Console Output
Skipping 207 KB..
Full Logjavascript and mocha'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:01,414 [ scc.git] DEBUG [detached HEAD 4fdc2dd] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:01,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:01,415 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:01,560 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:01,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-08-23 00:41:02,111 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:02,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-08-23 00:41:02,610 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:02,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-23 00:41:03,163 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:03,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:03,697 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:03,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-23 00:41:04,173 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:04,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:04,390 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:41:04,642 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:04,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-23 00:41:05,158 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:05,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-23 00:41:05,698 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:05,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-23 00:41:06,243 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:06,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:06,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:06,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-23 00:41:07,237 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:07,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:07,479 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-23 00:41:07,479 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:07,479 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-23 00:41:07,479 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:07,480 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:07,482 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:07,485 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:07,485 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:07,488 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:07,491 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:07,492 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-23 00:41:07,780 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-23 00:41:07,780 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-23 00:41:07,785 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-23 00:41:08,062 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-23 00:41:08,062 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-23 00:41:08,066 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:08,066 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:08,066 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:08,069 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-23 00:41:08,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:08,075 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-23 00:41:08,084 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:08,088 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-23 00:41:08,088 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-23 00:41:08,088 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-23 00:41:08,088 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-23 00:41:08,088 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-23 00:41:08,088 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-23 00:41:08,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:08,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:08,312 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-23 00:41:08,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:08,319 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-23 00:41:08,328 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:08,331 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-23 00:41:08,331 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-23 00:41:08,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:08,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:08,771 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:08,814 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:08,814 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:08,817 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:08,859 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:08,864 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1f787a90> has no local changes
2025-08-23 00:41:08,864 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:08,872 [ scc.git] DEBUG [detached HEAD 2a46135] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:08,872 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:08,872 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:09,024 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:09,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-23 00:41:09,600 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:09,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-23 00:41:10,113 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:10,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-23 00:41:10,715 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:11,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-23 00:41:11,280 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:11,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:11,793 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:12,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-23 00:41:12,378 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:12,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:12,590 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-23 00:41:12,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:13,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-23 00:41:13,332 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:13,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-23 00:41:13,850 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:14,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-23 00:41:14,395 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:14,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:14,913 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:15,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-23 00:41:15,399 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:15,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:15,620 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-23 00:41:15,620 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:15,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-23 00:41:15,620 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:15,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:15,623 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:15,625 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:15,625 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:15,629 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:15,636 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-23 00:41:15,872 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:16,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-23 00:41:16,315 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-23 00:41:16,609 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-23 00:41:16,609 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-23 00:41:16,614 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-23 00:41:16,892 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-23 00:41:16,892 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-23 00:41:16,897 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:16,897 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:16,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:16,899 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-23 00:41:16,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:16,906 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-23 00:41:16,920 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-23 00:41:16,920 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-23 00:41:16,920 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-23 00:41:16,920 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-23 00:41:16,920 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-23 00:41:16,921 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-23 00:41:16,923 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-23 00:41:16,928 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-23 00:41:16,931 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:17,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:17,131 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-23 00:41:17,136 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-23 00:41:17,139 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-23 00:41:17,141 [ scc.config] DEBUG Found github.token
2025-08-23 00:41:17,141 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-23 00:41:17,141 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-23 00:41:17,146 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:17,148 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-23 00:41:17,163 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-23 00:41:17,164 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-23 00:41:17,164 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-23 00:41:17,164 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-23 00:41:17,164 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-23 00:41:17,167 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-23 00:41:17,172 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-23 00:41:17,383 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:17,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:17,613 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-23 00:41:17,618 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-23 00:41:17,621 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-23 00:41:17,623 [ scc.config] DEBUG Found github.token
2025-08-23 00:41:17,623 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-23 00:41:17,623 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:17,667 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:17,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:17,669 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:17,711 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:17,715 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d011d50> has no local changes
2025-08-23 00:41:17,715 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:17,722 [ scc.git] DEBUG [detached HEAD 96f74a6] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:17,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:17,723 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:17,865 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:18,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-23 00:41:18,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:18,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-23 00:41:19,027 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:19,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-23 00:41:19,556 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:19,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:20,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:20,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:41:20,636 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:20,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-23 00:41:21,114 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:21,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:21,327 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:41:21,580 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:21,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-23 00:41:21,838 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-23 00:41:22,090 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:22,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-23 00:41:22,663 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:22,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:23,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:23,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:41:23,766 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:24,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-23 00:41:24,300 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:24,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:24,511 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-23 00:41:24,762 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:25,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-23 00:41:25,038 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-23 00:41:25,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:25,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-23 00:41:25,906 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:26,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:26,481 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:26,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:41:27,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:27,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-23 00:41:27,562 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:27,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:27,874 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-23 00:41:28,127 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:28,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-23 00:41:28,615 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:28,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-23 00:41:29,139 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:29,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-23 00:41:29,635 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:29,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-23 00:41:30,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:30,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-23 00:41:30,670 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:30,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-23 00:41:31,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:31,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-23 00:41:31,445 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:31,445 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-23 00:41:31,445 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:31,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:31,448 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:31,450 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:31,451 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:31,454 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:31,457 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:31,457 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-23 00:41:31,748 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-23 00:41:31,748 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-23 00:41:31,753 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-23 00:41:32,029 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-23 00:41:32,029 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-23 00:41:32,034 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-23 00:41:32,308 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-23 00:41:32,308 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-23 00:41:32,313 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:32,313 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:32,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:32,316 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-23 00:41:32,320 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:32,322 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-23 00:41:32,330 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:32,334 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-23 00:41:32,334 [ scc.git] DEBUG package.json | 2 +-
2025-08-23 00:41:32,334 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-23 00:41:32,337 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:32,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:32,566 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-23 00:41:32,569 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:32,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-23 00:41:32,583 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-23 00:41:32,583 [ scc.git] DEBUG Auto-merging package.json
2025-08-23 00:41:32,584 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:32,588 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-23 00:41:32,588 [ scc.git] DEBUG package.json | 2 +-
2025-08-23 00:41:32,588 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-23 00:41:32,818 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:33,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:33,012 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-23 00:41:33,016 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:33,018 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-23 00:41:33,028 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:33,031 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-23 00:41:33,031 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-23 00:41:33,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:33,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:33,472 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:33,516 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:33,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:33,519 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:33,560 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:33,565 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d0d6d10> has no local changes
2025-08-23 00:41:33,565 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:33,572 [ scc.git] DEBUG [detached HEAD 17e6117] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:33,572 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:33,572 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:33,724 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:33,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-23 00:41:33,942 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:33,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-23 00:41:33,942 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:33,942 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:33,946 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:33,949 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:33,949 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:33,952 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:33,955 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:33,955 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:33,955 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:33,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:33,958 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:33,999 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:33,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:34,002 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:34,041 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:34,045 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d2c8ad0> has no local changes
2025-08-23 00:41:34,045 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:34,051 [ scc.git] DEBUG [detached HEAD 65be25d] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:34,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:34,052 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:34,195 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:34,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-23 00:41:34,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:35,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-23 00:41:35,310 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:35,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-23 00:41:35,803 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:36,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-23 00:41:36,394 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:36,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:36,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:37,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:41:37,503 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:37,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-23 00:41:38,073 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:38,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:38,561 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:38,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-23 00:41:39,063 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:39,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-23 00:41:39,293 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-23 00:41:39,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:39,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-23 00:41:39,809 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:39,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-23 00:41:39,809 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:39,809 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:39,812 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:39,815 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:39,815 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:39,818 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:39,821 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:39,821 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-23 00:41:40,105 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-23 00:41:40,105 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-23 00:41:40,109 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:40,109 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:40,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:40,112 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-23 00:41:40,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:40,117 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-23 00:41:40,126 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:40,129 [ scc.git] DEBUG setup.py | 4 +-
2025-08-23 00:41:40,129 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-23 00:41:40,129 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-23 00:41:40,129 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-23 00:41:40,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:40,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:40,340 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:40,383 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:40,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:40,385 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:40,426 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:40,429 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d055690> has no local changes
2025-08-23 00:41:40,430 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:40,436 [ scc.git] DEBUG [detached HEAD 8f32f54] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:40,437 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:40,437 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:40,592 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:40,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-23 00:41:41,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:41,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-23 00:41:41,682 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:41,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-23 00:41:42,167 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:42,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-23 00:41:42,749 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:43,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:43,257 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:43,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-23 00:41:43,922 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:44,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:44,144 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-23 00:41:44,144 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:44,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-23 00:41:44,144 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:44,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:44,147 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:44,149 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:44,149 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:44,152 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:44,155 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:44,155 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-23 00:41:44,440 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-23 00:41:44,440 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-23 00:41:44,445 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:44,445 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:44,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:44,447 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-23 00:41:44,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:44,453 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-23 00:41:44,462 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG Auto-merging setup.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-23 00:41:44,462 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-23 00:41:44,462 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-23 00:41:44,466 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-23 00:41:44,470 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-23 00:41:44,473 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:44,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:44,682 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-23 00:41:44,685 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-23 00:41:44,689 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/urls.py
--conflicts
2025-08-23 00:41:44,691 [ scc.config] DEBUG Found github.token
2025-08-23 00:41:44,691 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-23 00:41:44,691 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:44,733 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:44,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:44,735 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:44,774 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:44,778 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d0b82d0> has no local changes
2025-08-23 00:41:44,778 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:44,785 [ scc.git] DEBUG [detached HEAD 4cd1921] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:44,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:44,785 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:44,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:45,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-23 00:41:45,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:45,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-23 00:41:46,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:46,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-23 00:41:46,588 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:46,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:47,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:47,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:41:47,605 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:47,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-23 00:41:48,121 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:48,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:48,318 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-23 00:41:48,570 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:48,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-23 00:41:49,120 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:49,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-23 00:41:49,637 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:49,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-23 00:41:50,225 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:50,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:50,740 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:51,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:41:51,263 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:51,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-23 00:41:51,809 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:52,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-23 00:41:52,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:52,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-23 00:41:52,804 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:53,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-23 00:41:53,339 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:53,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-23 00:41:53,865 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:54,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:41:54,407 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:54,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-23 00:41:54,897 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:55,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:41:55,097 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-23 00:41:55,097 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:55,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-23 00:41:55,097 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:55,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:55,101 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:55,103 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:55,103 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:55,106 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:55,109 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:55,109 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-23 00:41:55,404 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-23 00:41:55,404 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-23 00:41:55,408 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-23 00:41:55,695 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-23 00:41:55,695 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-23 00:41:55,700 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:55,700 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:55,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:55,703 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-23 00:41:55,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:55,710 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-23 00:41:55,733 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-23 00:41:55,737 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-23 00:41:55,738 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-23 00:41:55,740 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-23 00:41:55,740 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-23 00:41:55,740 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-23 00:41:55,740 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-23 00:41:55,741 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-23 00:41:55,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:55,950 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-23 00:41:55,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:55,957 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-23 00:41:55,967 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:41:55,970 [ scc.git] DEBUG docker | 1 +
2025-08-23 00:41:55,970 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-23 00:41:56,202 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:56,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:41:56,407 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:56,449 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:56,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:56,452 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:56,493 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:56,497 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1c6e6150> has no local changes
2025-08-23 00:41:56,497 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:56,503 [ scc.git] DEBUG [detached HEAD be74d43] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:56,504 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:56,504 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:56,659 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:56,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-23 00:41:56,913 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:56,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-23 00:41:56,913 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:56,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:56,916 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:56,919 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:56,919 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:56,922 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:56,925 [ scc.git] DEBUG Already up to date.
2025-08-23 00:41:56,925 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:56,925 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:56,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:56,928 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:56,969 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:56,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:56,971 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:57,010 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:57,014 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1c73a3d0> has no local changes
2025-08-23 00:41:57,014 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:57,020 [ scc.git] DEBUG [detached HEAD 390365f] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:57,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:57,021 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:57,165 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:57,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-23 00:41:57,371 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:41:57,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-23 00:41:57,372 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:57,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:57,374 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:41:57,377 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:41:57,377 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:41:57,380 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:41:57,388 [ scc.git] DEBUG Updating deab817..160d894
2025-08-23 00:41:57,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:58,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-23 00:41:58,114 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:41:58,114 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:58,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:58,117 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:41:58,163 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:41:58,163 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:41:58,166 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:41:58,207 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:41:58,211 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1c72d990> has no local changes
2025-08-23 00:41:58,211 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:41:58,217 [ scc.git] DEBUG [detached HEAD effb98b] merge master -Dorg -Ssuccess-only
2025-08-23 00:41:58,218 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:41:58,218 [ scc.git] INFO Overriding base-branch from master to main
2025-08-23 00:41:58,218 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:41:58,366 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:58,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-23 00:41:58,954 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:59,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-23 00:41:59,462 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:41:59,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-23 00:41:59,952 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:00,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-23 00:42:00,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:00,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:42:01,084 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:01,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:42:01,600 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:01,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-23 00:42:02,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:02,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-23 00:42:02,616 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:02,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-23 00:42:03,127 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:03,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-23 00:42:03,708 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:03,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:42:04,220 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:04,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-23 00:42:04,836 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:05,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:42:05,046 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-23 00:42:05,046 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:42:05,047 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-23 00:42:05,047 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:05,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:05,049 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-23 00:42:05,052 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:42:05,052 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-23 00:42:05,055 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-23 00:42:05,058 [ scc.git] DEBUG Already up to date.
2025-08-23 00:42:05,058 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-23 00:42:05,350 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-23 00:42:05,350 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-23 00:42:05,355 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:42:05,355 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:05,355 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:05,357 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-23 00:42:05,360 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:05,362 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-23 00:42:05,370 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-23 00:42:05,370 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-23 00:42:05,371 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-23 00:42:05,371 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-23 00:42:05,374 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-23 00:42:05,378 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-23 00:42:05,381 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:05,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:05,580 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-23 00:42:05,583 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-23 00:42:05,586 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-23 00:42:05,588 [ scc.config] DEBUG Found github.token
2025-08-23 00:42:05,588 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-23 00:42:05,588 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:42:05,630 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:05,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:05,633 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:42:05,674 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:42:05,678 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1c6ee810> has no local changes
2025-08-23 00:42:05,678 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:42:05,684 [ scc.git] DEBUG [detached HEAD 0f1a034] merge master -Dorg -Ssuccess-only
2025-08-23 00:42:05,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:05,685 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:42:05,832 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:06,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-23 00:42:06,060 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:42:06,060 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-23 00:42:06,060 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:06,060 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:06,063 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:42:06,065 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:42:06,065 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:42:06,068 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:42:06,071 [ scc.git] DEBUG Already up to date.
2025-08-23 00:42:06,071 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:42:06,071 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:06,071 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:06,073 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:42:06,113 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:06,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:06,116 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:42:06,156 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:42:06,160 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1c7571d0> has no local changes
2025-08-23 00:42:06,160 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:42:06,166 [ scc.git] DEBUG [detached HEAD bf41b4c] merge master -Dorg -Ssuccess-only
2025-08-23 00:42:06,166 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:06,166 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:42:06,312 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:06,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-23 00:42:06,519 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:42:06,519 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-23 00:42:06,519 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:06,519 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:06,521 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:42:06,523 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:42:06,524 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:42:06,526 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:42:06,530 [ scc.git] DEBUG Already up to date.
2025-08-23 00:42:06,530 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:42:06,530 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:06,530 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:06,532 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:42:06,573 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:06,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:06,575 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:42:06,616 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:42:06,620 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d09ce90> has no local changes
2025-08-23 00:42:06,620 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:42:06,626 [ scc.git] DEBUG [detached HEAD 7dc05f9] merge master -Dorg -Ssuccess-only
2025-08-23 00:42:06,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:06,627 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:42:06,771 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:07,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-23 00:42:07,294 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:07,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-23 00:42:07,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:08,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-23 00:42:08,358 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:08,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-23 00:42:08,929 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:09,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:42:09,399 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:09,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-23 00:42:09,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:10,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:42:10,184 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-23 00:42:10,184 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:42:10,184 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-23 00:42:10,184 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:10,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:10,187 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-23 00:42:10,190 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:42:10,190 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-23 00:42:10,193 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-23 00:42:10,196 [ scc.git] DEBUG Already up to date.
2025-08-23 00:42:10,196 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-23 00:42:10,487 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-23 00:42:10,488 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-23 00:42:10,493 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:42:10,493 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:10,493 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:10,495 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-23 00:42:10,498 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:10,500 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-23 00:42:10,509 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-23 00:42:10,509 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-23 00:42:10,509 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-23 00:42:10,510 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-23 00:42:10,513 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-23 00:42:10,518 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-23 00:42:10,520 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:10,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:10,713 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-23 00:42:10,716 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-23 00:42:10,718 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-23 00:42:10,721 [ scc.config] DEBUG Found github.token
2025-08-23 00:42:10,721 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-23 00:42:10,721 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:42:10,762 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:10,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:10,764 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:42:10,805 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:42:10,809 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1c742790> has no local changes
2025-08-23 00:42:10,809 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:42:10,816 [ scc.git] DEBUG [detached HEAD 59ef620] merge master -Dorg -Ssuccess-only
2025-08-23 00:42:10,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:10,817 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-23 00:42:10,817 [ scc.repo] DEBUG ## PRs found:
2025-08-23 00:42:10,965 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:11,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-23 00:42:11,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:11,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-23 00:42:12,038 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:12,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-23 00:42:12,559 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:12,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-23 00:42:13,024 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:13,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:42:13,558 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:13,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-23 00:42:14,074 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:14,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-23 00:42:14,558 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:14,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:42:14,759 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-23 00:42:15,010 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:15,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-23 00:42:15,498 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:15,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-23 00:42:15,987 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:16,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-23 00:42:16,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:16,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-23 00:42:16,975 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:17,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-23 00:42:17,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:17,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-23 00:42:17,663 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-23 00:42:17,915 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:18,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-23 00:42:18,437 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:18,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-23 00:42:18,978 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:19,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-23 00:42:19,478 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:19,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-23 00:42:19,778 [ scc.repo] DEBUG ## Branches found:
2025-08-23 00:42:19,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-23 00:42:19,778 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:19,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:19,781 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-23 00:42:19,783 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-23 00:42:19,783 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-23 00:42:19,787 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-23 00:42:19,798 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-23 00:42:20,029 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:20,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-23 00:42:20,711 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:21,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-23 00:42:21,172 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-23 00:42:21,485 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-23 00:42:21,485 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-23 00:42:21,490 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-23 00:42:21,778 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-23 00:42:21,778 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-23 00:42:21,783 [ scc.git] DEBUG ## Unique users: []
2025-08-23 00:42:21,783 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:21,783 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:21,785 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-23 00:42:21,791 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:21,794 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-23 00:42:21,805 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-23 00:42:21,805 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-23 00:42:21,806 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-23 00:42:21,808 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-23 00:42:21,813 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-23 00:42:21,816 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:22,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:22,026 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-23 00:42:22,031 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-23 00:42:22,035 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-23 00:42:22,037 [ scc.config] DEBUG Found github.token
2025-08-23 00:42:22,037 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-23 00:42:22,037 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-23 00:42:22,042 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:22,044 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-23 00:42:22,054 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-23 00:42:22,057 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-23 00:42:22,058 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-23 00:42:22,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:22,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:22,482 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-23 00:42:22,524 [ scc.git] DEBUG Get sha1 of %s
2025-08-23 00:42:22,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-23 00:42:22,526 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:42:22,568 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:42:22,572 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d2e0890> has no local changes
2025-08-23 00:42:22,572 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:42:22,579 [ scc.git] DEBUG [detached HEAD 4d95a47] merge master -Dorg -Ssuccess-only
2025-08-23 00:42:22,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:22,579 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-23 00:42:22,658 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-23 00:42:22,734 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:22,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:22,941 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-23 00:42:22,943 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-23 00:42:23,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:23,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:23,391 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-23 00:42:23,394 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-23 00:42:23,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:23,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:23,834 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-23 00:42:23,836 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-23 00:42:24,082 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:24,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:24,274 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-23 00:42:24,519 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:24,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:24,713 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-23 00:42:24,715 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-23 00:42:24,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:25,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:25,168 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-23 00:42:25,170 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-23 00:42:25,415 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:25,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:25,634 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-23 00:42:25,636 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-23 00:42:25,881 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:26,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:26,075 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-23 00:42:26,077 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-23 00:42:26,322 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:26,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:26,530 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-23 00:42:26,532 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-23 00:42:26,777 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:26,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:26,981 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-23 00:42:26,983 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-23 00:42:27,228 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:27,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:27,424 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-23 00:42:27,426 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-23 00:42:27,671 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:27,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:27,870 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-23 00:42:27,872 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-23 00:42:28,117 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:28,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:28,352 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-23 00:42:28,598 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:28,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:28,810 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-23 00:42:29,056 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:29,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:29,251 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-23 00:42:29,253 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-23 00:42:29,498 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:29,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:29,704 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-23 00:42:29,949 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:30,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:30,146 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-23 00:42:30,391 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:30,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:30,592 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-23 00:42:30,594 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-23 00:42:30,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:31,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:31,032 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-23 00:42:31,034 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-23 00:42:31,279 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:31,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:31,469 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-23 00:42:31,471 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-23 00:42:31,716 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:31,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:31,914 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-23 00:42:31,916 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-23 00:42:32,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-23 00:42:32,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-23 00:42:32,409 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-23 00:42:32,409 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-23 00:42:32,501 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2f1d1b0410> has local changes
2025-08-23 00:42:32,501 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 180 will-moore 'Register command' (status: failure)
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/512/)'
2025-08-23 00:42:32,514 [ scc.git] DEBUG [detached HEAD fe25c0d] merge master -Dorg -Ssuccess-only
2025-08-23 00:42:32,514 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-23 00:42:32,514 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-23 00:42:32,514 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,514 [ scc.merge] INFO
2025-08-23 00:42:32,514 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-23 00:42:32,515 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-23 00:42:32,515 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-23 00:42:32,515 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-23 00:42:32,515 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-23 00:42:32,515 [ scc.merge] INFO
2025-08-23 00:42:32,515 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-23 00:42:32,515 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 180 will-moore 'Register command' (status: failure)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-23 00:42:32,515 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-23 00:42:32,515 [ scc.merge] INFO Previously merged:
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-23 00:42:32,515 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-23 00:42:32,516 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-23 00:42:32,516 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-23 00:42:32,516 [ scc.merge] INFO Previously merged:
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-23 00:42:32,516 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,516 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-23 00:42:32,516 [ scc.merge] INFO
2025-08-23 00:42:32,516 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-23 00:42:32,517 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-23 00:42:32,517 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-23 00:42:32,517 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-23 00:42:32,517 [ scc.merge] INFO Previously merged:
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-23 00:42:32,517 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-23 00:42:32,517 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,517 [ scc.merge] INFO
2025-08-23 00:42:32,517 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-23 00:42:32,517 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-23 00:42:32,518 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-23 00:42:32,518 [ scc.merge] INFO Previously merged:
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-23 00:42:32,518 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-23 00:42:32,518 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-23 00:42:32,518 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-23 00:42:32,518 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-23 00:42:32,518 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-23 00:42:32,518 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,518 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-23 00:42:32,518 [ scc.merge] INFO
2025-08-23 00:42:32,518 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-23 00:42:32,519 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-23 00:42:32,519 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-23 00:42:32,519 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-23 00:42:32,519 [ scc.merge] INFO Updating deab817..160d894
2025-08-23 00:42:32,519 [ scc.merge] INFO Previously merged:
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-23 00:42:32,519 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-23 00:42:32,519 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-23 00:42:32,519 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-23 00:42:32,519 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-23 00:42:32,519 [ scc.merge] INFO Already up to date.
2025-08-23 00:42:32,519 [ scc.merge] INFO
2025-08-23 00:42:32,519 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,519 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-23 00:42:32,520 [ scc.merge] INFO
2025-08-23 00:42:32,520 [ scc.merge] INFO Repository: ome/scripts
2025-08-23 00:42:32,520 [ scc.merge] INFO Excluded PRs:
2025-08-23 00:42:32,520 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-23 00:42:32,520 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-23 00:42:32,520 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-23 00:42:32,520 [ scc.merge] INFO Previously merged:
2025-08-23 00:42:32,520 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-23 00:42:32,520 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-23 00:42:32,520 [ scc.merge] INFO
2025-08-23 00:42:32,520 [ scc.merge] INFO Merged PRs:
2025-08-23 00:42:32,520 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-23 00:42:32,520 [ scc.merge] INFO
2025-08-23 00:42:32,520 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-23 00:42:32,520 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-23 00:42:32,520 [ scc.merge] INFO
2025-08-23 00:42:32,520 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-23 00:42:32,520 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-23 00:42:32,522 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,524 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,524 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-23 00:42:32,524 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-23 00:42:32,527 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-23 00:42:32,529 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,531 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,531 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-23 00:42:32,531 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-23 00:42:32,534 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,536 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,536 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-23 00:42:32,536 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-23 00:42:32,538 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,541 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,541 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-23 00:42:32,541 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-23 00:42:32,543 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,545 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,545 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-23 00:42:32,545 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,548 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,548 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-23 00:42:32,548 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-23 00:42:32,550 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,552 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,552 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-23 00:42:32,552 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-23 00:42:32,555 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-23 00:42:32,557 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-23 00:42:32,559 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,561 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,561 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-23 00:42:32,562 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,564 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,564 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-23 00:42:32,564 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-23 00:42:32,566 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,568 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-23 00:42:32,569 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-23 00:42:32,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-23 00:42:32,571 [ scc.git] DEBUG Calling 'git remote'
2025-08-23 00:42:32,573 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 0525697] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD ac4055e] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-23 00:43:22,118 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-23 00:43:32,207 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-23 00:43:34,916 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-23 00:43:40,227 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-23 00:44:21,519 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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