Started by user devspace [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 43 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv > git submodule update --init --recursive omero-cli-zarr # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.0.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.11.0-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.4-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached pyjwt-2.11.0-py3-none-any.whl (28 kB) Using cached cryptography-46.0.4-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2026.1.4 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.4 future-1.0.0 idna-3.11 pycparser-3.0 pyjwt-2.11.0 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-02-05 09:47:45,376 [ scc.config] DEBUG Found github.token 2026-02-05 09:47:45,377 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-02-05 09:47:45,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:47:46,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:47:46,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-02-05 09:47:46,412 [ scc.gh] DEBUG 4994 remaining from 5000 (Reset at 10:02 2026-02-05 09:47:46,413 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:47:46,415 [ scc.git] DEBUG Check current status 2026-02-05 09:47:46,415 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:47:46,418 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-02-05 09:47:46,418 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:47:46,465 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-05 09:47:46,467 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-05 09:47:46,470 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-02-05 09:47:46,473 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-02-05 09:47:46,477 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-02-05 09:47:46,480 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-05 09:47:46,483 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-05 09:47:46,485 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-02-05 09:47:46,488 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-05 09:47:46,491 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-02-05 09:47:46,494 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-05 09:47:46,496 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-05 09:47:46,499 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-05 09:47:46,502 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-05 09:47:46,505 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-02-05 09:47:46,508 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-05 09:47:46,510 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-02-05 09:47:46,513 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-02-05 09:47:46,516 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-05 09:47:46,518 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-05 09:47:46,521 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-05 09:47:46,524 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-02-05 09:47:46,527 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:47:46,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-02-05 09:47:47,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:47:47,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:47:48,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:47:48,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:47:48,850 [ scc.git] DEBUG Resetting... 2026-02-05 09:47:48,850 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-02-05 09:47:48,857 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-02-05 09:47:48,858 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-02-05 09:47:48,955 [ scc.git] DEBUG Check current status 2026-02-05 09:47:48,955 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:47:48,957 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-02-05 09:47:48,957 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:47:49,002 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-05 09:47:49,004 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-05 09:47:49,007 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-02-05 09:47:49,010 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-02-05 09:47:49,013 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-02-05 09:47:49,016 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-05 09:47:49,018 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-05 09:47:49,021 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-02-05 09:47:49,024 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-05 09:47:49,027 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-02-05 09:47:49,029 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-05 09:47:49,032 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-05 09:47:49,035 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-05 09:47:49,038 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-05 09:47:49,040 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-02-05 09:47:49,043 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-05 09:47:49,045 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-02-05 09:47:49,048 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-02-05 09:47:49,050 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-05 09:47:49,053 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-05 09:47:49,056 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-05 09:47:49,059 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-02-05 09:47:49,060 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-02-05 09:47:49,060 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-02-05 09:47:49,060 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-02-05 09:47:49,060 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-02-05 09:47:49,060 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-02-05 09:47:49,060 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:47:49,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-02-05 09:47:50,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-02-05 09:47:50,013 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:47:50,013 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-05 09:47:50,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-02-05 09:47:50,547 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:47:50,547 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-05 09:47:51,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-02-05 09:47:51,099 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:47:51,099 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-05 09:47:51,099 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:47:51,099 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:47:51,099 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:47:51,102 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:47:51,104 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:47:51,104 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:47:51,106 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:47:51,109 [ scc.git] DEBUG Already up to date. 2026-02-05 09:47:51,109 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-02-05 09:47:51,392 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-05 09:47:51,392 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-02-05 09:47:51,396 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-02-05 09:47:51,702 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-05 09:47:51,702 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-02-05 09:47:51,707 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-02-05 09:47:52,258 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-05 09:47:52,258 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-02-05 09:47:52,262 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:47:52,262 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:47:52,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:47:52,264 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-05 09:47:52,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:47:52,269 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-05 09:47:52,285 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:47:52,288 [ scc.git] DEBUG scripts | 2 +- 2026-02-05 09:47:52,288 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:47:52,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:47:52,455 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-05 09:47:52,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:47:52,460 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-05 09:47:52,475 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:47:52,478 [ scc.git] DEBUG omero-figure | 2 +- 2026-02-05 09:47:52,478 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:47:52,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:47:52,894 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-05 09:47:52,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:47:52,899 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-05 09:47:52,914 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:47:52,917 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-02-05 09:47:52,917 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:47:53,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:47:53,304 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:47:53,365 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-02-05 09:47:53,389 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-02-05 09:47:53,402 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-02-05 09:47:53,403 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:47:53,403 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:47:53,405 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:47:53,482 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff2372d9150> has no local changes 2026-02-05 09:47:53,482 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:47:53,551 [ scc.git] DEBUG [detached HEAD 2f9783f] merge master -Dorg -Snone 2026-02-05 09:47:53,551 [ scc.merge] INFO Repository: ome/omero-plugins 2026-02-05 09:47:53,551 [ scc.merge] INFO Already up to date. 2026-02-05 09:47:53,551 [ scc.merge] INFO 2026-02-05 09:47:53,551 [ scc.merge] INFO Merged PRs: 2026-02-05 09:47:53,551 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-05 09:47:53,551 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-05 09:47:53,552 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-05 09:47:53,552 [ scc.merge] INFO 2026-02-05 09:47:53,552 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-02-05 09:47:53,552 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out '10df9400245a8ffdf6e6557bf0690841972e1998' Submodule path 'omero-figure': checked out 'b79d638b95385463319f73afc484cf4a1ee3ba13' Submodule path 'omero-iviewer': checked out '5e2de43ad401fb00690a79644056e0ac15fabfd5' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-02-05 09:48:09,727 [ scc.config] DEBUG Found github.token 2026-02-05 09:48:09,728 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-02-05 09:48:09,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:48:10,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:48:10,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-02-05 09:48:10,758 [ scc.gh] DEBUG 4980 remaining from 5000 (Reset at 10:02 2026-02-05 09:48:10,758 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:10,760 [ scc.git] DEBUG Check current status 2026-02-05 09:48:10,761 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:10,763 [ scc.git] DEBUG 2f9783f merge master -Dorg -Snone 2026-02-05 09:48:10,763 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:10,809 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-05 09:48:10,812 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-05 09:48:10,815 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-02-05 09:48:10,818 [ scc.git] DEBUG +10df9400245a8ffdf6e6557bf0690841972e1998 omero-cli-zarr (v0.7.0rc1-7-g10df940) 2026-02-05 09:48:10,822 [ scc.git] DEBUG +b79d638b95385463319f73afc484cf4a1ee3ba13 omero-figure (v7.3.1-1-gb79d638b) 2026-02-05 09:48:10,825 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-05 09:48:10,828 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-05 09:48:10,831 [ scc.git] DEBUG +5e2de43ad401fb00690a79644056e0ac15fabfd5 omero-iviewer (v0.16.0-20-g5e2de43) 2026-02-05 09:48:10,834 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-05 09:48:10,837 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2026-02-05 09:48:10,839 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-05 09:48:10,842 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-05 09:48:10,845 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-05 09:48:10,848 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-05 09:48:10,851 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-02-05 09:48:10,854 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-05 09:48:10,856 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-02-05 09:48:10,859 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-02-05 09:48:10,861 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-05 09:48:10,864 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-05 09:48:10,867 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-05 09:48:10,870 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-02-05 09:48:10,873 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:10,873 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-02-05 09:48:10,874 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-02-05 09:48:11,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-02-05 09:48:11,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:12,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:12,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:13,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:13,101 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:13,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-02-05 09:48:13,171 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:13,173 [ scc.git] DEBUG Check current status 2026-02-05 09:48:13,173 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:13,175 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-02-05 09:48:13,176 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:13,214 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:13,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-02-05 09:48:14,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:14,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:15,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:15,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:15,489 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:15,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:15,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-02-05 09:48:15,527 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:15,529 [ scc.git] DEBUG Check current status 2026-02-05 09:48:15,529 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:15,531 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-02-05 09:48:15,531 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:15,569 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:16,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-02-05 09:48:16,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:17,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:17,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:17,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:17,916 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:17,953 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:17,954 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-02-05 09:48:17,954 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:17,956 [ scc.git] DEBUG Check current status 2026-02-05 09:48:17,956 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:17,958 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-02-05 09:48:17,958 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:17,997 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:18,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-02-05 09:48:18,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:19,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:19,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:20,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:20,300 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:20,337 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:20,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-02-05 09:48:20,338 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:20,340 [ scc.git] DEBUG Check current status 2026-02-05 09:48:20,340 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:20,342 [ scc.git] DEBUG 10df940 Merge pull request #186 from jburel/changelog2ghrelease 2026-02-05 09:48:20,342 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:20,380 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:20,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-02-05 09:48:21,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:21,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:22,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:22,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:22,723 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:22,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:22,761 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-02-05 09:48:22,761 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:22,763 [ scc.git] DEBUG Check current status 2026-02-05 09:48:22,763 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:22,766 [ scc.git] DEBUG b79d638b Bump version: 7.3.1 → 7.3.2.dev0 2026-02-05 09:48:22,766 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:22,804 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:23,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-02-05 09:48:23,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:24,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:24,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:25,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:25,073 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:25,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:25,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-02-05 09:48:25,111 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:25,113 [ scc.git] DEBUG Check current status 2026-02-05 09:48:25,113 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:25,116 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-02-05 09:48:25,116 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:25,154 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:25,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-02-05 09:48:26,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:26,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:27,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:27,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:27,509 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:27,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:27,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-02-05 09:48:27,547 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:27,549 [ scc.git] DEBUG Check current status 2026-02-05 09:48:27,550 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:27,552 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-02-05 09:48:27,552 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:27,592 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:28,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-02-05 09:48:28,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:29,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:29,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:30,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:30,007 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:30,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:30,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-02-05 09:48:30,045 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:30,047 [ scc.git] DEBUG Check current status 2026-02-05 09:48:30,047 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:30,050 [ scc.git] DEBUG 5e2de43 Merge pull request #510 from joshmoore/issue-509 2026-02-05 09:48:30,050 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:30,090 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:30,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-02-05 09:48:31,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:31,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:31,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:32,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:32,401 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:32,439 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:32,440 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-02-05 09:48:32,440 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:32,442 [ scc.git] DEBUG Check current status 2026-02-05 09:48:32,442 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:32,444 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-02-05 09:48:32,444 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:32,483 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:32,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-02-05 09:48:33,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:33,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:34,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:34,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:34,797 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:34,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:34,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-02-05 09:48:34,837 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:34,839 [ scc.git] DEBUG Check current status 