Console Output
Skipping 176 KB..
Full LogL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:41:49,491 [ scc.git] DEBUG [detached HEAD f9236cc] merge master -Dorg -Ssuccess-only
2025-12-20 00:41:49,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:41:49,491 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:41:49,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-12-20 00:41:50,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2025-12-20 00:41:50,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2025-12-20 00:41:50,923 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:41:51,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-20 00:41:51,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:41:52,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:41:53,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-20 00:41:53,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:41:53,418 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:41:53,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-12-20 00:41:54,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-20 00:41:54,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:41:55,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-20 00:41:55,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:41:55,767 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:41:56,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-12-20 00:41:56,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-12-20 00:41:57,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-20 00:41:57,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:41:58,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-20 00:41:58,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:41:58,731 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-12-20 00:41:58,731 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:41:58,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-20 00:41:58,731 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:41:58,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:41:58,734 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:41:58,736 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:41:58,736 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:41:58,739 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:41:58,742 [ scc.git] DEBUG Already up to date.
2025-12-20 00:41:58,742 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-12-20 00:41:59,010 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-20 00:41:59,011 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-12-20 00:41:59,014 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-12-20 00:41:59,266 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-20 00:41:59,267 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-12-20 00:41:59,270 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2025-12-20 00:41:59,522 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-20 00:41:59,522 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2025-12-20 00:41:59,525 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:41:59,525 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:41:59,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:41:59,527 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-20 00:41:59,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:41:59,533 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-20 00:41:59,540 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:41:59,543 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-12-20 00:41:59,543 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-12-20 00:41:59,543 [ scc.git] DEBUG requirements.txt | 2 +-
2025-12-20 00:41:59,544 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-12-20 00:41:59,544 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-12-20 00:41:59,544 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-12-20 00:41:59,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:41:59,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-20 00:41:59,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:41:59,696 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-20 00:41:59,704 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:41:59,706 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:41:59,706 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:00,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:00,101 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-20 00:42:00,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:00,107 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-20 00:42:00,113 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2025-12-20 00:42:00,114 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2025-12-20 00:42:00,114 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-20 00:42:00,114 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-20 00:42:00,116 [ scc.git] DEBUG Calling 'git reset --hard 51882375681e517fc75757f36dd1a92ac63d4bdc'
2025-12-20 00:42:00,120 [ scc.git] DEBUG HEAD is now at 5188237 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2025-12-20 00:42:00,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:00,489 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-20 00:42:00,491 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2025-12-20 00:42:00,494 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2025-12-20 00:42:00,496 [ scc.config] DEBUG Found github.token
2025-12-20 00:42:00,496 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2025-12-20 00:42:00,496 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:00,533 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:00,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:00,536 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:00,573 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:00,576 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724048be10> has no local changes
2025-12-20 00:42:00,576 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:00,582 [ scc.git] DEBUG [detached HEAD 546d6f7] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:00,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:00,582 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:01,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-12-20 00:42:01,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-12-20 00:42:01,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-12-20 00:42:02,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-20 00:42:02,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:03,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-20 00:42:03,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:03,882 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-20 00:42:04,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-12-20 00:42:04,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-12-20 00:42:05,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-20 00:42:05,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:06,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-20 00:42:06,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:06,918 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-20 00:42:06,918 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:06,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-20 00:42:06,918 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:06,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:06,920 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:06,923 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:06,923 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:06,926 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:06,932 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-12-20 00:42:07,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-12-20 00:42:07,609 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-12-20 00:42:07,883 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-20 00:42:07,883 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-12-20 00:42:07,887 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-12-20 00:42:08,148 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-20 00:42:08,148 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-12-20 00:42:08,153 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:08,153 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:08,153 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:08,155 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-20 00:42:08,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:08,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-20 00:42:08,173 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-12-20 00:42:08,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-12-20 00:42:08,173 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-20 00:42:08,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-20 00:42:08,173 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-20 00:42:08,173 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-20 00:42:08,176 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-20 00:42:08,180 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-20 00:42:08,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:08,339 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-20 00:42:08,342 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-20 00:42:08,345 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-12-20 00:42:08,347 [ scc.config] DEBUG Found github.token
