Skipping 217 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-07-19 00:30:48,303 [ scc.git] DEBUG Calling 'git merge-base bb94cf8da960e3283090038b04432f301560f5e4 45d08b7e29871ecff0386975c975dacd0865bcc4'
2025-07-19 00:30:48,306 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..bb94cf8da960e3283090038b04432f301560f5e4'
2025-07-19 00:30:48,309 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- PR #499 dependabot[bot] 'Bump nanoid and mocha'
- package-lock.json
--conflicts
2025-07-19 00:30:48,311 [ scc.config] DEBUG Found github.token
2025-07-19 00:30:48,312 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts.
2025-07-19 00:30:48,312 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:30:48,353 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:30:48,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:30:48,355 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:30:48,394 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:30:48,401 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a65e0d0> has no local changes
2025-07-19 00:30:48,401 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:30:48,408 [ scc.git] DEBUG [detached HEAD 1fdd962] merge master -Dorg -Ssuccess-only
2025-07-19 00:30:48,409 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:30:48,409 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:30:48,554 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:48,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-07-19 00:30:49,104 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:49,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-07-19 00:30:49,586 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:49,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-07-19 00:30:50,153 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:50,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:30:50,648 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:50,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-07-19 00:30:51,107 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:51,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:30:51,338 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:30:51,590 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:51,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-07-19 00:30:52,108 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:52,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-07-19 00:30:52,594 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:52,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-07-19 00:30:53,141 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:53,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:30:53,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:53,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-07-19 00:30:54,173 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:54,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:30:54,366 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-07-19 00:30:54,366 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:30:54,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-07-19 00:30:54,367 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:30:54,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:30:54,370 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:30:54,372 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:30:54,372 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:30:54,375 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:30:54,378 [ scc.git] DEBUG Already up to date.
2025-07-19 00:30:54,378 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-07-19 00:30:54,667 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-07-19 00:30:54,667 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-07-19 00:30:54,672 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-07-19 00:30:54,956 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-07-19 00:30:54,956 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-07-19 00:30:54,960 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:30:54,960 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:30:54,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:30:54,963 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-07-19 00:30:54,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:30:54,969 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-07-19 00:30:54,978 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:30:54,982 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-07-19 00:30:54,982 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-07-19 00:30:54,982 [ scc.git] DEBUG requirements.txt | 2 +-
2025-07-19 00:30:54,982 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-07-19 00:30:54,982 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-07-19 00:30:54,982 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-07-19 00:30:54,983 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:55,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:30:55,166 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-07-19 00:30:55,170 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:30:55,172 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-07-19 00:30:55,182 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:30:55,185 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-07-19 00:30:55,185 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-07-19 00:30:55,417 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:55,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:30:55,588 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:30:55,630 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:30:55,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:30:55,632 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:30:55,671 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:30:55,674 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a90d750> has no local changes
2025-07-19 00:30:55,675 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:30:55,681 [ scc.git] DEBUG [detached HEAD 273fd34] merge master -Dorg -Ssuccess-only
2025-07-19 00:30:55,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:30:55,681 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:30:55,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:56,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-07-19 00:30:56,414 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:56,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-07-19 00:30:56,911 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:57,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-07-19 00:30:57,430 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:57,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-07-19 00:30:57,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:58,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:30:58,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:58,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-07-19 00:30:58,924 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:59,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:30:59,116 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-07-19 00:30:59,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:30:59,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-07-19 00:30:59,893 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:00,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-07-19 00:31:00,381 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:00,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-07-19 00:31:00,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:01,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:01,434 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:01,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-07-19 00:31:02,015 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:02,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:02,259 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-07-19 00:31:02,259 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:02,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-07-19 00:31:02,259 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:02,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:02,262 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:02,264 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:02,265 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:02,268 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:02,275 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-07-19 00:31:02,510 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:03,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-07-19 00:31:03,001 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-07-19 00:31:03,291 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-07-19 00:31:03,291 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-07-19 00:31:03,296 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-07-19 00:31:03,617 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-07-19 00:31:03,617 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-07-19 00:31:03,622 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:03,622 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:03,622 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:03,625 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-07-19 00:31:03,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:03,633 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-07-19 00:31:03,646 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-07-19 00:31:03,646 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-07-19 00:31:03,646 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-07-19 00:31:03,646 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-07-19 00:31:03,647 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-07-19 00:31:03,647 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-07-19 00:31:03,650 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-07-19 00:31:03,654 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-07-19 00:31:03,656 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:03,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:03,842 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-07-19 00:31:03,846 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-07-19 00:31:03,850 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-07-19 00:31:03,852 [ scc.config] DEBUG Found github.token
2025-07-19 00:31:03,852 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-07-19 00:31:03,852 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-07-19 00:31:03,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:03,859 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-07-19 00:31:03,874 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-07-19 00:31:03,874 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-07-19 00:31:03,874 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-07-19 00:31:03,875 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-07-19 00:31:03,875 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-07-19 00:31:03,879 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-07-19 00:31:03,884 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-07-19 00:31:04,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:04,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:04,275 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-07-19 00:31:04,279 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-07-19 00:31:04,282 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-07-19 00:31:04,284 [ scc.config] DEBUG Found github.token