2026-02-05 09:48:34,839 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:34,841 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-02-05 09:48:34,841 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:34,880 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:35,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-02-05 09:48:35,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:36,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:36,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:37,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:37,213 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:37,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:37,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-02-05 09:48:37,262 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:37,266 [ scc.git] DEBUG Check current status 2026-02-05 09:48:37,266 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:37,269 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:37,272 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-02-05 09:48:37,356 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:37,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-02-05 09:48:38,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:38,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:39,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:39,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:39,598 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:39,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:39,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-02-05 09:48:39,637 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:39,639 [ scc.git] DEBUG Check current status 2026-02-05 09:48:39,639 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:39,641 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-02-05 09:48:39,642 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:39,681 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:40,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-02-05 09:48:40,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:41,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:41,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:41,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:41,903 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:41,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:41,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-02-05 09:48:41,942 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:41,944 [ scc.git] DEBUG Check current status 2026-02-05 09:48:41,944 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:41,946 [ scc.git] DEBUG bdfeb5e bump sphinx version 2026-02-05 09:48:41,946 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:41,986 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:42,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-02-05 09:48:43,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:43,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:43,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:44,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:44,341 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:44,379 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:44,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-02-05 09:48:44,380 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:44,382 [ scc.git] DEBUG Check current status 2026-02-05 09:48:44,382 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:44,384 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-02-05 09:48:44,384 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:44,422 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:44,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-02-05 09:48:45,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:45,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:46,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:46,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:46,724 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:46,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:46,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-02-05 09:48:46,764 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:46,766 [ scc.git] DEBUG Check current status 2026-02-05 09:48:46,766 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:46,768 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-02-05 09:48:46,768 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:46,808 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:47,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-02-05 09:48:47,145 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-02-05 09:48:47,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-02-05 09:48:48,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:48,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:48,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:49,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:49,319 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:49,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:49,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-02-05 09:48:49,357 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:49,360 [ scc.git] DEBUG Check current status 2026-02-05 09:48:49,360 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:49,362 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-02-05 09:48:49,362 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:49,400 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:49,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-02-05 09:48:50,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:50,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:51,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:51,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:51,687 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:51,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:51,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-02-05 09:48:51,725 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:51,727 [ scc.git] DEBUG Check current status 2026-02-05 09:48:51,727 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:51,729 [ scc.git] DEBUG 160d894 Fix display of code 2026-02-05 09:48:51,729 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:51,768 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:52,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-02-05 09:48:52,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:53,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:53,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:54,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:54,050 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:54,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:54,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-02-05 09:48:54,088 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:54,091 [ scc.git] DEBUG Check current status 2026-02-05 09:48:54,091 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:54,093 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-02-05 09:48:54,094 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:54,131 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:54,132 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-02-05 09:48:54,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-02-05 09:48:55,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:55,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:56,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:56,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:56,577 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:56,616 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:56,616 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-02-05 09:48:56,616 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:56,618 [ scc.git] DEBUG Check current status 2026-02-05 09:48:56,619 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:56,621 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-02-05 09:48:56,621 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:56,659 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:57,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-02-05 09:48:57,013 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-02-05 09:48:57,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-02-05 09:48:57,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:48:58,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:48:58,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:48:59,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:48:59,391 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:48:59,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:48:59,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-02-05 09:48:59,435 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:48:59,438 [ scc.git] DEBUG Check current status 2026-02-05 09:48:59,438 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:48:59,440 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-02-05 09:48:59,440 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:48:59,482 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:48:59,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-02-05 09:48:59,853 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-02-05 09:49:00,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-02-05 09:49:00,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:49:01,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:49:01,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:49:02,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:49:02,036 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:49:02,075 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:49:02,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-02-05 09:49:02,076 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:49:02,078 [ scc.git] DEBUG Check current status 2026-02-05 09:49:02,078 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:49:02,080 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-02-05 09:49:02,080 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:49:02,119 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:49:02,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-02-05 09:49:03,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:49:03,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:49:04,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:49:04,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:49:04,481 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:49:04,521 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:49:04,521 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-02-05 09:49:04,521 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-05 09:49:04,523 [ scc.git] DEBUG Check current status 2026-02-05 09:49:04,523 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:49:04,525 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-02-05 09:49:04,526 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:49:04,564 [ scc.config] DEBUG Found remote.origin.url 2026-02-05 09:49:04,565 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-02-05 09:49:04,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-05 09:49:04,926 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-05 09:49:05,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-02-05 09:49:05,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-05 09:49:06,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-05 09:49:06,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-05 09:49:07,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-05 09:49:07,135 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:49:07,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:49:07,176 [ scc.git] DEBUG Resetting... 2026-02-05 09:49:07,176 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-02-05 09:49:07,183 [ scc.git] DEBUG HEAD is now at 2f9783f merge master -Dorg -Snone 2026-02-05 09:49:07,183 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-02-05 09:49:07,236 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-02-05 09:49:07,251 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-02-05 09:49:07,280 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-02-05 09:49:07,299 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-02-05 09:49:07,314 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-02-05 09:49:07,336 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-02-05 09:49:07,351 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-02-05 09:49:07,362 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-02-05 09:49:07,387 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-02-05 09:49:07,390 [ scc.git] DEBUG Check current status 2026-02-05 09:49:07,390 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-05 09:49:07,392 [ scc.git] DEBUG 2f9783f merge master -Dorg -Snone 2026-02-05 09:49:07,392 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-05 09:49:07,438 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-05 09:49:07,441 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-05 09:49:07,444 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-02-05 09:49:07,446 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-02-05 09:49:07,450 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-02-05 09:49:07,453 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-05 09:49:07,456 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-05 09:49:07,459 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2026-02-05 09:49:07,462 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-05 09:49:07,464 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-02-05 09:49:07,467 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-05 09:49:07,470 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-05 09:49:07,473 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-05 09:49:07,475 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-05 09:49:07,478 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-02-05 09:49:07,481 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-05 09:49:07,483 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-02-05 09:49:07,486 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-02-05 09:49:07,489 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-05 09:49:07,491 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-05 09:49:07,494 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-05 09:49:07,498 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-02-05 09:49:07,499 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-02-05 09:49:07,499 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-02-05 09:49:07,499 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-02-05 09:49:07,499 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-02-05 09:49:07,499 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-02-05 09:49:07,499 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-02-05 09:49:07,499 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:49:07,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-02-05 09:49:08,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-02-05 09:49:08,397 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:49:09,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-02-05 09:49:09,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:09,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-02-05 09:49:10,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:49:10,418 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-05 09:49:10,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-02-05 09:49:10,944 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:49:11,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-02-05 09:49:12,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:12,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-02-05 09:49:12,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:49:12,986 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-05 09:49:13,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-02-05 09:49:13,534 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:49:14,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-02-05 09:49:14,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:15,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-02-05 09:49:15,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:49:15,589 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-05 09:49:15,590 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:49:15,590 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:15,590 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:15,592 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:49:15,594 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:49:15,594 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:49:15,597 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:49:15,600 [ scc.git] DEBUG Already up to date. 2026-02-05 09:49:15,600 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-02-05 09:49:16,303 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-05 09:49:16,303 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-02-05 09:49:16,308 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-02-05 09:49:17,043 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-05 09:49:17,043 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-02-05 09:49:17,047 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-02-05 09:49:17,577 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-05 09:49:17,577 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-02-05 09:49:17,582 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:49:17,582 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:17,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:17,584 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-05 09:49:17,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:17,589 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-05 09:49:17,591 [ scc.git] DEBUG Already up to date. 2026-02-05 09:49:17,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:49:17,775 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-05 09:49:17,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:17,779 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-05 09:49:17,782 [ scc.git] DEBUG Already up to date. 2026-02-05 09:49:18,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:49:18,179 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-05 09:49:18,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:18,184 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-05 09:49:18,187 [ scc.git] DEBUG Already up to date. 2026-02-05 09:49:18,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:49:18,577 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:49:18,626 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:18,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:18,629 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:49:19,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-02-05 09:49:19,049 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:49:19,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-02-05 09:49:19,050 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:19,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:19,052 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:49:19,054 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:49:19,054 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:49:19,057 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:49:19,060 [ scc.git] DEBUG Already up to date. 2026-02-05 09:49:19,060 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:49:19,060 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:19,060 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:19,062 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:49:19,100 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:19,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:19,102 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:49:19,138 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:49:19,141 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1af7e90> has no local changes 2026-02-05 09:49:19,141 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:49:19,147 [ scc.git] DEBUG [detached HEAD 5a69ea8] merge master -Dorg -Ssuccess-only 2026-02-05 09:49:19,147 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:49:19,147 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:49:19,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-02-05 09:49:20,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-02-05 09:49:20,281 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:49:20,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-02-05 09:49:21,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:22,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:49:22,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-02-05 09:49:23,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:49:23,120 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:49:23,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-02-05 09:49:24,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-02-05 09:49:24,197 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:49:24,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-02-05 09:49:24,198 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:24,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:24,200 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:49:24,202 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:49:24,202 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:49:24,205 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:49:24,208 [ scc.git] DEBUG Already up to date. 