Console Output
Skipping 184 KB..
Full Log "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:23,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:52:24,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-02-05 09:52:24,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:24,766 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:52:25,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-02-05 09:52:25,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-02-05 09:52:26,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:26,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-02-05 09:52:27,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:27,209 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:52:27,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-02-05 09:52:28,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-02-05 09:52:28,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-05 09:52:29,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:30,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-05 09:52:30,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:30,565 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-02-05 09:52:30,565 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:52:30,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-05 09:52:30,565 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:30,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:30,568 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:52:30,570 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:52:30,570 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:52:30,573 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:52:30,576 [ scc.git] DEBUG Already up to date.
2026-02-05 09:52:30,576 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-02-05 09:52:30,847 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-05 09:52:30,847 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-02-05 09:52:30,851 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-02-05 09:52:31,106 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-05 09:52:31,106 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-02-05 09:52:31,109 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-02-05 09:52:31,362 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-05 09:52:31,362 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-02-05 09:52:31,365 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:52:31,366 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:31,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:31,368 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-05 09:52:31,371 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:31,373 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-05 09:52:31,381 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:52:31,384 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-02-05 09:52:31,384 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-02-05 09:52:31,384 [ scc.git] DEBUG requirements.txt | 2 +-
2026-02-05 09:52:31,384 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-02-05 09:52:31,384 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-02-05 09:52:31,384 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-02-05 09:52:31,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:52:31,537 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-05 09:52:31,540 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:31,542 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-05 09:52:31,549 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:52:31,552 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:52:31,552 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:52:31,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:52:31,959 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-05 09:52:31,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:31,964 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-05 09:52:31,971 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-02-05 09:52:31,971 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-02-05 09:52:31,971 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 09:52:31,971 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 09:52:31,974 [ scc.git] DEBUG Calling 'git reset --hard 1b295b3863e4d52eacd7522260f3c5fec4f3ce61'
2026-02-05 09:52:31,978 [ scc.git] DEBUG HEAD is now at 1b295b3 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-02-05 09:52:32,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:52:32,364 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-05 09:52:32,367 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-02-05 09:52:32,369 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-02-05 09:52:32,371 [ scc.config] DEBUG Found github.token
2026-02-05 09:52:32,372 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-02-05 09:52:32,372 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:52:32,410 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:32,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:32,413 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:52:32,451 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:52:32,454 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01d2410> has no local changes
2026-02-05 09:52:32,454 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:52:32,460 [ scc.git] DEBUG [detached HEAD e35e467] merge master -Dorg -Ssuccess-only
2026-02-05 09:52:32,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:52:32,460 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:52:32,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-02-05 09:52:33,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-02-05 09:52:34,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-02-05 09:52:34,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-05 09:52:35,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:35,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-05 09:52:36,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:36,167 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-05 09:52:36,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-02-05 09:52:37,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-02-05 09:52:37,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-05 09:52:38,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:38,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-05 09:52:39,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:39,396 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-05 09:52:39,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-02-05 09:52:40,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-02-05 09:52:40,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-05 09:52:41,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:42,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-05 09:52:42,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:42,434 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-05 09:52:42,434 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:52:42,434 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-05 09:52:42,434 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:42,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:42,436 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:52:42,438 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:52:42,439 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:52:42,441 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:52:42,448 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-02-05 09:52:43,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-02-05 09:52:43,242 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-02-05 09:52:43,514 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-05 09:52:43,514 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-02-05 09:52:43,518 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-02-05 09:52:43,935 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-05 09:52:43,935 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-02-05 09:52:43,939 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-02-05 09:52:44,197 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-05 09:52:44,198 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-02-05 09:52:44,201 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:52:44,202 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:44,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:44,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-05 09:52:44,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:44,211 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-05 09:52:44,222 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-02-05 09:52:44,222 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-02-05 09:52:44,222 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-05 09:52:44,222 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-05 09:52:44,223 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 09:52:44,223 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 09:52:44,225 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 09:52:44,229 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-05 09:52:44,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:52:44,386 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-05 09:52:44,390 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 09:52:44,393 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-02-05 09:52:44,395 [ scc.config] DEBUG Found github.token