2025-07-19 00:31:04,285 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-07-19 00:31:04,285 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:04,327 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:04,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:04,329 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:04,369 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:04,374 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a7ed450> has no local changes
2025-07-19 00:31:04,374 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:04,380 [ scc.git] DEBUG [detached HEAD f34a3cf] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:04,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:04,381 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:04,526 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:04,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-07-19 00:31:05,114 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:05,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-07-19 00:31:05,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:05,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-07-19 00:31:06,123 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:06,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:06,619 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:06,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:07,195 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:07,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-07-19 00:31:07,727 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:08,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:08,198 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:31:08,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:08,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-07-19 00:31:08,695 [ scc.repo] DEBUG # ... Include label: dependencies
2025-07-19 00:31:08,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:09,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-07-19 00:31:09,559 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:09,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:10,092 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:10,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:10,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:10,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-07-19 00:31:11,197 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:11,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:11,401 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-07-19 00:31:11,652 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:11,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-07-19 00:31:11,910 [ scc.repo] DEBUG # ... Include label: dependencies
2025-07-19 00:31:12,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:12,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-07-19 00:31:12,767 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:13,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:13,316 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:13,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:13,939 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:14,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-07-19 00:31:14,461 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:14,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:14,683 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-07-19 00:31:14,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:15,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-07-19 00:31:15,502 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:15,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-07-19 00:31:15,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:16,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-07-19 00:31:16,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:16,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-07-19 00:31:16,965 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:17,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-07-19 00:31:17,477 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:17,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-07-19 00:31:17,950 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:18,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-07-19 00:31:18,225 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:18,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-07-19 00:31:18,225 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:18,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:18,228 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:18,230 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:18,230 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:18,234 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:18,236 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:18,237 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-07-19 00:31:18,532 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-07-19 00:31:18,532 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-07-19 00:31:18,537 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-07-19 00:31:18,819 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-07-19 00:31:18,819 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-07-19 00:31:18,823 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-07-19 00:31:19,111 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-07-19 00:31:19,112 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-07-19 00:31:19,116 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:19,116 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:19,116 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:19,118 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-07-19 00:31:19,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:19,124 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-07-19 00:31:19,132 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:31:19,136 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-07-19 00:31:19,136 [ scc.git] DEBUG package.json | 2 +-
2025-07-19 00:31:19,136 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-07-19 00:31:19,137 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:19,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:19,345 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-07-19 00:31:19,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:19,350 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-07-19 00:31:19,361 [ scc.git] DEBUG Auto-merging package-lock.json
2025-07-19 00:31:19,361 [ scc.git] DEBUG Auto-merging package.json
2025-07-19 00:31:19,362 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:31:19,365 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-07-19 00:31:19,365 [ scc.git] DEBUG package.json | 2 +-
2025-07-19 00:31:19,366 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-07-19 00:31:19,596 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:19,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:19,769 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-07-19 00:31:19,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:19,775 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-07-19 00:31:19,784 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:31:19,787 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-07-19 00:31:19,787 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-07-19 00:31:20,020 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:20,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:20,204 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:20,246 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:20,246 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:20,249 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:20,290 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:20,294 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a62fb50> has no local changes
2025-07-19 00:31:20,295 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:20,301 [ scc.git] DEBUG [detached HEAD 2c5db2e] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:20,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:20,302 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:20,455 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:20,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-07-19 00:31:20,648 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:20,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-07-19 00:31:20,648 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:20,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:20,650 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:20,653 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:20,653 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:20,656 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:20,658 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:20,659 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:20,659 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:20,659 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:20,661 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:20,701 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:20,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:20,703 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:20,742 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:20,745 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a7eda90> has no local changes
2025-07-19 00:31:20,745 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:20,751 [ scc.git] DEBUG [detached HEAD ef4d7e3] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:20,751 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:20,751 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:20,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:21,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-07-19 00:31:21,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:21,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-07-19 00:31:22,037 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:22,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-07-19 00:31:22,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:22,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-07-19 00:31:22,769 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:22,769 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-07-19 00:31:22,769 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:22,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:22,772 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:22,774 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:22,774 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:22,778 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:22,781 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:22,781 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:22,781 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:22,781 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:22,783 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:22,824 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:22,825 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:22,827 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:22,868 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:22,871 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd169553790> has no local changes