2026-02-05 09:49:24,208 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-02-05 09:49:24,494 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-02-05 09:49:24,494 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-02-05 09:49:24,499 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:49:24,499 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:24,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:24,501 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-02-05 09:49:24,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:24,506 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-02-05 09:49:24,512 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:49:24,515 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:49:24,515 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:49:24,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:49:24,669 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:49:24,706 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:24,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:24,708 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:49:24,744 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:49:24,747 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab47afd90> has no local changes 2026-02-05 09:49:24,747 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:49:24,753 [ scc.git] DEBUG [detached HEAD 5a117af] merge master -Dorg -Ssuccess-only 2026-02-05 09:49:24,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:49:24,753 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:49:25,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-02-05 09:49:25,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-02-05 09:49:26,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-02-05 09:49:26,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-02-05 09:49:27,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:27,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:49:28,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-02-05 09:49:28,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:49:28,878 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-02-05 09:49:29,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-02-05 09:49:29,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-02-05 09:49:29,964 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:49:29,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-02-05 09:49:29,964 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:29,964 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:29,967 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:49:29,969 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:49:29,969 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:49:29,972 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:49:29,980 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-02-05 09:49:30,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-02-05 09:49:31,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-02-05 09:49:32,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-02-05 09:49:33,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-02-05 09:49:33,213 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-02-05 09:49:41,132 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-02-05 09:49:41,132 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-02-05 09:49:41,136 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:49:41,136 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:41,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:41,138 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-02-05 09:49:41,141 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:41,143 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-02-05 09:49:41,151 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-02-05 09:49:41,152 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:49:41,155 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-02-05 09:49:41,155 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-02-05 09:49:41,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:49:41,321 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:49:41,359 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:49:41,359 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:49:41,361 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:49:41,397 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:49:41,400 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab2079bd0> has no local changes 2026-02-05 09:49:41,400 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:49:41,407 [ scc.git] DEBUG [detached HEAD df96176] merge master -Dorg -Ssuccess-only 2026-02-05 09:49:41,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:49:41,407 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:49:41,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-02-05 09:49:42,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/192 HTTP/1.1" 200 None 2026-02-05 09:49:42,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/192/comments HTTP/1.1" 200 None 2026-02-05 09:49:43,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b58766a2328aa45efdd672aaf3b528af46b973b1 HTTP/1.1" 200 None 2026-02-05 09:49:44,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b58766a2328aa45efdd672aaf3b528af46b973b1/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:44,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b58766a2328aa45efdd672aaf3b528af46b973b1/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:49:45,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b58766a2328aa45efdd672aaf3b528af46b973b1 HTTP/1.1" 200 None 2026-02-05 09:49:45,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/b58766a2328aa45efdd672aaf3b528af46b973b1?per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:46,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b58766a2328aa45efdd672aaf3b528af46b973b1 HTTP/1.1" 200 None 2026-02-05 09:49:46,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b58766a2328aa45efdd672aaf3b528af46b973b1/status HTTP/1.1" 200 None 2026-02-05 09:49:46,740 [ scc.repo] DEBUG - PR 192 jburel 'Set Omero pixel size' 2026-02-05 09:49:47,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2026-02-05 09:49:47,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2026-02-05 09:49:48,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2026-02-05 09:49:48,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2026-02-05 09:49:49,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-02-05 09:49:49,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-02-05 09:49:50,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-02-05 09:49:50,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:51,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:49:51,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-02-05 09:49:52,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:52,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-02-05 09:49:53,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2026-02-05 09:49:53,353 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-02-05 09:49:53,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-02-05 09:49:54,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-02-05 09:49:54,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-02-05 09:49:55,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:56,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:49:56,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-02-05 09:49:57,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-02-05 09:49:57,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-02-05 09:49:58,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-02-05 09:49:58,072 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-02-05 09:49:58,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2026-02-05 09:49:59,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2026-02-05 09:49:59,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/5aed4047c49e1cc8e8036045b09d3102237c0c30 HTTP/1.1" 200 None 2026-02-05 09:50:00,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/5aed4047c49e1cc8e8036045b09d3102237c0c30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:00,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/5aed4047c49e1cc8e8036045b09d3102237c0c30/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:01,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2026-02-05 09:50:01,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2026-02-05 09:50:02,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2026-02-05 09:50:02,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2026-02-05 09:50:03,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-02-05 09:50:03,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-02-05 09:50:04,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-02-05 09:50:04,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-02-05 09:50:05,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-02-05 09:50:05,371 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:50:05,371 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-02-05 09:50:05,371 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:50:05,371 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:05,374 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:50:05,376 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:50:05,376 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:50:05,379 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:50:05,390 [ scc.git] DEBUG Updating 11d3587..10df940 2026-02-05 09:50:06,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-02-05 09:50:06,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-02-05 09:50:07,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-02-05 09:50:08,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-02-05 09:50:09,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-02-05 09:50:09,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-02-05 09:50:10,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-02-05 09:50:11,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-02-05 09:50:12,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-02-05 09:50:13,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-02-05 09:50:13,306 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-02-05 09:50:14,590 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-05 09:50:14,590 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-02-05 09:50:14,594 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-02-05 09:50:14,857 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-05 09:50:14,858 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-02-05 09:50:14,862 [ scc.git] DEBUG Calling 'git fetch origin pull/192/head' 2026-02-05 09:50:15,118 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-05 09:50:15,118 [ scc.git] DEBUG * branch refs/pull/192/head -> FETCH_HEAD 2026-02-05 09:50:15,123 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:50:15,123 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:50:15,123 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:15,125 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-02-05 09:50:15,128 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:15,130 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-02-05 09:50:15,140 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:50:15,144 [ scc.git] DEBUG README.rst | 14 ++ 2026-02-05 09:50:15,144 [ scc.git] DEBUG src/omero_zarr/cli.py | 66 +++++---- 2026-02-05 09:50:15,144 [ scc.git] DEBUG src/omero_zarr/kvp_tables.py | 82 +++++++++++ 2026-02-05 09:50:15,144 [ scc.git] DEBUG src/omero_zarr/masks.py | 46 ++++-- 2026-02-05 09:50:15,144 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 51 +++++-- 2026-02-05 09:50:15,144 [ scc.git] DEBUG src/omero_zarr/util.py | 49 ++++++- 2026-02-05 09:50:15,144 [ scc.git] DEBUG test/integration/clitest/test_export.py | 251 +++++++++++++++++++++++--------- 2026-02-05 09:50:15,144 [ scc.git] DEBUG 7 files changed, 443 insertions(+), 116 deletions(-) 2026-02-05 09:50:15,144 [ scc.git] DEBUG create mode 100644 src/omero_zarr/kvp_tables.py 2026-02-05 09:50:15,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:50:15,306 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-02-05 09:50:15,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:15,312 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-02-05 09:50:15,321 [ scc.git] DEBUG CONFLICT (modify/delete): CHANGELOG.md deleted in HEAD and modified in bb180dbb97ddc67cd2cf655d56058ba7da765769. Version bb180dbb97ddc67cd2cf655d56058ba7da765769 of CHANGELOG.md left in tree. 2026-02-05 09:50:15,321 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-02-05 09:50:15,321 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-02-05 09:50:15,321 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-02-05 09:50:15,321 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-02-05 09:50:15,321 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:50:15,322 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:50:15,324 [ scc.git] DEBUG Calling 'git reset --hard 9636781d955a23a6bd14689c529dd02f7e84e59f' 2026-02-05 09:50:15,329 [ scc.git] DEBUG HEAD is now at 9636781 merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) 2026-02-05 09:50:15,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:50:15,730 [ scc.git] DEBUG Calling 'git merge-base 10df9400245a8ffdf6e6557bf0690841972e1998 bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-02-05 09:50:15,733 [ scc.git] DEBUG Calling 'git diff --name-only f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb..10df9400245a8ffdf6e6557bf0690841972e1998' 2026-02-05 09:50:15,736 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - CHANGELOG.md --conflicts 2026-02-05 09:50:15,738 [ scc.config] DEBUG Found github.token 2026-02-05 09:50:15,738 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-02-05 09:50:15,738 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b58766a2328aa45efdd672aaf3b528af46b973b1' 2026-02-05 09:50:15,741 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:15,743 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 192 (Set Omero pixel size) b58766a2328aa45efdd672aaf3b528af46b973b1' 2026-02-05 09:50:15,753 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2026-02-05 09:50:15,754 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:50:15,757 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 60 ++++++++++++++++++++++++++++++--- 2026-02-05 09:50:15,757 [ scc.git] DEBUG test/integration/clitest/test_import.py | 1 + 2026-02-05 09:50:15,757 [ scc.git] DEBUG 2 files changed, 56 insertions(+), 5 deletions(-) 2026-02-05 09:50:16,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:50:16,146 [ scc.git] DEBUG Resolving previous conflict on Pull Request #192. 2026-02-05 09:50:16,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:50:17,739 [urllib3.conn] DEBUG https://api.github.com:443 "PATCH /repos/ome/omero-cli-zarr/issues/comments/3850446647 HTTP/1.1" 200 None 2026-02-05 09:50:17,740 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:50:17,778 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:50:17,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:17,780 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:50:17,818 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:50:17,822 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1b71e90> has no local changes 2026-02-05 09:50:17,822 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 182 will-moore 'Revert "Remove support for Plate import"' (exclude comment) - PR 181 will-moore 'Add labels support for import' (exclude comment) - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..10df940 Previously merged: - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 192 jburel 'Set Omero pixel size' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:50:17,828 [ scc.git] DEBUG [detached HEAD 91693cf] merge master -Dorg -Ssuccess-only 2026-02-05 09:50:17,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:50:17,828 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:50:18,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-02-05 09:50:19,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/666 HTTP/1.1" 200 None 2026-02-05 09:50:19,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/665 HTTP/1.1" 200 None 2026-02-05 09:50:20,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/665/comments HTTP/1.1" 200 None 2026-02-05 09:50:20,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b HTTP/1.1" 200 None 2026-02-05 09:50:21,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:21,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:22,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b HTTP/1.1" 200 None 2026-02-05 09:50:22,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/bdf45b550f4528d17eba292491bbb620ad49022b?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:22,570 [ scc.repo] DEBUG - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-02-05 09:50:23,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/664 HTTP/1.1" 200 None 2026-02-05 09:50:23,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/664/comments HTTP/1.1" 200 None 2026-02-05 09:50:23,574 [ scc.repo] DEBUG # ... Include label: include 2026-02-05 09:50:24,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea HTTP/1.1" 200 None 2026-02-05 09:50:24,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:25,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:25,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea HTTP/1.1" 200 None 2026-02-05 09:50:26,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/ef2d52de60235379f42877477aa2088551610bea?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:26,127 [ scc.repo] DEBUG - PR 664 Nirkan 'Handle many channels ' 2026-02-05 09:50:26,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/663 HTTP/1.1" 200 None 2026-02-05 09:50:27,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/663/comments HTTP/1.1" 200 None 2026-02-05 09:50:27,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1a0bf21adfbde776ff98e417c816b68e3137f4c3 HTTP/1.1" 200 None 2026-02-05 09:50:28,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1a0bf21adfbde776ff98e417c816b68e3137f4c3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:29,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1a0bf21adfbde776ff98e417c816b68e3137f4c3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:29,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1a0bf21adfbde776ff98e417c816b68e3137f4c3 HTTP/1.1" 200 None 2026-02-05 09:50:29,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/1a0bf21adfbde776ff98e417c816b68e3137f4c3?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:29,931 [ scc.repo] DEBUG - PR 663 will-moore 'Zarr' 2026-02-05 09:50:30,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/662 HTTP/1.1" 200 None 2026-02-05 09:50:30,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/662/comments HTTP/1.1" 200 None 2026-02-05 09:50:31,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac HTTP/1.1" 200 None 2026-02-05 09:50:31,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:32,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:32,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac HTTP/1.1" 200 None 2026-02-05 09:50:33,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/21baa4e8ba004395bd7a27d520edaa2ed4a540ac?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:33,402 [ scc.repo] DEBUG - PR 662 will-moore 'Export script runnable without OMERO' 2026-02-05 09:50:33,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656 HTTP/1.1" 200 None 2026-02-05 09:50:34,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656/comments HTTP/1.1" 200 None 2026-02-05 09:50:34,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2026-02-05 09:50:35,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:35,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:36,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2026-02-05 09:50:37,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c7d0108c6df89255b8875924ed52e264a72e581d?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:37,022 [ scc.repo] DEBUG - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-02-05 09:50:37,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654 HTTP/1.1" 200 None 2026-02-05 09:50:38,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654/comments HTTP/1.1" 200 None 2026-02-05 09:50:38,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/54c30d85fccf5d11463886b86af374471c3d6c83 HTTP/1.1" 200 None 2026-02-05 09:50:39,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/54c30d85fccf5d11463886b86af374471c3d6c83/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:39,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/54c30d85fccf5d11463886b86af374471c3d6c83/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:40,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/54c30d85fccf5d11463886b86af374471c3d6c83 HTTP/1.1" 200 None 2026-02-05 09:50:40,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/54c30d85fccf5d11463886b86af374471c3d6c83?