2026-02-05 09:52:44,395 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-02-05 09:52:44,395 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-05 09:52:44,399 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:44,401 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-05 09:52:44,415 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-05 09:52:44,415 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-05 09:52:44,415 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-02-05 09:52:44,415 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 09:52:44,415 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 09:52:44,418 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 09:52:44,423 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-05 09:52:44,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:52:44,810 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-05 09:52:44,814 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 09:52:44,817 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-02-05 09:52:44,819 [ scc.config] DEBUG Found github.token
2026-02-05 09:52:44,819 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-02-05 09:52:44,819 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-05 09:52:44,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:44,824 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-05 09:52:44,833 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:52:44,836 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-02-05 09:52:44,836 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-02-05 09:52:45,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:52:45,210 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:52:45,249 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:45,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:45,251 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:52:45,288 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:52:45,292 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab02069d0> has no local changes
2026-02-05 09:52:45,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:52:45,298 [ scc.git] DEBUG [detached HEAD deed0d8] merge master -Dorg -Ssuccess-only
2026-02-05 09:52:45,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:52:45,298 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:52:45,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-02-05 09:52:46,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-02-05 09:52:46,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-05 09:52:47,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:47,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:52:48,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-05 09:52:48,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:48,971 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:52:49,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-02-05 09:52:49,508 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:52:50,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-05 09:52:50,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:51,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:52:51,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-05 09:52:52,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:52,254 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-05 09:52:52,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-02-05 09:52:52,779 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:52:53,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-05 09:52:53,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:52:54,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:52:55,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-05 09:52:55,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:52:55,537 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-05 09:52:56,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-02-05 09:52:56,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-02-05 09:52:57,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-02-05 09:52:57,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-02-05 09:52:58,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-02-05 09:52:58,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-02-05 09:52:59,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-02-05 09:52:59,089 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:52:59,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-05 09:52:59,090 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:59,090 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:59,092 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:52:59,094 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:52:59,094 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:52:59,097 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:52:59,100 [ scc.git] DEBUG Already up to date.
2026-02-05 09:52:59,100 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-02-05 09:52:59,367 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-05 09:52:59,367 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-02-05 09:52:59,371 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-02-05 09:52:59,639 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-05 09:52:59,639 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-02-05 09:52:59,643 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-02-05 09:52:59,906 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-05 09:52:59,906 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-02-05 09:52:59,910 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:52:59,911 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:52:59,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:59,913 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-05 09:52:59,915 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:52:59,918 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-05 09:52:59,925 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:52:59,928 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-02-05 09:52:59,928 [ scc.git] DEBUG package.json | 2 +-
2026-02-05 09:52:59,928 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-02-05 09:53:00,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:00,100 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-02-05 09:53:00,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:00,105 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-02-05 09:53:00,114 [ scc.git] DEBUG Auto-merging package-lock.json
2026-02-05 09:53:00,114 [ scc.git] DEBUG Auto-merging package.json
2026-02-05 09:53:00,114 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:00,118 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-02-05 09:53:00,118 [ scc.git] DEBUG package.json | 2 +-
2026-02-05 09:53:00,118 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-02-05 09:53:00,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:00,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-05 09:53:00,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:00,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-05 09:53:00,549 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:00,552 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:00,552 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:00,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:00,929 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:00,967 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:00,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:00,970 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:01,006 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:01,010 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01f47d0> has no local changes
2026-02-05 09:53:01,010 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:01,016 [ scc.git] DEBUG [detached HEAD 72e846b] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:01,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:01,017 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:01,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-02-05 09:53:01,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-02-05 09:53:01,926 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:02,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-05 09:53:03,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:03,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:04,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-05 09:53:04,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:04,499 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:53:04,499 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:04,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-05 09:53:04,499 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:04,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:04,502 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:04,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:04,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:04,507 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:04,509 [ scc.git] DEBUG Already up to date.