2025-07-19 00:31:22,871 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 33 jo-mueller 'Add roi to array functions' (user: jo-mueller)
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:22,877 [ scc.git] DEBUG [detached HEAD f78a24e] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:22,877 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:22,878 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:23,019 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:23,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-07-19 00:31:23,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:23,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-07-19 00:31:24,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:24,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-07-19 00:31:24,503 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:24,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-07-19 00:31:25,098 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:25,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:25,589 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:25,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-07-19 00:31:26,060 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:26,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:26,264 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-07-19 00:31:26,264 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:26,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-07-19 00:31:26,264 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:26,264 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:26,267 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:26,270 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:26,270 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:26,273 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:26,276 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:26,276 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-07-19 00:31:26,562 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-07-19 00:31:26,562 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-07-19 00:31:26,566 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:26,566 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:26,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:26,569 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-07-19 00:31:26,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:26,575 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-07-19 00:31:26,583 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG Auto-merging setup.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-07-19 00:31:26,584 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-07-19 00:31:26,584 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-07-19 00:31:26,587 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-07-19 00:31:26,591 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-07-19 00:31:26,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:26,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:26,762 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-07-19 00:31:26,765 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-07-19 00:31:26,769 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/views.py
- omero_signup/urls.py
- setup.py
--conflicts
2025-07-19 00:31:26,771 [ scc.config] DEBUG Found github.token
2025-07-19 00:31:26,771 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-07-19 00:31:26,771 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:26,811 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:26,811 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:26,813 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:26,851 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:26,855 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a751910> has no local changes
2025-07-19 00:31:26,855 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:26,862 [ scc.git] DEBUG [detached HEAD 0a8df1c] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:26,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:26,862 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:27,013 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:27,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-07-19 00:31:27,574 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:27,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-07-19 00:31:28,060 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:28,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-07-19 00:31:28,694 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:28,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:29,220 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:29,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:29,727 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:30,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-07-19 00:31:30,295 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:30,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:30,499 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-07-19 00:31:30,751 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:31,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-07-19 00:31:31,302 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:31,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-07-19 00:31:31,783 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:32,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-07-19 00:31:32,380 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:32,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:32,861 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:33,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:33,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:33,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-07-19 00:31:34,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:34,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-07-19 00:31:34,570 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:34,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-07-19 00:31:35,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:35,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-07-19 00:31:35,584 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:35,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-07-19 00:31:36,136 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:36,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:36,607 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:36,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-07-19 00:31:37,107 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:37,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:37,289 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-07-19 00:31:37,290 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:37,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-07-19 00:31:37,290 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:37,290 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:37,293 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:37,295 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:37,295 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:37,298 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:37,301 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:37,301 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-07-19 00:31:37,590 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-07-19 00:31:37,590 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-07-19 00:31:37,594 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-07-19 00:31:37,876 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-07-19 00:31:37,876 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-07-19 00:31:37,880 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:37,880 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:37,880 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:37,882 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-07-19 00:31:37,886 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:37,889 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-07-19 00:31:37,901 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-07-19 00:31:37,905 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-07-19 00:31:37,906 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-07-19 00:31:37,906 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-07-19 00:31:37,907 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-07-19 00:31:37,907 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-07-19 00:31:37,907 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-07-19 00:31:37,907 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-07-19 00:31:37,907 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-07-19 00:31:38,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:38,100 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-07-19 00:31:38,105 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:38,107 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-07-19 00:31:38,117 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:31:38,120 [ scc.git] DEBUG docker | 1 +
2025-07-19 00:31:38,120 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-07-19 00:31:38,351 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:38,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:38,578 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:38,620 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:38,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:38,623 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:38,661 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:38,665 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a751d90> has no local changes
2025-07-19 00:31:38,665 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:38,672 [ scc.git] DEBUG [detached HEAD 540923e] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:38,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:38,672 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:38,829 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:39,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-07-19 00:31:39,054 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:39,054 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-07-19 00:31:39,054 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:39,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:39,057 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:39,059 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:39,059 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:39,062 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:39,065 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:39,065 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:39,065 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:39,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:39,067 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:39,106 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:39,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:39,109 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:39,148 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:39,151 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd169575a50> has no local changes