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:40,481 [ scc.repo] DEBUG - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-02-05 09:50:41,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None 2026-02-05 09:50:41,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652/comments HTTP/1.1" 200 None 2026-02-05 09:50:41,572 [ scc.repo] DEBUG # ... Include label: include 2026-02-05 09:50:42,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-02-05 09:50:42,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:43,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:43,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-02-05 09:50:44,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:50:44,115 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-02-05 09:50:44,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648 HTTP/1.1" 200 None 2026-02-05 09:50:45,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648/comments HTTP/1.1" 200 None 2026-02-05 09:50:45,145 [ scc.repo] DEBUG # ... Include label: include 2026-02-05 09:50:45,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cbeb405db7ba46e88e1c02bba654c03f50421695 HTTP/1.1" 200 None 2026-02-05 09:50:46,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cbeb405db7ba46e88e1c02bba654c03f50421695/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:50:46,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cbeb405db7ba46e88e1c02bba654c03f50421695/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:50:47,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2026-02-05 09:50:47,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2026-02-05 09:50:47,784 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:50:47,784 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-02-05 09:50:47,784 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:50:47,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:50:47,787 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:50:47,789 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:50:47,789 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:50:47,793 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:50:47,828 [ scc.git] DEBUG Updating 9cc36cde..b79d638b 2026-02-05 09:50:48,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-02-05 09:50:49,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-02-05 09:50:50,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-02-05 09:50:51,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-02-05 09:50:52,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-02-05 09:50:52,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-02-05 09:50:53,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-02-05 09:50:54,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-02-05 09:50:55,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-02-05 09:50:56,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-02-05 09:50:56,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-02-05 09:50:57,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-02-05 09:50:58,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-02-05 09:50:59,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-02-05 09:50:59,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-02-05 09:51:00,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-02-05 09:51:01,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-02-05 09:51:02,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-02-05 09:51:02,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-02-05 09:51:03,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-02-05 09:51:04,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-02-05 09:51:04,655 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head' 2026-02-05 09:51:04,941 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:04,941 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD 2026-02-05 09:51:04,946 [ scc.git] DEBUG Calling 'git fetch origin pull/654/head' 2026-02-05 09:51:05,217 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:05,217 [ scc.git] DEBUG * branch refs/pull/654/head -> FETCH_HEAD 2026-02-05 09:51:05,222 [ scc.git] DEBUG Calling 'git fetch origin pull/656/head' 2026-02-05 09:51:05,507 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:05,507 [ scc.git] DEBUG * branch refs/pull/656/head -> FETCH_HEAD 2026-02-05 09:51:05,511 [ scc.git] DEBUG Calling 'git fetch origin pull/662/head' 2026-02-05 09:51:05,782 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:05,782 [ scc.git] DEBUG * branch refs/pull/662/head -> FETCH_HEAD 2026-02-05 09:51:05,787 [ scc.git] DEBUG Calling 'git fetch origin pull/663/head' 2026-02-05 09:51:06,042 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:06,042 [ scc.git] DEBUG * branch refs/pull/663/head -> FETCH_HEAD 2026-02-05 09:51:06,047 [ scc.git] DEBUG Calling 'git fetch origin pull/664/head' 2026-02-05 09:51:06,312 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:06,312 [ scc.git] DEBUG * branch refs/pull/664/head -> FETCH_HEAD 2026-02-05 09:51:06,317 [ scc.git] DEBUG Calling 'git fetch origin pull/665/head' 2026-02-05 09:51:06,590 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-05 09:51:06,590 [ scc.git] DEBUG * branch refs/pull/665/head -> FETCH_HEAD 2026-02-05 09:51:06,594 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:51:06,594 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:06,594 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:06,597 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-02-05 09:51:06,604 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:06,607 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-02-05 09:51:06,631 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-02-05 09:51:06,631 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-05 09:51:06,631 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-02-05 09:51:06,632 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:06,637 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++- 2026-02-05 09:51:06,637 [ scc.git] DEBUG src/index.html | 11 ++ 2026-02-05 09:51:06,637 [ scc.git] DEBUG src/js/views/figure_view.js | 1 + 2026-02-05 09:51:06,637 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-) 2026-02-05 09:51:06,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:06,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...54c30d85fccf5d11463886b86af374471c3d6c83' 2026-02-05 09:51:06,796 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:06,798 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 654 (Refresh metadata button to reload channel names, pixel sizes) 54c30d85fccf5d11463886b86af374471c3d6c83' 2026-02-05 09:51:06,819 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-05 09:51:06,819 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-02-05 09:51:06,819 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-05 09:51:06,819 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-02-05 09:51:06,820 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:06,825 [ scc.git] DEBUG src/index.html | 5 +++ 2026-02-05 09:51:06,825 [ scc.git] DEBUG src/js/models/figure_model.js | 92 +++++++++++++++++++++++++++++++++++++++++++ 2026-02-05 09:51:06,825 [ scc.git] DEBUG src/js/models/panel_model.js | 33 ++++++++++++---- 2026-02-05 09:51:06,825 [ scc.git] DEBUG src/js/views/figure_view.js | 7 ++++ 2026-02-05 09:51:06,825 [ scc.git] DEBUG 4 files changed, 130 insertions(+), 7 deletions(-) 2026-02-05 09:51:07,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:07,195 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c7d0108c6df89255b8875924ed52e264a72e581d' 2026-02-05 09:51:07,200 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:07,203 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 656 (Option to add roi comment when adding ROI from OMERO) c7d0108c6df89255b8875924ed52e264a72e581d' 2026-02-05 09:51:07,215 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2026-02-05 09:51:07,216 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:07,220 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 3 +- 2026-02-05 09:51:07,220 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 68 +++++++++++++++++------- 2026-02-05 09:51:07,220 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 7 ++- 2026-02-05 09:51:07,220 [ scc.git] DEBUG 3 files changed, 56 insertions(+), 22 deletions(-) 2026-02-05 09:51:07,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:07,622 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...21baa4e8ba004395bd7a27d520edaa2ed4a540ac' 2026-02-05 09:51:07,627 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:07,629 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 662 (Export script runnable without OMERO) 21baa4e8ba004395bd7a27d520edaa2ed4a540ac' 2026-02-05 09:51:07,657 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-02-05 09:51:07,658 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 594 +++++++++++++++------ 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 0 -> 8441 bytes 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pil | Bin 0 -> 5143 bytes 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSans.ttf | Bin 0 -> 568896 bytes 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSansBold.ttf | Bin 0 -> 359272 bytes 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../pilfonts/FreeSansBoldOblique.ttf | Bin 0 -> 301188 bytes 2026-02-05 09:51:07,663 [ scc.git] DEBUG .../figure_scripts/pilfonts/FreeSansOblique.ttf | Bin 0 -> 441432 bytes 2026-02-05 09:51:07,663 [ scc.git] DEBUG 7 files changed, 434 insertions(+), 160 deletions(-) 2026-02-05 09:51:07,663 [ scc.git] DEBUG create mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pbm 2026-02-05 09:51:07,663 [ scc.git] DEBUG create mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pil 2026-02-05 09:51:07,663 [ scc.git] DEBUG create mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSans.ttf 2026-02-05 09:51:07,663 [ scc.git] DEBUG create mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBold.ttf 2026-02-05 09:51:07,663 [ scc.git] DEBUG create mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBoldOblique.ttf 2026-02-05 09:51:07,663 [ scc.git] DEBUG create mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansOblique.ttf 2026-02-05 09:51:08,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:08,030 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a0bf21adfbde776ff98e417c816b68e3137f4c3' 2026-02-05 09:51:08,036 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:08,038 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 1a0bf21adfbde776ff98e417c816b68e3137f4c3' 2026-02-05 09:51:08,062 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-02-05 09:51:08,063 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-05 09:51:08,063 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:08,071 [ scc.git] DEBUG omero_figure/views.py | 11 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG package-lock.json | 72 +++- 2026-02-05 09:51:08,071 [ scc.git] DEBUG package.json | 4 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/models/figure_model.js | 104 ++++- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/models/panel_model.js | 36 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/models/zarr_utils.js | 473 +++++++++++++++++++++ 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 3 + 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 10 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 12 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/info_panel_view.js | 37 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 10 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/lutpicker.js | 2 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/modal_views.js | 33 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/panel_view.js | 9 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/right_panel_view.js | 11 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 49 +-- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/js/views/util.js | 48 ++- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/templates/figure_panel.template.html | 2 +- 2026-02-05 09:51:08,071 [ scc.git] DEBUG src/templates/info_panel.template.html | 7 + 2026-02-05 09:51:08,072 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 3 +- 2026-02-05 09:51:08,072 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 3 +- 2026-02-05 09:51:08,072 [ scc.git] DEBUG src/test.html | 25 ++ 2026-02-05 09:51:08,072 [ scc.git] DEBUG 22 files changed, 822 insertions(+), 142 deletions(-) 2026-02-05 09:51:08,072 [ scc.git] DEBUG create mode 100644 src/js/models/zarr_utils.js 2026-02-05 09:51:08,072 [ scc.git] DEBUG create mode 100644 src/test.html 2026-02-05 09:51:08,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:08,451 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ef2d52de60235379f42877477aa2088551610bea' 2026-02-05 09:51:08,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:08,459 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 664 (Handle many channels ) ef2d52de60235379f42877477aa2088551610bea' 2026-02-05 09:51:08,479 [ scc.git] DEBUG Auto-merging omero_figure/views.py 2026-02-05 09:51:08,479 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-05 09:51:08,479 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-05 09:51:08,479 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/models/panel_model.js 2026-02-05 09:51:08,479 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:51:08,480 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:51:08,485 [ scc.git] DEBUG Calling 'git reset --hard 365f0cda99b08d54e16a56e5610ae38e7742948d' 2026-02-05 09:51:08,495 [ scc.git] DEBUG HEAD is now at 365f0cda merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2026-02-05 09:51:08,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:08,847 [ scc.git] DEBUG Calling 'git merge-base b79d638b95385463319f73afc484cf4a1ee3ba13 ef2d52de60235379f42877477aa2088551610bea' 2026-02-05 09:51:08,854 [ scc.git] DEBUG Calling 'git diff --name-only b79d638b95385463319f73afc484cf4a1ee3ba13..b79d638b95385463319f73afc484cf4a1ee3ba13' 2026-02-05 09:51:08,858 [ scc.git] INFO - PR 664 Nirkan 'Handle many channels ' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - src/js/models/panel_model.js - PR #663 will-moore 'Zarr' - src/js/models/panel_model.js --conflicts 2026-02-05 09:51:08,861 [ scc.config] DEBUG Found github.token 2026-02-05 09:51:08,861 [ scc.git] DEBUG Not adding comment to issue #664, already --conflicts. 2026-02-05 09:51:08,861 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bdf45b550f4528d17eba292491bbb620ad49022b' 2026-02-05 09:51:08,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:08,872 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 665 (Ensure projection parameters are within bounds in loadJSON and setID) bdf45b550f4528d17eba292491bbb620ad49022b' 2026-02-05 09:51:08,901 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-02-05 09:51:08,901 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/models/figure_model.js 2026-02-05 09:51:08,901 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-05 09:51:08,901 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/models/panel_model.js 2026-02-05 09:51:08,901 [ scc.git] DEBUG Auto-merging src/js/views/util.js 2026-02-05 09:51:08,902 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:51:08,902 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:51:08,910 [ scc.git] DEBUG Calling 'git reset --hard 365f0cda99b08d54e16a56e5610ae38e7742948d' 2026-02-05 09:51:08,924 [ scc.git] DEBUG HEAD is now at 365f0cda merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2026-02-05 09:51:09,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:09,256 [ scc.git] DEBUG Calling 'git merge-base b79d638b95385463319f73afc484cf4a1ee3ba13 bdf45b550f4528d17eba292491bbb620ad49022b' 2026-02-05 09:51:09,259 [ scc.git] DEBUG Calling 'git diff --name-only b79d638b95385463319f73afc484cf4a1ee3ba13..b79d638b95385463319f73afc484cf4a1ee3ba13' 2026-02-05 09:51:09,262 [ scc.git] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - src/js/models/figure_model.js - src/js/models/panel_model.js - PR #663 will-moore 'Zarr' - src/js/models/figure_model.js - src/js/models/panel_model.js - PR #664 Nirkan 'Handle many channels ' - src/js/models/panel_model.js --conflicts 2026-02-05 09:51:09,265 [ scc.config] DEBUG Found github.token 2026-02-05 09:51:09,265 [ scc.git] DEBUG Not adding comment to issue #665, already --conflicts. 2026-02-05 09:51:09,265 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:51:09,306 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:09,306 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:09,309 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:51:09,346 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:51:09,353 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1b92c50> has no local changes 2026-02-05 09:51:09,353 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 666 will-moore 'Standalone app' (stage: draft) - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) Updating 9cc36cde..b79d638b Previously merged: - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 662 will-moore 'Export script runnable without OMERO' - PR 663 will-moore 'Zarr' Conflicting PRs (not included): - PR 664 Nirkan 'Handle many channels ' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:51:09,359 [ scc.git] DEBUG [detached HEAD fef04e6e] merge master -Dorg -Ssuccess-only 2026-02-05 09:51:09,360 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:51:09,360 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:51:09,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-02-05 09:51:10,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-02-05 09:51:10,313 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:10,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-02-05 09:51:11,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:12,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:51:12,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-02-05 09:51:13,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:13,270 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:51:13,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-02-05 09:51:14,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-02-05 09:51:14,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-02-05 09:51:15,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:15,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-02-05 09:51:16,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:16,375 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-02-05 09:51:16,375 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:51:16,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-02-05 09:51:16,375 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:16,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:16,378 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:51:16,380 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:51:16,380 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:51:16,382 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:51:16,385 [ scc.git] DEBUG Already up to date. 2026-02-05 09:51:16,385 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-02-05 09:51:16,691 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-02-05 09:51:16,691 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-02-05 09:51:16,696 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-02-05 09:51:16,956 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-02-05 09:51:16,956 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-02-05 09:51:16,960 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:51:16,960 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:16,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:16,963 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-02-05 09:51:16,965 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:16,968 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-02-05 09:51:16,974 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-02-05 09:51:16,974 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:16,978 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-02-05 09:51:16,978 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-02-05 09:51:17,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:17,130 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-02-05 09:51:17,134 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:17,136 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-02-05 09:51:17,143 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:17,147 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:51:17,147 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:51:17,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:17,551 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:51:17,590 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:17,590 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:17,592 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:51:17,630 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:51:17,633 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1b87110> has no local changes 2026-02-05 09:51:17,633 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:51:17,639 [ scc.git] DEBUG [detached HEAD cade4f4] merge master -Dorg -Ssuccess-only 2026-02-05 09:51:17,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:51:17,639 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:51:18,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-02-05 09:51:18,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-02-05 09:51:19,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-02-05 09:51:19,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-02-05 09:51:19,746 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:20,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-02-05 09:51:20,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:21,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:51:22,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-02-05 09:51:22,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:22,480 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-02-05 09:51:22,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-02-05 09:51:23,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-02-05 09:51:24,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-02-05 09:51:24,193 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:24,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-02-05 09:51:25,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:25,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-02-05 