Started by upstream project "Trigger" build number 8 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 5 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.3-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.3 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.18.17-py3-none-any.whl.metadata (27 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.1-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.8 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB) Collecting ruamel.yaml.clib>=0.2.15 (from ruamel.yaml->scc) Using cached ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.1-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2025.11.12-py3-none-any.whl (159 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel_yaml-0.18.17-py3-none-any.whl (121 kB) Using cached ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (777 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.11.12 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.1 requests-2.32.5 ruamel.yaml-0.18.17 ruamel.yaml.clib-0.2.15 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-12-20 00:37:56,345 [ scc.config] DEBUG Found github.token 2025-12-20 00:37:56,346 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-12-20 00:37:56,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:37:56,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:37:57,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-12-20 00:37:57,324 [ scc.gh] DEBUG 3668 remaining from 5000 (Reset at 00:12 2025-12-20 00:37:57,325 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:37:57,327 [ scc.git] DEBUG Check current status 2025-12-20 00:37:57,327 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:37:57,330 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-12-20 00:37:57,330 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:37:57,378 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2025-12-20 00:37:57,381 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-12-20 00:37:57,384 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-12-20 00:37:57,387 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-12-20 00:37:57,391 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-12-20 00:37:57,393 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-12-20 00:37:57,396 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-12-20 00:37:57,399 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-12-20 00:37:57,402 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-12-20 00:37:57,405 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-12-20 00:37:57,408 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-12-20 00:37:57,411 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-12-20 00:37:57,414 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-12-20 00:37:57,417 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-12-20 00:37:57,420 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-12-20 00:37:57,422 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-12-20 00:37:57,425 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-12-20 00:37:57,428 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-12-20 00:37:57,430 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-12-20 00:37:57,433 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-12-20 00:37:57,436 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-12-20 00:37:57,439 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-12-20 00:37:57,442 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:37:57,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-12-20 00:37:58,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:37:58,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:37:59,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:37:59,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:37:59,671 [ scc.git] DEBUG Resetting... 2025-12-20 00:37:59,671 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-12-20 00:37:59,679 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-12-20 00:37:59,679 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-12-20 00:37:59,782 [ scc.git] DEBUG Check current status 2025-12-20 00:37:59,782 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:37:59,784 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-12-20 00:37:59,784 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:37:59,829 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2025-12-20 00:37:59,832 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-12-20 00:37:59,835 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-12-20 00:37:59,837 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-12-20 00:37:59,841 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-12-20 00:37:59,843 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-12-20 00:37:59,846 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-12-20 00:37:59,849 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-12-20 00:37:59,852 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-12-20 00:37:59,855 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-12-20 00:37:59,857 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-12-20 00:37:59,860 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-12-20 00:37:59,863 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-12-20 00:37:59,866 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-12-20 00:37:59,869 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-12-20 00:37:59,871 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-12-20 00:37:59,874 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-12-20 00:37:59,876 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-12-20 00:37:59,879 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-12-20 00:37:59,882 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-12-20 00:37:59,884 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-12-20 00:37:59,887 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-12-20 00:37:59,888 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-12-20 00:37:59,888 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-12-20 00:37:59,889 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-12-20 00:37:59,889 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-12-20 00:37:59,889 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-12-20 00:37:59,889 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:38:00,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-12-20 00:38:00,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-12-20 00:38:00,701 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:38:00,702 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-12-20 00:38:01,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-12-20 00:38:01,262 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:38:01,262 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-12-20 00:38:01,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-12-20 00:38:01,740 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:38:01,740 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-12-20 00:38:01,740 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:38:01,740 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:38:01,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:38:01,743 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:38:01,745 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:38:01,745 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:38:01,748 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:38:01,750 [ scc.git] DEBUG Already up to date. 2025-12-20 00:38:01,751 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-12-20 00:38:02,019 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-12-20 00:38:02,019 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-12-20 00:38:02,023 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-12-20 00:38:02,277 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-12-20 00:38:02,277 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-12-20 00:38:02,282 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-12-20 00:38:02,532 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-12-20 00:38:02,532 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-12-20 00:38:02,536 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:38:02,536 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:38:02,536 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:38:02,538 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-12-20 00:38:02,541 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:38:02,543 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-12-20 00:38:02,557 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:38:02,560 [ scc.git] DEBUG scripts | 2 +- 2025-12-20 00:38:02,560 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:38:02,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:38:02,708 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-12-20 00:38:02,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:38:02,713 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-12-20 00:38:02,728 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:38:02,731 [ scc.git] DEBUG omero-figure | 2 +- 2025-12-20 00:38:02,731 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:38:03,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:38:03,110 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-12-20 00:38:03,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:38:03,115 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-12-20 00:38:03,129 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:38:03,132 [ scc.git] DEBUG omero-iviewer | 2 +- 2025-12-20 00:38:03,132 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:38:03,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:38:03,506 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:38:03,563 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-12-20 00:38:03,587 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-12-20 00:38:03,601 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-12-20 00:38:03,601 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:38:03,601 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:38:03,604 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:38:03,680 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd3712b57d0> has no local changes 2025-12-20 00:38:03,681 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:38:03,750 [ scc.git] DEBUG [detached HEAD 216ba70] merge master -Dorg -Snone 2025-12-20 00:38:03,751 [ scc.merge] INFO Repository: ome/omero-plugins 2025-12-20 00:38:03,751 [ scc.merge] INFO Already up to date. 2025-12-20 00:38:03,751 [ scc.merge] INFO 2025-12-20 00:38:03,751 [ scc.merge] INFO Merged PRs: 2025-12-20 00:38:03,751 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-12-20 00:38:03,751 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-12-20 00:38:03,751 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-12-20 00:38:03,751 [ scc.merge] INFO 2025-12-20 00:38:03,751 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-12-20 00:38:03,751 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out '37ea7000309b4f8b87c5122c138fb59b17ecf86b' Submodule path 'omero-figure': checked out '88b01ef56d2140b716e7f7022a5e7bd3d4b2c654' Submodule path 'omero-iviewer': checked out '5e2de43ad401fb00690a79644056e0ac15fabfd5' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '18a9a752ca35a4bbe40246e3c225c0fb224ce883' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2025-12-20 00:38:10,441 [ scc.config] DEBUG Found github.token 2025-12-20 00:38:10,442 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-12-20 00:38:10,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:38:11,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:38:11,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-12-20 00:38:11,433 [ scc.gh] DEBUG 3654 remaining from 5000 (Reset at 00:12 2025-12-20 00:38:11,434 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:11,436 [ scc.git] DEBUG Check current status 2025-12-20 00:38:11,436 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:11,439 [ scc.git] DEBUG 216ba70 merge master -Dorg -Snone 2025-12-20 00:38:11,439 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:11,486 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2025-12-20 00:38:11,489 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-12-20 00:38:11,492 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2025-12-20 00:38:11,495 [ scc.git] DEBUG +37ea7000309b4f8b87c5122c138fb59b17ecf86b omero-cli-zarr (v0.7.0rc1-2-g37ea700) 2025-12-20 00:38:11,505 [ scc.git] DEBUG +88b01ef56d2140b716e7f7022a5e7bd3d4b2c654 omero-figure (v7.2.1-347-g88b01ef5) 2025-12-20 00:38:11,507 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-12-20 00:38:11,510 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-12-20 00:38:11,513 [ scc.git] DEBUG +5e2de43ad401fb00690a79644056e0ac15fabfd5 omero-iviewer (v0.16.0-20-g5e2de43) 2025-12-20 00:38:11,516 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-12-20 00:38:11,519 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2025-12-20 00:38:11,522 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-12-20 00:38:11,525 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-12-20 00:38:11,528 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-12-20 00:38:11,531 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-12-20 00:38:11,534 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2025-12-20 00:38:11,537 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-12-20 00:38:11,539 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2025-12-20 00:38:11,542 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2025-12-20 00:38:11,545 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-12-20 00:38:11,547 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-12-20 00:38:11,550 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-12-20 00:38:11,555 [ scc.git] DEBUG +18a9a752ca35a4bbe40246e3c225c0fb224ce883 scripts (v5.9.1-17-g18a9a75) 2025-12-20 00:38:11,558 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:11,558 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-12-20 00:38:11,559 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2025-12-20 00:38:11,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-12-20 00:38:12,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:12,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:13,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:13,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:13,720 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:13,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-12-20 00:38:13,792 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:13,795 [ scc.git] DEBUG Check current status 2025-12-20 00:38:13,795 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:13,798 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2025-12-20 00:38:13,798 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:13,839 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:14,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2025-12-20 00:38:14,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:15,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:15,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:16,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:16,003 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:16,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:16,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-12-20 00:38:16,043 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:16,046 [ scc.git] DEBUG Check current status 2025-12-20 00:38:16,046 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:16,048 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2025-12-20 00:38:16,048 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:16,088 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:16,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2025-12-20 00:38:17,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:17,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:17,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:18,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:18,229 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:18,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:18,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-12-20 00:38:18,269 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:18,271 [ scc.git] DEBUG Check current status 2025-12-20 00:38:18,271 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:18,274 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2025-12-20 00:38:18,274 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:18,313 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:18,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2025-12-20 00:38:19,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:19,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:19,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:20,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:20,391 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:20,429 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:20,430 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-12-20 00:38:20,430 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:20,432 [ scc.git] DEBUG Check current status 2025-12-20 00:38:20,432 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:20,434 [ scc.git] DEBUG 37ea700 Bump version: 0.7.0rc1 → 0.7.1.dev0 2025-12-20 00:38:20,435 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:20,473 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:20,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2025-12-20 00:38:21,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:21,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:22,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:22,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:22,604 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:22,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:22,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-12-20 00:38:22,643 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:22,645 [ scc.git] DEBUG Check current status 2025-12-20 00:38:22,645 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:22,647 [ scc.git] DEBUG 88b01ef5 Merge pull request #637 from Rdornier/fix-scalebar-position 2025-12-20 00:38:22,648 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:22,686 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:23,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2025-12-20 00:38:23,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:23,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:24,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:24,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:24,814 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:24,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:24,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-12-20 00:38:24,854 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:24,856 [ scc.git] DEBUG Check current status 2025-12-20 00:38:24,856 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:24,859 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2025-12-20 00:38:24,859 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:24,897 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:25,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2025-12-20 00:38:25,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:26,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:26,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:27,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:27,028 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:27,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:27,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-12-20 00:38:27,067 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:27,070 [ scc.git] DEBUG Check current status 2025-12-20 00:38:27,070 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:27,072 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2025-12-20 00:38:27,072 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:27,112 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:27,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2025-12-20 00:38:27,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:28,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:28,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:29,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:29,242 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:29,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:29,282 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-12-20 00:38:29,282 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:29,284 [ scc.git] DEBUG Check current status 2025-12-20 00:38:29,284 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:29,286 [ scc.git] DEBUG 5e2de43 Merge pull request #510 from joshmoore/issue-509 2025-12-20 00:38:29,287 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:29,326 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:29,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2025-12-20 