] INFO
2025-12-19 12:03:48,433 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-12-19 12:03:48,434 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-12-19 12:03:48,434 [ scc.merge] INFO Already up to date.
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] INFO Repository: ome/scripts
2025-12-19 12:03:48,434 [ scc.merge] INFO Excluded PRs:
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-12-19 12:03:48,434 [ scc.merge] INFO Updating 4b4c755..18a9a75
2025-12-19 12:03:48,434 [ scc.merge] INFO Previously merged:
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] INFO Merged PRs:
2025-12-19 12:03:48,434 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2025-12-19 12:03:48,434 [ scc.merge] INFO
2025-12-19 12:03:48,434 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-19 12:03:48,434 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,436 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-12-19 12:03:48,436 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,438 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,438 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-12-19 12:03:48,439 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,441 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,441 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-12-19 12:03:48,441 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-12-19 12:03:48,443 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-12-19 12:03:48,446 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-12-19 12:03:48,448 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,450 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,450 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-12-19 12:03:48,450 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,452 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,452 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-12-19 12:03:48,452 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,454 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,454 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-19 12:03:48,454 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-19 12:03:48,456 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-19 12:03:48,458 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,461 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,461 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-19 12:03:48,461 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,463 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,463 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-19 12:03:48,463 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-19 12:03:48,465 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-19 12:03:48,467 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-19 12:03:48,469 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-19 12:03:48,472 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-19 12:03:48,474 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-19 12:03:48,476 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-19 12:03:48,478 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-19 12:03:48,480 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-19 12:03:48,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-19 12:03:48,483 [ scc.git] DEBUG Calling 'git remote'
2025-12-19 12:03:48,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 64585c1] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD f6bc617] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-12-19 12:04:35,232 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-12-19 12:04:44,714 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-12-19 12:04:47,225 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-19 12:04:52,177 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-19 12:05:35,317 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