09:51:26,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:26,418 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-02-05 09:51:26,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-02-05 09:51:26,923 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:27,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-02-05 09:51:28,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:28,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-02-05 09:51:29,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:29,026 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-02-05 09:51:29,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-02-05 09:51:29,589 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:30,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-02-05 09:51:30,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:31,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-02-05 09:51:31,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:31,684 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-02-05 09:51:32,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-02-05 09:51:32,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-02-05 09:51:32,688 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:33,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-02-05 09:51:33,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:34,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-02-05 09:51:34,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:34,842 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-02-05 09:51:35,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-02-05 09:51:35,394 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:36,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-02-05 09:51:36,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:37,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-02-05 09:51:37,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:37,616 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-02-05 09:51:38,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-02-05 09:51:38,111 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:38,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-02-05 09:51:39,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:39,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-02-05 09:51:40,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:40,133 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-02-05 09:51:40,133 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:51:40,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-02-05 09:51:40,133 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:40,133 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:40,136 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:51:40,138 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:51:40,138 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:51:40,141 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:51:40,144 [ scc.git] DEBUG Already up to date. 2026-02-05 09:51:40,144 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-02-05 09:51:40,417 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:40,417 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-02-05 09:51:40,421 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-02-05 09:51:40,673 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:40,673 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-02-05 09:51:40,677 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-02-05 09:51:40,947 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:40,948 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-02-05 09:51:40,952 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-02-05 09:51:41,212 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:41,213 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-02-05 09:51:41,217 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-02-05 09:51:41,477 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:41,477 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-02-05 09:51:41,481 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-02-05 09:51:41,736 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:41,736 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-02-05 09:51:41,742 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-02-05 09:51:42,026 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-05 09:51:42,026 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-02-05 09:51:42,030 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:51:42,031 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:42,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:42,033 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-02-05 09:51:42,036 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:42,038 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-02-05 09:51:42,047 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:42,051 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-02-05 09:51:42,052 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-02-05 09:51:42,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:42,224 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-02-05 09:51:42,228 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:42,231 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-02-05 09:51:42,253 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:51:42,254 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:42,268 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-02-05 09:51:42,268 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-02-05 09:51:42,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:42,670 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-02-05 09:51:42,673 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:42,675 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-02-05 09:51:42,691 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:51:42,691 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-05 09:51:42,692 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:51:42,692 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:51:42,695 [ scc.git] DEBUG Calling 'git reset --hard 29f9583861bea1321a5daa54395ac7108c8db6b8' 2026-02-05 09:51:42,700 [ scc.git] DEBUG HEAD is now at 29f9583 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-02-05 09:51:43,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:43,122 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-02-05 09:51:43,126 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-02-05 09:51:43,130 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-02-05 09:51:43,132 [ scc.config] DEBUG Found github.token 2026-02-05 09:51:43,133 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-02-05 09:51:43,133 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-02-05 09:51:43,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:43,139 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-02-05 09:51:43,158 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:51:43,159 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:43,166 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-02-05 09:51:43,166 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-02-05 09:51:43,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:43,527 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-02-05 09:51:43,530 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:43,532 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-02-05 09:51:43,547 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:51:43,548 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:51:43,553 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-02-05 09:51:43,553 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-02-05 09:51:44,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:44,013 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-02-05 09:51:44,017 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:44,019 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-02-05 09:51:44,034 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:51:44,034 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-05 09:51:44,034 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:51:44,034 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:51:44,037 [ scc.git] DEBUG Calling 'git reset --hard 9cf5feb7d01e6a6bfecc506994f99e2465f6bfa4' 2026-02-05 09:51:44,042 [ scc.git] DEBUG HEAD is now at 9cf5feb merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-02-05 09:51:44,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:44,448 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-02-05 09:51:44,450 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-02-05 09:51:44,453 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-02-05 09:51:44,455 [ scc.config] DEBUG Found github.token 2026-02-05 09:51:44,455 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-02-05 09:51:44,455 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-02-05 09:51:44,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:44,460 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-02-05 09:51:44,478 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:51:44,478 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-05 09:51:44,478 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:51:44,478 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:51:44,481 [ scc.git] DEBUG Calling 'git reset --hard 9cf5feb7d01e6a6bfecc506994f99e2465f6bfa4' 2026-02-05 09:51:44,485 [ scc.git] DEBUG HEAD is now at 9cf5feb merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-02-05 09:51:44,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:51:44,848 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-02-05 09:51:44,851 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-02-05 09:51:44,853 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-02-05 09:51:44,855 [ scc.config] DEBUG Found github.token 2026-02-05 09:51:44,855 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-02-05 09:51:44,855 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:51:44,894 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:51:44,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:51:44,896 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:51:44,933 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:51:44,937 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1b03e50> has no local changes 2026-02-05 09:51:44,937 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:51:44,943 [ scc.git] DEBUG [detached HEAD 42b50fb] merge master -Dorg -Ssuccess-only 2026-02-05 09:51:44,944 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:51:44,944 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:51:45,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-02-05 09:51:46,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/513 HTTP/1.1" 200 None 2026-02-05 09:51:46,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-02-05 09:51:47,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:47,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:51:48,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-02-05 09:51:48,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/aebb6273b9267a47a47363208fa97dc9c638a688?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:48,704 [ scc.repo] DEBUG - PR 513 jburel 'Bump Python version' 2026-02-05 09:51:49,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/512 HTTP/1.1" 200 None 2026-02-05 09:51:49,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-02-05 09:51:50,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:50,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:51:51,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-02-05 09:51:51,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/ec8f9e716c574a715529da53dff61ef178020c43?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:51,842 [ scc.repo] DEBUG - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-02-05 09:51:52,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/511 HTTP/1.1" 200 None 2026-02-05 09:51:52,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2026-02-05 09:51:53,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2026-02-05 09:51:53,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2026-02-05 09:51:54,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2026-02-05 09:51:54,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2026-02-05 09:51:54,927 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:55,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-02-05 09:51:56,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:51:56,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:51:57,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-02-05 09:51:57,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:51:57,849 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-02-05 09:51:58,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2026-02-05 09:51:58,357 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:51:58,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-02-05 09:51:59,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:00,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:52:00,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-02-05 09:52:01,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:01,239 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-02-05 09:52:01,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2026-02-05 09:52:02,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2026-02-05 09:52:02,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-02-05 09:52:03,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-02-05 09:52:03,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-02-05 09:52:04,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:04,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-02-05 09:52:05,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:05,405 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-02-05 09:52:05,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2026-02-05 09:52:06,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2026-02-05 09:52:07,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-02-05 09:52:07,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:08,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-02-05 09:52:08,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:08,564 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2026-02-05 09:52:09,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2026-02-05 09:52:09,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2026-02-05 09:52:10,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-02-05 09:52:10,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:11,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-02-05 09:52:11,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:11,608 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2026-02-05 09:52:12,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2026-02-05 09:52:12,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2026-02-05 09:52:13,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2026-02-05 09:52:13,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:14,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:52:14,315 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:52:14,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-02-05 09:52:14,316 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:14,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:14,318 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:52:14,321 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:52:14,321 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:52:14,323 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:52:14,331 [ scc.git] DEBUG Updating 7a798ce..5e2de43 2026-02-05 09:52:15,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-02-05 09:52:15,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-02-05 09:52:15,785 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2026-02-05 09:52:16,104 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:16,104 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2026-02-05 09:52:16,108 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2026-02-05 09:52:16,391 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:16,391 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2026-02-05 09:52:16,395 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-02-05 09:52:16,660 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:16,660 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-02-05 09:52:16,664 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2026-02-05 09:52:16,917 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:16,917 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2026-02-05 09:52:16,920 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2026-02-05 09:52:17,212 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:17,212 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2026-02-05 09:52:17,216 [ scc.git] DEBUG Calling 'git fetch origin pull/512/head' 2026-02-05 09:52:17,480 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:17,480 [ scc.git] DEBUG * branch refs/pull/512/head -> FETCH_HEAD 2026-02-05 09:52:17,484 [ scc.git] DEBUG Calling 'git fetch origin pull/513/head' 2026-02-05 09:52:17,739 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-05 09:52:17,739 [ scc.git] DEBUG * branch refs/pull/513/head -> FETCH_HEAD 2026-02-05 09:52:17,743 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:52:17,743 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:17,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:17,746 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-02-05 09:52:17,750 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:17,752 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-02-05 09:52:17,762 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2026-02-05 09:52:17,762 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2026-02-05 09:52:17,763 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:17,766 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2026-02-05 09:52:17,766 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2026-02-05 09:52:17,766 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2026-02-05 09:52:17,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:17,925 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2026-02-05 09:52:17,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:17,932 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2026-02-05 09:52:17,946 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2026-02-05 09:52:17,947 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-02-05 09:52:17,947 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2026-02-05 09:52:17,947 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-02-05 09:52:17,947 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:17,951 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2026-02-05 09:52:17,951 [ scc.git] DEBUG src/app/context.js | 6 +- 2026-02-05 09:52:17,951 [ scc.git] DEBUG src/app/header.html | 5 + 2026-02-05 09:52:17,951 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2026-02-05 09:52:17,951 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2026-02-05 09:52:17,951 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2026-02-05 09:52:17,951 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2026-02-05 09:52:17,951 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2026-02-05 09:52:18,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:18,335 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-02-05 09:52:18,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:18,341 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-02-05 09:52:18,351 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-02-05 09:52:18,352 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:18,355 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-02-05 09:52:18,355 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-02-05 09:52:18,355 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-02-05 09:52:18,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:18,761 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-02-05 09:52:18,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:18,767 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-02-05 09:52:18,785 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:18,793 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2026-02-05 09:52:18,793 [ scc.git] DEBUG package.json | 2 +- 2026-02-05 09:52:18,793 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2026-02-05 09:52:19,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:19,179 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-02-05 09:52:19,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:19,186 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-02-05 09:52:19,219 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:52:19,219 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-05 09:52:19,219 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:52:19,220 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:52:19,223 [ scc.git] DEBUG Calling 'git reset --hard 8cc116cd616c207a9f5d9ce1ab53a1b6f2b1509c' 2026-02-05 09:52:19,234 [ scc.git] DEBUG HEAD is now at 8cc116c merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2026-02-05 09:52:19,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:19,636 [ scc.git] DEBUG Calling 'git merge-base 5e2de43ad401fb00690a79644056e0ac15fabfd5 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-02-05 09:52:19,638 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..5e2de43ad401fb00690a79644056e0ac15fabfd5' 2026-02-05 09:52:19,641 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2026-02-05 