00:38:30,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:30,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:31,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:31,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:31,527 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:31,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:31,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-12-20 00:38:31,567 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:31,569 [ scc.git] DEBUG Check current status 2025-12-20 00:38:31,569 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:31,572 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2025-12-20 00:38:31,572 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:31,611 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:32,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2025-12-20 00:38:32,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:33,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:33,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:33,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:33,902 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:33,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:33,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-12-20 00:38:33,943 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:33,945 [ scc.git] DEBUG Check current status 2025-12-20 00:38:33,945 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:33,947 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-12-20 00:38:33,947 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:33,988 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:34,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2025-12-20 00:38:34,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:35,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:35,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:36,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:36,138 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:36,177 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:36,177 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-12-20 00:38:36,177 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:36,180 [ scc.git] DEBUG Check current status 2025-12-20 00:38:36,180 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:36,182 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2025-12-20 00:38:36,182 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:36,223 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:36,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2025-12-20 00:38:37,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:37,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:37,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:38,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:38,370 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:38,410 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:38,411 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-12-20 00:38:38,411 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:38,413 [ scc.git] DEBUG Check current status 2025-12-20 00:38:38,413 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:38,415 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2025-12-20 00:38:38,415 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:38,454 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:38,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2025-12-20 00:38:39,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:39,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:40,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:40,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:40,572 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:40,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:40,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-12-20 00:38:40,611 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:40,613 [ scc.git] DEBUG Check current status 2025-12-20 00:38:40,613 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:40,616 [ scc.git] DEBUG bdfeb5e bump sphinx version 2025-12-20 00:38:40,616 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:40,654 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:41,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2025-12-20 00:38:41,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:42,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:42,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:42,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:42,817 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:42,856 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:42,856 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-12-20 00:38:42,856 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:42,858 [ scc.git] DEBUG Check current status 2025-12-20 00:38:42,858 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:42,861 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2025-12-20 00:38:42,861 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:42,900 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:43,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2025-12-20 00:38:43,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:44,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:44,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:44,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:44,987 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:45,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:45,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-12-20 00:38:45,030 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:45,032 [ scc.git] DEBUG Check current status 2025-12-20 00:38:45,032 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:45,034 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2025-12-20 00:38:45,034 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:45,075 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:45,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-12-20 00:38:45,416 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-12-20 00:38:45,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2025-12-20 00:38:46,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:46,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:46,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:47,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:47,334 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:47,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:47,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-12-20 00:38:47,375 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:47,377 [ scc.git] DEBUG Check current status 2025-12-20 00:38:47,377 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:47,379 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2025-12-20 00:38:47,380 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:47,420 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:47,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2025-12-20 00:38:48,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:48,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:49,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:49,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:49,596 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:49,635 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:49,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-12-20 00:38:49,636 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:49,638 [ scc.git] DEBUG Check current status 2025-12-20 00:38:49,638 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:49,641 [ scc.git] DEBUG 160d894 Fix display of code 2025-12-20 00:38:49,641 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:49,680 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:50,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2025-12-20 00:38:50,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:51,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:51,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:51,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:51,839 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:51,879 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:51,880 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-12-20 00:38:51,880 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:51,882 [ scc.git] DEBUG Check current status 2025-12-20 00:38:51,882 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:51,884 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2025-12-20 00:38:51,884 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:51,924 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:51,924 [ scc.git] DEBUG Repository configuration: base-branch: main 2025-12-20 00:38:52,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2025-12-20 00:38:52,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:53,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:53,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:54,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:54,104 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:54,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:54,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-12-20 00:38:54,145 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:54,147 [ scc.git] DEBUG Check current status 2025-12-20 00:38:54,147 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:54,149 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2025-12-20 00:38:54,149 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:54,190 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:54,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-12-20 00:38:54,539 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-12-20 00:38:54,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2025-12-20 00:38:55,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:55,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:56,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:56,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:56,576 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:56,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:56,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-12-20 00:38:56,616 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:56,618 [ scc.git] DEBUG Check current status 2025-12-20 00:38:56,618 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:56,620 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2025-12-20 00:38:56,620 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:56,660 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:57,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-12-20 00:38:57,019 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-12-20 00:38:57,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2025-12-20 00:38:57,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:38:58,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:38:58,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:38:59,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:38:59,023 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:38:59,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:38:59,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-12-20 00:38:59,062 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:38:59,064 [ scc.git] DEBUG Check current status 2025-12-20 00:38:59,064 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:38:59,067 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-12-20 00:38:59,067 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:38:59,107 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:38:59,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2025-12-20 00:39:00,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:39:00,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:39:00,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:39:01,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:39:01,280 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:39:01,320 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:39:01,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-12-20 00:39:01,321 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-12-20 00:39:01,323 [ scc.git] DEBUG Check current status 2025-12-20 00:39:01,323 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:39:01,325 [ scc.git] DEBUG 18a9a75 Merge pull request #229 from Rdornier/split-view-user-label 2025-12-20 00:39:01,325 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:39:01,366 [ scc.config] DEBUG Found remote.origin.url 2025-12-20 00:39:01,366 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-12-20 00:39:01,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-12-20 00:39:01,727 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-12-20 00:39:02,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2025-12-20 00:39:02,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-12-20 00:39:02,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-12-20 00:39:03,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-12-20 00:39:03,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-12-20 00:39:03,875 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:39:03,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:39:03,914 [ scc.git] DEBUG Resetting... 2025-12-20 00:39:03,914 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-12-20 00:39:03,921 [ scc.git] DEBUG HEAD is now at 216ba70 merge master -Dorg -Snone 2025-12-20 00:39:03,921 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-12-20 00:39:03,973 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2025-12-20 00:39:03,988 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2025-12-20 00:39:04,015 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-12-20 00:39:04,034 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-12-20 00:39:04,048 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2025-12-20 00:39:04,071 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2025-12-20 00:39:04,085 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2025-12-20 00:39:04,095 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2025-12-20 00:39:04,119 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-12-20 00:39:04,122 [ scc.git] DEBUG Check current status 2025-12-20 00:39:04,122 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-12-20 00:39:04,124 [ scc.git] DEBUG 216ba70 merge master -Dorg -Snone 2025-12-20 00:39:04,125 [ scc.git] DEBUG Calling 'git submodule status' 2025-12-20 00:39:04,169 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2025-12-20 00:39:04,171 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-12-20 00:39:04,174 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-12-20 00:39:04,177 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-12-20 00:39:04,180 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2025-12-20 00:39:04,183 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-12-20 00:39:04,185 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-12-20 00:39:04,188 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2025-12-20 00:39:04,191 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-12-20 00:39:04,194 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-12-20 00:39:04,196 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-12-20 00:39:04,199 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-12-20 00:39:04,202 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-12-20 00:39:04,205 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-12-20 00:39:04,208 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-12-20 00:39:04,211 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-12-20 00:39:04,213 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-12-20 00:39:04,216 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-12-20 00:39:04,218 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-12-20 00:39:04,221 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-12-20 00:39:04,224 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-12-20 00:39:04,227 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2025-12-20 00:39:04,227 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-12-20 00:39:04,228 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-12-20 00:39:04,228 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-12-20 00:39:04,228 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-12-20 00:39:04,228 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-12-20 00:39:04,228 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-12-20 00:39:04,228 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:39:04,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-12-20 00:39:04,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-12-20 00:39:04,970 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:39:05,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-12-20 00:39:06,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:06,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-12-20 00:39:07,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:39:07,010 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-12-20 00:39:07,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-12-20 00:39:07,501 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:39:08,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-12-20 00:39:08,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:08,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-12-20 00:39:09,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:39:09,329 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-12-20 00:39:09,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-12-20 00:39:09,813 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:39:10,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-12-20 00:39:10,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:11,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-12-20 00:39:11,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:39:11,769 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-12-20 00:39:11,770 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:39:11,770 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:11,770 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:11,772 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:39:11,774 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:39:11,775 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:39:11,777 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:39:11,780 [ scc.git] DEBUG Already up to date. 2025-12-20 00:39:11,780 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-12-20 00:39:12,057 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-12-20 00:39:12,057 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-12-20 00:39:12,061 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-12-20 00:39:12,321 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-12-20 00:39:12,321 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-12-20 00:39:12,326 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-12-20 00:39:12,576 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-12-20 00:39:12,576 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-12-20 00:39:12,580 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:39:12,580 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:12,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:12,583 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-12-20 00:39:12,585 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:12,587 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-12-20 00:39:12,590 [ scc.git] DEBUG Already up to date. 2025-12-20 00:39:12,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:39:12,739 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-12-20 00:39:12,742 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:12,744 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-12-20 00:39:12,747 [ scc.git] DEBUG Already up to date. 2025-12-20 00:39:13,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:39:13,132 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-12-20 00:39:13,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:13,137 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-12-20 00:39:13,139 [ scc.git] DEBUG Already up to date. 2025-12-20 00:39:13,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:39:13,515 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:39:13,565 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:13,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:13,567 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:39:13,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2025-12-20 00:39:13,941 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:39:13,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-12-20 00:39:13,941 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:13,941 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:13,944 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:39:13,946 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:39:13,946 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:39:13,948 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:39:13,951 [ scc.git] DEBUG Already up to date. 2025-12-20 00:39:13,951 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:39:13,951 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:13,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:13,954 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:39:13,991 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:13,991 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:13,994 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:39:14,030 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:39:14,033 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72425852d0> has no local changes 2025-12-20 00:39:14,033 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:39:14,039 [ scc.git] DEBUG [detached HEAD 2ac579e] merge master -Dorg -Ssuccess-only 2025-12-20 00:39:14,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:39:14,039 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:39:14,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2025-12-20 00:39:14,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2025-12-20 00:39:14,982 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:39:15,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-12-20 00:39:15,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:16,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:17,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-12-20 00:39:17,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:39:17,590 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:39:18,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2025-12-20 00:39:18,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2025-12-20 00:39:18,547 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:39:18,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-12-20 00:39:18,547 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:18,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:18,550 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:39:18,552 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:39:18,552 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:39:18,555 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:39:18,558 [ scc.git] DEBUG Already up to date. 2025-12-20 00:39:18,558 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2025-12-20 00:39:18,823 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2025-12-20 00:39:18,823 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2025-12-20 00:39:18,828 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:39:18,828 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:18,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:18,830 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-12-20 00:39:18,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:18,835 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-12-20 00:39:18,841 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:39:18,844 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:39:18,844 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:39:18,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:39:18,990 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:39:19,028 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:19,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:19,030 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:39:19,067 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:39:19,070 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724290c990> has no local changes 2025-12-20 00:39:19,070 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:39:19,076 [ scc.git] DEBUG [detached HEAD dc37c5a] merge master -Dorg -Ssuccess-only 2025-12-20 00:39:19,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:39:19,076 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:39:19,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2025-12-20 00:39:20,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2025-12-20 00:39:20,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2025-12-20 00:39:20,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2025-12-20 00:39:21,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:21,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:22,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2025-12-20 00:39:22,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:39:22,907 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2025-12-20 00:39:23,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2025-12-20 00:39:23,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2025-12-20 00:39:23,857 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:39:23,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-12-20 00:39:23,857 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:23,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:23,860 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:39:23,862 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:39:23,862 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:39:23,865 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:39:23,872 [ scc.git] DEBUG Updating ce6e13c..68b7303 2025-12-20 00:39:24,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2025-12-20 00:39:25,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2025-12-20 00:39:25,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2025-12-20 00:39:26,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2025-12-20 00:39:26,602 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2025-12-20 00:39:26,875 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-12-20 00:39:26,875 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2025-12-20 00:39:26,879 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:39:26,879 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:26,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:26,881 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2025-12-20 00:39:26,885 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:26,887 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2025-12-20 00:39:26,895 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-12-20 00:39:26,896 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:39:26,899 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2025-12-20 00:39:26,899 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2025-12-20 00:39:27,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:39:27,033 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:39:27,070 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:27,070 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:27,073 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:39:27,109 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:39:27,112 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724268f050> has no local changes 2025-12-20 00:39:27,112 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:39:27,118 [ scc.git] DEBUG [detached HEAD 7e2454a] merge master -Dorg -Ssuccess-only 2025-12-20 00:39:27,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:39:27,118 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:39:27,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2025-12-20 00:39:28,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/186 HTTP/1.1" 200 None 2025-12-20 00:39:28,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2025-12-20 00:39:29,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:29,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:30,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2025-12-20 00:39:30,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:31,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2025-12-20 00:39:31,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/status HTTP/1.1" 200 None 2025-12-20 00:39:31,557 [ scc.repo] DEBUG - PR 186 jburel 'Create release from tag' 2025-12-20 00:39:32,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2025-12-20 00:39:32,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2025-12-20 00:39:32,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2025-12-20 00:39:33,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:33,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:34,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2025-12-20 00:39:34,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:35,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2025-12-20 00:39:35,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None 2025-12-20 00:39:35,763 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"' 2025-12-20 00:39:36,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2025-12-20 00:39:36,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2025-12-20 00:39:37,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2025-12-20 00:39:37,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:38,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:38,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2025-12-20 00:39:39,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/b1ec9c408dd417886a980e3368c0d82bfefe491d?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:39,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2025-12-20 00:39:39,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/status HTTP/1.1" 200 None 2025-12-20 00:39:39,991 [ scc.repo] DEBUG - PR 181 will-moore 'Add labels support for import' 2025-12-20 00:39:40,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2025-12-20 00:39:40,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2025-12-20 00:39:41,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-12-20 00:39:41,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:42,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:42,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-12-20 00:39:43,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:43,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-12-20 00:39:44,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2025-12-20 00:39:44,443 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-12-20 00:39:44,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2025-12-20 00:39:45,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2025-12-20 00:39:46,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2025-12-20 00:39:46,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:47,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:47,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2025-12-20 00:39:48,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:48,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2025-12-20 00:39:49,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2025-12-20 00:39:49,258 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2025-12-20 00:39:49,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2025-12-20 00:39:50,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2025-12-20 00:39:50,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f HTTP/1.1" 200 None 2025-12-20 00:39:51,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:39:51,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:39:52,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2025-12-20 00:39:52,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2025-12-20 00:39:53,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2025-12-20 00:39:53,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2025-12-20 00:39:54,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2025-12-20 00:39:54,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2025-12-20 00:39:55,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2025-12-20 00:39:55,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2025-12-20 00:39:56,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2025-12-20 00:39:56,160 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:39:56,160 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-12-20 00:39:56,160 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:39:56,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:39:56,163 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:39:56,166 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:39:56,166 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:39:56,169 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:39:56,181 [ scc.git] DEBUG Updating 11d3587..37ea700 2025-12-20 00:39:56,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2025-12-20 00:39:57,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2025-12-20 00:39:58,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2025-12-20 00:39:58,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2025-12-20 00:39:59,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2025-12-20 00:40:00,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2025-12-20 00:40:00,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2025-12-20 00:40:01,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2025-12-20 00:40:01,652 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2025-12-20 00:40:01,920 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-12-20 00:40:01,920 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2025-12-20 00:40:01,924 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2025-12-20 00:40:02,183 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-12-20 00:40:02,183 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2025-12-20 00:40:02,187 [ scc.git] DEBUG Calling 'git fetch origin pull/181/head' 2025-12-20 00:40:02,443 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-12-20 00:40:02,443 [ scc.git] DEBUG * branch refs/pull/181/head -> FETCH_HEAD 2025-12-20 00:40:02,447 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head' 2025-12-20 00:40:02,706 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-12-20 00:40:02,706 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD 2025-12-20 00:40:02,710 [ scc.git] DEBUG Calling 'git fetch origin pull/186/head' 2025-12-20 00:40:02,968 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-12-20 00:40:02,968 [ scc.git] DEBUG * branch refs/pull/186/head -> FETCH_HEAD 2025-12-20 00:40:02,972 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:40:02,972 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:02,972 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:02,974 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2025-12-20 00:40:02,977 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:02,979 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2025-12-20 00:40:02,989 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:02,993 [ scc.git] DEBUG README.rst | 14 ++ 2025-12-20 00:40:02,993 [ scc.git] DEBUG src/omero_zarr/cli.py | 66 +++++---- 2025-12-20 00:40:02,993 [ scc.git] DEBUG src/omero_zarr/kvp_tables.py | 82 +++++++++++ 2025-12-20 00:40:02,993 [ scc.git] DEBUG src/omero_zarr/masks.py | 46 ++++-- 2025-12-20 00:40:02,993 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 51 +++++-- 2025-12-20 00:40:02,993 [ scc.git] DEBUG src/omero_zarr/util.py | 49 ++++++- 2025-12-20 00:40:02,993 [ scc.git] DEBUG test/integration/clitest/test_export.py | 251 +++++++++++++++++++++++--------- 2025-12-20 00:40:02,993 [ scc.git] DEBUG 7 files changed, 443 insertions(+), 116 deletions(-) 2025-12-20 00:40:02,993 [ scc.git] DEBUG create mode 100644 src/omero_zarr/kvp_tables.py 2025-12-20 00:40:03,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:03,139 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-12-20 00:40:03,142 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:03,145 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-12-20 00:40:03,154 [ scc.git] DEBUG Auto-merging CHANGELOG.md 2025-12-20 00:40:03,154 [ scc.git] DEBUG CONFLICT (content): Merge conflict in CHANGELOG.md 2025-12-20 00:40:03,154 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2025-12-20 00:40:03,154 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2025-12-20 00:40:03,154 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2025-12-20 00:40:03,155 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2025-12-20 00:40:03,155 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:40:03,155 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:40:03,157 [ scc.git] DEBUG Calling 'git reset --hard 238af54236151fd5ca285870cd94395f5399dadd' 2025-12-20 00:40:03,162 [ scc.git] DEBUG HEAD is now at 238af54 merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) 2025-12-20 00:40:03,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:03,533 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-12-20 00:40:03,536 [ scc.git] DEBUG Calling 'git diff --name-only f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2025-12-20 00:40:03,539 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - CHANGELOG.md --conflicts 2025-12-20 00:40:03,541 [ scc.config] DEBUG Found github.token 2025-12-20 00:40:03,541 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2025-12-20 00:40:03,541 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b1ec9c408dd417886a980e3368c0d82bfefe491d' 2025-12-20 00:40:03,544 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:03,546 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) b1ec9c408dd417886a980e3368c0d82bfefe491d' 2025-12-20 00:40:03,555 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2025-12-20 00:40:03,555 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:03,559 [ scc.git] DEBUG src/omero_zarr/cli.py | 4 + 2025-12-20 00:40:03,559 [ scc.git] DEBUG src/omero_zarr/import_labels.py | 196 ++++++++++++++++++++++++++++++++ 2025-12-20 00:40:03,559 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 7 ++ 2025-12-20 00:40:03,559 [ scc.git] DEBUG test/integration/clitest/test_import.py | 19 ++++ 2025-12-20 00:40:03,559 [ scc.git] DEBUG 4 files changed, 226 insertions(+) 2025-12-20 00:40:03,559 [ scc.git] DEBUG create mode 100644 src/omero_zarr/import_labels.py 2025-12-20 00:40:03,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:03,927 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2025-12-20 00:40:03,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:03,932 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2025-12-20 00:40:03,942 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2025-12-20 00:40:03,942 [ scc.git] DEBUG Auto-merging src/omero_zarr/import_labels.py 2025-12-20 00:40:03,942 [ scc.git] DEBUG CONFLICT (add/add): Merge conflict in src/omero_zarr/import_labels.py 2025-12-20 00:40:03,942 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2025-12-20 00:40:03,942 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:40:03,942 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:40:03,945 [ scc.git] DEBUG Calling 'git reset --hard fa6e2968a2ccc0e17dfde8d23ee5296318136c7e' 2025-12-20 00:40:03,950 [ scc.git] DEBUG HEAD is now at fa6e296 merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) 2025-12-20 00:40:04,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:04,317 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2025-12-20 00:40:04,320 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2025-12-20 00:40:04,322 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #181 will-moore 'Add labels support for import' - src/omero_zarr/import_labels.py --conflicts 2025-12-20 00:40:04,324 [ scc.config] DEBUG Found github.token 2025-12-20 00:40:04,324 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts. 2025-12-20 00:40:04,324 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2' 2025-12-20 00:40:04,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:04,330 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 186 (Create release from tag) e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2' 2025-12-20 00:40:04,337 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:04,340 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 7 ++++++- 2025-12-20 00:40:04,340 [ scc.git] DEBUG CHANGELOG.md | 41 -------------------------------------- 2025-12-20 00:40:04,340 [ scc.git] DEBUG 2 files changed, 6 insertions(+), 42 deletions(-) 2025-12-20 00:40:04,340 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2025-12-20 00:40:04,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:04,729 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:40:04,768 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:04,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:04,770 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:40:04,809 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:40:04,813 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7242588a10> has no local changes 2025-12-20 00:40:04,813 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 181 will-moore 'Add labels support for import' - PR 186 jburel 'Create release from tag' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:40:04,819 [ scc.git] DEBUG [detached HEAD d6443f1] merge master -Dorg -Ssuccess-only 2025-12-20 00:40:04,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:40:04,819 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:40:05,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2025-12-20 00:40:05,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/657 HTTP/1.1" 200 None 2025-12-20 00:40:06,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/657/comments HTTP/1.1" 200 None 2025-12-20 00:40:06,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb HTTP/1.1" 200 None 2025-12-20 00:40:07,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:07,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:08,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb HTTP/1.1" 200 None 2025-12-20 00:40:08,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/edf6948abddd14cbbc1e13e1fb917c09d7c647fb?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:08,779 [ scc.repo] DEBUG - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2025-12-20 00:40:09,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656 HTTP/1.1" 200 None 2025-12-20 00:40:09,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2025-12-20 00:40:10,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:10,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:11,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2025-12-20 00:40:11,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c7d0108c6df89255b8875924ed52e264a72e581d?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:11,673 [ scc.repo] DEBUG - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2025-12-20 00:40:12,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654 HTTP/1.1" 200 None 2025-12-20 00:40:12,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654/comments HTTP/1.1" 200 None 2025-12-20 00:40:13,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063 HTTP/1.1" 200 None 2025-12-20 00:40:13,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:14,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:14,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063 HTTP/1.1" 200 None 2025-12-20 00:40:15,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e1b877b4b9b8cbb506d839dcb304a0b10df25063?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:15,002 [ scc.repo] DEBUG - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2025-12-20 00:40:15,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None 2025-12-20 00:40:15,479 [ scc.repo] DEBUG # ... Include label: include 2025-12-20 00:40:16,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2025-12-20 00:40:16,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:17,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:17,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2025-12-20 00:40:17,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:17,919 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2025-12-20 00:40:18,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/649 HTTP/1.1" 200 None 2025-12-20 00:40:18,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/649/comments HTTP/1.1" 200 None 2025-12-20 00:40:19,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83 HTTP/1.1" 200 None 2025-12-20 00:40:19,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:20,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:20,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83 HTTP/1.1" 200 None 2025-12-20 00:40:21,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c481ecdb1b184268c7b8a9b1749838da27127e83?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:21,258 [ scc.repo] DEBUG - PR 649 jburel 'Replace manual changelog by automated GH release step' 2025-12-20 00:40:21,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648 HTTP/1.1" 200 None 2025-12-20 00:40:22,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648/comments HTTP/1.1" 200 None 2025-12-20 00:40:22,406 [ scc.repo] DEBUG # ... Include label: include 2025-12-20 00:40:22,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827 HTTP/1.1" 200 None 2025-12-20 00:40:23,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:23,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:24,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2025-12-20 00:40:24,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2025-12-20 00:40:25,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/619 HTTP/1.1" 200 None 2025-12-20 00:40:25,293 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:40:25,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-12-20 00:40:25,294 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:25,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:25,297 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:40:25,299 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:40:25,299 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:40:25,302 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:40:25,336 [ scc.git] DEBUG Updating 9cc36cde..88b01ef5 2025-12-20 00:40:26,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2025-12-20 00:40:26,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2025-12-20 00:40:27,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2025-12-20 00:40:28,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2025-12-20 00:40:29,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2025-12-20 00:40:29,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2025-12-20 00:40:30,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2025-12-20 00:40:30,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2025-12-20 00:40:31,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2025-12-20 00:40:32,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2025-12-20 00:40:33,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2025-12-20 00:40:33,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2025-12-20 00:40:34,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2025-12-20 00:40:35,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2025-12-20 00:40:35,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2025-12-20 00:40:36,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2025-12-20 00:40:37,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2025-12-20 00:40:37,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2025-12-20 00:40:37,811 [ scc.git] DEBUG Calling 'git fetch origin pull/649/head' 2025-12-20 00:40:38,089 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-12-20 00:40:38,089 [ scc.git] DEBUG * branch refs/pull/649/head -> FETCH_HEAD 2025-12-20 00:40:38,093 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head' 2025-12-20 00:40:38,349 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-12-20 00:40:38,349 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD 2025-12-20 00:40:38,353 [ scc.git] DEBUG Calling 'git fetch origin pull/654/head' 2025-12-20 00:40:38,611 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-12-20 00:40:38,611 [ scc.git] DEBUG * branch refs/pull/654/head -> FETCH_HEAD 2025-12-20 00:40:38,615 [ scc.git] DEBUG Calling 'git fetch origin pull/656/head' 2025-12-20 00:40:38,869 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-12-20 00:40:38,869 [ scc.git] DEBUG * branch refs/pull/656/head -> FETCH_HEAD 2025-12-20 00:40:38,872 [ scc.git] DEBUG Calling 'git fetch origin pull/657/head' 2025-12-20 00:40:39,134 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-12-20 00:40:39,134 [ scc.git] DEBUG * branch refs/pull/657/head -> FETCH_HEAD 2025-12-20 00:40:39,138 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:40:39,138 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:39,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:39,141 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c481ecdb1b184268c7b8a9b1749838da27127e83' 2025-12-20 00:40:39,147 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:39,149 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 649 (Replace manual changelog by automated GH release step) c481ecdb1b184268c7b8a9b1749838da27127e83' 2025-12-20 00:40:39,163 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2025-12-20 00:40:39,164 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:39,167 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2025-12-20 00:40:39,168 [ scc.git] DEBUG CHANGELOG.md | 388 ------------------------------------- 2025-12-20 00:40:39,168 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 388 deletions(-) 2025-12-20 00:40:39,168 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2025-12-20 00:40:39,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:39,314 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2025-12-20 00:40:39,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:39,323 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2025-12-20 00:40:39,342 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-12-20 00:40:39,343 [ scc.git] DEBUG Auto-merging src/index.html 2025-12-20 00:40:39,343 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2025-12-20 00:40:39,343 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:39,348 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++- 2025-12-20 00:40:39,348 [ scc.git] DEBUG src/index.html | 11 ++ 2025-12-20 00:40:39,348 [ scc.git] DEBUG src/js/views/figure_view.js | 1 + 2025-12-20 00:40:39,348 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-) 2025-12-20 00:40:39,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:39,705 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e1b877b4b9b8cbb506d839dcb304a0b10df25063' 2025-12-20 00:40:39,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:39,714 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 654 (Refresh metadata button to reload channel names, pixel sizes) e1b877b4b9b8cbb506d839dcb304a0b10df25063' 2025-12-20 00:40:39,733 [ scc.git] DEBUG Auto-merging src/index.html 2025-12-20 00:40:39,733 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2025-12-20 00:40:39,733 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2025-12-20 00:40:39,734 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:39,738 [ scc.git] DEBUG src/index.html | 5 +++ 2025-12-20 00:40:39,738 [ scc.git] DEBUG src/js/models/figure_model.js | 71 +++++++++++++++++++++++++++++++++++++++++++ 2025-12-20 00:40:39,738 [ scc.git] DEBUG src/js/views/figure_view.js | 7 +++++ 2025-12-20 00:40:39,738 [ scc.git] DEBUG 3 files changed, 83 insertions(+) 2025-12-20 00:40:40,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:40,097 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c7d0108c6df89255b8875924ed52e264a72e581d' 2025-12-20 00:40:40,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:40,104 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 656 (Option to add roi comment when adding ROI from OMERO) c7d0108c6df89255b8875924ed52e264a72e581d' 2025-12-20 00:40:40,116 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2025-12-20 00:40:40,117 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:40,120 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 3 +- 2025-12-20 00:40:40,120 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 68 +++++++++++++++++------- 2025-12-20 00:40:40,120 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 7 ++- 2025-12-20 00:40:40,120 [ scc.git] DEBUG 3 files changed, 56 insertions(+), 22 deletions(-) 2025-12-20 00:40:40,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:40,504 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...edf6948abddd14cbbc1e13e1fb917c09d7c647fb' 2025-12-20 00:40:40,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:40,510 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 657 (Avoid division by zero and don't save x/y NaN in grid layout) edf6948abddd14cbbc1e13e1fb917c09d7c647fb' 2025-12-20 00:40:40,521 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2025-12-20 00:40:40,522 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:40,525 [ scc.git] DEBUG src/js/models/figure_model.js | 18 ++++++++++++------ 2025-12-20 00:40:40,525 [ scc.git] DEBUG 1 file changed, 12 insertions(+), 6 deletions(-) 2025-12-20 00:40:40,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:40,885 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:40:40,925 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:40,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:40,927 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:40:40,965 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:40:40,970 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7242633410> has no local changes 2025-12-20 00:40:40,970 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) Updating 9cc36cde..88b01ef5 Previously merged: - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:40:40,977 [ scc.git] DEBUG [detached HEAD 87980e1f] merge master -Dorg -Ssuccess-only 2025-12-20 00:40:40,978 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:40:40,978 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:40:41,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2025-12-20 00:40:41,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2025-12-20 00:40:41,952 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:40:42,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-12-20 00:40:43,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:43,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:44,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-12-20 00:40:44,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:44,603 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:40:45,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2025-12-20 00:40:45,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2025-12-20 00:40:46,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-12-20 00:40:46,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:47,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-12-20 00:40:47,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:47,475 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2025-12-20 00:40:47,475 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:40:47,475 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-12-20 00:40:47,476 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:47,476 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:47,478 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:40:47,480 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:40:47,480 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:40:47,483 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:40:47,486 [ scc.git] DEBUG Already up to date. 2025-12-20 00:40:47,486 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2025-12-20 00:40:47,757 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-12-20 00:40:47,757 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2025-12-20 00:40:47,761 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2025-12-20 00:40:48,016 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-12-20 00:40:48,016 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2025-12-20 00:40:48,020 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:40:48,020 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:48,020 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:48,022 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-12-20 00:40:48,025 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:48,027 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-12-20 00:40:48,034 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2025-12-20 00:40:48,034 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:48,037 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2025-12-20 00:40:48,037 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2025-12-20 00:40:48,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:48,188 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-12-20 00:40:48,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:48,193 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-12-20 00:40:48,200 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:40:48,203 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:40:48,203 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:40:48,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:40:48,591 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:40:48,630 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:40:48,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:40:48,632 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:40:48,671 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:40:48,674 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7242644cd0> has no local changes 2025-12-20 00:40:48,674 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:40:48,680 [ scc.git] DEBUG [detached HEAD 4407bff] merge master -Dorg -Ssuccess-only 2025-12-20 00:40:48,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:40:48,681 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:40:49,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2025-12-20 00:40:49,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2025-12-20 00:40:50,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2025-12-20 00:40:50,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2025-12-20 00:40:50,611 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:40:51,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-12-20 00:40:51,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:52,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:52,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-12-20 00:40:53,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:53,071 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-12-20 00:40:53,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2025-12-20 00:40:54,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2025-12-20 00:40:54,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2025-12-20 00:40:54,528 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:40:55,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-12-20 00:40:55,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:56,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:56,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-12-20 00:40:57,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:40:57,086 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-12-20 00:40:57,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2025-12-20 00:40:57,766 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:40:58,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-12-20 00:40:58,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:40:59,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:40:59,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-12-20 00:41:00,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:00,298 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-12-20 00:41:00,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2025-12-20 00:41:00,788 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:01,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-12-20 00:41:01,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:02,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:02,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-12-20 00:41:03,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:03,245 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-12-20 00:41:03,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2025-12-20 00:41:04,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2025-12-20 00:41:04,144 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:04,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-12-20 00:41:05,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:05,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:06,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-12-20 00:41:06,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:06,699 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-12-20 00:41:07,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2025-12-20 00:41:07,185 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:07,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-12-20 00:41:08,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:08,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:09,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-12-20 00:41:09,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:09,842 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-12-20 00:41:10,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2025-12-20 00:41:10,320 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:10,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-12-20 00:41:11,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:11,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:12,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-12-20 00:41:12,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:12,897 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-12-20 00:41:12,897 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:41:12,897 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-12-20 00:41:12,897 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:12,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:12,900 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:41:12,903 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:41:12,903 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:41:12,905 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:41:12,908 [ scc.git] DEBUG Already up to date. 2025-12-20 00:41:12,908 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2025-12-20 00:41:13,206 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:13,206 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2025-12-20 00:41:13,210 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2025-12-20 00:41:13,459 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:13,459 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2025-12-20 00:41:13,462 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2025-12-20 00:41:13,723 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:13,723 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2025-12-20 00:41:13,727 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2025-12-20 00:41:13,978 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:13,978 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2025-12-20 00:41:13,981 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2025-12-20 00:41:14,230 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:14,230 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2025-12-20 00:41:14,234 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2025-12-20 00:41:14,490 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:14,490 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2025-12-20 00:41:14,494 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2025-12-20 00:41:14,749 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-12-20 00:41:14,749 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2025-12-20 00:41:14,753 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:41:14,753 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:14,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:14,756 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-12-20 00:41:14,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:14,761 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-12-20 00:41:14,769 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:14,773 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2025-12-20 00:41:14,773 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2025-12-20 00:41:14,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:14,911 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-12-20 00:41:14,914 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:14,916 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-12-20 00:41:14,930 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:14,931 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:14,935 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2025-12-20 00:41:14,935 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2025-12-20 00:41:15,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:15,304 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-12-20 00:41:15,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:15,309 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-12-20 00:41:15,323 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:15,324 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-12-20 00:41:15,324 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:41:15,324 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:41:15,327 [ scc.git] DEBUG Calling 'git reset --hard 6b0a6aed9bd6b82b50ed44757a56a83210985070' 2025-12-20 00:41:15,331 [ scc.git] DEBUG HEAD is now at 6b0a6ae merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2025-12-20 00:41:15,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:15,700 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-12-20 00:41:15,703 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-12-20 00:41:15,706 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2025-12-20 00:41:15,708 [ scc.config] DEBUG Found github.token 2025-12-20 00:41:15,708 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2025-12-20 00:41:15,708 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-12-20 00:41:15,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:15,713 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-12-20 00:41:15,728 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:15,728 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:15,733 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2025-12-20 00:41:15,733 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2025-12-20 00:41:16,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:16,095 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-12-20 00:41:16,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:16,100 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-12-20 00:41:16,114 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:16,115 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:16,119 [ scc.git] DEBUG package-lock.json | 6 +++--- 2025-12-20 00:41:16,119 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2025-12-20 00:41:16,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:16,493 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-12-20 00:41:16,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:16,498 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-12-20 00:41:16,513 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:16,513 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-12-20 00:41:16,513 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:41:16,514 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:41:16,516 [ scc.git] DEBUG Calling 'git reset --hard f6a2a9ac2247873eaeca8a6951b6767ebedbc7eb' 2025-12-20 00:41:16,521 [ scc.git] DEBUG HEAD is now at f6a2a9a merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-12-20 00:41:16,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:16,895 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-12-20 00:41:16,898 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-12-20 00:41:16,900 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2025-12-20 00:41:16,902 [ scc.config] DEBUG Found github.token 2025-12-20 00:41:16,902 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2025-12-20 00:41:16,903 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-12-20 00:41:16,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:16,907 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-12-20 00:41:16,925 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:16,925 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-12-20 00:41:16,925 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:41:16,926 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:41:16,928 [ scc.git] DEBUG Calling 'git reset --hard f6a2a9ac2247873eaeca8a6951b6767ebedbc7eb' 2025-12-20 00:41:16,933 [ scc.git] DEBUG HEAD is now at f6a2a9a merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-12-20 00:41:17,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:17,282 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-12-20 00:41:17,285 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-12-20 00:41:17,287 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2025-12-20 00:41:17,289 [ scc.config] DEBUG Found github.token 2025-12-20 00:41:17,290 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2025-12-20 00:41:17,290 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:41:17,328 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:17,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:17,330 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:41:17,369 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:41:17,374 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724263ccd0> has no local changes 2025-12-20 00:41:17,374 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:41:17,380 [ scc.git] DEBUG [detached HEAD 8e022ef] merge master -Dorg -Ssuccess-only 2025-12-20 00:41:17,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:41:17,380 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:41:17,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2025-12-20 00:41:18,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/513 HTTP/1.1" 200 None 2025-12-20 00:41:18,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2025-12-20 00:41:19,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:19,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:20,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2025-12-20 00:41:20,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/aebb6273b9267a47a47363208fa97dc9c638a688?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:20,800 [ scc.repo] DEBUG - PR 513 jburel 'Bump Python version' 2025-12-20 00:41:21,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/512 HTTP/1.1" 200 None 2025-12-20 00:41:21,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2025-12-20 00:41:22,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:22,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:23,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2025-12-20 00:41:23,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/ec8f9e716c574a715529da53dff61ef178020c43?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:23,623 [ scc.repo] DEBUG - PR 512 jburel 'Replace manual changelog by automated GH release step' 2025-12-20 00:41:24,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/511 HTTP/1.1" 200 None 2025-12-20 00:41:24,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2025-12-20 00:41:25,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2025-12-20 00:41:25,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2025-12-20 00:41:25,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2025-12-20 00:41:26,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2025-12-20 00:41:26,455 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:27,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-12-20 00:41:27,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:28,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:28,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-12-20 00:41:28,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:28,997 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-12-20 00:41:29,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2025-12-20 00:41:29,491 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:29,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-12-20 00:41:30,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:31,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:31,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-12-20 00:41:32,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:32,045 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-12-20 00:41:32,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2025-12-20 00:41:33,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2025-12-20 00:41:33,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2025-12-20 00:41:34,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2025-12-20 00:41:34,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-12-20 00:41:34,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:35,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-12-20 00:41:35,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:35,816 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2025-12-20 00:41:36,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2025-12-20 00:41:36,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2025-12-20 00:41:37,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-12-20 00:41:37,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:38,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-12-20 00:41:38,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:38,559 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2025-12-20 00:41:39,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2025-12-20 00:41:39,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2025-12-20 00:41:39,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-12-20 00:41:40,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:40,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-12-20 00:41:41,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:41,316 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2025-12-20 00:41:41,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2025-12-20 00:41:42,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2025-12-20 00:41:42,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2025-12-20 00:41:43,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:43,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:43,724 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:41:43,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-12-20 00:41:43,725 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:43,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:43,727 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:41:43,730 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:41:43,730 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:41:43,732 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:41:43,740 [ scc.git] DEBUG Updating 7a798ce..5e2de43 2025-12-20 00:41:44,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2025-12-20 00:41:45,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2025-12-20 00:41:45,030 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2025-12-20 00:41:45,296 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:45,296 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2025-12-20 00:41:45,300 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2025-12-20 00:41:45,555 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:45,555 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2025-12-20 00:41:45,559 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2025-12-20 00:41:45,817 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:45,817 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2025-12-20 00:41:45,820 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2025-12-20 00:41:46,067 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:46,068 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2025-12-20 00:41:46,071 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2025-12-20 00:41:46,322 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:46,322 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2025-12-20 00:41:46,326 [ scc.git] DEBUG Calling 'git fetch origin pull/512/head' 2025-12-20 00:41:46,585 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:46,585 [ scc.git] DEBUG * branch refs/pull/512/head -> FETCH_HEAD 2025-12-20 00:41:46,589 [ scc.git] DEBUG Calling 'git fetch origin pull/513/head' 2025-12-20 00:41:46,839 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-12-20 00:41:46,839 [ scc.git] DEBUG * branch refs/pull/513/head -> FETCH_HEAD 2025-12-20 00:41:46,843 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:41:46,843 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:46,843 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:46,845 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-12-20 00:41:46,849 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:46,851 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-12-20 00:41:46,861 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2025-12-20 00:41:46,861 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2025-12-20 00:41:46,862 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:46,865 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2025-12-20 00:41:46,865 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2025-12-20 00:41:46,865 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2025-12-20 00:41:47,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:47,021 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2025-12-20 00:41:47,025 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:47,027 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2025-12-20 00:41:47,043 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2025-12-20 00:41:47,043 [ scc.git] DEBUG Auto-merging src/app/context.js 2025-12-20 00:41:47,043 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2025-12-20 00:41:47,043 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2025-12-20 00:41:47,044 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:47,048 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2025-12-20 00:41:47,048 [ scc.git] DEBUG src/app/context.js | 6 +- 2025-12-20 00:41:47,048 [ scc.git] DEBUG src/app/header.html | 5 + 2025-12-20 00:41:47,048 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2025-12-20 00:41:47,048 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2025-12-20 00:41:47,048 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2025-12-20 00:41:47,048 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2025-12-20 00:41:47,048 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2025-12-20 00:41:47,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:47,453 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2025-12-20 00:41:47,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:47,459 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2025-12-20 00:41:47,469 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2025-12-20 00:41:47,469 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:47,472 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2025-12-20 00:41:47,472 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2025-12-20 00:41:47,472 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2025-12-20 00:41:47,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:47,840 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-12-20 00:41:47,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:47,846 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-12-20 00:41:47,864 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:47,873 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2025-12-20 00:41:47,873 [ scc.git] DEBUG package.json | 2 +- 2025-12-20 00:41:47,873 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2025-12-20 00:41:48,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:48,225 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-12-20 00:41:48,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:48,231 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-12-20 00:41:48,266 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:41:48,266 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-12-20 00:41:48,266 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:41:48,267 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:41:48,270 [ scc.git] DEBUG Calling 'git reset --hard d0adee481c9e56615ce31c8aa420b0b93dcf0c9f' 2025-12-20 00:41:48,281 [ scc.git] DEBUG HEAD is now at d0adee4 merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2025-12-20 00:41:48,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:48,612 [ scc.git] DEBUG Calling 'git merge-base 5e2de43ad401fb00690a79644056e0ac15fabfd5 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-12-20 00:41:48,615 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..5e2de43ad401fb00690a79644056e0ac15fabfd5' 2025-12-20 00:41:48,618 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2025-12-20 00:41:48,619 [ scc.config] DEBUG Found github.token 2025-12-20 00:41:48,620 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2025-12-20 00:41:48,620 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ec8f9e716c574a715529da53dff61ef178020c43' 2025-12-20 00:41:48,624 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:48,626 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 512 (Replace manual changelog by automated GH release step) ec8f9e716c574a715529da53dff61ef178020c43' 2025-12-20 00:41:48,640 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:48,644 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2025-12-20 00:41:48,644 [ scc.git] DEBUG CHANGELOG.md | 261 ------------------------------------- 2025-12-20 00:41:48,644 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 261 deletions(-) 2025-12-20 00:41:48,644 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2025-12-20 00:41:49,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:49,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688' 2025-12-20 00:41:49,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:49,017 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688' 2025-12-20 00:41:49,028 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2025-12-20 00:41:49,029 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:49,032 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++-- 2025-12-20 00:41:49,032 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2025-12-20 00:41:49,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:49,403 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:41:49,441 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:49,441 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:49,443 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:41:49,480 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:41:49,484 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7242638090> has no local changes 2025-12-20 00:41:49,484 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:41:49,491 [ scc.git] DEBUG [detached HEAD f9236cc] merge master -Dorg -Ssuccess-only 2025-12-20 00:41:49,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:41:49,491 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:41:49,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2025-12-20 00:41:50,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2025-12-20 00:41:50,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2025-12-20 00:41:50,923 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:41:51,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-12-20 00:41:51,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:52,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:41:53,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-12-20 00:41:53,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:53,418 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:41:53,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2025-12-20 00:41:54,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-12-20 00:41:54,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:55,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-12-20 00:41:55,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:55,767 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:41:56,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2025-12-20 00:41:56,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2025-12-20 00:41:57,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-12-20 00:41:57,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:41:58,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-12-20 00:41:58,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:41:58,731 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2025-12-20 00:41:58,731 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:41:58,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-12-20 00:41:58,731 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:58,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:58,734 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:41:58,736 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:41:58,736 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:41:58,739 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:41:58,742 [ scc.git] DEBUG Already up to date. 2025-12-20 00:41:58,742 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2025-12-20 00:41:59,010 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-12-20 00:41:59,011 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2025-12-20 00:41:59,014 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2025-12-20 00:41:59,266 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-12-20 00:41:59,267 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2025-12-20 00:41:59,270 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2025-12-20 00:41:59,522 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-12-20 00:41:59,522 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2025-12-20 00:41:59,525 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:41:59,525 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:41:59,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:59,527 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-12-20 00:41:59,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:59,533 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-12-20 00:41:59,540 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:59,543 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2025-12-20 00:41:59,543 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2025-12-20 00:41:59,543 [ scc.git] DEBUG requirements.txt | 2 +- 2025-12-20 00:41:59,544 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2025-12-20 00:41:59,544 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2025-12-20 00:41:59,544 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2025-12-20 00:41:59,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:41:59,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-12-20 00:41:59,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:41:59,696 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-12-20 00:41:59,704 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:41:59,706 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:41:59,706 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:00,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:00,101 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-12-20 00:42:00,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:00,107 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-12-20 00:42:00,113 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2025-12-20 00:42:00,114 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2025-12-20 00:42:00,114 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:42:00,114 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:42:00,116 [ scc.git] DEBUG Calling 'git reset --hard 51882375681e517fc75757f36dd1a92ac63d4bdc' 2025-12-20 00:42:00,120 [ scc.git] DEBUG HEAD is now at 5188237 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2025-12-20 00:42:00,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:00,489 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-12-20 00:42:00,491 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2025-12-20 00:42:00,494 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2025-12-20 00:42:00,496 [ scc.config] DEBUG Found github.token 2025-12-20 00:42:00,496 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2025-12-20 00:42:00,496 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:00,533 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:00,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:00,536 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:00,573 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:00,576 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724048be10> has no local changes 2025-12-20 00:42:00,576 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:00,582 [ scc.git] DEBUG [detached HEAD 546d6f7] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:00,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:00,582 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:01,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2025-12-20 00:42:01,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2025-12-20 00:42:01,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2025-12-20 00:42:02,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-12-20 00:42:02,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:03,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-12-20 00:42:03,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:03,882 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-12-20 00:42:04,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2025-12-20 00:42:04,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2025-12-20 00:42:05,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-12-20 00:42:05,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:06,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-12-20 00:42:06,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:06,918 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-12-20 00:42:06,918 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:06,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-12-20 00:42:06,918 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:06,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:06,920 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:06,923 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:06,923 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:06,926 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:06,932 [ scc.git] DEBUG Updating 3cd120c..55060a2 2025-12-20 00:42:07,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2025-12-20 00:42:07,609 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2025-12-20 00:42:07,883 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-12-20 00:42:07,883 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2025-12-20 00:42:07,887 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2025-12-20 00:42:08,148 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-12-20 00:42:08,148 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2025-12-20 00:42:08,153 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:08,153 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:08,153 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:08,155 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-12-20 00:42:08,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:08,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-12-20 00:42:08,173 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2025-12-20 00:42:08,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2025-12-20 00:42:08,173 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-12-20 00:42:08,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-12-20 00:42:08,173 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:42:08,173 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:42:08,176 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-12-20 00:42:08,180 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-12-20 00:42:08,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:08,339 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-12-20 00:42:08,342 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2025-12-20 00:42:08,345 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2025-12-20 00:42:08,347 [ scc.config] DEBUG Found github.token 2025-12-20 00:42:08,347 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2025-12-20 00:42:08,347 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2025-12-20 00:42:08,351 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:08,353 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2025-12-20 00:42:08,367 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-12-20 00:42:08,367 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-12-20 00:42:08,367 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2025-12-20 00:42:08,367 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:42:08,367 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:42:08,370 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-12-20 00:42:08,374 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-12-20 00:42:08,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:08,731 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2025-12-20 00:42:08,735 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2025-12-20 00:42:08,737 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2025-12-20 00:42:08,739 [ scc.config] DEBUG Found github.token 2025-12-20 00:42:08,739 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2025-12-20 00:42:08,739 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:08,777 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:08,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:08,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:08,817 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:08,821 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7242647950> has no local changes 2025-12-20 00:42:08,821 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:08,827 [ scc.git] DEBUG [detached HEAD 7f88f69] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:08,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:08,828 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:09,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2025-12-20 00:42:09,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2025-12-20 00:42:10,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-12-20 00:42:10,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:11,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:11,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-12-20 00:42:12,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:12,348 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:42:12,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2025-12-20 00:42:12,817 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:13,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-12-20 00:42:13,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:14,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:14,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-12-20 00:42:15,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:15,324 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-12-20 00:42:15,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2025-12-20 00:42:15,808 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:16,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-12-20 00:42:16,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:17,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:17,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-12-20 00:42:18,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:18,321 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-12-20 00:42:18,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2025-12-20 00:42:19,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2025-12-20 00:42:19,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2025-12-20 00:42:20,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2025-12-20 00:42:20,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2025-12-20 00:42:21,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2025-12-20 00:42:21,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2025-12-20 00:42:21,554 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:21,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-12-20 00:42:21,555 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:21,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:21,557 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:21,560 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:21,560 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:21,562 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:21,565 [ scc.git] DEBUG Already up to date. 2025-12-20 00:42:21,565 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2025-12-20 00:42:21,841 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-12-20 00:42:21,841 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2025-12-20 00:42:21,845 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2025-12-20 00:42:22,096 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-12-20 00:42:22,096 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2025-12-20 00:42:22,100 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2025-12-20 00:42:22,353 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-12-20 00:42:22,353 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2025-12-20 00:42:22,357 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:22,357 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:22,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:22,359 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2025-12-20 00:42:22,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:22,364 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2025-12-20 00:42:22,371 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:22,374 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2025-12-20 00:42:22,374 [ scc.git] DEBUG package.json | 2 +- 2025-12-20 00:42:22,374 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2025-12-20 00:42:22,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:22,542 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2025-12-20 00:42:22,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:22,547 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2025-12-20 00:42:22,556 [ scc.git] DEBUG Auto-merging package-lock.json 2025-12-20 00:42:22,556 [ scc.git] DEBUG Auto-merging package.json 2025-12-20 00:42:22,557 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:22,560 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2025-12-20 00:42:22,560 [ scc.git] DEBUG package.json | 2 +- 2025-12-20 00:42:22,560 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2025-12-20 00:42:22,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:22,943 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-12-20 00:42:22,946 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:22,948 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-12-20 00:42:22,955 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:22,958 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:42:22,958 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:23,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:23,339 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:23,377 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:23,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:23,379 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:23,416 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:23,419 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7240467f50> has no local changes 2025-12-20 00:42:23,420 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:23,425 [ scc.git] DEBUG [detached HEAD 15033f1] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:23,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:23,426 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:23,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2025-12-20 00:42:24,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2025-12-20 00:42:24,460 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:25,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-12-20 00:42:25,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:26,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:26,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-12-20 00:42:26,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:26,976 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:42:26,976 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:26,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-12-20 00:42:26,976 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:26,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:26,979 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:26,981 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:26,981 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:26,984 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:26,986 [ scc.git] DEBUG Already up to date. 2025-12-20 00:42:26,987 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-12-20 00:42:27,248 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2025-12-20 00:42:27,248 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-12-20 00:42:27,252 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:27,252 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:27,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:27,254 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2025-12-20 00:42:27,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:27,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2025-12-20 00:42:27,265 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:27,268 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:42:27,268 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:27,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:27,400 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:27,438 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:27,438 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:27,440 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:27,479 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:27,482 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72404a4d90> has no local changes 2025-12-20 00:42:27,482 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:27,487 [ scc.git] DEBUG [detached HEAD 2e5fbc3] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:27,488 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:27,488 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:27,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2025-12-20 00:42:28,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2025-12-20 00:42:28,432 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:28,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-12-20 00:42:29,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:30,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:30,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-12-20 00:42:30,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:31,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-12-20 00:42:31,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2025-12-20 00:42:31,896 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:42:32,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2025-12-20 00:42:32,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2025-12-20 00:42:33,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-12-20 00:42:33,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:34,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:34,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-12-20 00:42:35,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:35,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-12-20 00:42:36,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2025-12-20 00:42:36,231 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2025-12-20 00:42:36,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2025-12-20 00:42:36,715 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:36,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-12-20 00:42:36,715 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:36,715 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:36,718 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:36,720 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:36,720 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:36,723 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:36,726 [ scc.git] DEBUG Already up to date. 2025-12-20 00:42:36,726 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2025-12-20 00:42:36,993 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-12-20 00:42:36,993 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2025-12-20 00:42:36,997 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2025-12-20 00:42:37,249 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-12-20 00:42:37,249 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2025-12-20 00:42:37,252 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:37,253 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:37,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:37,255 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2025-12-20 00:42:37,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:37,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2025-12-20 00:42:37,266 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:37,269 [ scc.git] DEBUG setup.py | 4 +- 2025-12-20 00:42:37,269 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2025-12-20 00:42:37,269 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2025-12-20 00:42:37,269 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2025-12-20 00:42:37,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:37,426 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2025-12-20 00:42:37,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:37,431 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2025-12-20 00:42:37,438 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:37,440 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:42:37,440 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:37,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:37,818 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:37,858 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:37,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:37,860 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:37,898 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:37,901 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724257ba50> has no local changes 2025-12-20 00:42:37,902 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:37,907 [ scc.git] DEBUG [detached HEAD a51f3c6] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:37,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:37,908 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:38,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2025-12-20 00:42:39,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2025-12-20 00:42:39,015 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:39,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-12-20 00:42:39,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:40,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:40,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-12-20 00:42:41,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:41,373 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:42:41,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2025-12-20 00:42:42,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2025-12-20 00:42:42,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-12-20 00:42:43,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:43,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-12-20 00:42:44,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:44,168 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2025-12-20 00:42:44,168 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:44,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-12-20 00:42:44,168 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:44,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:44,170 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:44,173 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:44,173 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:44,175 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:44,178 [ scc.git] DEBUG Already up to date. 2025-12-20 00:42:44,178 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-12-20 00:42:44,449 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-12-20 00:42:44,449 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-12-20 00:42:44,452 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-12-20 00:42:44,705 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-12-20 00:42:44,706 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-12-20 00:42:44,709 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:44,709 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:44,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:44,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-12-20 00:42:44,714 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:44,717 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging setup.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2025-12-20 00:42:44,724 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:42:44,725 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:42:44,727 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2025-12-20 00:42:44,731 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2025-12-20 00:42:44,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:44,877 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-12-20 00:42:44,880 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2025-12-20 00:42:44,883 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - omero_signup/urls.py - omero_signup/views.py - setup.py --conflicts 2025-12-20 00:42:44,885 [ scc.config] DEBUG Found github.token 2025-12-20 00:42:44,885 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2025-12-20 00:42:44,885 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-12-20 00:42:44,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:44,889 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-12-20 00:42:44,896 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:44,898 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:42:44,898 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:45,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:45,270 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:45,309 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:45,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:45,311 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:45,348 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:45,351 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724049e7d0> has no local changes 2025-12-20 00:42:45,351 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:45,357 [ scc.git] DEBUG [detached HEAD 032d29f] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:45,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:45,357 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:45,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2025-12-20 00:42:46,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2025-12-20 00:42:46,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2025-12-20 00:42:47,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2025-12-20 00:42:47,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2025-12-20 00:42:48,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:48,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:48,656 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:48,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-12-20 00:42:48,656 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:48,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:48,659 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:48,661 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:48,661 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:48,663 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:48,671 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2025-12-20 00:42:49,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2025-12-20 00:42:50,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2025-12-20 00:42:50,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2025-12-20 00:42:50,639 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:50,639 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:50,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:50,641 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:50,679 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:50,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:50,681 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:50,720 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:50,723 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724046a4d0> has no local changes 2025-12-20 00:42:50,723 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:50,728 [ scc.git] DEBUG [detached HEAD 5d0d897] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:50,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:50,729 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:51,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2025-12-20 00:42:51,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2025-12-20 00:42:51,602 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:52,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-12-20 00:42:52,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:53,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:53,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-12-20 00:42:54,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:54,056 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:42:54,056 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:54,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-12-20 00:42:54,056 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:54,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:54,059 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:54,061 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:54,061 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:54,064 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:54,067 [ scc.git] DEBUG Already up to date. 2025-12-20 00:42:54,067 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-12-20 00:42:54,339 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2025-12-20 00:42:54,339 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-12-20 00:42:54,343 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:54,343 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:54,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:54,345 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-12-20 00:42:54,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:54,350 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-12-20 00:42:54,356 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:54,359 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:42:54,359 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:54,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:54,505 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:54,542 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:54,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:54,544 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:54,581 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:54,584 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724268ead0> has no local changes 2025-12-20 00:42:54,585 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:54,590 [ scc.git] DEBUG [detached HEAD 60da43a] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:54,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:54,590 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:54,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2025-12-20 00:42:55,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2025-12-20 00:42:55,478 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:42:56,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-12-20 00:42:56,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:42:57,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:42:57,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-12-20 00:42:57,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:42:57,933 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:42:57,933 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:42:57,933 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-12-20 00:42:57,933 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:57,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:57,936 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:42:57,938 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:42:57,938 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:42:57,941 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:42:57,947 [ scc.git] DEBUG Updating deab817..160d894 2025-12-20 00:42:58,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2025-12-20 00:42:58,648 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-12-20 00:42:58,920 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2025-12-20 00:42:58,920 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-12-20 00:42:58,924 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:42:58,924 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:58,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:58,926 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-12-20 00:42:58,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:58,931 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-12-20 00:42:58,937 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:42:58,940 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:42:58,940 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:42:59,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:42:59,088 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:42:59,126 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:42:59,126 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:42:59,128 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:42:59,167 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:42:59,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72404e8590> has no local changes 2025-12-20 00:42:59,170 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:42:59,175 [ scc.git] DEBUG [detached HEAD ed1b356] merge master -Dorg -Ssuccess-only 2025-12-20 00:42:59,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:42:59,176 [ scc.git] INFO Overriding base-branch from master to main 2025-12-20 00:42:59,176 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:42:59,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2025-12-20 00:43:00,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2025-12-20 00:43:00,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2025-12-20 00:43:01,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-12-20 00:43:01,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:43:02,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:43:02,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-12-20 00:43:03,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:43:03,205 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2025-12-20 00:43:03,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2025-12-20 00:43:04,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2025-12-20 00:43:04,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2025-12-20 00:43:05,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-12-20 00:43:05,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:43:05,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-12-20 00:43:06,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:43:06,402 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-12-20 00:43:06,402 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:43:06,402 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-12-20 00:43:06,402 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:06,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:06,405 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2025-12-20 00:43:06,407 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:43:06,407 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2025-12-20 00:43:06,410 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2025-12-20 00:43:06,417 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2025-12-20 00:43:07,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2025-12-20 00:43:07,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2025-12-20 00:43:07,705 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2025-12-20 00:43:07,982 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-12-20 00:43:07,982 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2025-12-20 00:43:07,986 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2025-12-20 00:43:08,240 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-12-20 00:43:08,240 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2025-12-20 00:43:08,244 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:43:08,244 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:08,244 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:08,246 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-12-20 00:43:08,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:08,251 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-12-20 00:43:08,258 [ scc.git] DEBUG Auto-merging README.rst 2025-12-20 00:43:08,258 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2025-12-20 00:43:08,258 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2025-12-20 00:43:08,258 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-12-20 00:43:08,259 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-12-20 00:43:08,259 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-12-20 00:43:08,261 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2025-12-20 00:43:08,265 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2025-12-20 00:43:08,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:08,410 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-12-20 00:43:08,412 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2025-12-20 00:43:08,415 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2025-12-20 00:43:08,417 [ scc.config] DEBUG Found github.token 2025-12-20 00:43:08,417 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2025-12-20 00:43:08,417 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-12-20 00:43:08,420 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:08,422 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-12-20 00:43:08,430 [ scc.git] DEBUG Auto-merging README.rst 2025-12-20 00:43:08,430 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-12-20 00:43:08,430 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:43:08,433 [ scc.git] DEBUG README.rst | 3 + 2025-12-20 00:43:08,433 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2025-12-20 00:43:08,434 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2025-12-20 00:43:08,434 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2025-12-20 00:43:08,434 [ scc.git] DEBUG setup.py | 5 +- 2025-12-20 00:43:08,434 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2025-12-20 00:43:08,434 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2025-12-20 00:43:08,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:08,833 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:43:08,870 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:08,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:08,872 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:43:08,910 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:43:08,913 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724267a550> has no local changes 2025-12-20 00:43:08,913 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:43:08,919 [ scc.git] DEBUG [detached HEAD 5a73634] merge master -Dorg -Ssuccess-only 2025-12-20 00:43:08,919 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:08,919 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:43:09,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2025-12-20 00:43:09,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2025-12-20 00:43:09,790 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:43:10,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-12-20 00:43:10,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:43:11,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:43:11,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-12-20 00:43:12,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:43:12,276 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:12,276 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:43:12,276 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-12-20 00:43:12,276 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:12,276 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:12,279 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:43:12,281 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:43:12,281 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:43:12,284 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:43:12,286 [ scc.git] DEBUG Already up to date. 2025-12-20 00:43:12,286 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2025-12-20 00:43:12,554 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2025-12-20 00:43:12,554 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2025-12-20 00:43:12,558 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:43:12,558 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:12,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:12,560 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-12-20 00:43:12,563 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:12,565 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-12-20 00:43:12,571 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:43:12,573 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:43:12,573 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:43:12,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:12,746 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:43:12,784 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:12,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:12,786 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:43:12,822 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:43:12,825 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724049f190> has no local changes 2025-12-20 00:43:12,825 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:43:12,831 [ scc.git] DEBUG [detached HEAD 3b20a00] merge master -Dorg -Ssuccess-only 2025-12-20 00:43:12,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:12,831 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:43:13,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2025-12-20 00:43:13,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2025-12-20 00:43:13,733 [ scc.repo] DEBUG # ... Include label: dependencies 2025-12-20 00:43:14,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-12-20 00:43:14,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:43:15,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:43:15,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-12-20 00:43:16,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:43:16,178 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:16,178 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:43:16,178 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-12-20 00:43:16,178 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:16,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:16,181 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:43:16,183 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:43:16,183 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:43:16,186 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:43:16,189 [ scc.git] DEBUG Already up to date. 2025-12-20 00:43:16,189 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2025-12-20 00:43:16,457 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2025-12-20 00:43:16,457 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2025-12-20 00:43:16,461 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:43:16,461 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:16,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:16,463 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-12-20 00:43:16,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:16,468 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-12-20 00:43:16,475 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:43:16,477 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-12-20 00:43:16,477 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-12-20 00:43:16,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:16,626 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:43:16,664 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:16,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:16,666 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:43:16,705 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:43:16,708 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7240532a50> has no local changes 2025-12-20 00:43:16,708 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:43:16,714 [ scc.git] DEBUG [detached HEAD b28530e] merge master -Dorg -Ssuccess-only 2025-12-20 00:43:16,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:16,715 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:43:17,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2025-12-20 00:43:17,062 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:43:17,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-12-20 00:43:17,062 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:17,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:17,064 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-12-20 00:43:17,066 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:43:17,067 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-12-20 00:43:17,069 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-12-20 00:43:17,072 [ scc.git] DEBUG Already up to date. 2025-12-20 00:43:17,072 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:43:17,072 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:17,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:17,074 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:43:17,110 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:17,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:17,113 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:43:17,147 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:43:17,150 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72405032d0> has no local changes 2025-12-20 00:43:17,150 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:43:17,156 [ scc.git] DEBUG [detached HEAD 5c6cdbb] merge master -Dorg -Ssuccess-only 2025-12-20 00:43:17,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:17,156 [ scc.git] INFO Overriding base-branch from master to develop 2025-12-20 00:43:17,156 [ scc.repo] DEBUG ## PRs found: 2025-12-20 00:43:17,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-12-20 00:43:18,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None 2025-12-20 00:43:18,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None 2025-12-20 00:43:18,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-12-20 00:43:19,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-12-20 00:43:19,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None 2025-12-20 00:43:20,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2 2025-12-20 00:43:20,289 [ scc.repo] DEBUG - PR 231 jburel 'Create Release ' 2025-12-20 00:43:20,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-12-20 00:43:21,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-12-20 00:43:21,247 [ scc.repo] DEBUG ## Branches found: 2025-12-20 00:43:21,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-12-20 00:43:21,247 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:21,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:21,249 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-12-20 00:43:21,252 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-12-20 00:43:21,252 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-12-20 00:43:21,254 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-12-20 00:43:21,266 [ scc.git] DEBUG Updating 4b4c755..18a9a75 2025-12-20 00:43:21,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2025-12-20 00:43:22,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2025-12-20 00:43:23,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2025-12-20 00:43:23,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2025-12-20 00:43:24,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2025-12-20 00:43:25,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2025-12-20 00:43:25,282 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head' 2025-12-20 00:43:25,562 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-12-20 00:43:25,562 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD 2025-12-20 00:43:25,566 [ scc.git] DEBUG ## Unique users: [] 2025-12-20 00:43:25,566 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:25,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:25,568 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d' 2025-12-20 00:43:25,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:25,573 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d' 2025-12-20 00:43:25,581 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-12-20 00:43:25,583 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++---- 2025-12-20 00:43:25,583 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-) 2025-12-20 00:43:25,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:25,723 [ scc.git] DEBUG Calling 'git submodule update' 2025-12-20 00:43:25,762 [ scc.git] DEBUG Get sha1 of %s 2025-12-20 00:43:25,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-12-20 00:43:25,764 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:43:25,802 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:43:25,805 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724052ef90> has no local changes 2025-12-20 00:43:25,805 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..18a9a75 Previously merged: - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 231 jburel 'Create Release ' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:43:25,811 [ scc.git] DEBUG [detached HEAD 30afb5e] merge master -Dorg -Ssuccess-only 2025-12-20 00:43:25,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:25,812 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-12-20 00:43:25,882 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2025-12-20 00:43:26,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:26,127 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2025-12-20 00:43:26,129 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2025-12-20 00:43:26,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:26,510 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2025-12-20 00:43:26,512 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2025-12-20 00:43:26,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:26,893 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2025-12-20 00:43:26,895 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2025-12-20 00:43:27,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:27,290 [ scc.config] DEBUG Found submodule.omero-figure.url 2025-12-20 00:43:27,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:27,695 [ scc.config] DEBUG Found submodule.omero-figure.branch 2025-12-20 00:43:27,697 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2025-12-20 00:43:28,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:28,088 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2025-12-20 00:43:28,090 [ scc.config] DEBUG Found submodule.omero-gallery.url 2025-12-20 00:43:28,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:28,473 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2025-12-20 00:43:28,475 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2025-12-20 00:43:28,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:28,860 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2025-12-20 00:43:28,862 [ scc.config] DEBUG Found submodule.omero-mapr.url 2025-12-20 00:43:29,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:29,248 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2025-12-20 00:43:29,249 [ scc.config] DEBUG Found submodule.omero-metadata.url 2025-12-20 00:43:29,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:29,662 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2025-12-20 00:43:29,664 [ scc.config] DEBUG Found submodule.omero-parade.url 2025-12-20 00:43:30,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:30,056 [ scc.config] DEBUG Found submodule.omero-parade.branch 2025-12-20 00:43:30,058 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2025-12-20 00:43:30,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:30,481 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2025-12-20 00:43:30,482 [ scc.config] DEBUG Found submodule.omero-rois.url 2025-12-20 00:43:30,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:30,872 [ scc.config] DEBUG Found submodule.omero-signup.url 2025-12-20 00:43:31,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:31,328 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2025-12-20 00:43:31,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:31,733 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2025-12-20 00:43:31,735 [ scc.config] DEBUG Found submodule.omero-upload.url 2025-12-20 00:43:32,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:32,138 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2025-12-20 00:43:32,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:32,545 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2025-12-20 00:43:32,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:32,930 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2025-12-20 00:43:32,931 [ scc.config] DEBUG Found submodule.omero-weberror.url 2025-12-20 00:43:33,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:33,323 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2025-12-20 00:43:33,325 [ scc.config] DEBUG Found submodule.omero-webtest.url 2025-12-20 00:43:33,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:33,711 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2025-12-20 00:43:33,713 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2025-12-20 00:43:34,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:34,110 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2025-12-20 00:43:34,112 [ scc.config] DEBUG Found submodule.scripts.url 2025-12-20 00:43:34,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-12-20 00:43:34,502 [ scc.config] DEBUG Found submodule.scripts.branch 2025-12-20 00:43:34,502 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-12-20 00:43:34,578 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7243426f10> has local changes 2025-12-20 00:43:34,579 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 181 will-moore 'Add labels support for import' - PR 186 jburel 'Create release from tag' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Repository: ome/omero-figure Excluded PRs: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) Updating 9cc36cde..88b01ef5 Previously merged: - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..18a9a75 Previously merged: - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 231 jburel 'Create Release ' Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)' 2025-12-20 00:43:34,590 [ scc.git] DEBUG [detached HEAD 4dc8406] merge master -Dorg -Ssuccess-only 2025-12-20 00:43:34,590 [ scc.merge] INFO Repository: ome/omero-plugins 2025-12-20 00:43:34,591 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2025-12-20 00:43:34,591 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/minimal-omero-client 2025-12-20 00:43:34,591 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2025-12-20 00:43:34,591 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2025-12-20 00:43:34,591 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/omero-cli-render 2025-12-20 00:43:34,591 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2025-12-20 00:43:34,591 [ scc.merge] INFO Updating ce6e13c..68b7303 2025-12-20 00:43:34,591 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2025-12-20 00:43:34,591 [ scc.merge] INFO 2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2025-12-20 00:43:34,591 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2025-12-20 00:43:34,592 [ scc.merge] INFO Updating 11d3587..37ea700 2025-12-20 00:43:34,592 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:43:34,592 [ scc.merge] INFO 2025-12-20 00:43:34,592 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2025-12-20 00:43:34,592 [ scc.merge] INFO 2025-12-20 00:43:34,592 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2025-12-20 00:43:34,592 [ scc.merge] INFO 2025-12-20 00:43:34,592 [ scc.merge] INFO Repository: ome/omero-figure 2025-12-20 00:43:34,592 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft) 2025-12-20 00:43:34,592 [ scc.merge] INFO Updating 9cc36cde..88b01ef5 2025-12-20 00:43:34,592 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2025-12-20 00:43:34,593 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Repository: ome/omero-gallery 2025-12-20 00:43:34,593 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Repository: ome/omero-iviewer 2025-12-20 00:43:34,593 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2025-12-20 00:43:34,593 [ scc.merge] INFO Updating 7a798ce..5e2de43 2025-12-20 00:43:34,593 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:43:34,593 [ scc.merge] INFO 2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-mapr 2025-12-20 00:43:34,594 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-metadata 2025-12-20 00:43:34,594 [ scc.merge] INFO Updating 3cd120c..55060a2 2025-12-20 00:43:34,594 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-parade 2025-12-20 00:43:34,594 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-rois 2025-12-20 00:43:34,594 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,594 [ scc.merge] INFO 2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-signup 2025-12-20 00:43:34,595 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2025-12-20 00:43:34,595 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2025-12-20 00:43:34,595 [ scc.merge] INFO Updating cda3ec6..c8a0015 2025-12-20 00:43:34,595 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-upload 2025-12-20 00:43:34,595 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2025-12-20 00:43:34,595 [ scc.merge] INFO Updating deab817..160d894 2025-12-20 00:43:34,595 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 20 jburel 'Build' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-web-zarr 2025-12-20 00:43:34,595 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2025-12-20 00:43:34,595 [ scc.merge] INFO Updating 8f3c313..4e1e685 2025-12-20 00:43:34,595 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Conflicting PRs (not included): 2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-12-20 00:43:34,595 [ scc.merge] INFO 2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2025-12-20 00:43:34,595 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2025-12-20 00:43:34,596 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2025-12-20 00:43:34,596 [ scc.merge] INFO Already up to date. 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO Repository: ome/scripts 2025-12-20 00:43:34,596 [ scc.merge] INFO Excluded PRs: 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-12-20 00:43:34,596 [ scc.merge] INFO Updating 4b4c755..18a9a75 2025-12-20 00:43:34,596 [ scc.merge] INFO Previously merged: 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] INFO Merged PRs: 2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2025-12-20 00:43:34,596 [ scc.merge] INFO 2025-12-20 00:43:34,596 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-12-20 00:43:34,596 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-12-20 00:43:34,598 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-12-20 00:43:34,600 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-12-20 00:43:34,603 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-12-20 00:43:34,605 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-12-20 00:43:34,607 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-12-20 00:43:34,609 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-12-20 00:43:34,611 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-12-20 00:43:34,613 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-12-20 00:43:34,615 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-12-20 00:43:34,618 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-12-20 00:43:34,620 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-12-20 00:43:34,622 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-12-20 00:43:34,624 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-12-20 00:43:34,626 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-12-20 00:43:34,628 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-12-20 00:43:34,630 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-12-20 00:43:34,632 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-12-20 00:43:34,635 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-12-20 00:43:34,637 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-12-20 00:43:34,639 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-12-20 00:43:34,641 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-12-20 00:43:34,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-12-20 00:43:34,643 [ scc.git] DEBUG Calling 'git remote' 2025-12-20 00:43:34,645 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 1a0e7b4] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD d17886a] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-12-20 00:44:20,872 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-12-20 00:44:30,127 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-12-20 00:44:32,517 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-12-20 00:44:37,341 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-12-20 00:45:16,402 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS