Console Output
Skipping 213 KB..
Full Logs://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-28 00:54:55,511 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:54:55,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:54:55,830 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-28 00:54:55,830 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:54:55,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-28 00:54:55,831 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:54:55,831 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:54:55,833 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:54:55,836 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:54:55,836 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:54:55,839 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:54:55,842 [ scc.git] DEBUG Already up to date.
2025-08-28 00:54:55,842 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-28 00:54:56,480 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-28 00:54:56,480 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-28 00:54:56,485 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-28 00:54:56,772 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-28 00:54:56,772 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-28 00:54:56,777 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:54:56,777 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:54:56,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:54:56,779 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-28 00:54:56,783 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:54:56,786 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-28 00:54:56,795 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:54:56,798 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-28 00:54:56,798 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-28 00:54:56,798 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-28 00:54:56,798 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-28 00:54:56,798 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-28 00:54:56,798 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-28 00:54:56,801 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:54:57,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:54:57,024 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-28 00:54:57,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:54:57,030 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-28 00:54:57,039 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:54:57,042 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-28 00:54:57,042 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-28 00:54:57,276 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:54:57,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:54:57,480 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:54:57,522 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:54:57,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:54:57,525 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:54:57,566 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:54:57,570 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c4503ea10> has no local changes
2025-08-28 00:54:57,570 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:54:57,577 [ scc.git] DEBUG [detached HEAD 9caaa1a] merge master -Dorg -Ssuccess-only
2025-08-28 00:54:57,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:54:57,578 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:54:57,732 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:54:58,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-28 00:54:58,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:54:58,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-28 00:54:59,014 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:00,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-28 00:55:00,288 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:00,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-28 00:55:01,021 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:01,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:01,502 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:01,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-28 00:55:02,110 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:02,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:02,573 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-28 00:55:02,824 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:03,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-28 00:55:03,365 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:03,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-28 00:55:03,924 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:04,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-28 00:55:04,566 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:04,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:05,145 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:05,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-28 00:55:05,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:05,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:05,965 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-28 00:55:05,965 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:05,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-28 00:55:05,966 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:05,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:05,968 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:05,971 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:05,971 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:05,974 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:05,982 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-28 00:55:06,217 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:06,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-28 00:55:06,707 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-28 00:55:06,995 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-28 00:55:06,995 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-28 00:55:06,999 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-28 00:55:07,388 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-28 00:55:07,388 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-28 00:55:07,393 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:07,393 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:07,393 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:07,395 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-28 00:55:07,400 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:07,402 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-28 00:55:07,416 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-28 00:55:07,416 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-28 00:55:07,416 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-28 00:55:07,416 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-28 00:55:07,416 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 00:55:07,416 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 00:55:07,419 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 00:55:07,424 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-28 00:55:07,426 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:07,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:07,780 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-28 00:55:07,785 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 00:55:07,788 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#517](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-28 00:55:07,791 [ scc.config] DEBUG Found github.token
2025-08-28 00:55:07,791 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-28 00:55:07,791 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-28 00:55:07,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:07,798 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-28 00:55:07,813 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-28 00:55:07,813 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-28 00:55:07,813 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-28 00:55:07,814 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 00:55:07,814 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 00:55:07,817 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 00:55:07,822 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-28 00:55:08,032 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:08,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:08,293 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-28 00:55:08,298 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 00:55:08,301 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#517](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-28 00:55:08,303 [ scc.config] DEBUG Found github.token
2025-08-28 00:55:08,303 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-28 00:55:08,303 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:08,345 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:08,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:08,347 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:08,387 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:08,392 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c45469650> has no local changes
2025-08-28 00:55:08,392 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:08,398 [ scc.git] DEBUG [detached HEAD 347913b] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:08,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:08,399 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:08,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:08,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-28 00:55:09,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:09,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-28 00:55:09,895 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:10,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-28 00:55:10,501 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:11,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:11,272 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:11,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:55:11,791 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:12,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-28 00:55:12,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:12,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:12,660 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:55:12,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:13,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-28 00:55:13,221 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-28 00:55:13,472 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:13,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-28 00:55:14,124 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:14,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:14,681 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:14,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:55:15,251 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:15,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-28 00:55:15,823 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:16,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:16,055 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-28 00:55:16,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:16,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-28 00:55:16,588 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-28 00:55:16,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:17,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-28 00:55:17,448 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:17,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:18,044 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:18,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:55:18,619 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:18,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-28 00:55:19,142 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:19,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:19,414 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-28 00:55:19,666 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:20,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-28 00:55:20,537 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:20,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-28 00:55:21,151 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:21,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-28 00:55:21,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:22,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-28 00:55:22,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:22,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-28 00:55:22,920 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:23,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-28 00:55:23,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:23,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-28 00:55:23,886 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:23,886 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-28 00:55:23,887 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:23,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:23,889 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:23,892 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:23,892 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:23,895 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:23,898 [ scc.git] DEBUG Already up to date.
2025-08-28 00:55:23,898 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-28 00:55:24,206 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-28 00:55:24,206 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-28 00:55:24,211 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-28 00:55:24,486 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-28 00:55:24,486 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-28 00:55:24,491 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-28 00:55:24,877 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-28 00:55:24,877 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-28 00:55:24,882 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:24,882 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:24,882 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:24,885 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-28 00:55:24,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:24,890 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-28 00:55:24,899 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:55:24,902 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-28 00:55:24,902 [ scc.git] DEBUG package.json | 2 +-
2025-08-28 00:55:24,902 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-28 00:55:24,905 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:25,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:25,100 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-28 00:55:25,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:25,105 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-28 00:55:25,115 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-28 00:55:25,115 [ scc.git] DEBUG Auto-merging package.json
2025-08-28 00:55:25,116 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:55:25,119 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-28 00:55:25,119 [ scc.git] DEBUG package.json | 2 +-
2025-08-28 00:55:25,119 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-28 00:55:25,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:25,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:25,560 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-28 00:55:25,563 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:25,566 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-28 00:55:25,575 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:55:25,578 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-28 00:55:25,578 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-28 00:55:25,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:26,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:26,096 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:26,139 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:26,140 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:26,142 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:26,183 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:26,187 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c4502ebd0> has no local changes
2025-08-28 00:55:26,187 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:26,194 [ scc.git] DEBUG [detached HEAD c0fe4cd] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:26,194 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:26,194 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:26,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:26,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-28 00:55:26,603 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:26,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-28 00:55:26,604 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:26,604 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:26,606 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:26,609 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:26,609 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:26,612 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:26,615 [ scc.git] DEBUG Already up to date.
2025-08-28 00:55:26,615 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:26,615 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:26,615 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:26,617 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:26,658 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:26,658 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:26,661 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:26,701 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:26,704 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c4503ebd0> has no local changes
2025-08-28 00:55:26,704 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:26,710 [ scc.git] DEBUG [detached HEAD 5f7356f] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:26,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:26,711 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:26,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:27,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-28 00:55:27,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:28,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-28 00:55:28,299 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:28,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-28 00:55:28,805 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:29,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-28 00:55:29,484 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:29,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:30,148 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:30,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:55:30,673 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:30,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-28 00:55:31,244 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:31,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:31,710 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:32,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-28 00:55:32,282 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:32,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-28 00:55:32,516 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-28 00:55:32,768 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:33,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-28 00:55:33,039 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:33,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-28 00:55:33,039 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:33,039 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:33,042 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:33,044 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:33,045 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:33,048 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:33,051 [ scc.git] DEBUG Already up to date.
2025-08-28 00:55:33,051 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-28 00:55:33,342 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-28 00:55:33,343 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-28 00:55:33,347 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:33,347 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:33,347 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:33,350 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-28 00:55:33,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:33,355 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-28 00:55:33,364 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:55:33,367 [ scc.git] DEBUG setup.py | 4 +-
2025-08-28 00:55:33,367 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-28 00:55:33,367 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-28 00:55:33,367 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-28 00:55:33,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:33,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:33,586 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:33,626 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:33,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:33,629 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:33,668 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:33,672 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c44640b10> has no local changes
2025-08-28 00:55:33,672 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:33,679 [ scc.git] DEBUG [detached HEAD a23c1b2] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:33,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:33,679 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:33,838 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:34,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-28 00:55:34,679 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:35,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-28 00:55:35,272 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:35,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-28 00:55:35,772 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:36,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-28 00:55:36,625 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:37,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:37,415 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:38,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-28 00:55:38,256 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:38,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:38,583 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-28 00:55:38,584 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:38,584 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-28 00:55:38,584 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:38,584 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:38,587 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:38,589 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:38,589 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:38,592 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:38,595 [ scc.git] DEBUG Already up to date.
2025-08-28 00:55:38,595 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-28 00:55:39,161 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-28 00:55:39,161 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-28 00:55:39,165 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:39,165 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:39,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:39,168 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-28 00:55:39,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:39,173 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-28 00:55:39,183 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-28 00:55:39,183 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-28 00:55:39,183 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-28 00:55:39,184 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-28 00:55:39,184 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-28 00:55:39,184 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-28 00:55:39,184 [ scc.git] DEBUG Auto-merging setup.py
2025-08-28 00:55:39,184 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-28 00:55:39,184 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 00:55:39,184 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 00:55:39,187 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-28 00:55:39,191 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-28 00:55:39,194 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:39,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:39,436 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-28 00:55:39,439 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-28 00:55:39,443 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#517](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
--conflicts
2025-08-28 00:55:39,445 [ scc.config] DEBUG Found github.token
2025-08-28 00:55:39,445 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-28 00:55:39,445 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:39,486 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:39,486 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:39,489 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:39,528 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:39,532 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c44fb6a10> has no local changes
2025-08-28 00:55:39,532 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:39,539 [ scc.git] DEBUG [detached HEAD 35e7e67] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:39,539 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:39,539 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:39,688 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:40,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-28 00:55:40,329 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:40,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-28 00:55:40,858 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:41,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-28 00:55:41,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:41,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:42,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:42,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:55:42,790 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:43,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-28 00:55:43,388 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:43,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:43,865 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-28 00:55:44,117 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:44,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-28 00:55:44,698 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:45,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-28 00:55:45,258 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:45,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-28 00:55:46,082 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:46,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:46,879 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:47,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:55:47,385 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:48,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-28 00:55:48,424 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:48,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-28 00:55:49,040 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:49,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-28 00:55:49,893 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:50,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-28 00:55:50,902 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:51,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-28 00:55:51,525 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:51,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:52,129 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:52,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-28 00:55:52,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:53,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:55:53,196 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-28 00:55:53,196 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:53,196 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-28 00:55:53,197 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:53,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:53,199 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:53,202 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:53,202 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:53,205 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:53,208 [ scc.git] DEBUG Already up to date.
2025-08-28 00:55:53,208 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-28 00:55:53,502 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-28 00:55:53,502 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-28 00:55:53,507 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-28 00:55:53,793 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-28 00:55:53,793 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-28 00:55:53,798 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:53,798 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:53,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:53,800 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-28 00:55:53,804 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:53,806 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-28 00:55:53,819 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-28 00:55:53,822 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-28 00:55:53,823 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-28 00:55:53,825 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-28 00:55:53,825 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-28 00:55:53,825 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-28 00:55:53,825 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-28 00:55:53,825 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-28 00:55:53,825 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-28 00:55:53,826 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-28 00:55:54,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:54,027 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-28 00:55:54,032 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:54,034 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-28 00:55:54,044 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:55:54,047 [ scc.git] DEBUG docker | 1 +
2025-08-28 00:55:54,047 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-28 00:55:54,279 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:54,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:55:54,466 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:54,508 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:54,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:54,511 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:54,551 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:54,555 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c4463c490> has no local changes
2025-08-28 00:55:54,555 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:54,561 [ scc.git] DEBUG [detached HEAD 2df3500] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:54,562 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:54,562 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:54,718 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:55,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-28 00:55:55,037 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:55,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-28 00:55:55,037 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:55,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:55,040 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:55,043 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:55,043 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:55,046 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:55,049 [ scc.git] DEBUG Already up to date.
2025-08-28 00:55:55,049 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:55,049 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:55,049 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:55,051 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:55,092 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:55,092 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:55,094 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:55,135 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:55,139 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c4465af10> has no local changes
2025-08-28 00:55:55,139 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:55,145 [ scc.git] DEBUG [detached HEAD cf2d85c] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:55,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:55,145 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:55,289 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:55,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-28 00:55:55,604 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:55:55,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-28 00:55:55,604 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:55,604 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:55,607 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:55:55,609 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:55:55,609 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:55:55,612 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:55:55,621 [ scc.git] DEBUG Updating deab817..160d894
2025-08-28 00:55:55,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:56,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-28 00:55:56,316 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:55:56,316 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:56,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:56,319 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:55:56,360 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:55:56,360 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:55:56,362 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:55:56,403 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:55:56,406 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c44f9ff10> has no local changes
2025-08-28 00:55:56,406 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:55:56,413 [ scc.git] DEBUG [detached HEAD 97f3b34] merge master -Dorg -Ssuccess-only
2025-08-28 00:55:56,413 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:55:56,413 [ scc.git] INFO Overriding base-branch from master to main
2025-08-28 00:55:56,413 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:55:56,567 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:56,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-28 00:55:57,244 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:57,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-08-28 00:55:57,893 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:58,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-28 00:55:59,179 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:55:59,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:55:59,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:00,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:56:00,772 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:01,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-28 00:56:01,263 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:01,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:56:01,901 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-28 00:56:02,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:02,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-28 00:56:02,692 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:03,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-28 00:56:03,402 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:03,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-28 00:56:04,147 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:04,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:56:04,717 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:05,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:56:05,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:05,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-28 00:56:05,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:06,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-28 00:56:06,700 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:06,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-28 00:56:07,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:07,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-28 00:56:07,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:08,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:56:08,414 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:08,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-28 00:56:08,941 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:09,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:56:09,525 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-28 00:56:09,525 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:56:09,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-28 00:56:09,525 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:09,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:09,528 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-28 00:56:09,531 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:56:09,531 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-28 00:56:09,534 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-28 00:56:09,537 [ scc.git] DEBUG Already up to date.
2025-08-28 00:56:09,537 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-28 00:56:10,100 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-28 00:56:10,100 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-28 00:56:10,105 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-08-28 00:56:10,397 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-28 00:56:10,397 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-08-28 00:56:10,402 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:56:10,402 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:10,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:10,405 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-28 00:56:10,408 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:10,410 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-28 00:56:10,418 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-28 00:56:10,418 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-28 00:56:10,418 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 00:56:10,418 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 00:56:10,421 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-28 00:56:10,426 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-28 00:56:10,428 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:10,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:10,622 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-28 00:56:10,625 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-28 00:56:10,628 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#517](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-28 00:56:10,630 [ scc.config] DEBUG Found github.token
2025-08-28 00:56:10,630 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-28 00:56:10,630 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-08-28 00:56:10,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:10,635 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-08-28 00:56:10,644 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:56:10,647 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-08-28 00:56:10,647 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-08-28 00:56:10,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:11,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:11,096 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:56:11,136 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:11,137 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:11,139 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:56:11,181 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:56:11,185 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c4466c810> has no local changes
2025-08-28 00:56:11,185 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:56:11,191 [ scc.git] DEBUG [detached HEAD 743f898] merge master -Dorg -Ssuccess-only
2025-08-28 00:56:11,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:11,192 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:56:11,348 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:11,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-28 00:56:11,718 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:56:11,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-28 00:56:11,719 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:11,719 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:11,721 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:56:11,724 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:56:11,724 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:56:11,727 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:56:11,730 [ scc.git] DEBUG Already up to date.
2025-08-28 00:56:11,730 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:56:11,730 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:11,730 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:11,732 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:56:11,775 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:11,775 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:11,777 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:56:11,818 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:56:11,822 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c44654fd0> has no local changes
2025-08-28 00:56:11,822 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:56:11,828 [ scc.git] DEBUG [detached HEAD 517c791] merge master -Dorg -Ssuccess-only
2025-08-28 00:56:11,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:11,828 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:56:11,971 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:12,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-28 00:56:12,261 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:56:12,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-28 00:56:12,261 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:12,261 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:12,264 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:56:12,266 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:56:12,267 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:56:12,270 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:56:12,273 [ scc.git] DEBUG Already up to date.
2025-08-28 00:56:12,273 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:56:12,273 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:12,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:12,275 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:56:12,315 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:12,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:12,317 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:56:12,354 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:56:12,358 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c46edc510> has no local changes
2025-08-28 00:56:12,358 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:56:12,364 [ scc.git] DEBUG [detached HEAD d8b6a8c] merge master -Dorg -Ssuccess-only
2025-08-28 00:56:12,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:12,364 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:56:12,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:13,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-28 00:56:13,475 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:13,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-28 00:56:14,085 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:14,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-28 00:56:14,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:15,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-28 00:56:15,285 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:15,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:56:15,858 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:17,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-28 00:56:17,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:17,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:56:17,910 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-28 00:56:17,910 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:56:17,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-28 00:56:17,910 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:17,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:17,913 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 00:56:17,915 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:56:17,915 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 00:56:17,918 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 00:56:17,921 [ scc.git] DEBUG Already up to date.
2025-08-28 00:56:17,922 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-28 00:56:18,555 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-28 00:56:18,555 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-28 00:56:18,559 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:56:18,560 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:18,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:18,562 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-28 00:56:18,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:18,567 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-28 00:56:18,576 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-28 00:56:18,576 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-28 00:56:18,577 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 00:56:18,577 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 00:56:18,580 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-28 00:56:18,585 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-28 00:56:18,587 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:19,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:19,293 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-28 00:56:19,296 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-28 00:56:19,299 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#517](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-28 00:56:19,301 [ scc.config] DEBUG Found github.token
2025-08-28 00:56:19,301 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-28 00:56:19,301 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:56:19,343 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:19,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:19,345 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:56:19,386 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:56:19,390 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c446d6bd0> has no local changes
2025-08-28 00:56:19,390 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:56:19,396 [ scc.git] DEBUG [detached HEAD 1d3a5ee] merge master -Dorg -Ssuccess-only
2025-08-28 00:56:19,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:19,397 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-28 00:56:19,397 [ scc.repo] DEBUG ## PRs found:
2025-08-28 00:56:19,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:20,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-28 00:56:20,428 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:20,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-28 00:56:20,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:21,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-28 00:56:21,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:22,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-28 00:56:22,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:22,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:56:22,957 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:23,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 00:56:23,580 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:23,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-28 00:56:24,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:24,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:56:24,343 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-28 00:56:24,595 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:25,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-28 00:56:25,432 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:26,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-28 00:56:26,265 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:26,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-28 00:56:27,122 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:27,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 00:56:27,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:28,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-28 00:56:28,478 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:28,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-28 00:56:28,977 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-28 00:56:29,229 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:29,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-28 00:56:29,888 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:30,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-28 00:56:30,509 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:30,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-28 00:56:31,128 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:31,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-28 00:56:31,369 [ scc.repo] DEBUG ## Branches found:
2025-08-28 00:56:31,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-28 00:56:31,369 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:31,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:31,372 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-28 00:56:31,375 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 00:56:31,375 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-28 00:56:31,378 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-28 00:56:31,389 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-28 00:56:31,621 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:32,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-28 00:56:32,281 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:32,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-28 00:56:32,778 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-28 00:56:33,593 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-28 00:56:33,593 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-28 00:56:33,597 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-28 00:56:34,229 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-28 00:56:34,230 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-28 00:56:34,234 [ scc.git] DEBUG ## Unique users: []
2025-08-28 00:56:34,234 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:34,234 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:34,237 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-28 00:56:34,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:34,245 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-28 00:56:34,256 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-28 00:56:34,256 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 00:56:34,257 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 00:56:34,259 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-28 00:56:34,263 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-28 00:56:34,266 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:34,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:34,494 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-28 00:56:34,500 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-28 00:56:34,504 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#517](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-28 00:56:34,506 [ scc.config] DEBUG Found github.token
2025-08-28 00:56:34,506 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-28 00:56:34,506 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-28 00:56:34,511 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:34,513 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-28 00:56:34,524 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 00:56:34,528 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-28 00:56:34,528 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-28 00:56:34,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:34,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:34,966 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 00:56:35,007 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 00:56:35,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 00:56:35,009 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:56:35,050 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:56:35,054 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c45156190> has no local changes
2025-08-28 00:56:35,054 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:56:35,061 [ scc.git] DEBUG [detached HEAD 856d227] merge master -Dorg -Ssuccess-only
2025-08-28 00:56:35,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:35,061 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 00:56:35,139 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-28 00:56:35,219 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:35,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:35,716 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-28 00:56:35,718 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-28 00:56:35,963 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:36,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:36,199 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-28 00:56:36,201 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-28 00:56:36,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:36,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:36,654 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-28 00:56:36,656 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-28 00:56:36,901 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:37,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:37,117 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-28 00:56:37,363 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:37,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:37,909 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-28 00:56:37,911 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-28 00:56:38,156 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:38,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:38,620 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-28 00:56:38,623 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-28 00:56:38,868 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:39,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:39,202 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-28 00:56:39,204 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-28 00:56:39,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:39,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:39,756 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-28 00:56:39,758 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-28 00:56:40,003 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:40,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:40,800 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-28 00:56:40,802 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-28 00:56:41,047 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:41,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:41,496 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-28 00:56:41,498 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-28 00:56:41,743 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:41,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:41,934 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-28 00:56:41,936 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-28 00:56:42,181 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:42,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:42,384 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-28 00:56:42,386 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-28 00:56:42,631 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:42,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:42,853 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-28 00:56:43,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:43,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:43,314 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-28 00:56:43,559 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:44,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:44,128 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-28 00:56:44,130 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-28 00:56:44,375 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:44,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:44,665 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-28 00:56:44,910 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:45,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:45,302 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-28 00:56:45,547 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:45,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:45,749 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-28 00:56:45,751 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-28 00:56:45,996 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:46,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:46,321 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-28 00:56:46,323 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-28 00:56:46,568 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:46,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:46,903 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-28 00:56:46,905 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-28 00:56:47,150 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:47,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:47,356 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-28 00:56:47,358 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-28 00:56:47,603 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 00:56:48,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 00:56:48,632 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-28 00:56:48,632 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 00:56:48,722 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7c476539d0> has local changes
2025-08-28 00:56:48,722 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#517 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/517/)'
2025-08-28 00:56:48,736 [ scc.git] DEBUG [detached HEAD 4ef0cd2] merge master -Dorg -Ssuccess-only
2025-08-28 00:56:48,736 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-28 00:56:48,736 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-28 00:56:48,736 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,736 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-28 00:56:48,736 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-28 00:56:48,736 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-28 00:56:48,736 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-28 00:56:48,736 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,736 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-28 00:56:48,736 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-28 00:56:48,736 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,736 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-28 00:56:48,736 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-28 00:56:48,736 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,736 [ scc.merge] INFO
2025-08-28 00:56:48,736 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-28 00:56:48,737 [ scc.merge] INFO
2025-08-28 00:56:48,737 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-28 00:56:48,737 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-28 00:56:48,737 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-28 00:56:48,737 [ scc.merge] INFO Previously merged:
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:56:48,737 [ scc.merge] INFO
2025-08-28 00:56:48,737 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-08-28 00:56:48,737 [ scc.merge] INFO
2025-08-28 00:56:48,737 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-28 00:56:48,737 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-28 00:56:48,737 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-28 00:56:48,737 [ scc.merge] INFO Previously merged:
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-28 00:56:48,737 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-28 00:56:48,738 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-28 00:56:48,738 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-28 00:56:48,738 [ scc.merge] INFO
2025-08-28 00:56:48,738 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-28 00:56:48,738 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-28 00:56:48,738 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-28 00:56:48,738 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-28 00:56:48,739 [ scc.merge] INFO Previously merged:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-28 00:56:48,739 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-28 00:56:48,739 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-28 00:56:48,739 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-28 00:56:48,739 [ scc.merge] INFO Previously merged:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-28 00:56:48,739 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-28 00:56:48,739 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,739 [ scc.merge] INFO
2025-08-28 00:56:48,739 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,739 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-28 00:56:48,740 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-28 00:56:48,740 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-28 00:56:48,740 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-28 00:56:48,740 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-28 00:56:48,740 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-28 00:56:48,740 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-28 00:56:48,740 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,740 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-28 00:56:48,740 [ scc.merge] INFO Updating deab817..160d894
2025-08-28 00:56:48,740 [ scc.merge] INFO Previously merged:
2025-08-28 00:56:48,740 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-28 00:56:48,740 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-28 00:56:48,741 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-28 00:56:48,741 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-28 00:56:48,741 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-28 00:56:48,741 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-28 00:56:48,741 [ scc.merge] INFO Already up to date.
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Repository: ome/scripts
2025-08-28 00:56:48,741 [ scc.merge] INFO Excluded PRs:
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-28 00:56:48,741 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-28 00:56:48,741 [ scc.merge] INFO Previously merged:
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Merged PRs:
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-28 00:56:48,741 [ scc.merge] INFO
2025-08-28 00:56:48,741 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 00:56:48,741 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-28 00:56:48,742 [ scc.merge] INFO
2025-08-28 00:56:48,742 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-28 00:56:48,742 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,744 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-28 00:56:48,744 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-28 00:56:48,746 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-28 00:56:48,748 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,751 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,751 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-28 00:56:48,751 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-28 00:56:48,753 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-28 00:56:48,755 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,757 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,758 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-28 00:56:48,758 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-28 00:56:48,760 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-28 00:56:48,762 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-28 00:56:48,764 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-28 00:56:48,767 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,769 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,769 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-28 00:56:48,769 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-28 00:56:48,771 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,773 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,773 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-28 00:56:48,774 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,776 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,776 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-28 00:56:48,776 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-28 00:56:48,778 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-28 00:56:48,780 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-28 00:56:48,782 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-28 00:56:48,785 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-28 00:56:48,787 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,789 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,789 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-28 00:56:48,789 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 00:56:48,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-28 00:56:48,791 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 00:56:48,794 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 059eb80] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD d79259f] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-28 00:57:47,004 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-28 00:57:58,623 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-28 00:58:01,612 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-28 00:58:07,362 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-28 00:58:55,014 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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