2025-12-20 00:42:08,347 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-12-20 00:42:08,347 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-20 00:42:08,351 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:08,353 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-20 00:42:08,367 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-20 00:42:08,367 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-20 00:42:08,367 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-12-20 00:42:08,367 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-20 00:42:08,367 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-20 00:42:08,370 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-20 00:42:08,374 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-20 00:42:08,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:08,731 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-20 00:42:08,735 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-20 00:42:08,737 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-12-20 00:42:08,739 [ scc.config] DEBUG Found github.token
2025-12-20 00:42:08,739 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-12-20 00:42:08,739 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:08,777 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:08,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:08,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:08,817 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:08,821 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7242647950> has no local changes
2025-12-20 00:42:08,821 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:08,827 [ scc.git] DEBUG [detached HEAD 7f88f69] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:08,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:08,828 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:09,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-12-20 00:42:09,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-12-20 00:42:10,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-20 00:42:10,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:11,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:11,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-20 00:42:12,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:12,348 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:42:12,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-12-20 00:42:12,817 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:13,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-20 00:42:13,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:14,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:14,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-20 00:42:15,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:15,324 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-20 00:42:15,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-12-20 00:42:15,808 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:16,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-20 00:42:16,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:17,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:17,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-20 00:42:18,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:18,321 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-20 00:42:18,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-12-20 00:42:19,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-12-20 00:42:19,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-12-20 00:42:20,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-12-20 00:42:20,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-12-20 00:42:21,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-12-20 00:42:21,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-12-20 00:42:21,554 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:21,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-20 00:42:21,555 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:21,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:21,557 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:21,560 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:21,560 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:21,562 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:21,565 [ scc.git] DEBUG Already up to date.
2025-12-20 00:42:21,565 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-12-20 00:42:21,841 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-20 00:42:21,841 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-12-20 00:42:21,845 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-12-20 00:42:22,096 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-20 00:42:22,096 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-12-20 00:42:22,100 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-12-20 00:42:22,353 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-20 00:42:22,353 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-12-20 00:42:22,357 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:22,357 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:22,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:22,359 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-20 00:42:22,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:22,364 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-20 00:42:22,371 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:22,374 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-12-20 00:42:22,374 [ scc.git] DEBUG package.json | 2 +-
2025-12-20 00:42:22,374 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-12-20 00:42:22,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:22,542 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-12-20 00:42:22,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:22,547 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-12-20 00:42:22,556 [ scc.git] DEBUG Auto-merging package-lock.json
2025-12-20 00:42:22,556 [ scc.git] DEBUG Auto-merging package.json
2025-12-20 00:42:22,557 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:22,560 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-12-20 00:42:22,560 [ scc.git] DEBUG package.json | 2 +-
2025-12-20 00:42:22,560 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-12-20 00:42:22,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:22,943 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-20 00:42:22,946 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:22,948 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-20 00:42:22,955 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:22,958 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:42:22,958 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:23,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:23,339 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:23,377 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:23,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:23,379 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:23,416 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:23,419 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7240467f50> has no local changes
2025-12-20 00:42:23,420 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:23,425 [ scc.git] DEBUG [detached HEAD 15033f1] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:23,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:23,426 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:23,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-12-20 00:42:24,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-12-20 00:42:24,460 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:25,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-20 00:42:25,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:26,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:26,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-20 00:42:26,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:26,976 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:42:26,976 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:26,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-20 00:42:26,976 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:26,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:26,979 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:26,981 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:26,981 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:26,984 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:26,986 [ scc.git] DEBUG Already up to date.
2025-12-20 00:42:26,987 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-12-20 00:42:27,248 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-12-20 00:42:27,248 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-12-20 00:42:27,252 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:27,252 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:27,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:27,254 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-20 00:42:27,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:27,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-20 00:42:27,265 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:27,268 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:42:27,268 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:27,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:27,400 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:27,438 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:27,438 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:27,440 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:27,479 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:27,482 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72404a4d90> has no local changes
2025-12-20 00:42:27,482 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:27,487 [ scc.git] DEBUG [detached HEAD 2e5fbc3] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:27,488 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:27,488 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:27,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-12-20 00:42:28,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-12-20 00:42:28,432 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:28,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-20 00:42:29,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:30,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:30,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-20 00:42:30,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:31,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-20 00:42:31,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-12-20 00:42:31,896 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:42:32,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-12-20 00:42:32,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-12-20 00:42:33,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-20 00:42:33,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:34,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:34,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-20 00:42:35,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:35,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-20 00:42:36,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-12-20 00:42:36,231 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-12-20 00:42:36,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-12-20 00:42:36,715 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:36,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-20 00:42:36,715 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:36,715 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:36,718 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:36,720 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:36,720 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:36,723 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:36,726 [ scc.git] DEBUG Already up to date.
2025-12-20 00:42:36,726 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-12-20 00:42:36,993 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-20 00:42:36,993 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-12-20 00:42:36,997 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-12-20 00:42:37,249 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-20 00:42:37,249 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-12-20 00:42:37,252 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:37,253 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:37,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:37,255 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-20 00:42:37,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:37,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-20 00:42:37,266 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:37,269 [ scc.git] DEBUG setup.py | 4 +-
2025-12-20 00:42:37,269 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-12-20 00:42:37,269 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-12-20 00:42:37,269 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-12-20 00:42:37,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:37,426 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-12-20 00:42:37,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:37,431 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-12-20 00:42:37,438 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:37,440 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:42:37,440 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:37,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:37,818 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:37,858 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:37,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:37,860 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:37,898 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:37,901 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724257ba50> has no local changes
2025-12-20 00:42:37,902 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:37,907 [ scc.git] DEBUG [detached HEAD a51f3c6] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:37,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:37,908 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:38,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-12-20 00:42:39,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-12-20 00:42:39,015 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:39,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-20 00:42:39,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:40,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:40,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-20 00:42:41,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:41,373 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:42:41,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-12-20 00:42:42,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-12-20 00:42:42,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-20 00:42:43,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:43,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-20 00:42:44,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:44,168 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-20 00:42:44,168 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:44,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-20 00:42:44,168 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:44,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:44,170 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:44,173 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:44,173 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:44,175 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:44,178 [ scc.git] DEBUG Already up to date.
2025-12-20 00:42:44,178 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-20 00:42:44,449 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-20 00:42:44,449 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-20 00:42:44,452 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-20 00:42:44,705 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-20 00:42:44,706 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-20 00:42:44,709 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:44,709 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:44,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:44,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-20 00:42:44,714 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:44,717 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG Auto-merging setup.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-12-20 00:42:44,724 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-20 00:42:44,725 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-20 00:42:44,727 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-20 00:42:44,731 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-12-20 00:42:44,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:44,877 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-20 00:42:44,880 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-20 00:42:44,883 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2025-12-20 00:42:44,885 [ scc.config] DEBUG Found github.token
2025-12-20 00:42:44,885 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-12-20 00:42:44,885 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-20 00:42:44,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:44,889 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-20 00:42:44,896 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:44,898 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:42:44,898 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:45,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:45,270 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:45,309 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:45,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:45,311 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:45,348 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:45,351 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724049e7d0> has no local changes
2025-12-20 00:42:45,351 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:45,357 [ scc.git] DEBUG [detached HEAD 032d29f] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:45,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:45,357 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:45,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-12-20 00:42:46,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-12-20 00:42:46,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-12-20 00:42:47,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2025-12-20 00:42:47,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-12-20 00:42:48,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:48,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:48,656 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:48,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-20 00:42:48,656 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:48,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:48,659 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:48,661 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:48,661 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:48,663 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:48,671 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2025-12-20 00:42:49,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2025-12-20 00:42:50,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2025-12-20 00:42:50,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2025-12-20 00:42:50,639 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:50,639 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:50,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:50,641 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:50,679 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:50,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:50,681 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:50,720 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:50,723 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724046a4d0> has no local changes
2025-12-20 00:42:50,723 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:50,728 [ scc.git] DEBUG [detached HEAD 5d0d897] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:50,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:50,729 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:51,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-12-20 00:42:51,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-12-20 00:42:51,602 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:52,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-20 00:42:52,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:53,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:53,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-20 00:42:54,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:54,056 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:42:54,056 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:54,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-20 00:42:54,056 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:54,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:54,059 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:54,061 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:54,061 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:54,064 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:54,067 [ scc.git] DEBUG Already up to date.
2025-12-20 00:42:54,067 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-20 00:42:54,339 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-12-20 00:42:54,339 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-20 00:42:54,343 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:54,343 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:54,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:54,345 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-20 00:42:54,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:54,350 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-20 00:42:54,356 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:54,359 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:42:54,359 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:54,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:54,505 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:54,542 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:54,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:54,544 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:54,581 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:54,584 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724268ead0> has no local changes
2025-12-20 00:42:54,585 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:54,590 [ scc.git] DEBUG [detached HEAD 60da43a] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:54,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:54,590 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:54,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-12-20 00:42:55,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-12-20 00:42:55,478 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:42:56,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-20 00:42:56,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:42:57,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:42:57,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-20 00:42:57,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:42:57,933 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:42:57,933 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:42:57,933 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-20 00:42:57,933 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:57,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:57,936 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:42:57,938 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:42:57,938 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:42:57,941 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:42:57,947 [ scc.git] DEBUG Updating deab817..160d894
2025-12-20 00:42:58,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-12-20 00:42:58,648 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-20 00:42:58,920 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-12-20 00:42:58,920 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-20 00:42:58,924 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:42:58,924 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:58,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:58,926 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-20 00:42:58,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:58,931 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-20 00:42:58,937 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:42:58,940 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:42:58,940 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:42:59,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:42:59,088 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:42:59,126 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:42:59,126 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:42:59,128 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:42:59,167 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:42:59,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72404e8590> has no local changes
2025-12-20 00:42:59,170 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:42:59,175 [ scc.git] DEBUG [detached HEAD ed1b356] merge master -Dorg -Ssuccess-only
2025-12-20 00:42:59,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:42:59,176 [ scc.git] INFO Overriding base-branch from master to main
2025-12-20 00:42:59,176 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:42:59,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-12-20 00:43:00,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-12-20 00:43:00,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-12-20 00:43:01,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-20 00:43:01,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:43:02,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:43:02,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-20 00:43:03,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:43:03,205 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-12-20 00:43:03,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-12-20 00:43:04,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-12-20 00:43:04,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-12-20 00:43:05,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-20 00:43:05,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:43:05,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-20 00:43:06,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:43:06,402 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-20 00:43:06,402 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:43:06,402 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-20 00:43:06,402 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:06,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:06,405 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-12-20 00:43:06,407 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:43:06,407 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-12-20 00:43:06,410 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-12-20 00:43:06,417 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2025-12-20 00:43:07,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2025-12-20 00:43:07,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-12-20 00:43:07,705 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-12-20 00:43:07,982 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-20 00:43:07,982 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-12-20 00:43:07,986 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-12-20 00:43:08,240 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-20 00:43:08,240 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-12-20 00:43:08,244 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:43:08,244 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:08,244 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:08,246 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-20 00:43:08,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:08,251 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-20 00:43:08,258 [ scc.git] DEBUG Auto-merging README.rst
2025-12-20 00:43:08,258 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-12-20 00:43:08,258 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-12-20 00:43:08,258 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-20 00:43:08,259 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-20 00:43:08,259 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-20 00:43:08,261 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-20 00:43:08,265 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2025-12-20 00:43:08,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:08,410 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-20 00:43:08,412 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-20 00:43:08,415 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#5](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-12-20 00:43:08,417 [ scc.config] DEBUG Found github.token
2025-12-20 00:43:08,417 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-12-20 00:43:08,417 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-20 00:43:08,420 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:08,422 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-20 00:43:08,430 [ scc.git] DEBUG Auto-merging README.rst
2025-12-20 00:43:08,430 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-20 00:43:08,430 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:43:08,433 [ scc.git] DEBUG README.rst | 3 +
2025-12-20 00:43:08,433 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-12-20 00:43:08,434 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-12-20 00:43:08,434 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-12-20 00:43:08,434 [ scc.git] DEBUG setup.py | 5 +-
2025-12-20 00:43:08,434 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-12-20 00:43:08,434 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-12-20 00:43:08,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:08,833 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:43:08,870 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:08,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:08,872 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:43:08,910 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:43:08,913 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724267a550> has no local changes
2025-12-20 00:43:08,913 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:43:08,919 [ scc.git] DEBUG [detached HEAD 5a73634] merge master -Dorg -Ssuccess-only
2025-12-20 00:43:08,919 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:08,919 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:43:09,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-12-20 00:43:09,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-12-20 00:43:09,790 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:43:10,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-20 00:43:10,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:43:11,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:43:11,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-20 00:43:12,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:43:12,276 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:12,276 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:43:12,276 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-20 00:43:12,276 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:12,276 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:12,279 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:43:12,281 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:43:12,281 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:43:12,284 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:43:12,286 [ scc.git] DEBUG Already up to date.
2025-12-20 00:43:12,286 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-12-20 00:43:12,554 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-12-20 00:43:12,554 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-12-20 00:43:12,558 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:43:12,558 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:12,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:12,560 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-20 00:43:12,563 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:12,565 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-20 00:43:12,571 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:43:12,573 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:43:12,573 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:43:12,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:12,746 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:43:12,784 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:12,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:12,786 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:43:12,822 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:43:12,825 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724049f190> has no local changes
2025-12-20 00:43:12,825 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:43:12,831 [ scc.git] DEBUG [detached HEAD 3b20a00] merge master -Dorg -Ssuccess-only
2025-12-20 00:43:12,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:12,831 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:43:13,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-12-20 00:43:13,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-12-20 00:43:13,733 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-20 00:43:14,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-20 00:43:14,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:43:15,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:43:15,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-20 00:43:16,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:43:16,178 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:16,178 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:43:16,178 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-20 00:43:16,178 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:16,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:16,181 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:43:16,183 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:43:16,183 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:43:16,186 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:43:16,189 [ scc.git] DEBUG Already up to date.
2025-12-20 00:43:16,189 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-12-20 00:43:16,457 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-12-20 00:43:16,457 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-12-20 00:43:16,461 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:43:16,461 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:16,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:16,463 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-20 00:43:16,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:16,468 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-20 00:43:16,475 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:43:16,477 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-20 00:43:16,477 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-20 00:43:16,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:16,626 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:43:16,664 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:16,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:16,666 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:43:16,705 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:43:16,708 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7240532a50> has no local changes
2025-12-20 00:43:16,708 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:43:16,714 [ scc.git] DEBUG [detached HEAD b28530e] merge master -Dorg -Ssuccess-only
2025-12-20 00:43:16,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:16,715 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:43:17,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2025-12-20 00:43:17,062 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:43:17,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-20 00:43:17,062 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:17,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:17,064 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-20 00:43:17,066 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:43:17,067 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-20 00:43:17,069 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-20 00:43:17,072 [ scc.git] DEBUG Already up to date.
2025-12-20 00:43:17,072 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:43:17,072 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:17,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:17,074 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:43:17,110 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:17,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:17,113 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:43:17,147 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:43:17,150 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f72405032d0> has no local changes
2025-12-20 00:43:17,150 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:43:17,156 [ scc.git] DEBUG [detached HEAD 5c6cdbb] merge master -Dorg -Ssuccess-only
2025-12-20 00:43:17,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:17,156 [ scc.git] INFO Overriding base-branch from master to develop
2025-12-20 00:43:17,156 [ scc.repo] DEBUG ## PRs found:
2025-12-20 00:43:17,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-12-20 00:43:18,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None
2025-12-20 00:43:18,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-20 00:43:18,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-20 00:43:19,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-20 00:43:19,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-20 00:43:20,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2
2025-12-20 00:43:20,289 [ scc.repo] DEBUG - PR 231 jburel 'Create Release '
2025-12-20 00:43:20,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-12-20 00:43:21,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-12-20 00:43:21,247 [ scc.repo] DEBUG ## Branches found:
2025-12-20 00:43:21,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-20 00:43:21,247 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:21,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:21,249 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-12-20 00:43:21,252 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-20 00:43:21,252 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-12-20 00:43:21,254 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-12-20 00:43:21,266 [ scc.git] DEBUG Updating 4b4c755..18a9a75
2025-12-20 00:43:21,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2025-12-20 00:43:22,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2025-12-20 00:43:23,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2025-12-20 00:43:23,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-12-20 00:43:24,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-12-20 00:43:25,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-12-20 00:43:25,282 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head'
2025-12-20 00:43:25,562 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-12-20 00:43:25,562 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD
2025-12-20 00:43:25,566 [ scc.git] DEBUG ## Unique users: []
2025-12-20 00:43:25,566 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:25,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:25,568 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-20 00:43:25,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:25,573 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-20 00:43:25,581 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-20 00:43:25,583 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++----
2025-12-20 00:43:25,583 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-)
2025-12-20 00:43:25,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:25,723 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-20 00:43:25,762 [ scc.git] DEBUG Get sha1 of %s
2025-12-20 00:43:25,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-20 00:43:25,764 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:43:25,802 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:43:25,805 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f724052ef90> has no local changes
2025-12-20 00:43:25,805 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:43:25,811 [ scc.git] DEBUG [detached HEAD 30afb5e] merge master -Dorg -Ssuccess-only
2025-12-20 00:43:25,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:25,812 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-20 00:43:25,882 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-12-20 00:43:26,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:26,127 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-12-20 00:43:26,129 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-12-20 00:43:26,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:26,510 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-12-20 00:43:26,512 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-12-20 00:43:26,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:26,893 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-12-20 00:43:26,895 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-12-20 00:43:27,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:27,290 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-12-20 00:43:27,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:27,695 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-12-20 00:43:27,697 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-12-20 00:43:28,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:28,088 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-12-20 00:43:28,090 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-12-20 00:43:28,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:28,473 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-12-20 00:43:28,475 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-12-20 00:43:28,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:28,860 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-12-20 00:43:28,862 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-12-20 00:43:29,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:29,248 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-12-20 00:43:29,249 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-12-20 00:43:29,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:29,662 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-12-20 00:43:29,664 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-12-20 00:43:30,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:30,056 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-12-20 00:43:30,058 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-12-20 00:43:30,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:30,481 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-12-20 00:43:30,482 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-12-20 00:43:30,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:30,872 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-12-20 00:43:31,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:31,328 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-12-20 00:43:31,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:31,733 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-12-20 00:43:31,735 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-12-20 00:43:32,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:32,138 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-12-20 00:43:32,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:32,545 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-12-20 00:43:32,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:32,930 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-12-20 00:43:32,931 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-12-20 00:43:33,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:33,323 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-12-20 00:43:33,325 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-12-20 00:43:33,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:33,711 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-12-20 00:43:33,713 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-12-20 00:43:34,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:34,110 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-12-20 00:43:34,112 [ scc.config] DEBUG Found submodule.scripts.url
2025-12-20 00:43:34,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-20 00:43:34,502 [ scc.config] DEBUG Found submodule.scripts.branch
2025-12-20 00:43:34,502 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-20 00:43:34,578 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7243426f10> has local changes
2025-12-20 00:43:34,579 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..88b01ef5
Previously merged:
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#5 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/5/)'
2025-12-20 00:43:34,590 [ scc.git] DEBUG [detached HEAD 4dc8406] merge master -Dorg -Ssuccess-only
2025-12-20 00:43:34,590 [ scc.merge] INFO Repository: ome/omero-plugins
2025-12-20 00:43:34,591 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-12-20 00:43:34,591 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-12-20 00:43:34,591 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-12-20 00:43:34,591 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-12-20 00:43:34,591 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-12-20 00:43:34,591 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-12-20 00:43:34,591 [ scc.merge] INFO Updating ce6e13c..68b7303
2025-12-20 00:43:34,591 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-12-20 00:43:34,591 [ scc.merge] INFO
2025-12-20 00:43:34,591 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-12-20 00:43:34,591 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,591 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-12-20 00:43:34,592 [ scc.merge] INFO Updating 11d3587..37ea700
2025-12-20 00:43:34,592 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:43:34,592 [ scc.merge] INFO
2025-12-20 00:43:34,592 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2025-12-20 00:43:34,592 [ scc.merge] INFO
2025-12-20 00:43:34,592 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-12-20 00:43:34,592 [ scc.merge] INFO
2025-12-20 00:43:34,592 [ scc.merge] INFO Repository: ome/omero-figure
2025-12-20 00:43:34,592 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-12-20 00:43:34,592 [ scc.merge] INFO Updating 9cc36cde..88b01ef5
2025-12-20 00:43:34,592 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-12-20 00:43:34,592 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-12-20 00:43:34,593 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Repository: ome/omero-gallery
2025-12-20 00:43:34,593 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-12-20 00:43:34,593 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-12-20 00:43:34,593 [ scc.merge] INFO Updating 7a798ce..5e2de43
2025-12-20 00:43:34,593 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:43:34,593 [ scc.merge] INFO
2025-12-20 00:43:34,593 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2025-12-20 00:43:34,593 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-mapr
2025-12-20 00:43:34,594 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-metadata
2025-12-20 00:43:34,594 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-12-20 00:43:34,594 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-parade
2025-12-20 00:43:34,594 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Repository: ome/omero-rois
2025-12-20 00:43:34,594 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-20 00:43:34,594 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,594 [ scc.merge] INFO
2025-12-20 00:43:34,594 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-12-20 00:43:34,594 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-signup
2025-12-20 00:43:34,595 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-12-20 00:43:34,595 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-12-20 00:43:34,595 [ scc.merge] INFO Updating cda3ec6..c8a0015
2025-12-20 00:43:34,595 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-upload
2025-12-20 00:43:34,595 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-12-20 00:43:34,595 [ scc.merge] INFO Updating deab817..160d894
2025-12-20 00:43:34,595 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-12-20 00:43:34,595 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-12-20 00:43:34,595 [ scc.merge] INFO Updating 8f3c313..4e1e685
2025-12-20 00:43:34,595 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-20 00:43:34,595 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-20 00:43:34,595 [ scc.merge] INFO
2025-12-20 00:43:34,595 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-12-20 00:43:34,595 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-12-20 00:43:34,596 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-12-20 00:43:34,596 [ scc.merge] INFO Already up to date.
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO Repository: ome/scripts
2025-12-20 00:43:34,596 [ scc.merge] INFO Excluded PRs:
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-12-20 00:43:34,596 [ scc.merge] INFO Updating 4b4c755..18a9a75
2025-12-20 00:43:34,596 [ scc.merge] INFO Previously merged:
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] INFO Merged PRs:
2025-12-20 00:43:34,596 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2025-12-20 00:43:34,596 [ scc.merge] INFO
2025-12-20 00:43:34,596 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-20 00:43:34,596 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-12-20 00:43:34,598 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-12-20 00:43:34,600 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-12-20 00:43:34,603 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-12-20 00:43:34,605 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-12-20 00:43:34,607 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-12-20 00:43:34,609 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-12-20 00:43:34,611 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-12-20 00:43:34,613 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-20 00:43:34,615 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-20 00:43:34,618 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-20 00:43:34,620 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-20 00:43:34,622 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-20 00:43:34,624 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-20 00:43:34,626 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-20 00:43:34,628 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-20 00:43:34,630 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-20 00:43:34,632 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-20 00:43:34,635 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-20 00:43:34,637 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-20 00:43:34,639 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-20 00:43:34,641 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-20 00:43:34,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-20 00:43:34,643 [ scc.git] DEBUG Calling 'git remote'
2025-12-20 00:43:34,645 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 1a0e7b4] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD d17886a] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-12-20 00:44:20,872 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-12-20 00:44:30,127 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-12-20 00:44:32,517 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-20 00:44:37,341 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-20 00:45:16,402 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