2025-07-19 00:31:39,151 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:39,158 [ scc.git] DEBUG [detached HEAD caab074] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:39,158 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:39,158 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:39,306 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:39,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-07-19 00:31:39,510 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:39,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-07-19 00:31:39,510 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:39,511 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:39,513 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:39,515 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:39,515 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:39,518 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:39,526 [ scc.git] DEBUG Updating deab817..160d894
2025-07-19 00:31:39,761 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:40,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-07-19 00:31:40,180 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:40,180 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:40,181 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:40,183 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:40,225 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:40,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:40,227 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:40,269 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:40,272 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16a750290> has no local changes
2025-07-19 00:31:40,273 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:40,279 [ scc.git] DEBUG [detached HEAD 3a5481f] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:40,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:40,279 [ scc.git] INFO Overriding base-branch from master to main
2025-07-19 00:31:40,279 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:40,431 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:40,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-07-19 00:31:40,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:41,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-07-19 00:31:41,468 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:41,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-07-19 00:31:41,954 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:42,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-07-19 00:31:42,504 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:42,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:43,056 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:43,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:43,563 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:43,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-07-19 00:31:44,060 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:44,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-07-19 00:31:44,644 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:44,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-07-19 00:31:45,111 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:45,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-07-19 00:31:45,681 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:45,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:46,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:46,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-07-19 00:31:46,720 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:46,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:46,920 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-07-19 00:31:46,921 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:46,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-07-19 00:31:46,921 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:46,921 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:46,924 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-07-19 00:31:46,926 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:46,926 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-07-19 00:31:46,929 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-07-19 00:31:46,932 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:46,932 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-07-19 00:31:47,235 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-07-19 00:31:47,235 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-07-19 00:31:47,239 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:47,239 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:47,239 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:47,242 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-07-19 00:31:47,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:47,248 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-07-19 00:31:47,255 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-07-19 00:31:47,255 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-07-19 00:31:47,256 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-07-19 00:31:47,256 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-07-19 00:31:47,259 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-07-19 00:31:47,263 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-07-19 00:31:47,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:47,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:47,472 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-07-19 00:31:47,475 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-07-19 00:31:47,478 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-07-19 00:31:47,480 [ scc.config] DEBUG Found github.token
2025-07-19 00:31:47,481 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-07-19 00:31:47,481 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:47,522 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:47,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:47,524 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:47,562 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:47,566 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16958b7d0> has no local changes
2025-07-19 00:31:47,566 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:47,572 [ scc.git] DEBUG [detached HEAD eef51bb] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:47,573 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:47,573 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:47,724 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:47,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-07-19 00:31:47,921 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:47,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-07-19 00:31:47,921 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:47,921 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:47,924 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:47,926 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:47,926 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:47,929 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:47,932 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:47,932 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:47,932 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:47,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:47,934 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:47,975 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:47,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:47,977 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:48,017 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:48,021 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16958a550> has no local changes
2025-07-19 00:31:48,021 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:48,027 [ scc.git] DEBUG [detached HEAD 49cc685] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:48,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:48,027 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:48,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:48,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-07-19 00:31:48,369 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:48,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-07-19 00:31:48,369 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:48,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:48,372 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:48,374 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:48,374 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:48,377 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:48,380 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:48,380 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:48,380 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:48,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:48,383 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:48,421 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:48,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:48,424 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:48,462 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:48,465 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd169542510> has no local changes
2025-07-19 00:31:48,465 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:48,472 [ scc.git] DEBUG [detached HEAD 1832a98] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:48,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:48,472 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:48,620 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:48,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-07-19 00:31:49,169 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:49,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-07-19 00:31:49,663 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:49,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-07-19 00:31:50,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:50,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-07-19 00:31:50,729 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:50,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:51,205 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:51,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-07-19 00:31:51,727 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:51,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:51,927 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-07-19 00:31:51,927 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:31:51,928 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-07-19 00:31:51,928 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:51,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:51,930 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-19 00:31:51,933 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:31:51,933 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-19 00:31:51,936 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-19 00:31:51,939 [ scc.git] DEBUG Already up to date.
2025-07-19 00:31:51,939 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-07-19 00:31:52,225 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-07-19 00:31:52,225 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-07-19 00:31:52,230 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:31:52,230 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:52,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:52,232 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-07-19 00:31:52,235 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:52,237 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-07-19 00:31:52,246 [ scc.git] DEBUG Auto-merging Dockerfile
2025-07-19 00:31:52,246 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-07-19 00:31:52,246 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-07-19 00:31:52,246 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-07-19 00:31:52,249 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-07-19 00:31:52,254 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-07-19 00:31:52,256 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:52,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:31:52,491 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-07-19 00:31:52,494 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-07-19 00:31:52,497 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-07-19 00:31:52,499 [ scc.config] DEBUG Found github.token
2025-07-19 00:31:52,499 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-07-19 00:31:52,499 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:31:52,541 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:31:52,541 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:31:52,543 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:31:52,583 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:31:52,587 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16959cb90> has no local changes
2025-07-19 00:31:52,587 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:31:52,594 [ scc.git] DEBUG [detached HEAD 3eeaf42] merge master -Dorg -Ssuccess-only
2025-07-19 00:31:52,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:31:52,594 [ scc.git] INFO Overriding base-branch from master to develop
2025-07-19 00:31:52,594 [ scc.repo] DEBUG ## PRs found:
2025-07-19 00:31:52,742 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:53,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-07-19 00:31:53,447 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:53,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-07-19 00:31:53,935 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:54,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-07-19 00:31:54,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:54,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-07-19 00:31:54,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:55,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:55,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:55,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-19 00:31:55,974 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:56,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-07-19 00:31:56,440 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:56,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:56,628 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-07-19 00:31:56,879 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:57,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-07-19 00:31:57,362 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:57,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-07-19 00:31:57,822 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:58,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-07-19 00:31:58,392 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:58,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-19 00:31:58,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:59,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-07-19 00:31:59,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:31:59,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-07-19 00:31:59,552 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-07-19 00:31:59,804 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:00,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-07-19 00:32:00,275 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:00,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-07-19 00:32:00,791 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:01,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-07-19 00:32:01,328 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:01,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-07-19 00:32:01,576 [ scc.repo] DEBUG ## Branches found:
2025-07-19 00:32:01,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-07-19 00:32:01,576 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:32:01,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:32:01,579 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-07-19 00:32:01,582 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-19 00:32:01,582 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-07-19 00:32:01,585 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-07-19 00:32:01,596 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-07-19 00:32:01,826 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:02,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-07-19 00:32:02,520 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:02,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-07-19 00:32:02,949 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-07-19 00:32:03,254 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-07-19 00:32:03,254 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-07-19 00:32:03,258 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-07-19 00:32:03,556 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-07-19 00:32:03,557 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-07-19 00:32:03,561 [ scc.git] DEBUG ## Unique users: []
2025-07-19 00:32:03,561 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:32:03,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:32:03,564 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-07-19 00:32:03,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:32:03,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-07-19 00:32:03,583 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-07-19 00:32:03,584 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-07-19 00:32:03,585 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-07-19 00:32:03,587 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-07-19 00:32:03,591 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-07-19 00:32:03,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:03,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:03,766 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-07-19 00:32:03,771 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-07-19 00:32:03,775 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#481](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-07-19 00:32:03,778 [ scc.config] DEBUG Found github.token
2025-07-19 00:32:03,778 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-07-19 00:32:03,778 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-07-19 00:32:03,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:32:03,785 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-07-19 00:32:03,794 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-19 00:32:03,797 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-07-19 00:32:03,797 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-07-19 00:32:04,017 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:04,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:04,210 [ scc.git] DEBUG Calling 'git submodule update'
2025-07-19 00:32:04,254 [ scc.git] DEBUG Get sha1 of %s
2025-07-19 00:32:04,254 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-19 00:32:04,256 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:32:04,297 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:32:04,301 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd1695e8210> has no local changes
2025-07-19 00:32:04,301 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:32:04,308 [ scc.git] DEBUG [detached HEAD fb8da80] merge master -Dorg -Ssuccess-only
2025-07-19 00:32:04,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:04,308 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-19 00:32:04,386 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-07-19 00:32:04,461 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:04,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:04,639 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-07-19 00:32:04,641 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-07-19 00:32:04,885 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:05,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:05,079 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-07-19 00:32:05,081 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-07-19 00:32:05,325 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:05,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:05,501 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-07-19 00:32:05,503 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-07-19 00:32:05,748 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:05,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:05,942 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-07-19 00:32:06,185 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:06,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:06,352 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-07-19 00:32:06,354 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-07-19 00:32:06,599 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:06,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:06,777 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-07-19 00:32:06,779 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-07-19 00:32:07,023 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:07,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:07,196 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-07-19 00:32:07,198 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-07-19 00:32:07,442 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:07,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:07,625 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-07-19 00:32:07,627 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-07-19 00:32:07,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:08,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:08,046 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-07-19 00:32:08,048 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-07-19 00:32:08,293 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:08,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:08,468 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-07-19 00:32:08,470 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-07-19 00:32:08,714 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:08,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:08,881 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-07-19 00:32:08,883 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-07-19 00:32:09,128 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:09,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:09,318 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-07-19 00:32:09,320 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-07-19 00:32:09,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:09,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:09,748 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-07-19 00:32:09,992 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:10,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:10,169 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-07-19 00:32:10,414 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:10,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:10,601 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-07-19 00:32:10,603 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-07-19 00:32:10,848 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:11,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:11,037 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-07-19 00:32:11,281 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:11,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:11,485 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-07-19 00:32:11,729 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:11,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:11,914 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-07-19 00:32:11,916 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-07-19 00:32:12,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:12,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:12,368 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-07-19 00:32:12,370 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-07-19 00:32:12,615 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:12,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:12,792 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-07-19 00:32:12,794 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-07-19 00:32:13,039 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:13,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:13,220 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-07-19 00:32:13,222 [ scc.config] DEBUG Found submodule.scripts.url
2025-07-19 00:32:13,467 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-19 00:32:13,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-19 00:32:13,657 [ scc.config] DEBUG Found submodule.scripts.branch
2025-07-19 00:32:13,657 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-07-19 00:32:13,744 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd16d126210> has local changes
2025-07-19 00:32:13,744 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 638 Rdornier 'Fix arrow opacity' (user: Rdornier)
- PR 637 Rdornier 'Fix scalebar position' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..3e8fa730
Previously merged:
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 33 jo-mueller 'Add roi to array functions' (user: jo-mueller)
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#481 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/481/)'
2025-07-19 00:32:13,757 [ scc.git] DEBUG [detached HEAD 8cb0e29] merge master -Dorg -Ssuccess-only
2025-07-19 00:32:13,758 [ scc.merge] INFO Repository: ome/omero-plugins
2025-07-19 00:32:13,758 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-07-19 00:32:13,758 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,758 [ scc.merge] INFO
2025-07-19 00:32:13,758 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,758 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-07-19 00:32:13,758 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-07-19 00:32:13,758 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-07-19 00:32:13,758 [ scc.merge] INFO
2025-07-19 00:32:13,758 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-07-19 00:32:13,758 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,758 [ scc.merge] INFO
2025-07-19 00:32:13,758 [ scc.merge] INFO
2025-07-19 00:32:13,758 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-07-19 00:32:13,758 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,758 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-07-19 00:32:13,758 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,758 [ scc.merge] INFO
2025-07-19 00:32:13,758 [ scc.merge] INFO
2025-07-19 00:32:13,758 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-07-19 00:32:13,758 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,758 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-07-19 00:32:13,758 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-07-19 00:32:13,758 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,759 [ scc.merge] INFO
2025-07-19 00:32:13,759 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-07-19 00:32:13,759 [ scc.merge] INFO
2025-07-19 00:32:13,759 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-07-19 00:32:13,759 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-07-19 00:32:13,759 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-07-19 00:32:13,759 [ scc.merge] INFO Previously merged:
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:32:13,759 [ scc.merge] INFO
2025-07-19 00:32:13,759 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-07-19 00:32:13,759 [ scc.merge] INFO
2025-07-19 00:32:13,759 [ scc.merge] INFO Repository: ome/omero-figure
2025-07-19 00:32:13,759 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' (user: Rdornier)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' (user: Rdornier)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-07-19 00:32:13,759 [ scc.merge] INFO Updating 9cc36cde..3e8fa730
2025-07-19 00:32:13,759 [ scc.merge] INFO Previously merged:
2025-07-19 00:32:13,759 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-07-19 00:32:13,760 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Repository: ome/omero-gallery
2025-07-19 00:32:13,760 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-07-19 00:32:13,760 [ scc.merge] INFO
2025-07-19 00:32:13,760 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-07-19 00:32:13,760 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,760 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-07-19 00:32:13,761 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-07-19 00:32:13,761 [ scc.merge] INFO Previously merged:
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Repository: ome/omero-mapr
2025-07-19 00:32:13,761 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-07-19 00:32:13,761 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Repository: ome/omero-metadata
2025-07-19 00:32:13,761 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-07-19 00:32:13,761 [ scc.merge] INFO Previously merged:
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-07-19 00:32:13,761 [ scc.merge] INFO
2025-07-19 00:32:13,761 [ scc.merge] INFO Repository: ome/omero-parade
2025-07-19 00:32:13,761 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,761 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-07-19 00:32:13,762 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-07-19 00:32:13,762 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Repository: ome/omero-rois
2025-07-19 00:32:13,762 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' (user: jo-mueller)
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-07-19 00:32:13,762 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Repository: ome/omero-signup
2025-07-19 00:32:13,762 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-07-19 00:32:13,762 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-07-19 00:32:13,762 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,762 [ scc.merge] INFO
2025-07-19 00:32:13,762 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-07-19 00:32:13,762 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: ome/omero-upload
2025-07-19 00:32:13,763 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-07-19 00:32:13,763 [ scc.merge] INFO Updating deab817..160d894
2025-07-19 00:32:13,763 [ scc.merge] INFO Previously merged:
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-07-19 00:32:13,763 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-07-19 00:32:13,763 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-07-19 00:32:13,763 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-07-19 00:32:13,763 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-07-19 00:32:13,763 [ scc.merge] INFO Already up to date.
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-07-19 00:32:13,763 [ scc.merge] INFO
2025-07-19 00:32:13,763 [ scc.merge] INFO Repository: ome/scripts
2025-07-19 00:32:13,763 [ scc.merge] INFO Excluded PRs:
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-07-19 00:32:13,763 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-07-19 00:32:13,764 [ scc.merge] INFO Updating 4b4c755..573db34
2025-07-19 00:32:13,764 [ scc.merge] INFO Previously merged:
2025-07-19 00:32:13,764 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-07-19 00:32:13,764 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-07-19 00:32:13,764 [ scc.merge] INFO
2025-07-19 00:32:13,764 [ scc.merge] INFO Merged PRs:
2025-07-19 00:32:13,764 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-07-19 00:32:13,764 [ scc.merge] INFO
2025-07-19 00:32:13,764 [ scc.merge] INFO Conflicting PRs (not included):
2025-07-19 00:32:13,764 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-07-19 00:32:13,764 [ scc.merge] INFO
2025-07-19 00:32:13,764 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-07-19 00:32:13,764 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,766 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-07-19 00:32:13,766 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,768 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,768 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-07-19 00:32:13,768 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,770 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-07-19 00:32:13,771 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,773 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,773 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-07-19 00:32:13,773 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,775 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,775 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-07-19 00:32:13,775 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,777 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,777 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-07-19 00:32:13,777 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,779 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-07-19 00:32:13,780 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-07-19 00:32:13,782 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,784 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,784 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-07-19 00:32:13,784 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,786 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,786 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-07-19 00:32:13,786 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,788 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,788 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-07-19 00:32:13,789 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-07-19 00:32:13,791 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,793 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,793 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-07-19 00:32:13,793 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,795 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,795 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-07-19 00:32:13,795 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,797 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,797 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-07-19 00:32:13,797 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,799 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,800 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-07-19 00:32:13,800 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,802 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,802 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-07-19 00:32:13,802 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-07-19 00:32:13,804 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,806 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,806 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-07-19 00:32:13,806 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-07-19 00:32:13,809 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-07-19 00:32:13,811 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,813 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-07-19 00:32:13,813 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-07-19 00:32:13,813 [ scc.git] DEBUG Calling 'git remote'
2025-07-19 00:32:13,815 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 44146f4] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD d7ea366] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-07-19 00:33:02,650 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-07-19 00:33:12,451 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-07-19 00:33:15,113 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-07-19 00:33:20,038 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-07-19 00:34:01,448 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
