Skipping 225 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-22 00:53:53,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:53,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-22 00:53:54,058 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:54,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:53:54,277 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:53:54,529 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:54,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-22 00:53:55,019 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:55,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-22 00:53:55,512 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:55,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-22 00:53:56,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:56,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:53:56,580 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:56,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-22 00:53:57,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:57,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:53:57,330 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-22 00:53:57,330 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:53:57,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-22 00:53:57,330 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:53:57,330 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:53:57,333 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:53:57,335 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:53:57,335 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:53:57,338 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:53:57,341 [ scc.git] DEBUG Already up to date.
2025-08-22 00:53:57,341 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-22 00:53:57,622 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-22 00:53:57,622 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-22 00:53:57,627 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-22 00:53:57,899 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-22 00:53:57,899 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-22 00:53:57,904 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:53:57,904 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:53:57,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:53:57,906 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-22 00:53:57,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:53:57,913 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-22 00:53:57,922 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:53:57,926 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-22 00:53:57,926 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-22 00:53:57,926 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-22 00:53:57,926 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-22 00:53:57,926 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-22 00:53:57,926 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-22 00:53:57,928 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:58,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:53:58,146 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-22 00:53:58,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:53:58,153 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-22 00:53:58,162 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:53:58,165 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-22 00:53:58,165 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-22 00:53:58,398 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:58,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:53:58,591 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:53:58,633 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:53:58,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:53:58,635 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:53:58,675 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:53:58,679 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8fe0ed0> has no local changes
2025-08-22 00:53:58,679 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:53:58,686 [ scc.git] DEBUG [detached HEAD 739199a] merge master -Dorg -Ssuccess-only
2025-08-22 00:53:58,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:53:58,686 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:53:58,843 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:59,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-22 00:53:59,402 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:53:59,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-22 00:53:59,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:00,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-22 00:54:00,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:00,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-22 00:54:01,003 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:01,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:01,517 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:01,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-22 00:54:02,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:02,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:02,332 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-22 00:54:02,584 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:02,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-22 00:54:03,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:03,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-22 00:54:03,578 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:03,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-22 00:54:04,120 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:04,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:04,630 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:04,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-22 00:54:05,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:05,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:05,302 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-22 00:54:05,302 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:05,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-22 00:54:05,302 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:05,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:05,305 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:05,307 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:05,307 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:05,310 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:05,319 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-22 00:54:05,554 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:06,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-22 00:54:06,001 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-22 00:54:06,299 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-22 00:54:06,299 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-22 00:54:06,305 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-22 00:54:06,595 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-22 00:54:06,595 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-22 00:54:06,600 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:06,600 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:06,600 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:06,602 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-22 00:54:06,607 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:06,609 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-22 00:54:06,623 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-22 00:54:06,623 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-22 00:54:06,623 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-22 00:54:06,623 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-22 00:54:06,623 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-22 00:54:06,624 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-22 00:54:06,627 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-22 00:54:06,631 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-22 00:54:06,634 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:06,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:06,824 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-22 00:54:06,829 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-22 00:54:06,832 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#511](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-22 00:54:06,834 [ scc.config] DEBUG Found github.token
2025-08-22 00:54:06,834 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-22 00:54:06,834 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-22 00:54:06,839 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:06,841 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-22 00:54:06,857 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-22 00:54:06,857 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-22 00:54:06,857 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-22 00:54:06,857 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-22 00:54:06,857 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-22 00:54:06,860 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-22 00:54:06,866 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-22 00:54:07,076 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:07,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:07,291 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-22 00:54:07,296 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-22 00:54:07,299 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#511](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-22 00:54:07,301 [ scc.config] DEBUG Found github.token
2025-08-22 00:54:07,301 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-22 00:54:07,301 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:07,343 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:07,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:07,345 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:07,385 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:07,389 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8fb1cd0> has no local changes
2025-08-22 00:54:07,389 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:07,396 [ scc.git] DEBUG [detached HEAD 0daf947] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:07,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:07,397 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:07,544 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:07,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-22 00:54:08,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:08,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-22 00:54:08,695 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:08,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-22 00:54:09,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:09,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:09,816 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:10,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:10,345 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:10,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-22 00:54:10,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:11,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:11,120 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:54:11,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:11,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-22 00:54:11,702 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-22 00:54:11,954 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:12,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-22 00:54:12,583 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:12,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:13,149 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:13,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:13,704 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:14,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-22 00:54:14,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:14,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:14,539 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-22 00:54:14,791 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:15,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-22 00:54:15,062 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-22 00:54:15,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:15,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-22 00:54:15,941 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:16,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:16,570 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:16,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:17,097 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:17,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-22 00:54:17,677 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:17,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:17,904 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-22 00:54:18,156 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:18,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-22 00:54:18,669 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:18,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-22 00:54:19,175 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:19,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-22 00:54:19,692 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:19,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-22 00:54:20,213 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:20,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-22 00:54:20,743 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:21,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-22 00:54:21,271 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:21,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-22 00:54:21,529 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:21,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-22 00:54:21,530 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:21,530 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:21,532 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:21,535 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:21,535 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:21,538 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:21,541 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:21,541 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-22 00:54:21,864 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-22 00:54:21,864 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-22 00:54:21,869 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-22 00:54:22,153 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-22 00:54:22,153 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-22 00:54:22,157 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-22 00:54:22,439 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-22 00:54:22,439 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-22 00:54:22,444 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:22,444 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:22,444 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:22,446 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-22 00:54:22,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:22,452 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-22 00:54:22,461 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:54:22,464 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-22 00:54:22,464 [ scc.git] DEBUG package.json | 2 +-
2025-08-22 00:54:22,464 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-22 00:54:22,467 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:22,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:22,682 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-22 00:54:22,685 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:22,687 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-22 00:54:22,698 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-22 00:54:22,698 [ scc.git] DEBUG Auto-merging package.json
2025-08-22 00:54:22,699 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:54:22,702 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-22 00:54:22,702 [ scc.git] DEBUG package.json | 2 +-
2025-08-22 00:54:22,702 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-22 00:54:22,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:23,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:23,144 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-22 00:54:23,147 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:23,150 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-22 00:54:23,159 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:54:23,162 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-22 00:54:23,162 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-22 00:54:23,396 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:23,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:23,588 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:23,630 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:23,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:23,633 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:23,674 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:23,678 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8f40d90> has no local changes
2025-08-22 00:54:23,678 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:23,684 [ scc.git] DEBUG [detached HEAD fb4864a] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:23,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:23,685 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:23,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:24,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-22 00:54:24,046 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:24,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-22 00:54:24,046 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:24,046 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:24,049 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:24,051 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:24,051 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:24,054 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:24,057 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:24,057 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:24,057 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:24,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:24,059 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:24,100 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:24,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:24,102 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:24,141 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:24,144 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8631cd0> has no local changes
2025-08-22 00:54:24,144 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:24,150 [ scc.git] DEBUG [detached HEAD 8b1d159] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:24,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:24,151 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:24,298 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:24,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-22 00:54:24,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:25,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-22 00:54:25,364 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:25,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-22 00:54:25,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:26,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-22 00:54:26,448 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:26,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:26,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:27,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:27,530 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:27,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-22 00:54:28,129 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:28,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:28,621 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:28,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-22 00:54:29,123 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:29,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-22 00:54:29,365 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-22 00:54:29,616 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:29,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-22 00:54:29,861 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:29,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-22 00:54:29,861 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:29,861 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:29,864 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:29,866 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:29,866 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:29,869 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:29,872 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:29,872 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-22 00:54:30,161 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-22 00:54:30,161 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-22 00:54:30,165 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:30,165 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:30,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:30,168 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-22 00:54:30,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:30,173 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-22 00:54:30,181 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:54:30,184 [ scc.git] DEBUG setup.py | 4 +-
2025-08-22 00:54:30,185 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-22 00:54:30,185 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-22 00:54:30,185 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-22 00:54:30,187 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:30,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:30,385 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:30,427 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:30,427 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:30,429 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:30,472 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:30,475 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c9111990> has no local changes
2025-08-22 00:54:30,475 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:30,482 [ scc.git] DEBUG [detached HEAD bdf8d1f] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:30,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:30,482 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:30,637 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:30,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-22 00:54:31,193 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:31,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-22 00:54:31,719 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:31,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-22 00:54:32,210 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:32,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-22 00:54:32,876 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:33,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:33,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:33,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-22 00:54:33,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:34,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:34,204 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-22 00:54:34,204 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:34,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-22 00:54:34,204 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:34,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:34,207 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:34,209 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:34,209 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:34,212 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:34,215 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:34,215 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-22 00:54:34,502 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-22 00:54:34,502 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-22 00:54:34,506 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:34,506 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:34,506 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:34,509 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-22 00:54:34,512 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:34,514 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-22 00:54:34,524 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG Auto-merging setup.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-22 00:54:34,524 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-22 00:54:34,524 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-22 00:54:34,527 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-22 00:54:34,532 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-22 00:54:34,534 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:34,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:34,747 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-22 00:54:34,751 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-22 00:54:34,754 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#511](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
--conflicts
2025-08-22 00:54:34,756 [ scc.config] DEBUG Found github.token
2025-08-22 00:54:34,756 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-22 00:54:34,756 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:34,797 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:34,797 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:34,800 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:34,841 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:34,845 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8668410> has no local changes
2025-08-22 00:54:34,845 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:34,851 [ scc.git] DEBUG [detached HEAD 581852a] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:34,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:34,852 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:35,000 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:35,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-22 00:54:35,632 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:35,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-22 00:54:36,158 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:36,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-22 00:54:36,766 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:37,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:37,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:37,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:37,861 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:38,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-22 00:54:38,356 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:38,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:38,560 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-22 00:54:38,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:39,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-22 00:54:39,341 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:39,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-22 00:54:39,857 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:40,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-22 00:54:40,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:40,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:40,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:41,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:41,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:41,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-22 00:54:42,068 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:42,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-22 00:54:42,571 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:42,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-22 00:54:43,068 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:43,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-22 00:54:43,579 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:43,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-22 00:54:44,120 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:44,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:44,581 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:44,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-22 00:54:45,223 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:45,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:45,440 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-22 00:54:45,440 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:45,440 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-22 00:54:45,440 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:45,440 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:45,443 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:45,446 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:45,446 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:45,449 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:45,452 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:45,452 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-22 00:54:45,748 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-22 00:54:45,749 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-22 00:54:45,753 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-22 00:54:46,044 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-22 00:54:46,044 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-22 00:54:46,048 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:46,048 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:46,048 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:46,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-22 00:54:46,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:46,057 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-22 00:54:46,070 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-22 00:54:46,074 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-22 00:54:46,075 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-22 00:54:46,076 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-22 00:54:46,077 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-22 00:54:46,077 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-22 00:54:46,077 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-22 00:54:46,077 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-22 00:54:46,078 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-22 00:54:46,078 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-22 00:54:46,078 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-22 00:54:46,078 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-22 00:54:46,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:46,279 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-22 00:54:46,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:46,286 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-22 00:54:46,296 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:54:46,299 [ scc.git] DEBUG docker | 1 +
2025-08-22 00:54:46,299 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-22 00:54:46,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:46,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:46,735 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:46,777 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:46,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:46,780 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:46,821 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:46,825 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c865fdd0> has no local changes
2025-08-22 00:54:46,825 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:46,833 [ scc.git] DEBUG [detached HEAD 48605aa] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:46,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:46,833 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:46,987 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:47,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-22 00:54:47,212 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:47,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-22 00:54:47,213 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:47,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:47,215 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:47,218 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:47,218 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:47,221 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:47,224 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:47,224 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:47,224 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:47,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:47,226 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:47,266 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:47,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:47,269 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:47,307 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:47,311 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8694610> has no local changes
2025-08-22 00:54:47,311 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:47,318 [ scc.git] DEBUG [detached HEAD b3a7307] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:47,318 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:47,318 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:47,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:47,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-22 00:54:47,688 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:47,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-22 00:54:47,688 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:47,688 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:47,690 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:47,693 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:47,693 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:47,696 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:47,704 [ scc.git] DEBUG Updating deab817..160d894
2025-08-22 00:54:47,940 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:48,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-22 00:54:48,428 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:48,428 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:48,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:48,430 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:48,472 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:48,472 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:48,474 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:48,516 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:48,519 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6cb65bb10> has no local changes
2025-08-22 00:54:48,519 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:48,525 [ scc.git] DEBUG [detached HEAD f76ee08] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:48,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:48,526 [ scc.git] INFO Overriding base-branch from master to main
2025-08-22 00:54:48,526 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:48,680 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:48,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-22 00:54:49,237 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:49,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-22 00:54:49,755 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:50,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-22 00:54:50,323 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:50,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-22 00:54:50,914 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:51,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:51,456 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:51,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:54:51,964 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:52,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-22 00:54:52,511 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:52,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-22 00:54:53,023 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:53,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-22 00:54:53,510 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:53,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-22 00:54:54,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:54,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:54,577 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:54,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-22 00:54:55,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:55,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:54:55,368 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-22 00:54:55,369 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:55,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-22 00:54:55,369 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:55,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:55,371 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-22 00:54:55,374 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:55,374 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-22 00:54:55,377 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-22 00:54:55,380 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:55,380 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-22 00:54:55,680 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-22 00:54:55,680 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-22 00:54:55,684 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:55,684 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:55,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:55,687 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-22 00:54:55,690 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:55,692 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-22 00:54:55,700 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-22 00:54:55,700 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-22 00:54:55,700 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-22 00:54:55,701 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-22 00:54:55,704 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-22 00:54:55,708 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-22 00:54:55,710 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:55,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:54:55,917 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-22 00:54:55,920 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-22 00:54:55,922 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#511](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-22 00:54:55,925 [ scc.config] DEBUG Found github.token
2025-08-22 00:54:55,925 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-22 00:54:55,925 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:55,966 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:55,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:55,968 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:56,009 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:56,013 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8634090> has no local changes
2025-08-22 00:54:56,013 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:56,019 [ scc.git] DEBUG [detached HEAD 6e63c37] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:56,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:56,019 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:56,169 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:56,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-22 00:54:56,384 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:56,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-22 00:54:56,385 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:56,385 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:56,387 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:56,389 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:56,389 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:56,392 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:56,395 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:56,396 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:56,396 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:56,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:56,398 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:56,439 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:56,439 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:56,441 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:56,481 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:56,485 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8677090> has no local changes
2025-08-22 00:54:56,485 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:56,492 [ scc.git] DEBUG [detached HEAD 12d3127] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:56,492 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:56,492 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:56,637 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:56,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-22 00:54:56,835 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:54:56,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-22 00:54:56,835 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:56,835 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:56,838 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:54:56,840 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:54:56,840 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:54:56,843 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:54:56,846 [ scc.git] DEBUG Already up to date.
2025-08-22 00:54:56,846 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:54:56,847 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:56,847 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:56,849 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:54:56,888 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:54:56,889 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:54:56,891 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:54:56,928 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:54:56,931 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c8f43190> has no local changes
2025-08-22 00:54:56,932 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:54:56,938 [ scc.git] DEBUG [detached HEAD c0bde76] merge master -Dorg -Ssuccess-only
2025-08-22 00:54:56,938 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:54:56,938 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:54:57,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:57,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-22 00:54:57,678 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:57,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-22 00:54:58,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:58,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-22 00:54:58,693 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:59,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-22 00:54:59,254 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:54:59,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:54:59,755 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:00,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-22 00:55:00,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:00,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:55:00,541 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-22 00:55:00,541 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:55:00,541 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-22 00:55:00,541 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:55:00,541 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:00,544 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-22 00:55:00,546 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:55:00,546 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-22 00:55:00,549 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-22 00:55:00,552 [ scc.git] DEBUG Already up to date.
2025-08-22 00:55:00,552 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-22 00:55:00,850 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-22 00:55:00,850 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-22 00:55:00,854 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:55:00,854 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:55:00,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:00,856 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-22 00:55:00,859 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:00,862 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-22 00:55:00,871 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-22 00:55:00,871 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-22 00:55:00,871 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-22 00:55:00,872 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-22 00:55:00,875 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-22 00:55:00,880 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-22 00:55:00,882 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:01,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:01,065 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-22 00:55:01,067 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-22 00:55:01,070 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#511](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-22 00:55:01,073 [ scc.config] DEBUG Found github.token
2025-08-22 00:55:01,073 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-22 00:55:01,073 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:55:01,114 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:55:01,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:01,116 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:55:01,157 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:55:01,161 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c91ea7d0> has no local changes
2025-08-22 00:55:01,161 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:55:01,168 [ scc.git] DEBUG [detached HEAD b68e988] merge master -Dorg -Ssuccess-only
2025-08-22 00:55:01,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:01,168 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-22 00:55:01,168 [ scc.repo] DEBUG ## PRs found:
2025-08-22 00:55:01,317 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:01,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-22 00:55:01,919 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:02,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-22 00:55:02,461 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:02,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-22 00:55:02,972 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:03,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-22 00:55:03,500 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:03,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:55:04,009 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:04,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-22 00:55:04,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:04,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-22 00:55:05,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:05,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:55:05,217 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-22 00:55:05,469 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:05,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-22 00:55:05,995 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:06,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-22 00:55:06,519 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:06,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-22 00:55:07,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:07,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-22 00:55:07,516 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:07,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-22 00:55:08,062 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:08,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-22 00:55:08,261 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-22 00:55:08,512 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:08,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-22 00:55:09,094 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:09,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-22 00:55:09,583 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:09,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-22 00:55:10,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:10,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-22 00:55:10,369 [ scc.repo] DEBUG ## Branches found:
2025-08-22 00:55:10,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-22 00:55:10,369 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:55:10,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:10,372 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-22 00:55:10,375 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-22 00:55:10,375 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-22 00:55:10,378 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-22 00:55:10,388 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-22 00:55:10,620 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:11,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-22 00:55:11,305 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:11,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-22 00:55:11,792 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-22 00:55:12,086 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-22 00:55:12,086 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-22 00:55:12,090 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-22 00:55:12,389 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-22 00:55:12,389 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-22 00:55:12,393 [ scc.git] DEBUG ## Unique users: []
2025-08-22 00:55:12,393 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:55:12,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:12,396 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-22 00:55:12,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:12,404 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-22 00:55:12,416 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-22 00:55:12,417 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-22 00:55:12,417 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-22 00:55:12,420 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-22 00:55:12,424 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-22 00:55:12,426 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:12,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:12,625 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-22 00:55:12,631 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-22 00:55:12,635 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#511](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-22 00:55:12,637 [ scc.config] DEBUG Found github.token
2025-08-22 00:55:12,637 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-22 00:55:12,637 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-22 00:55:12,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:12,644 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-22 00:55:12,654 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-22 00:55:12,658 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-22 00:55:12,658 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-22 00:55:12,877 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:13,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:13,083 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-22 00:55:13,125 [ scc.git] DEBUG Get sha1 of %s
2025-08-22 00:55:13,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-22 00:55:13,128 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:55:13,169 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:55:13,173 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c868c5d0> has no local changes
2025-08-22 00:55:13,173 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:55:13,180 [ scc.git] DEBUG [detached HEAD 39c1f40] merge master -Dorg -Ssuccess-only
2025-08-22 00:55:13,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:13,180 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-22 00:55:13,256 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-22 00:55:13,335 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:13,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:13,564 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-22 00:55:13,566 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-22 00:55:13,811 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:14,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:14,013 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-22 00:55:14,015 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-22 00:55:14,260 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:14,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:14,487 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-22 00:55:14,489 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-22 00:55:14,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:14,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:14,951 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-22 00:55:15,196 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:15,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:15,416 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-22 00:55:15,418 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-22 00:55:15,664 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:15,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:15,852 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-22 00:55:15,854 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-22 00:55:16,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:16,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:16,300 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-22 00:55:16,302 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-22 00:55:16,547 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:16,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:16,744 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-22 00:55:16,746 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-22 00:55:16,992 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:17,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:17,189 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-22 00:55:17,192 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-22 00:55:17,437 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:17,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:17,660 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-22 00:55:17,662 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-22 00:55:17,907 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:18,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:18,110 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-22 00:55:18,112 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-22 00:55:18,357 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:18,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:18,567 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-22 00:55:18,569 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-22 00:55:18,814 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:18,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:19,006 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-22 00:55:19,252 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:19,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:19,445 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-22 00:55:19,691 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:19,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:19,883 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-22 00:55:19,885 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-22 00:55:20,131 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:20,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:20,335 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-22 00:55:20,580 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:20,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:20,789 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-22 00:55:21,034 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:21,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:21,243 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-22 00:55:21,245 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-22 00:55:21,491 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:21,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:21,721 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-22 00:55:21,723 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-22 00:55:21,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:22,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:22,164 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-22 00:55:22,166 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-22 00:55:22,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:22,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:22,630 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-22 00:55:22,632 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-22 00:55:22,877 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-22 00:55:23,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-22 00:55:23,084 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-22 00:55:23,084 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-22 00:55:23,176 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe6c9054550> has local changes
2025-08-22 00:55:23,176 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 180 will-moore 'Register command' (status: failure)
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#511 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/511/)'
2025-08-22 00:55:23,189 [ scc.git] DEBUG [detached HEAD 838e6b4] merge master -Dorg -Ssuccess-only
2025-08-22 00:55:23,189 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-22 00:55:23,189 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-22 00:55:23,189 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,189 [ scc.merge] INFO
2025-08-22 00:55:23,189 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,189 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-22 00:55:23,189 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-22 00:55:23,189 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-22 00:55:23,189 [ scc.merge] INFO
2025-08-22 00:55:23,189 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-22 00:55:23,190 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,190 [ scc.merge] INFO
2025-08-22 00:55:23,190 [ scc.merge] INFO
2025-08-22 00:55:23,190 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-22 00:55:23,190 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-22 00:55:23,190 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,190 [ scc.merge] INFO
2025-08-22 00:55:23,190 [ scc.merge] INFO
2025-08-22 00:55:23,190 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-22 00:55:23,190 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,190 [ scc.merge] INFO
2025-08-22 00:55:23,190 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-22 00:55:23,190 [ scc.merge] INFO
2025-08-22 00:55:23,190 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-22 00:55:23,190 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 180 will-moore 'Register command' (status: failure)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-22 00:55:23,190 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-22 00:55:23,190 [ scc.merge] INFO Previously merged:
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-22 00:55:23,190 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-22 00:55:23,191 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-22 00:55:23,191 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-22 00:55:23,191 [ scc.merge] INFO Previously merged:
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-22 00:55:23,191 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,191 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,191 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-22 00:55:23,191 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,191 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-22 00:55:23,192 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-22 00:55:23,192 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-22 00:55:23,192 [ scc.merge] INFO Previously merged:
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-22 00:55:23,192 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-22 00:55:23,192 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,192 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-22 00:55:23,192 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:55:23,192 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-22 00:55:23,193 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-22 00:55:23,193 [ scc.merge] INFO Previously merged:
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-22 00:55:23,193 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-22 00:55:23,193 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-22 00:55:23,193 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-22 00:55:23,193 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-22 00:55:23,193 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-22 00:55:23,193 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,193 [ scc.merge] INFO
2025-08-22 00:55:23,193 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,193 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-22 00:55:23,194 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-22 00:55:23,194 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-22 00:55:23,194 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-22 00:55:23,194 [ scc.merge] INFO Updating deab817..160d894
2025-08-22 00:55:23,194 [ scc.merge] INFO Previously merged:
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-22 00:55:23,194 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-22 00:55:23,194 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,194 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-22 00:55:23,194 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-22 00:55:23,194 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO
2025-08-22 00:55:23,194 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-22 00:55:23,195 [ scc.merge] INFO Already up to date.
2025-08-22 00:55:23,195 [ scc.merge] INFO
2025-08-22 00:55:23,195 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-22 00:55:23,195 [ scc.merge] INFO
2025-08-22 00:55:23,195 [ scc.merge] INFO Repository: ome/scripts
2025-08-22 00:55:23,195 [ scc.merge] INFO Excluded PRs:
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-22 00:55:23,195 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-22 00:55:23,195 [ scc.merge] INFO Previously merged:
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-22 00:55:23,195 [ scc.merge] INFO
2025-08-22 00:55:23,195 [ scc.merge] INFO Merged PRs:
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-22 00:55:23,195 [ scc.merge] INFO
2025-08-22 00:55:23,195 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-22 00:55:23,195 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-22 00:55:23,195 [ scc.merge] INFO
2025-08-22 00:55:23,195 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-22 00:55:23,195 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-22 00:55:23,197 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,199 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-22 00:55:23,200 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-22 00:55:23,202 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-22 00:55:23,204 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-22 00:55:23,207 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-22 00:55:23,209 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-22 00:55:23,211 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-22 00:55:23,214 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-22 00:55:23,216 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,218 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,218 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-22 00:55:23,218 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,220 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-22 00:55:23,221 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-22 00:55:23,223 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-22 00:55:23,225 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-22 00:55:23,227 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-22 00:55:23,230 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-22 00:55:23,232 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-22 00:55:23,234 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-22 00:55:23,236 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-22 00:55:23,239 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-22 00:55:23,241 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-22 00:55:23,243 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-22 00:55:23,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-22 00:55:23,245 [ scc.git] DEBUG Calling 'git remote'
2025-08-22 00:55:23,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 227dee7] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD f10bac7] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-22 00:56:13,026 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-22 00:56:23,363 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-22 00:56:26,017 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-22 00:56:31,238 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-22 00:57:12,761 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