09:52:19,643 [ scc.config] DEBUG Found github.token 2026-02-05 09:52:19,643 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2026-02-05 09:52:19,643 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ec8f9e716c574a715529da53dff61ef178020c43' 2026-02-05 09:52:19,647 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:19,649 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 512 (Replace manual changelog by automated GH release step) ec8f9e716c574a715529da53dff61ef178020c43' 2026-02-05 09:52:19,663 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:19,666 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-02-05 09:52:19,666 [ scc.git] DEBUG CHANGELOG.md | 261 ------------------------------------- 2026-02-05 09:52:19,666 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 261 deletions(-) 2026-02-05 09:52:19,666 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-02-05 09:52:20,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:20,049 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688' 2026-02-05 09:52:20,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:20,055 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688' 2026-02-05 09:52:20,067 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-02-05 09:52:20,067 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:20,070 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++-- 2026-02-05 09:52:20,070 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2026-02-05 09:52:20,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:20,449 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:52:20,487 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:20,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:20,489 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:52:20,527 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:52:20,531 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1bafbd0> has no local changes 2026-02-05 09:52:20,531 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:52:20,538 [ scc.git] DEBUG [detached HEAD 3ee192f] merge master -Dorg -Ssuccess-only 2026-02-05 09:52:20,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:52:20,538 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:52:21,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-02-05 09:52:21,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-02-05 09:52:22,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-02-05 09:52:22,056 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:52:22,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-02-05 09:52:23,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:23,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:52:24,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-02-05 09:52:24,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:24,766 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:52:25,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-02-05 09:52:25,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-02-05 09:52:26,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:26,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-02-05 09:52:27,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:27,209 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:52:27,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-02-05 09:52:28,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-02-05 09:52:28,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-02-05 09:52:29,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:30,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-02-05 09:52:30,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:30,565 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2026-02-05 09:52:30,565 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:52:30,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-02-05 09:52:30,565 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:30,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:30,568 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:52:30,570 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:52:30,570 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:52:30,573 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:52:30,576 [ scc.git] DEBUG Already up to date. 2026-02-05 09:52:30,576 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-02-05 09:52:30,847 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-02-05 09:52:30,847 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-02-05 09:52:30,851 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-02-05 09:52:31,106 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-02-05 09:52:31,106 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-02-05 09:52:31,109 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-02-05 09:52:31,362 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-02-05 09:52:31,362 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-02-05 09:52:31,365 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:52:31,366 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:31,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:31,368 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-02-05 09:52:31,371 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:31,373 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-02-05 09:52:31,381 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:31,384 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2026-02-05 09:52:31,384 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2026-02-05 09:52:31,384 [ scc.git] DEBUG requirements.txt | 2 +- 2026-02-05 09:52:31,384 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2026-02-05 09:52:31,384 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2026-02-05 09:52:31,384 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-02-05 09:52:31,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:31,537 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-02-05 09:52:31,540 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:31,542 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-02-05 09:52:31,549 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:31,552 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:52:31,552 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:52:31,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:31,959 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-02-05 09:52:31,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:31,964 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-02-05 09:52:31,971 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-02-05 09:52:31,971 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-02-05 09:52:31,971 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:52:31,971 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:52:31,974 [ scc.git] DEBUG Calling 'git reset --hard 1b295b3863e4d52eacd7522260f3c5fec4f3ce61' 2026-02-05 09:52:31,978 [ scc.git] DEBUG HEAD is now at 1b295b3 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-02-05 09:52:32,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:32,364 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-02-05 09:52:32,367 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-02-05 09:52:32,369 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-02-05 09:52:32,371 [ scc.config] DEBUG Found github.token 2026-02-05 09:52:32,372 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-02-05 09:52:32,372 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:52:32,410 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:32,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:32,413 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:52:32,451 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:52:32,454 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01d2410> has no local changes 2026-02-05 09:52:32,454 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:52:32,460 [ scc.git] DEBUG [detached HEAD e35e467] merge master -Dorg -Ssuccess-only 2026-02-05 09:52:32,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:52:32,460 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:52:32,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-02-05 09:52:33,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-02-05 09:52:34,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-02-05 09:52:34,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None 2026-02-05 09:52:35,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:35,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None 2026-02-05 09:52:36,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:36,167 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-02-05 09:52:36,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-02-05 09:52:37,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-02-05 09:52:37,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-02-05 09:52:38,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:38,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-02-05 09:52:39,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:39,396 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-02-05 09:52:39,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-02-05 09:52:40,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-02-05 09:52:40,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-02-05 09:52:41,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:42,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-02-05 09:52:42,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:42,434 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-02-05 09:52:42,434 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:52:42,434 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-02-05 09:52:42,434 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:42,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:42,436 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:52:42,438 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:52:42,439 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:52:42,441 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:52:42,448 [ scc.git] DEBUG Updating 3cd120c..55060a2 2026-02-05 09:52:43,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-02-05 09:52:43,242 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-02-05 09:52:43,514 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-02-05 09:52:43,514 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-02-05 09:52:43,518 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-02-05 09:52:43,935 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-02-05 09:52:43,935 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-02-05 09:52:43,939 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-02-05 09:52:44,197 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-02-05 09:52:44,198 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-02-05 09:52:44,201 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:52:44,202 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:44,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:44,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-02-05 09:52:44,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:44,211 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-02-05 09:52:44,222 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-02-05 09:52:44,222 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-02-05 09:52:44,222 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-02-05 09:52:44,222 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-02-05 09:52:44,223 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:52:44,223 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:52:44,225 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-05 09:52:44,229 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-02-05 09:52:44,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:44,386 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-02-05 09:52:44,390 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-05 09:52:44,393 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2026-02-05 09:52:44,395 [ scc.config] DEBUG Found github.token 2026-02-05 09:52:44,395 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-02-05 09:52:44,395 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-02-05 09:52:44,399 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:44,401 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-02-05 09:52:44,415 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-02-05 09:52:44,415 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-02-05 09:52:44,415 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-02-05 09:52:44,415 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:52:44,415 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:52:44,418 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-05 09:52:44,423 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-02-05 09:52:44,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:44,810 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2026-02-05 09:52:44,814 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-05 09:52:44,817 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-02-05 09:52:44,819 [ scc.config] DEBUG Found github.token 2026-02-05 09:52:44,819 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-02-05 09:52:44,819 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-02-05 09:52:44,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:44,824 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-02-05 09:52:44,833 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:44,836 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-02-05 09:52:44,836 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-02-05 09:52:45,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:52:45,210 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:52:45,249 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:45,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:45,251 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:52:45,288 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:52:45,292 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab02069d0> has no local changes 2026-02-05 09:52:45,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:52:45,298 [ scc.git] DEBUG [detached HEAD deed0d8] merge master -Dorg -Ssuccess-only 2026-02-05 09:52:45,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:52:45,298 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:52:45,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-02-05 09:52:46,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-02-05 09:52:46,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-02-05 09:52:47,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:47,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:52:48,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-02-05 09:52:48,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:48,971 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:52:49,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-02-05 09:52:49,508 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:52:50,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-02-05 09:52:50,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:51,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:52:51,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-02-05 09:52:52,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:52,254 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-02-05 09:52:52,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-02-05 09:52:52,779 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:52:53,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-02-05 09:52:53,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:52:54,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:52:55,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-02-05 09:52:55,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:52:55,537 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-02-05 09:52:56,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-02-05 09:52:56,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-02-05 09:52:57,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-02-05 09:52:57,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-02-05 09:52:58,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-02-05 09:52:58,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-02-05 09:52:59,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-02-05 09:52:59,089 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:52:59,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-02-05 09:52:59,090 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:59,090 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:59,092 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:52:59,094 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:52:59,094 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:52:59,097 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:52:59,100 [ scc.git] DEBUG Already up to date. 2026-02-05 09:52:59,100 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-02-05 09:52:59,367 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-02-05 09:52:59,367 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-02-05 09:52:59,371 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-02-05 09:52:59,639 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-02-05 09:52:59,639 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-02-05 09:52:59,643 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-02-05 09:52:59,906 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-02-05 09:52:59,906 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-02-05 09:52:59,910 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:52:59,911 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:52:59,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:59,913 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-02-05 09:52:59,915 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:52:59,918 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-02-05 09:52:59,925 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:52:59,928 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-02-05 09:52:59,928 [ scc.git] DEBUG package.json | 2 +- 2026-02-05 09:52:59,928 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-02-05 09:53:00,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:00,100 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-02-05 09:53:00,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:00,105 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-02-05 09:53:00,114 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-05 09:53:00,114 [ scc.git] DEBUG Auto-merging package.json 2026-02-05 09:53:00,114 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:00,118 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-02-05 09:53:00,118 [ scc.git] DEBUG package.json | 2 +- 2026-02-05 09:53:00,118 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-02-05 09:53:00,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:00,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-02-05 09:53:00,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:00,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-02-05 09:53:00,549 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:00,552 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:00,552 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:00,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:00,929 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:00,967 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:00,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:00,970 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:01,006 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:01,010 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01f47d0> has no local changes 2026-02-05 09:53:01,010 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:01,016 [ scc.git] DEBUG [detached HEAD 72e846b] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:01,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:01,017 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:01,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-02-05 09:53:01,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-02-05 09:53:01,926 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:02,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-02-05 09:53:03,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:03,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:04,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-02-05 09:53:04,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:04,499 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:53:04,499 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:04,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-02-05 09:53:04,499 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:04,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:04,502 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:04,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:04,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:04,507 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:04,509 [ scc.git] DEBUG Already up to date. 2026-02-05 09:53:04,509 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-02-05 09:53:04,786 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-02-05 09:53:04,786 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-02-05 09:53:04,790 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:04,790 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:04,790 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:04,792 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-02-05 09:53:04,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:04,797 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-02-05 09:53:04,803 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:04,806 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:04,806 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:04,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:04,963 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:05,002 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:05,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:05,004 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:05,040 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:05,043 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab0215f10> has no local changes 2026-02-05 09:53:05,043 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:05,048 [ scc.git] DEBUG [detached HEAD d27bcf3] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:05,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:05,049 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:05,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-02-05 09:53:06,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2026-02-05 09:53:06,045 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:06,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-02-05 09:53:07,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:07,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:08,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-02-05 09:53:08,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:09,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-02-05 09:53:09,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2026-02-05 09:53:09,778 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:53:10,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2026-02-05 09:53:10,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2026-02-05 09:53:11,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-02-05 09:53:11,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:12,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:12,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-02-05 09:53:13,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:13,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-02-05 09:53:14,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2026-02-05 09:53:14,225 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2026-02-05 09:53:14,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-02-05 09:53:14,735 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:14,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-02-05 09:53:14,735 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:14,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:14,738 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:14,740 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:14,740 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:14,743 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:14,746 [ scc.git] DEBUG Already up to date. 2026-02-05 09:53:14,746 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2026-02-05 09:53:15,017 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-02-05 09:53:15,017 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2026-02-05 09:53:15,021 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2026-02-05 09:53:15,279 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-02-05 09:53:15,279 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2026-02-05 09:53:15,284 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:15,284 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:15,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:15,286 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2026-02-05 09:53:15,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:15,291 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2026-02-05 09:53:15,298 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:15,301 [ scc.git] DEBUG setup.py | 4 +- 2026-02-05 09:53:15,301 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2026-02-05 09:53:15,301 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2026-02-05 09:53:15,301 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2026-02-05 09:53:15,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:15,452 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2026-02-05 09:53:15,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:15,457 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2026-02-05 09:53:15,464 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:15,466 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:15,466 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:15,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:15,875 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:15,911 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:15,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:15,913 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:15,952 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:15,955 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01f7b90> has no local changes 2026-02-05 09:53:15,955 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:15,961 [ scc.git] DEBUG [detached HEAD 00c8962] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:15,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:15,962 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:16,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-02-05 09:53:17,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-02-05 09:53:17,088 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:17,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-02-05 09:53:18,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:18,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:19,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-02-05 09:53:19,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:19,745 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:53:20,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-02-05 09:53:20,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-02-05 09:53:21,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-02-05 09:53:21,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:22,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-02-05 09:53:22,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:22,740 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-02-05 09:53:22,740 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:22,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-02-05 09:53:22,740 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:22,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:22,743 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:22,745 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:22,745 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:22,747 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:22,750 [ scc.git] DEBUG Already up to date. 2026-02-05 09:53:22,750 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-02-05 09:53:23,179 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-02-05 09:53:23,179 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-02-05 09:53:23,184 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-02-05 09:53:23,440 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-02-05 09:53:23,440 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-02-05 09:53:23,444 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:23,444 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:23,444 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:23,446 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-02-05 09:53:23,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:23,451 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging setup.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-02-05 09:53:23,459 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:53:23,459 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:53:23,461 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-02-05 09:53:23,465 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-02-05 09:53:23,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:23,633 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-02-05 09:53:23,636 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-02-05 09:53:23,638 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/views.py - omero_signup/signup_settings.py - setup.py - omero_signup/urls.py --conflicts 2026-02-05 09:53:23,640 [ scc.config] DEBUG Found github.token 2026-02-05 09:53:23,640 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-02-05 09:53:23,640 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-02-05 09:53:23,643 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:23,645 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-02-05 09:53:23,651 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:23,653 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:23,653 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:24,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:24,041 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:24,079 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:24,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:24,081 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:24,116 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:24,120 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab0219610> has no local changes 2026-02-05 09:53:24,120 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:24,125 [ scc.git] DEBUG [detached HEAD 5ba60c4] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:24,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:24,125 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:24,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-02-05 09:53:25,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-02-05 09:53:25,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-02-05 09:53:26,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-02-05 09:53:26,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2026-02-05 09:53:27,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:27,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:27,874 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:27,874 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-02-05 09:53:27,874 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:27,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:27,877 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:27,879 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:27,880 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:27,882 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:27,889 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-02-05 09:53:28,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-02-05 09:53:29,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-02-05 09:53:30,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-02-05 09:53:30,265 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:30,265 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:30,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:30,267 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:30,305 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:30,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:30,307 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:30,345 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:30,348 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01d2610> has no local changes 2026-02-05 09:53:30,348 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:30,354 [ scc.git] DEBUG [detached HEAD 67e1456] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:30,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:30,354 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:30,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-02-05 09:53:31,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-02-05 09:53:31,298 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:31,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-02-05 09:53:32,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:32,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:33,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-02-05 09:53:33,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:33,954 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:53:33,955 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:33,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-02-05 09:53:33,955 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:33,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:33,957 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:33,960 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:33,960 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:33,962 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:33,965 [ scc.git] DEBUG Already up to date. 2026-02-05 09:53:33,965 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-02-05 09:53:34,254 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-02-05 09:53:34,254 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-02-05 09:53:34,259 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:34,259 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:34,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:34,262 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-02-05 09:53:34,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:34,266 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-02-05 09:53:34,272 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:34,275 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:34,275 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:34,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:34,447 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:34,486 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:34,486 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:34,488 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:34,525 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:34,528 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1b88990> has no local changes 2026-02-05 09:53:34,528 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:34,534 [ scc.git] DEBUG [detached HEAD 7867bdb] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:34,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:34,534 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:35,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-02-05 09:53:35,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-02-05 09:53:35,547 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:36,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-02-05 09:53:36,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:37,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:37,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-02-05 09:53:38,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:38,202 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:53:38,202 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:38,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-02-05 09:53:38,203 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:38,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:38,205 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:38,208 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:38,208 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:38,210 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:38,217 [ scc.git] DEBUG Updating deab817..160d894 2026-02-05 09:53:39,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-02-05 09:53:39,139 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-02-05 09:53:39,408 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-02-05 09:53:39,408 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-02-05 09:53:39,412 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:39,413 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:39,413 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:39,415 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-02-05 09:53:39,417 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:39,419 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-02-05 09:53:39,426 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:39,429 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:39,429 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:39,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:39,595 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:39,633 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:39,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:39,635 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:39,672 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:39,675 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1c11d90> has no local changes 2026-02-05 09:53:39,675 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:39,681 [ scc.git] DEBUG [detached HEAD da1aeee] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:39,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:39,681 [ scc.git] INFO Overriding base-branch from master to main 2026-02-05 09:53:39,681 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:40,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-02-05 09:53:40,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-02-05 09:53:41,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-02-05 09:53:41,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-02-05 09:53:42,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:42,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:43,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-02-05 09:53:43,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:43,878 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-02-05 09:53:44,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-02-05 09:53:44,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-02-05 09:53:45,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-02-05 09:53:45,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-02-05 09:53:46,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:46,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-02-05 09:53:47,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:47,349 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-02-05 09:53:47,349 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:47,349 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-02-05 09:53:47,349 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:47,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:47,352 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-02-05 09:53:47,355 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:47,355 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-02-05 09:53:47,357 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-02-05 09:53:47,365 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-02-05 09:53:48,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-02-05 09:53:48,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-02-05 09:53:48,861 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-02-05 09:53:49,186 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-02-05 09:53:49,186 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-02-05 09:53:49,190 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-02-05 09:53:49,448 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-02-05 09:53:49,448 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-02-05 09:53:49,452 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:49,452 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:49,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:49,455 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-02-05 09:53:49,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:49,459 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-02-05 09:53:49,466 [ scc.git] DEBUG Auto-merging README.rst 2026-02-05 09:53:49,466 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-02-05 09:53:49,466 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-02-05 09:53:49,466 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-02-05 09:53:49,466 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-05 09:53:49,467 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-05 09:53:49,469 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-02-05 09:53:49,472 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-02-05 09:53:49,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:49,644 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-02-05 09:53:49,646 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-02-05 09:53:49,649 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-02-05 09:53:49,651 [ scc.config] DEBUG Found github.token 2026-02-05 09:53:49,651 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-02-05 09:53:49,651 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-02-05 09:53:49,654 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:49,656 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-02-05 09:53:49,663 [ scc.git] DEBUG Auto-merging README.rst 2026-02-05 09:53:49,663 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-02-05 09:53:49,663 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:49,666 [ scc.git] DEBUG README.rst | 3 + 2026-02-05 09:53:49,666 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-02-05 09:53:49,666 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-02-05 09:53:49,666 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-02-05 09:53:49,666 [ scc.git] DEBUG setup.py | 5 +- 2026-02-05 09:53:49,666 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-02-05 09:53:49,666 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-02-05 09:53:50,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:50,104 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:50,143 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:50,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:50,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:50,182 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:50,185 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab025af10> has no local changes 2026-02-05 09:53:50,185 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:50,190 [ scc.git] DEBUG [detached HEAD bce3b7f] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:50,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:50,191 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:50,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-02-05 09:53:51,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-02-05 09:53:51,262 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:51,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-02-05 09:53:52,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:53:52,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:53:53,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-02-05 09:53:54,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:53:54,039 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:53:54,039 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:53:54,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-02-05 09:53:54,040 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:54,040 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:54,042 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:53:54,045 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:53:54,045 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:53:54,047 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:53:54,050 [ scc.git] DEBUG Already up to date. 2026-02-05 09:53:54,050 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-02-05 09:53:54,340 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-02-05 09:53:54,340 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-02-05 09:53:54,344 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:53:54,344 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:54,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:54,346 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-02-05 09:53:54,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:54,351 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-02-05 09:53:54,356 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:53:54,359 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:53:54,359 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:53:54,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:53:54,522 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:53:54,559 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:53:54,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:53:54,561 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:53:54,598 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:53:54,601 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab02a1cd0> has no local changes 2026-02-05 09:53:54,601 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:53:54,608 [ scc.git] DEBUG [detached HEAD 6871afd] merge master -Dorg -Ssuccess-only 2026-02-05 09:53:54,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:53:54,608 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:53:55,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-02-05 09:53:55,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-02-05 09:53:55,596 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-05 09:53:58,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-02-05 09:54:00,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-05 09:54:01,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-05 09:54:02,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-02-05 09:54:02,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-02-05 09:54:02,556 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:02,556 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:54:02,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-02-05 09:54:02,556 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:02,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:02,559 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:54:02,561 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:54:02,561 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:54:02,564 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:54:02,567 [ scc.git] DEBUG Already up to date. 2026-02-05 09:54:02,567 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-02-05 09:54:02,848 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-02-05 09:54:02,848 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-02-05 09:54:02,852 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:54:02,852 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:02,852 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:02,854 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-02-05 09:54:02,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:02,859 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-02-05 09:54:02,865 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-05 09:54:02,867 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-05 09:54:02,867 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-05 09:54:03,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:03,020 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:54:03,058 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:03,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:03,060 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:54:03,097 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:54:03,100 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab029e9d0> has no local changes 2026-02-05 09:54:03,100 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:54:03,105 [ scc.git] DEBUG [detached HEAD 783e114] merge master -Dorg -Ssuccess-only 2026-02-05 09:54:03,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:03,106 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:54:03,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-02-05 09:54:03,456 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:54:03,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-02-05 09:54:03,456 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:03,456 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:03,458 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-05 09:54:03,461 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:54:03,461 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-05 09:54:03,463 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-05 09:54:03,466 [ scc.git] DEBUG Already up to date. 2026-02-05 09:54:03,466 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:54:03,466 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:03,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:03,468 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:54:03,504 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:03,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:03,506 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:54:03,543 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:54:03,546 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab029e590> has no local changes 2026-02-05 09:54:03,546 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:54:03,551 [ scc.git] DEBUG [detached HEAD ad87c9e] merge master -Dorg -Ssuccess-only 2026-02-05 09:54:03,552 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:03,552 [ scc.git] INFO Overriding base-branch from master to develop 2026-02-05 09:54:03,552 [ scc.repo] DEBUG ## PRs found: 2026-02-05 09:54:04,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-02-05 09:54:04,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2026-02-05 09:54:05,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2026-02-05 09:54:05,064 [ scc.repo] DEBUG ## Branches found: 2026-02-05 09:54:05,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-02-05 09:54:05,064 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:05,064 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:05,067 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-02-05 09:54:05,069 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-05 09:54:05,069 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-02-05 09:54:05,072 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-02-05 09:54:05,084 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-02-05 09:54:05,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-02-05 09:54:06,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-02-05 09:54:07,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-02-05 09:54:08,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-02-05 09:54:09,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-02-05 09:54:09,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-02-05 09:54:10,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-02-05 09:54:10,697 [ scc.git] DEBUG ## Unique users: [] 2026-02-05 09:54:10,697 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:10,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:10,700 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-05 09:54:10,738 [ scc.git] DEBUG Get sha1 of %s 2026-02-05 09:54:10,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-05 09:54:10,740 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:54:10,777 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:54:10,781 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab02b95d0> has no local changes 2026-02-05 09:54:10,781 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:54:10,786 [ scc.git] DEBUG [detached HEAD 8ea8da0] merge master -Dorg -Ssuccess-only 2026-02-05 09:54:10,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:10,787 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-05 09:54:10,856 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-02-05 09:54:11,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:11,120 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-02-05 09:54:11,122 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-02-05 09:54:11,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:11,518 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-02-05 09:54:11,520 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-02-05 09:54:12,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:12,024 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-02-05 09:54:12,026 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-02-05 09:54:12,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:12,431 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-02-05 09:54:12,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:12,835 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-02-05 09:54:12,837 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-02-05 09:54:13,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:13,322 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-02-05 09:54:13,324 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-02-05 09:54:13,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:13,728 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-02-05 09:54:13,730 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-02-05 09:54:14,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:14,165 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-02-05 09:54:14,167 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-02-05 09:54:14,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:14,564 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-02-05 09:54:14,566 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-02-05 09:54:14,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:14,993 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-02-05 09:54:14,995 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-02-05 09:54:15,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:15,407 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-02-05 09:54:15,408 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-02-05 09:54:15,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:15,838 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-02-05 09:54:15,840 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-02-05 09:54:16,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:16,251 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-02-05 09:54:16,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:16,686 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-02-05 09:54:17,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:17,085 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-02-05 09:54:17,087 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-02-05 09:54:17,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:17,489 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-02-05 09:54:17,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:17,894 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-02-05 09:54:18,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:18,316 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-02-05 09:54:18,318 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-02-05 09:54:18,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:18,720 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-02-05 09:54:18,722 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-02-05 09:54:19,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:19,120 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-02-05 09:54:19,122 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-02-05 09:54:19,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:19,549 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-02-05 09:54:19,551 [ scc.config] DEBUG Found submodule.scripts.url 2026-02-05 09:54:19,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-05 09:54:19,990 [ scc.config] DEBUG Found submodule.scripts.branch 2026-02-05 09:54:19,990 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-05 09:54:20,066 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab44cfe50> has local changes 2026-02-05 09:54:20,067 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 182 will-moore 'Revert "Remove support for Plate import"' (exclude comment) - PR 181 will-moore 'Add labels support for import' (exclude comment) - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..10df940 Previously merged: - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 192 jburel 'Set Omero pixel size' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Excluded PRs: - PR 666 will-moore 'Standalone app' (stage: draft) - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) Updating 9cc36cde..b79d638b Previously merged: - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 662 will-moore 'Export script runnable without OMERO' - PR 663 will-moore 'Zarr' Conflicting PRs (not included): - PR 664 Nirkan 'Handle many channels ' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)' 2026-02-05 09:54:20,078 [ scc.git] DEBUG [detached HEAD 06d17d5] merge master -Dorg -Ssuccess-only 2026-02-05 09:54:20,078 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-plugins 2026-02-05 09:54:20,079 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-02-05 09:54:20,079 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-02-05 09:54:20,079 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-02-05 09:54:20,079 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-02-05 09:54:20,079 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-02-05 09:54:20,079 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-02-05 09:54:20,079 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-02-05 09:54:20,079 [ scc.merge] INFO 2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-02-05 09:54:20,079 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' (exclude comment) 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment) 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-02-05 09:54:20,080 [ scc.merge] INFO Updating 11d3587..10df940 2026-02-05 09:54:20,080 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:54:20,080 [ scc.merge] INFO 2026-02-05 09:54:20,080 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-02-05 09:54:20,080 [ scc.merge] INFO 2026-02-05 09:54:20,080 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-02-05 09:54:20,080 [ scc.merge] INFO 2026-02-05 09:54:20,080 [ scc.merge] INFO Repository: ome/omero-figure 2026-02-05 09:54:20,080 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' (stage: draft) 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2026-02-05 09:54:20,080 [ scc.merge] INFO Updating 9cc36cde..b79d638b 2026-02-05 09:54:20,080 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-02-05 09:54:20,081 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Repository: ome/omero-gallery 2026-02-05 09:54:20,081 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-02-05 09:54:20,081 [ scc.merge] INFO 2026-02-05 09:54:20,081 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-02-05 09:54:20,081 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2026-02-05 09:54:20,081 [ scc.merge] INFO Updating 7a798ce..5e2de43 2026-02-05 09:54:20,081 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Repository: ome/omero-mapr 2026-02-05 09:54:20,082 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-02-05 09:54:20,082 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Repository: ome/omero-metadata 2026-02-05 09:54:20,082 [ scc.merge] INFO Updating 3cd120c..55060a2 2026-02-05 09:54:20,082 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Repository: ome/omero-parade 2026-02-05 09:54:20,082 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-02-05 09:54:20,082 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,082 [ scc.merge] INFO 2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-rois 2026-02-05 09:54:20,083 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-signup 2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-02-05 09:54:20,083 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2026-02-05 09:54:20,083 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-02-05 09:54:20,083 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-upload 2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-02-05 09:54:20,083 [ scc.merge] INFO Updating deab817..160d894 2026-02-05 09:54:20,083 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-02-05 09:54:20,083 [ scc.merge] INFO 2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-02-05 09:54:20,084 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-02-05 09:54:20,084 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-02-05 09:54:20,084 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-02-05 09:54:20,084 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-02-05 09:54:20,084 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Merged PRs: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-02-05 09:54:20,084 [ scc.merge] INFO Already up to date. 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: ome/scripts 2026-02-05 09:54:20,084 [ scc.merge] INFO Excluded PRs: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2026-02-05 09:54:20,084 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-02-05 09:54:20,084 [ scc.merge] INFO Previously merged: 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] INFO 2026-02-05 09:54:20,084 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-02-05 09:54:20,085 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-02-05 09:54:20,087 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-02-05 09:54:20,089 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-02-05 09:54:20,091 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-02-05 09:54:20,093 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-02-05 09:54:20,095 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-02-05 09:54:20,097 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-02-05 09:54:20,100 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-02-05 09:54:20,102 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-02-05 09:54:20,104 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-02-05 09:54:20,106 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-02-05 09:54:20,108 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-02-05 09:54:20,110 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-02-05 09:54:20,112 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-02-05 09:54:20,115 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-02-05 09:54:20,117 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-02-05 09:54:20,119 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-02-05 09:54:20,121 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-02-05 09:54:20,123 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-02-05 09:54:20,126 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-02-05 09:54:20,128 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-02-05 09:54:20,130 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-05 09:54:20,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-02-05 09:54:20,132 [ scc.git] DEBUG Calling 'git remote' 2026-02-05 09:54:20,134 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 08fbe8f] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 580508a] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-02-05 09:55:09,152 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-02-05 09:55:18,986 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-02-05 09:55:21,660 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-05 09:55:26,595 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-05 09:56:12,351 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS