Console Output
Skipping 219 KB..
Full Log25-08-27 01:01:55,419 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:55,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:01:55,638 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-27 01:01:55,638 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:01:55,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-27 01:01:55,639 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:01:55,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:01:55,642 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:01:55,644 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:01:55,644 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:01:55,647 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:01:55,650 [ scc.git] DEBUG Already up to date.
2025-08-27 01:01:55,650 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-27 01:01:56,507 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-27 01:01:56,507 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-27 01:01:56,511 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-27 01:01:56,788 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-27 01:01:56,788 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-27 01:01:56,793 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:01:56,793 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:01:56,793 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:01:56,795 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-27 01:01:56,799 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:01:56,802 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-27 01:01:56,864 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:01:56,867 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-27 01:01:56,867 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-27 01:01:56,867 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-27 01:01:56,867 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-27 01:01:56,867 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-27 01:01:56,867 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-27 01:01:56,870 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:57,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:01:57,054 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-27 01:01:57,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:01:57,060 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-27 01:01:57,069 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:01:57,072 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-27 01:01:57,072 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-27 01:01:57,306 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:57,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:01:57,507 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:01:57,550 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:01:57,550 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:01:57,553 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:01:57,595 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:01:57,599 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde6e0d90> has no local changes
2025-08-27 01:01:57,599 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:01:57,606 [ scc.git] DEBUG [detached HEAD 3280b73] merge master -Dorg -Ssuccess-only
2025-08-27 01:01:57,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:01:57,607 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:01:57,760 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:58,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-27 01:01:58,358 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:58,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-27 01:01:58,918 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:59,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-27 01:01:59,452 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:01:59,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-27 01:02:00,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:00,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:00,539 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:00,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-27 01:02:01,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:01,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:01,326 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-27 01:02:01,578 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:01,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-27 01:02:02,120 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:02,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-27 01:02:02,697 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:03,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-27 01:02:03,291 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:03,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:03,789 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:04,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-27 01:02:04,262 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:04,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:04,491 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-27 01:02:04,491 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:04,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-27 01:02:04,491 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:04,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:04,494 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:04,497 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:04,497 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:04,500 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:04,508 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-27 01:02:04,743 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:05,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-27 01:02:05,216 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-27 01:02:05,946 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-27 01:02:05,946 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-27 01:02:05,950 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-27 01:02:06,338 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-27 01:02:06,339 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-27 01:02:06,343 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:06,343 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:06,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:06,346 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-27 01:02:06,351 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:06,353 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-27 01:02:06,427 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-27 01:02:06,427 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-27 01:02:06,427 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-27 01:02:06,427 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-27 01:02:06,427 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-27 01:02:06,427 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-27 01:02:06,430 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-27 01:02:06,435 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-27 01:02:06,437 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:06,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:06,640 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-27 01:02:06,644 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-27 01:02:06,647 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#516](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-27 01:02:06,650 [ scc.config] DEBUG Found github.token
2025-08-27 01:02:06,650 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-27 01:02:06,650 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-27 01:02:06,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:06,657 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-27 01:02:06,694 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-27 01:02:06,694 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-27 01:02:06,694 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-27 01:02:06,695 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-27 01:02:06,695 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-27 01:02:06,698 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-27 01:02:06,703 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-27 01:02:06,892 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:07,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:07,097 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-27 01:02:07,101 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-27 01:02:07,104 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#516](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-27 01:02:07,107 [ scc.config] DEBUG Found github.token
2025-08-27 01:02:07,107 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-27 01:02:07,107 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:07,149 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:07,149 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:07,151 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:07,193 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:07,197 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde758710> has no local changes
2025-08-27 01:02:07,197 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:07,204 [ scc.git] DEBUG [detached HEAD 78e6d60] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:07,205 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:07,205 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:07,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:07,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-27 01:02:08,004 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:08,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-27 01:02:08,535 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:08,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-27 01:02:09,083 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:09,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:09,696 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:09,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:10,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:10,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-27 01:02:10,780 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:11,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:11,009 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:02:11,261 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:11,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-27 01:02:11,549 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-27 01:02:11,802 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:12,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-27 01:02:12,468 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:12,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:13,031 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:13,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:13,552 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:13,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-27 01:02:14,168 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:14,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:14,438 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-27 01:02:14,690 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:14,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-27 01:02:14,962 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-27 01:02:15,214 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:15,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-27 01:02:15,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:16,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:16,358 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:16,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:16,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:17,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-27 01:02:17,539 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:17,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:17,763 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-27 01:02:18,015 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:18,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-27 01:02:18,539 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:18,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-27 01:02:19,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:19,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-27 01:02:19,538 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:19,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-27 01:02:20,030 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:20,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-27 01:02:20,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:20,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-27 01:02:21,057 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:21,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-27 01:02:21,321 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:21,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-27 01:02:21,321 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:21,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:21,324 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:21,326 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:21,326 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:21,330 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:21,333 [ scc.git] DEBUG Already up to date.
2025-08-27 01:02:21,333 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-27 01:02:21,622 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-27 01:02:21,622 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-27 01:02:21,626 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-27 01:02:21,901 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-27 01:02:21,901 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-27 01:02:21,905 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-27 01:02:22,327 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-27 01:02:22,327 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-27 01:02:22,331 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:22,331 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:22,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:22,334 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-27 01:02:22,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:22,351 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-27 01:02:22,419 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:02:22,423 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-27 01:02:22,423 [ scc.git] DEBUG package.json | 2 +-
2025-08-27 01:02:22,423 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-27 01:02:22,426 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:22,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:22,624 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-27 01:02:22,674 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:22,676 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-27 01:02:22,882 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-27 01:02:22,882 [ scc.git] DEBUG Auto-merging package.json
2025-08-27 01:02:22,883 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:02:22,886 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-27 01:02:22,886 [ scc.git] DEBUG package.json | 2 +-
2025-08-27 01:02:22,886 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-27 01:02:22,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:23,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:23,115 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-27 01:02:23,118 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:23,120 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-27 01:02:23,129 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:02:23,132 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-27 01:02:23,132 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-27 01:02:23,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:23,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:23,600 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:23,642 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:23,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:23,645 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:23,685 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:23,690 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde64f6d0> has no local changes
2025-08-27 01:02:23,690 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:23,697 [ scc.git] DEBUG [detached HEAD 6a438fd] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:23,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:23,697 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:23,853 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:24,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-27 01:02:24,110 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:24,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-27 01:02:24,111 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:24,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:24,113 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:24,115 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:24,115 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:24,118 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:24,121 [ scc.git] DEBUG Already up to date.
2025-08-27 01:02:24,121 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:24,121 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:24,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:24,124 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:24,164 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:24,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:24,167 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:24,204 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:24,207 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde749650> has no local changes
2025-08-27 01:02:24,207 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:24,213 [ scc.git] DEBUG [detached HEAD d663421] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:24,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:24,214 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:24,363 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:24,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-27 01:02:24,958 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:25,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-27 01:02:25,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:25,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-27 01:02:25,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:26,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-27 01:02:26,599 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:26,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:27,159 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:27,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:27,679 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:27,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-27 01:02:28,191 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:28,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:28,659 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:28,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-27 01:02:29,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:29,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-27 01:02:29,484 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-27 01:02:29,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:30,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-27 01:02:30,007 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:30,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-27 01:02:30,008 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:30,008 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:30,010 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:30,013 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:30,013 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:30,016 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:30,019 [ scc.git] DEBUG Already up to date.
2025-08-27 01:02:30,019 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-27 01:02:30,935 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-27 01:02:30,935 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-27 01:02:30,939 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:30,939 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:30,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:30,942 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-27 01:02:30,945 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:30,947 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-27 01:02:30,957 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:02:30,960 [ scc.git] DEBUG setup.py | 4 +-
2025-08-27 01:02:30,960 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-27 01:02:30,960 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-27 01:02:30,960 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-27 01:02:30,963 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:31,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:31,162 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:31,205 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:31,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:31,207 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:31,248 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:31,252 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde6e1b90> has no local changes
2025-08-27 01:02:31,252 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:31,259 [ scc.git] DEBUG [detached HEAD 339ad63] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:31,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:31,259 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:31,415 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:31,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-27 01:02:31,955 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:32,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-27 01:02:32,504 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:32,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-27 01:02:32,984 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:33,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-27 01:02:33,654 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:33,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:34,173 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:34,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-27 01:02:34,796 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:35,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:35,011 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-27 01:02:35,011 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:35,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-27 01:02:35,011 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:35,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:35,014 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:35,017 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:35,017 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:35,020 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:35,023 [ scc.git] DEBUG Already up to date.
2025-08-27 01:02:35,023 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-27 01:02:35,607 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-27 01:02:35,608 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-27 01:02:35,612 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:35,612 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:35,612 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:35,615 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-27 01:02:35,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:35,620 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-27 01:02:35,750 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG Auto-merging setup.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-27 01:02:35,750 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-27 01:02:35,751 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-27 01:02:35,753 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-27 01:02:35,758 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-27 01:02:35,761 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:35,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:35,951 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-27 01:02:35,954 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-27 01:02:35,957 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#516](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
- omero_signup/signup_settings.py
--conflicts
2025-08-27 01:02:35,959 [ scc.config] DEBUG Found github.token
2025-08-27 01:02:35,959 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-27 01:02:35,959 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:36,000 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:36,000 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:36,003 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:36,044 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:36,048 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde749950> has no local changes
2025-08-27 01:02:36,048 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:36,054 [ scc.git] DEBUG [detached HEAD fbad111] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:36,054 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:36,055 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:36,203 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:36,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-27 01:02:36,795 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:37,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-27 01:02:37,341 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:37,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-27 01:02:37,937 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:38,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:38,495 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:38,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:39,031 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:39,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-27 01:02:39,680 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:39,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:39,890 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-27 01:02:40,142 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:40,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-27 01:02:40,716 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:40,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-27 01:02:41,237 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:41,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-27 01:02:41,797 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:42,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:42,334 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:42,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:42,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:43,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-27 01:02:43,498 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:43,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-27 01:02:44,031 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:44,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-27 01:02:44,577 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:44,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-27 01:02:45,109 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:45,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-27 01:02:45,683 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:45,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:46,185 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:46,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-27 01:02:46,745 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:46,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:46,948 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-27 01:02:46,949 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:46,949 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-27 01:02:46,949 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:46,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:46,951 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:46,954 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:46,954 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:46,957 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:46,960 [ scc.git] DEBUG Already up to date.
2025-08-27 01:02:46,960 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-27 01:02:47,268 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-27 01:02:47,268 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-27 01:02:47,273 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-27 01:02:47,572 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-27 01:02:47,573 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-27 01:02:47,577 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:47,577 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:47,577 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:47,579 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-27 01:02:47,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:47,586 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-27 01:02:47,640 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:02:47,644 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-27 01:02:47,644 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-27 01:02:47,644 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-27 01:02:47,644 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-27 01:02:47,644 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-27 01:02:47,644 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-27 01:02:47,645 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-27 01:02:47,647 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-27 01:02:47,647 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-27 01:02:47,647 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-27 01:02:47,647 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-27 01:02:47,647 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-27 01:02:47,648 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-27 01:02:47,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:47,841 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-27 01:02:47,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:47,848 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-27 01:02:47,858 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:02:47,861 [ scc.git] DEBUG docker | 1 +
2025-08-27 01:02:47,861 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-27 01:02:48,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:48,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:02:48,305 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:48,346 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:48,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:48,348 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:48,389 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:48,394 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cdc52e190> has no local changes
2025-08-27 01:02:48,394 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:48,400 [ scc.git] DEBUG [detached HEAD 61295d2] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:48,400 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:48,400 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:48,557 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:48,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-27 01:02:48,879 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:48,879 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-27 01:02:48,879 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:48,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:48,882 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:48,884 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:48,884 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:48,887 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:48,890 [ scc.git] DEBUG Already up to date.
2025-08-27 01:02:48,890 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:48,890 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:48,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:48,892 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:48,932 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:48,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:48,934 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:48,973 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:48,976 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde748590> has no local changes
2025-08-27 01:02:48,976 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:48,983 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:48,983 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:48,983 [ scc.git] DEBUG [detached HEAD 978b2a6] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:49,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:49,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-27 01:02:49,357 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:02:49,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-27 01:02:49,357 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:49,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:49,360 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:02:49,362 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:02:49,362 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:02:49,365 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:02:49,373 [ scc.git] DEBUG Updating deab817..160d894
2025-08-27 01:02:49,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:50,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-27 01:02:50,100 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:02:50,100 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:50,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:50,102 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:02:50,144 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:02:50,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:02:50,146 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:02:50,187 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:02:50,191 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde639550> has no local changes
2025-08-27 01:02:50,191 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:02:50,197 [ scc.git] DEBUG [detached HEAD 0436437] merge master -Dorg -Ssuccess-only
2025-08-27 01:02:50,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:02:50,197 [ scc.git] INFO Overriding base-branch from master to main
2025-08-27 01:02:50,197 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:02:50,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:50,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-27 01:02:50,890 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:51,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-08-27 01:02:51,409 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:51,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-27 01:02:52,022 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:52,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:52,566 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:52,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:53,084 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:53,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-27 01:02:53,642 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:53,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:02:53,846 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-27 01:02:54,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:54,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-27 01:02:54,620 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:54,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-27 01:02:55,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:55,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-27 01:02:55,652 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:55,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:56,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:56,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:02:56,775 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:57,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-27 01:02:57,304 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:57,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-27 01:02:57,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:58,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-27 01:02:58,310 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:58,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-27 01:02:58,837 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:59,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:02:59,341 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:02:59,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-27 01:02:59,894 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:00,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:03:00,105 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-27 01:03:00,106 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:03:00,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-27 01:03:00,106 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:00,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:00,109 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-27 01:03:00,111 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:03:00,111 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-27 01:03:00,114 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-27 01:03:00,117 [ scc.git] DEBUG Already up to date.
2025-08-27 01:03:00,117 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-27 01:03:00,513 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-27 01:03:00,513 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-27 01:03:00,517 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-08-27 01:03:00,936 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-27 01:03:00,936 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-08-27 01:03:00,939 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:03:00,939 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:00,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:00,941 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-27 01:03:00,944 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:00,946 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-27 01:03:01,078 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-27 01:03:01,078 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-27 01:03:01,078 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-27 01:03:01,078 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-27 01:03:01,081 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-27 01:03:01,086 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-27 01:03:01,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:01,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:01,297 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-27 01:03:01,300 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-27 01:03:01,303 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#516](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-27 01:03:01,305 [ scc.config] DEBUG Found github.token
2025-08-27 01:03:01,305 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-27 01:03:01,305 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-08-27 01:03:01,308 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:01,310 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-08-27 01:03:01,318 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:03:01,321 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-08-27 01:03:01,321 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-08-27 01:03:01,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:01,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:01,758 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:03:01,799 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:01,799 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:01,801 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:03:01,840 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:03:01,844 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cdc531490> has no local changes
2025-08-27 01:03:01,844 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:03:01,851 [ scc.git] DEBUG [detached HEAD 198b640] merge master -Dorg -Ssuccess-only
2025-08-27 01:03:01,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:01,851 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:03:02,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:02,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-27 01:03:02,243 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:03:02,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-27 01:03:02,243 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:02,243 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:02,245 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:03:02,248 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:03:02,248 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:03:02,251 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:03:02,254 [ scc.git] DEBUG Already up to date.
2025-08-27 01:03:02,254 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:03:02,254 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:02,254 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:02,256 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:03:02,296 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:02,296 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:02,298 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:03:02,336 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:03:02,339 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cdc589710> has no local changes
2025-08-27 01:03:02,340 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:03:02,346 [ scc.git] DEBUG [detached HEAD 437a29f] merge master -Dorg -Ssuccess-only
2025-08-27 01:03:02,347 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:02,347 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:03:02,495 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:02,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-27 01:03:02,715 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:03:02,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-27 01:03:02,715 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:02,715 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:02,717 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:03:02,719 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:03:02,720 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:03:02,722 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:03:02,725 [ scc.git] DEBUG Already up to date.
2025-08-27 01:03:02,725 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:03:02,725 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:02,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:02,728 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:03:02,766 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:02,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:02,768 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:03:02,807 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:03:02,810 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cdc5c9f90> has no local changes
2025-08-27 01:03:02,810 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:03:02,817 [ scc.git] DEBUG [detached HEAD 89b4736] merge master -Dorg -Ssuccess-only
2025-08-27 01:03:02,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:02,817 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:03:02,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:03,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-27 01:03:03,518 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:03,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-27 01:03:04,023 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:04,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-27 01:03:04,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:04,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-27 01:03:05,187 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:05,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:03:05,695 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:06,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-27 01:03:06,306 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:06,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:03:06,517 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-27 01:03:06,517 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:03:06,517 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-27 01:03:06,517 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:06,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:06,520 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-27 01:03:06,523 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:03:06,523 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-27 01:03:06,526 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-27 01:03:06,529 [ scc.git] DEBUG Already up to date.
2025-08-27 01:03:06,529 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-27 01:03:06,850 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-27 01:03:06,851 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-27 01:03:06,854 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:03:06,855 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:06,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:06,857 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-27 01:03:06,861 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:06,863 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-27 01:03:06,998 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-27 01:03:06,999 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-27 01:03:06,999 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-27 01:03:06,999 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-27 01:03:07,002 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-27 01:03:07,007 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-27 01:03:07,010 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:07,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:07,221 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-27 01:03:07,223 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-27 01:03:07,226 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#516](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-27 01:03:07,228 [ scc.config] DEBUG Found github.token
2025-08-27 01:03:07,228 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-27 01:03:07,228 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:03:07,268 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:07,268 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:07,270 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:03:07,309 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:03:07,313 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cde639710> has no local changes
2025-08-27 01:03:07,314 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:03:07,320 [ scc.git] DEBUG [detached HEAD e6a3687] merge master -Dorg -Ssuccess-only
2025-08-27 01:03:07,320 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:07,321 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-27 01:03:07,321 [ scc.repo] DEBUG ## PRs found:
2025-08-27 01:03:07,473 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:07,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-27 01:03:08,128 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:08,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-27 01:03:08,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:08,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-27 01:03:09,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:09,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-27 01:03:09,616 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:09,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:03:10,165 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:10,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-27 01:03:10,760 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:10,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-27 01:03:11,236 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:11,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:03:11,450 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-27 01:03:11,701 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:11,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-27 01:03:12,222 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:12,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-27 01:03:12,718 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:13,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-27 01:03:13,257 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:13,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-27 01:03:13,779 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:14,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-27 01:03:14,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:14,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-27 01:03:14,569 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-27 01:03:14,821 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:15,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-27 01:03:15,403 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:15,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-27 01:03:15,924 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:16,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-27 01:03:16,440 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:16,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-27 01:03:16,733 [ scc.repo] DEBUG ## Branches found:
2025-08-27 01:03:16,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-27 01:03:16,733 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:16,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:16,736 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-27 01:03:16,739 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-27 01:03:16,739 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-27 01:03:16,742 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-27 01:03:16,753 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-27 01:03:16,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:17,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-27 01:03:17,684 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:18,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-27 01:03:18,203 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-27 01:03:18,970 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-27 01:03:18,970 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-27 01:03:18,974 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-27 01:03:19,593 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-27 01:03:19,593 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-27 01:03:19,598 [ scc.git] DEBUG ## Unique users: []
2025-08-27 01:03:19,598 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:19,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:19,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-27 01:03:19,607 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:19,609 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-27 01:03:19,709 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-27 01:03:19,710 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-27 01:03:19,710 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-27 01:03:19,713 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-27 01:03:19,717 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-27 01:03:19,720 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:19,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:19,912 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-27 01:03:19,917 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-27 01:03:19,921 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#516](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-27 01:03:19,924 [ scc.config] DEBUG Found github.token
2025-08-27 01:03:19,924 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-27 01:03:19,924 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-27 01:03:19,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:19,931 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-27 01:03:19,940 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-27 01:03:19,944 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-27 01:03:19,944 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-27 01:03:20,164 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:20,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:20,361 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-27 01:03:20,402 [ scc.git] DEBUG Get sha1 of %s
2025-08-27 01:03:20,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-27 01:03:20,405 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:03:20,444 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:03:20,448 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cdc5d8e50> has no local changes
2025-08-27 01:03:20,448 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:03:20,454 [ scc.git] DEBUG [detached HEAD f7387f8] merge master -Dorg -Ssuccess-only
2025-08-27 01:03:20,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:20,455 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-27 01:03:20,534 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-27 01:03:20,614 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:20,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:20,819 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-27 01:03:20,821 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-27 01:03:21,066 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:21,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:21,277 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-27 01:03:21,279 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-27 01:03:21,524 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:21,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:21,715 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-27 01:03:21,717 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-27 01:03:21,963 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:22,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:22,162 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-27 01:03:22,407 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:22,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:22,606 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-27 01:03:22,608 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-27 01:03:22,853 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:23,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:23,074 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-27 01:03:23,076 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-27 01:03:23,321 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:23,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:23,530 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-27 01:03:23,532 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-27 01:03:23,777 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:23,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:23,989 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-27 01:03:23,991 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-27 01:03:24,236 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:24,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:24,426 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-27 01:03:24,428 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-27 01:03:24,673 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:24,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:24,884 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-27 01:03:24,886 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-27 01:03:25,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:25,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:25,377 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-27 01:03:25,379 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-27 01:03:25,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:25,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:25,837 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-27 01:03:25,839 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-27 01:03:26,084 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:26,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:26,283 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-27 01:03:26,528 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:26,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:26,765 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-27 01:03:27,010 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:27,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:27,229 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-27 01:03:27,231 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-27 01:03:27,477 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:27,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:27,690 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-27 01:03:27,936 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:28,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:28,138 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-27 01:03:28,384 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:28,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:28,649 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-27 01:03:28,651 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-27 01:03:28,897 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:29,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:29,100 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-27 01:03:29,102 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-27 01:03:29,348 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:29,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:29,548 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-27 01:03:29,550 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-27 01:03:29,795 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:29,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:29,983 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-27 01:03:29,985 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-27 01:03:30,230 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-27 01:03:30,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-27 01:03:30,434 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-27 01:03:30,434 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-27 01:03:30,524 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4cdf72e210> has local changes
2025-08-27 01:03:30,524 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#516 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/516/)'
2025-08-27 01:03:30,538 [ scc.git] DEBUG [detached HEAD 49e52d1] merge master -Dorg -Ssuccess-only
2025-08-27 01:03:30,538 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-27 01:03:30,538 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-27 01:03:30,538 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,538 [ scc.merge] INFO
2025-08-27 01:03:30,538 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,538 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-27 01:03:30,538 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-27 01:03:30,538 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-27 01:03:30,538 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-27 01:03:30,539 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,539 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-27 01:03:30,539 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-27 01:03:30,539 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,539 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-27 01:03:30,539 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,539 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-27 01:03:30,539 [ scc.merge] INFO
2025-08-27 01:03:30,539 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-27 01:03:30,539 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-27 01:03:30,539 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-27 01:03:30,539 [ scc.merge] INFO Previously merged:
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-27 01:03:30,539 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-27 01:03:30,540 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-27 01:03:30,540 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-27 01:03:30,540 [ scc.merge] INFO Previously merged:
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-27 01:03:30,540 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,540 [ scc.merge] INFO
2025-08-27 01:03:30,540 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,540 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-27 01:03:30,541 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-27 01:03:30,541 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-27 01:03:30,541 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-27 01:03:30,541 [ scc.merge] INFO Previously merged:
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-27 01:03:30,541 [ scc.merge] INFO
2025-08-27 01:03:30,541 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-27 01:03:30,541 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,541 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-27 01:03:30,541 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-27 01:03:30,542 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-27 01:03:30,542 [ scc.merge] INFO Previously merged:
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-27 01:03:30,542 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-27 01:03:30,542 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-27 01:03:30,542 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-27 01:03:30,542 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-27 01:03:30,542 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,542 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-27 01:03:30,542 [ scc.merge] INFO
2025-08-27 01:03:30,542 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-27 01:03:30,543 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-27 01:03:30,543 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-27 01:03:30,543 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-27 01:03:30,543 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-27 01:03:30,543 [ scc.merge] INFO Updating deab817..160d894
2025-08-27 01:03:30,543 [ scc.merge] INFO Previously merged:
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-27 01:03:30,543 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-27 01:03:30,543 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,543 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,543 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-27 01:03:30,543 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,543 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-27 01:03:30,544 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-27 01:03:30,544 [ scc.merge] INFO Already up to date.
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO Repository: ome/scripts
2025-08-27 01:03:30,544 [ scc.merge] INFO Excluded PRs:
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-27 01:03:30,544 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-27 01:03:30,544 [ scc.merge] INFO Previously merged:
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO Merged PRs:
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-27 01:03:30,544 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-27 01:03:30,544 [ scc.merge] INFO
2025-08-27 01:03:30,544 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-27 01:03:30,544 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,546 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-27 01:03:30,547 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-27 01:03:30,549 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,551 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,551 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-27 01:03:30,551 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,553 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,553 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-27 01:03:30,553 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-27 01:03:30,556 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-27 01:03:30,558 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-27 01:03:30,560 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,562 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,562 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-27 01:03:30,563 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-27 01:03:30,565 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-27 01:03:30,567 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-27 01:03:30,569 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-27 01:03:30,571 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,573 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,574 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-27 01:03:30,574 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-27 01:03:30,576 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-27 01:03:30,578 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-27 01:03:30,580 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-27 01:03:30,583 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-27 01:03:30,585 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-27 01:03:30,587 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,589 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,589 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-27 01:03:30,589 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,592 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,592 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-27 01:03:30,592 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-27 01:03:30,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-27 01:03:30,594 [ scc.git] DEBUG Calling 'git remote'
2025-08-27 01:03:30,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 5ec0f46] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD a5c6883] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-27 01:04:21,063 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-27 01:04:31,227 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-27 01:04:33,958 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-27 01:04:39,131 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-27 01:05:21,437 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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