2026-02-05 09:53:04,509 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-02-05 09:53:04,786 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-02-05 09:53:04,786 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-02-05 09:53:04,790 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:04,790 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:04,790 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:04,792 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-05 09:53:04,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:04,797 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-05 09:53:04,803 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:04,806 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:04,806 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:04,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:04,963 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:05,002 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:05,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:05,004 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:05,040 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:05,043 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab0215f10> has no local changes
2026-02-05 09:53:05,043 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:05,048 [ scc.git] DEBUG [detached HEAD d27bcf3] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:05,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:05,049 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:05,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-02-05 09:53:06,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-02-05 09:53:06,045 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:06,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-05 09:53:07,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:07,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:08,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-05 09:53:08,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:09,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-05 09:53:09,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-02-05 09:53:09,778 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:53:10,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-02-05 09:53:10,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-02-05 09:53:11,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-05 09:53:11,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:12,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:12,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-05 09:53:13,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:13,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-05 09:53:14,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-02-05 09:53:14,225 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-02-05 09:53:14,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-02-05 09:53:14,735 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:14,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-05 09:53:14,735 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:14,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:14,738 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:14,740 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:14,740 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:14,743 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:14,746 [ scc.git] DEBUG Already up to date.
2026-02-05 09:53:14,746 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-02-05 09:53:15,017 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-05 09:53:15,017 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-02-05 09:53:15,021 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-02-05 09:53:15,279 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-05 09:53:15,279 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-02-05 09:53:15,284 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:15,284 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:15,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:15,286 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-05 09:53:15,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:15,291 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-05 09:53:15,298 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:15,301 [ scc.git] DEBUG setup.py | 4 +-
2026-02-05 09:53:15,301 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-02-05 09:53:15,301 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-02-05 09:53:15,301 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-02-05 09:53:15,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:15,452 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-02-05 09:53:15,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:15,457 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-02-05 09:53:15,464 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:15,466 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:15,466 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:15,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:15,875 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:15,911 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:15,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:15,913 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:15,952 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:15,955 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01f7b90> has no local changes
2026-02-05 09:53:15,955 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:15,961 [ scc.git] DEBUG [detached HEAD 00c8962] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:15,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:15,962 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:16,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-02-05 09:53:17,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-02-05 09:53:17,088 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:17,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-05 09:53:18,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:18,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:19,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-05 09:53:19,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:19,745 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:53:20,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-02-05 09:53:20,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-02-05 09:53:21,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-05 09:53:21,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:22,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-05 09:53:22,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:22,740 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-05 09:53:22,740 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:22,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-05 09:53:22,740 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:22,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:22,743 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:22,745 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:22,745 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:22,747 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:22,750 [ scc.git] DEBUG Already up to date.
2026-02-05 09:53:22,750 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-05 09:53:23,179 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-05 09:53:23,179 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-05 09:53:23,184 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-05 09:53:23,440 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-05 09:53:23,440 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-05 09:53:23,444 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:23,444 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:23,444 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:23,446 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-05 09:53:23,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:23,451 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG Auto-merging setup.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-02-05 09:53:23,459 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 09:53:23,459 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 09:53:23,461 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-05 09:53:23,465 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-02-05 09:53:23,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:23,633 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-05 09:53:23,636 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-05 09:53:23,638 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/urls.py
--conflicts
2026-02-05 09:53:23,640 [ scc.config] DEBUG Found github.token
2026-02-05 09:53:23,640 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-02-05 09:53:23,640 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-05 09:53:23,643 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:23,645 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-05 09:53:23,651 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:23,653 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:23,653 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:24,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:24,041 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:24,079 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:24,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:24,081 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:24,116 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:24,120 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab0219610> has no local changes
2026-02-05 09:53:24,120 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:24,125 [ scc.git] DEBUG [detached HEAD 5ba60c4] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:24,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:24,125 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:24,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-02-05 09:53:25,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-02-05 09:53:25,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-02-05 09:53:26,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-02-05 09:53:26,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-02-05 09:53:27,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:27,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:27,874 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:27,874 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-05 09:53:27,874 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:27,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:27,877 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:27,879 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:27,880 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:27,882 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:27,889 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-02-05 09:53:28,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-02-05 09:53:29,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-02-05 09:53:30,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-02-05 09:53:30,265 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:30,265 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:30,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:30,267 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:30,305 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:30,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:30,307 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:30,345 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:30,348 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab01d2610> has no local changes
2026-02-05 09:53:30,348 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:30,354 [ scc.git] DEBUG [detached HEAD 67e1456] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:30,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:30,354 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:30,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-02-05 09:53:31,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-02-05 09:53:31,298 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:31,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-05 09:53:32,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:32,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:33,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-05 09:53:33,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:33,954 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:53:33,955 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:33,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-05 09:53:33,955 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:33,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:33,957 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:33,960 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:33,960 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:33,962 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:33,965 [ scc.git] DEBUG Already up to date.
2026-02-05 09:53:33,965 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-05 09:53:34,254 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-02-05 09:53:34,254 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-05 09:53:34,259 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:34,259 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:34,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:34,262 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-05 09:53:34,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:34,266 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-05 09:53:34,272 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:34,275 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:34,275 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:34,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:34,447 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:34,486 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:34,486 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:34,488 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:34,525 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:34,528 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1b88990> has no local changes
2026-02-05 09:53:34,528 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:34,534 [ scc.git] DEBUG [detached HEAD 7867bdb] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:34,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:34,534 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:35,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-02-05 09:53:35,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-02-05 09:53:35,547 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:36,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-05 09:53:36,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:37,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:37,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-05 09:53:38,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:38,202 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:53:38,202 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:38,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-05 09:53:38,203 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:38,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:38,205 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:38,208 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:38,208 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:38,210 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:38,217 [ scc.git] DEBUG Updating deab817..160d894
2026-02-05 09:53:39,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-02-05 09:53:39,139 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-05 09:53:39,408 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-02-05 09:53:39,408 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-05 09:53:39,412 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:39,413 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:39,413 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:39,415 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-05 09:53:39,417 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:39,419 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-05 09:53:39,426 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:39,429 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:39,429 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:39,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:39,595 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:39,633 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:39,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:39,635 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:39,672 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:39,675 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab1c11d90> has no local changes
2026-02-05 09:53:39,675 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:39,681 [ scc.git] DEBUG [detached HEAD da1aeee] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:39,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:39,681 [ scc.git] INFO Overriding base-branch from master to main
2026-02-05 09:53:39,681 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:40,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-02-05 09:53:40,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-02-05 09:53:41,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-02-05 09:53:41,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-05 09:53:42,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:42,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:43,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-05 09:53:43,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:43,878 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-02-05 09:53:44,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-02-05 09:53:44,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-02-05 09:53:45,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-02-05 09:53:45,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-05 09:53:46,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:46,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-05 09:53:47,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:47,349 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-05 09:53:47,349 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:47,349 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-05 09:53:47,349 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:47,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:47,352 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-02-05 09:53:47,355 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:47,355 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-02-05 09:53:47,357 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-02-05 09:53:47,365 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-02-05 09:53:48,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-02-05 09:53:48,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-02-05 09:53:48,861 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-02-05 09:53:49,186 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-05 09:53:49,186 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-02-05 09:53:49,190 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-02-05 09:53:49,448 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-05 09:53:49,448 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-02-05 09:53:49,452 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:49,452 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:49,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:49,455 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-05 09:53:49,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:49,459 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-05 09:53:49,466 [ scc.git] DEBUG Auto-merging README.rst
2026-02-05 09:53:49,466 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-02-05 09:53:49,466 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-02-05 09:53:49,466 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-05 09:53:49,466 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 09:53:49,467 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 09:53:49,469 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-05 09:53:49,472 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-02-05 09:53:49,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:49,644 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-05 09:53:49,646 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-05 09:53:49,649 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#45](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-02-05 09:53:49,651 [ scc.config] DEBUG Found github.token
2026-02-05 09:53:49,651 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-02-05 09:53:49,651 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-05 09:53:49,654 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:49,656 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-05 09:53:49,663 [ scc.git] DEBUG Auto-merging README.rst
2026-02-05 09:53:49,663 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-05 09:53:49,663 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:49,666 [ scc.git] DEBUG README.rst | 3 +
2026-02-05 09:53:49,666 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-02-05 09:53:49,666 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-02-05 09:53:49,666 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-02-05 09:53:49,666 [ scc.git] DEBUG setup.py | 5 +-
2026-02-05 09:53:49,666 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-02-05 09:53:49,666 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-02-05 09:53:50,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:50,104 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:50,143 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:50,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:50,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:50,182 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:50,185 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab025af10> has no local changes
2026-02-05 09:53:50,185 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:50,190 [ scc.git] DEBUG [detached HEAD bce3b7f] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:50,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:50,191 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:50,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-02-05 09:53:51,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-02-05 09:53:51,262 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:51,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-05 09:53:52,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:53:52,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:53:53,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-05 09:53:54,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:53:54,039 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:53:54,039 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:53:54,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-05 09:53:54,040 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:54,040 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:54,042 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:53:54,045 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:53:54,045 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:53:54,047 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:53:54,050 [ scc.git] DEBUG Already up to date.
2026-02-05 09:53:54,050 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-02-05 09:53:54,340 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-02-05 09:53:54,340 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-02-05 09:53:54,344 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:53:54,344 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:54,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:54,346 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-05 09:53:54,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:54,351 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-05 09:53:54,356 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:53:54,359 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:53:54,359 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:53:54,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:53:54,522 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:53:54,559 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:53:54,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:53:54,561 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:53:54,598 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:53:54,601 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab02a1cd0> has no local changes
2026-02-05 09:53:54,601 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:53:54,608 [ scc.git] DEBUG [detached HEAD 6871afd] merge master -Dorg -Ssuccess-only
2026-02-05 09:53:54,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:53:54,608 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:53:55,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-02-05 09:53:55,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-02-05 09:53:55,596 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 09:53:58,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-05 09:54:00,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 09:54:01,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 09:54:02,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-05 09:54:02,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-02-05 09:54:02,556 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:02,556 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:54:02,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-05 09:54:02,556 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:02,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:02,559 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:54:02,561 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:54:02,561 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:54:02,564 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:54:02,567 [ scc.git] DEBUG Already up to date.
2026-02-05 09:54:02,567 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-02-05 09:54:02,848 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-02-05 09:54:02,848 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-02-05 09:54:02,852 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:54:02,852 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:02,852 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:02,854 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-05 09:54:02,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:02,859 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-05 09:54:02,865 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 09:54:02,867 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 09:54:02,867 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 09:54:03,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:03,020 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:54:03,058 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:03,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:03,060 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:54:03,097 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:54:03,100 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab029e9d0> has no local changes
2026-02-05 09:54:03,100 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:54:03,105 [ scc.git] DEBUG [detached HEAD 783e114] merge master -Dorg -Ssuccess-only
2026-02-05 09:54:03,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:03,106 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:54:03,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-02-05 09:54:03,456 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:54:03,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-05 09:54:03,456 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:03,456 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:03,458 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 09:54:03,461 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:54:03,461 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 09:54:03,463 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 09:54:03,466 [ scc.git] DEBUG Already up to date.
2026-02-05 09:54:03,466 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:54:03,466 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:03,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:03,468 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:54:03,504 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:03,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:03,506 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:54:03,543 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:54:03,546 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab029e590> has no local changes
2026-02-05 09:54:03,546 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:54:03,551 [ scc.git] DEBUG [detached HEAD ad87c9e] merge master -Dorg -Ssuccess-only
2026-02-05 09:54:03,552 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:03,552 [ scc.git] INFO Overriding base-branch from master to develop
2026-02-05 09:54:03,552 [ scc.repo] DEBUG ## PRs found:
2026-02-05 09:54:04,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-02-05 09:54:04,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-02-05 09:54:05,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-02-05 09:54:05,064 [ scc.repo] DEBUG ## Branches found:
2026-02-05 09:54:05,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-05 09:54:05,064 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:05,064 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:05,067 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-02-05 09:54:05,069 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 09:54:05,069 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-02-05 09:54:05,072 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-02-05 09:54:05,084 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-02-05 09:54:05,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-02-05 09:54:06,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-02-05 09:54:07,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-02-05 09:54:08,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-02-05 09:54:09,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-02-05 09:54:09,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-02-05 09:54:10,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-02-05 09:54:10,697 [ scc.git] DEBUG ## Unique users: []
2026-02-05 09:54:10,697 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:10,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:10,700 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 09:54:10,738 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 09:54:10,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 09:54:10,740 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:54:10,777 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:54:10,781 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab02b95d0> has no local changes
2026-02-05 09:54:10,781 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:54:10,786 [ scc.git] DEBUG [detached HEAD 8ea8da0] merge master -Dorg -Ssuccess-only
2026-02-05 09:54:10,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:10,787 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 09:54:10,856 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-02-05 09:54:11,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:11,120 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-02-05 09:54:11,122 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-02-05 09:54:11,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:11,518 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-02-05 09:54:11,520 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-02-05 09:54:12,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:12,024 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-02-05 09:54:12,026 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-02-05 09:54:12,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:12,431 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-02-05 09:54:12,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:12,835 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-02-05 09:54:12,837 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-02-05 09:54:13,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:13,322 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-02-05 09:54:13,324 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-02-05 09:54:13,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:13,728 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-02-05 09:54:13,730 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-02-05 09:54:14,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:14,165 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-02-05 09:54:14,167 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-02-05 09:54:14,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:14,564 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-02-05 09:54:14,566 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-02-05 09:54:14,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:14,993 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-02-05 09:54:14,995 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-02-05 09:54:15,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:15,407 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-02-05 09:54:15,408 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-02-05 09:54:15,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:15,838 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-02-05 09:54:15,840 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-02-05 09:54:16,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:16,251 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-02-05 09:54:16,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:16,686 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-02-05 09:54:17,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:17,085 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-02-05 09:54:17,087 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-02-05 09:54:17,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:17,489 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-02-05 09:54:17,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:17,894 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-02-05 09:54:18,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:18,316 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-02-05 09:54:18,318 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-02-05 09:54:18,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:18,720 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-02-05 09:54:18,722 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-02-05 09:54:19,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:19,120 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-02-05 09:54:19,122 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-02-05 09:54:19,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:19,549 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-02-05 09:54:19,551 [ scc.config] DEBUG Found submodule.scripts.url
2026-02-05 09:54:19,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 09:54:19,990 [ scc.config] DEBUG Found submodule.scripts.branch
2026-02-05 09:54:19,990 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 09:54:20,066 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7faab44cfe50> has local changes
2026-02-05 09:54:20,067 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 182 will-moore 'Revert "Remove support for Plate import"' (exclude comment)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..10df940
Previously merged:
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 192 jburel 'Set Omero pixel size'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 666 will-moore 'Standalone app' (stage: draft)
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..b79d638b
Previously merged:
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 662 will-moore 'Export script runnable without OMERO'
- PR 663 will-moore 'Zarr'
Conflicting PRs (not included):
- PR 664 Nirkan 'Handle many channels '
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#45 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/45/)'
2026-02-05 09:54:20,078 [ scc.git] DEBUG [detached HEAD 06d17d5] merge master -Dorg -Ssuccess-only
2026-02-05 09:54:20,078 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-plugins
2026-02-05 09:54:20,079 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-02-05 09:54:20,079 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-02-05 09:54:20,079 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-02-05 09:54:20,079 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-02-05 09:54:20,079 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-02-05 09:54:20,079 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-02-05 09:54:20,079 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-02-05 09:54:20,079 [ scc.merge] INFO
2026-02-05 09:54:20,079 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-02-05 09:54:20,079 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' (exclude comment)
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-02-05 09:54:20,079 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-02-05 09:54:20,080 [ scc.merge] INFO Updating 11d3587..10df940
2026-02-05 09:54:20,080 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:54:20,080 [ scc.merge] INFO
2026-02-05 09:54:20,080 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-02-05 09:54:20,080 [ scc.merge] INFO
2026-02-05 09:54:20,080 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-02-05 09:54:20,080 [ scc.merge] INFO
2026-02-05 09:54:20,080 [ scc.merge] INFO Repository: ome/omero-figure
2026-02-05 09:54:20,080 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' (stage: draft)
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-02-05 09:54:20,080 [ scc.merge] INFO Updating 9cc36cde..b79d638b
2026-02-05 09:54:20,080 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-02-05 09:54:20,080 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-02-05 09:54:20,081 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Repository: ome/omero-gallery
2026-02-05 09:54:20,081 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-02-05 09:54:20,081 [ scc.merge] INFO
2026-02-05 09:54:20,081 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-02-05 09:54:20,081 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-02-05 09:54:20,081 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-02-05 09:54:20,081 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,081 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Repository: ome/omero-mapr
2026-02-05 09:54:20,082 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-02-05 09:54:20,082 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Repository: ome/omero-metadata
2026-02-05 09:54:20,082 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-02-05 09:54:20,082 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Repository: ome/omero-parade
2026-02-05 09:54:20,082 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-02-05 09:54:20,082 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,082 [ scc.merge] INFO
2026-02-05 09:54:20,082 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-05 09:54:20,082 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-rois
2026-02-05 09:54:20,083 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-signup
2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-02-05 09:54:20,083 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-02-05 09:54:20,083 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-02-05 09:54:20,083 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-upload
2026-02-05 09:54:20,083 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-02-05 09:54:20,083 [ scc.merge] INFO Updating deab817..160d894
2026-02-05 09:54:20,083 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-02-05 09:54:20,083 [ scc.merge] INFO
2026-02-05 09:54:20,083 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,083 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-02-05 09:54:20,084 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-02-05 09:54:20,084 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-02-05 09:54:20,084 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-02-05 09:54:20,084 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-02-05 09:54:20,084 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Merged PRs:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-02-05 09:54:20,084 [ scc.merge] INFO Already up to date.
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO Repository: ome/scripts
2026-02-05 09:54:20,084 [ scc.merge] INFO Excluded PRs:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-02-05 09:54:20,084 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-02-05 09:54:20,084 [ scc.merge] INFO Previously merged:
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-02-05 09:54:20,084 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] INFO
2026-02-05 09:54:20,084 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-02-05 09:54:20,085 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-02-05 09:54:20,087 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-02-05 09:54:20,089 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-02-05 09:54:20,091 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-02-05 09:54:20,093 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-02-05 09:54:20,095 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-02-05 09:54:20,097 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-02-05 09:54:20,100 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-02-05 09:54:20,102 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-05 09:54:20,104 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-05 09:54:20,106 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-05 09:54:20,108 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-05 09:54:20,110 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-05 09:54:20,112 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-05 09:54:20,115 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-05 09:54:20,117 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-05 09:54:20,119 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-05 09:54:20,121 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-05 09:54:20,123 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-05 09:54:20,126 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-05 09:54:20,128 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-05 09:54:20,130 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 09:54:20,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-05 09:54:20,132 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 09:54:20,134 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 08fbe8f] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 580508a] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-02-05 09:55:09,152 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-02-05 09:55:18,986 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-02-05 09:55:21,660 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-05 09:55:26,595 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-05 09:56:12,351 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
