Console Output
Skipping 216 KB..
Full Loggithub/workflows/publish_pypi.yml | 2 +-
2025-08-28 14:57:48,092 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-28 14:57:48,325 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:48,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:57:48,556 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:57:48,596 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:57:48,597 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:57:48,599 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:57:48,639 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:57:48,643 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59e5faf50> has no local changes
2025-08-28 14:57:48,643 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:57:48,650 [ scc.git] DEBUG [detached HEAD 41f2436] merge master -Dorg -Ssuccess-only
2025-08-28 14:57:48,650 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:57:48,650 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:57:48,808 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:49,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-28 14:57:49,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:49,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-28 14:57:49,950 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:50,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-28 14:57:50,628 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:50,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-28 14:57:51,223 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:51,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:57:51,708 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:52,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-28 14:57:52,315 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:52,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:57:52,560 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-28 14:57:52,813 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:53,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-28 14:57:53,350 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:53,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-28 14:57:53,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:54,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-28 14:57:54,423 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:54,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:57:54,936 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:55,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-28 14:57:55,453 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:55,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:57:55,707 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-28 14:57:55,707 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:57:55,707 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-28 14:57:55,707 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:57:55,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:57:55,710 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:57:55,714 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:57:55,714 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:57:55,717 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:57:55,724 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-28 14:57:55,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:56,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-28 14:57:56,460 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-28 14:57:56,746 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-28 14:57:56,746 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-28 14:57:56,751 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-28 14:57:57,060 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-28 14:57:57,060 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-28 14:57:57,065 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:57:57,065 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:57:57,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:57:57,067 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-28 14:57:57,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:57:57,074 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-28 14:57:57,087 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-28 14:57:57,088 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-28 14:57:57,088 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-28 14:57:57,088 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-28 14:57:57,088 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 14:57:57,088 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 14:57:57,091 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 14:57:57,095 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-28 14:57:57,098 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:57,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:57:57,309 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-28 14:57:57,314 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 14:57:57,318 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#518](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-08-28 14:57:57,320 [ scc.config] DEBUG Found github.token
2025-08-28 14:57:57,320 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-28 14:57:57,320 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-28 14:57:57,324 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:57:57,327 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-28 14:57:57,342 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-28 14:57:57,342 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-28 14:57:57,342 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-28 14:57:57,342 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 14:57:57,343 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 14:57:57,346 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 14:57:57,351 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-28 14:57:57,561 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:57,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:57:57,763 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-28 14:57:57,767 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-28 14:57:57,770 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#518](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-28 14:57:57,772 [ scc.config] DEBUG Found github.token
2025-08-28 14:57:57,772 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-28 14:57:57,772 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:57:57,813 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:57:57,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:57:57,815 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:57:57,854 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:57:57,858 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59e3c8f10> has no local changes
2025-08-28 14:57:57,858 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:57:57,866 [ scc.git] DEBUG [detached HEAD d64b4c9] merge master -Dorg -Ssuccess-only
2025-08-28 14:57:57,867 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:57:57,867 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:57:58,015 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:58,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-28 14:57:58,754 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:59,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-28 14:57:59,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:57:59,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-28 14:57:59,978 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:00,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:00,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:00,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:01,106 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:01,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-28 14:58:01,585 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:01,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:01,804 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:58:02,056 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:02,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-28 14:58:02,375 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-28 14:58:02,627 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:03,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-28 14:58:03,275 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:03,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:03,863 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:04,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:04,447 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:04,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-28 14:58:04,944 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:05,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:05,184 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-28 14:58:05,436 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:05,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-28 14:58:05,726 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-28 14:58:05,978 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:06,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-28 14:58:06,686 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:07,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:07,261 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:07,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:07,905 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:08,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-28 14:58:08,521 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:08,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:08,736 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-28 14:58:08,988 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:09,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-28 14:58:09,534 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:09,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-28 14:58:10,135 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:10,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-28 14:58:10,653 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:10,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-28 14:58:11,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:11,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-28 14:58:11,749 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:12,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-28 14:58:12,303 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:12,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-28 14:58:12,594 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:12,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-28 14:58:12,594 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:12,594 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:12,597 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:12,600 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:12,600 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:12,603 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:12,606 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:12,606 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-28 14:58:12,911 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-28 14:58:12,911 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-28 14:58:12,916 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-28 14:58:13,240 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-28 14:58:13,240 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-28 14:58:13,245 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-28 14:58:13,752 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-28 14:58:13,752 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-28 14:58:13,757 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:13,757 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:13,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:13,759 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-28 14:58:13,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:13,764 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-28 14:58:13,773 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:13,776 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-28 14:58:13,776 [ scc.git] DEBUG package.json | 2 +-
2025-08-28 14:58:13,776 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-28 14:58:13,779 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:14,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:14,011 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-28 14:58:14,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:14,017 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-28 14:58:14,026 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-28 14:58:14,027 [ scc.git] DEBUG Auto-merging package.json
2025-08-28 14:58:14,027 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:14,031 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-28 14:58:14,031 [ scc.git] DEBUG package.json | 2 +-
2025-08-28 14:58:14,031 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-28 14:58:14,263 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:14,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:14,498 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-28 14:58:14,501 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:14,503 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-28 14:58:14,512 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:14,515 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-28 14:58:14,515 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-28 14:58:14,750 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:14,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:14,962 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:15,006 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:15,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:15,008 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:15,049 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:15,053 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d24b050> has no local changes
2025-08-28 14:58:15,053 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:15,060 [ scc.git] DEBUG [detached HEAD e3c2c82] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:15,060 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:15,060 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:15,214 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:15,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-28 14:58:15,469 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:15,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-28 14:58:15,469 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:15,470 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:15,472 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:15,474 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:15,474 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:15,477 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:15,480 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:15,480 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:15,480 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:15,480 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:15,483 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:15,525 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:15,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:15,527 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:15,569 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:15,572 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d22a850> has no local changes
2025-08-28 14:58:15,572 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:15,578 [ scc.git] DEBUG [detached HEAD 32e0f2a] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:15,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:15,579 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:15,722 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:16,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-28 14:58:16,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:16,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-28 14:58:16,948 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:17,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-28 14:58:17,493 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:17,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-28 14:58:18,092 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:18,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:18,658 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:18,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:19,195 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:19,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-28 14:58:19,796 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:20,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:20,302 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:20,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-28 14:58:20,892 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:21,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-28 14:58:21,129 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-28 14:58:21,381 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:21,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-28 14:58:21,681 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:21,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-28 14:58:21,681 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:21,681 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:21,684 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:21,686 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:21,686 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:21,689 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:21,692 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:21,692 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-28 14:58:22,160 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-28 14:58:22,161 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-28 14:58:22,165 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:22,165 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:22,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:22,167 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-28 14:58:22,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:22,173 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-28 14:58:22,181 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:22,184 [ scc.git] DEBUG setup.py | 4 +-
2025-08-28 14:58:22,184 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-28 14:58:22,184 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-28 14:58:22,184 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-28 14:58:22,187 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:22,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:22,419 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:22,461 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:22,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:22,463 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:22,504 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:22,508 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d243b90> has no local changes
2025-08-28 14:58:22,508 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:22,514 [ scc.git] DEBUG [detached HEAD 74efe32] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:22,515 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:22,515 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:22,671 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:23,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-28 14:58:23,263 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:23,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-28 14:58:23,800 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:24,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-28 14:58:24,301 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:24,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-28 14:58:24,935 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:25,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:25,482 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:25,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-28 14:58:26,080 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:26,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:26,326 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-28 14:58:26,326 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:26,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-28 14:58:26,327 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:26,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:26,330 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:26,332 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:26,332 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:26,335 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:26,338 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:26,338 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-28 14:58:26,641 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-28 14:58:26,641 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-28 14:58:26,646 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:26,646 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:26,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:26,648 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-28 14:58:26,651 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:26,654 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-28 14:58:26,663 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG Auto-merging setup.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-28 14:58:26,663 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 14:58:26,664 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 14:58:26,666 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-28 14:58:26,671 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-28 14:58:26,674 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:27,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:27,606 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-28 14:58:27,610 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-28 14:58:27,613 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#518](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2025-08-28 14:58:27,615 [ scc.config] DEBUG Found github.token
2025-08-28 14:58:27,615 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-28 14:58:27,616 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:27,658 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:27,658 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:27,660 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:27,700 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:27,703 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d21ef90> has no local changes
2025-08-28 14:58:27,704 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:27,710 [ scc.git] DEBUG [detached HEAD 7a4aaec] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:27,710 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:27,710 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:27,858 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:28,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-28 14:58:28,462 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:28,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-28 14:58:28,983 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:29,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-28 14:58:29,579 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:29,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:30,148 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:30,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:30,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:31,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-28 14:58:31,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:31,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:31,588 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-28 14:58:31,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:32,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-28 14:58:32,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:32,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-28 14:58:32,997 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:33,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-28 14:58:33,572 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:33,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:34,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:34,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:34,669 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:34,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-28 14:58:35,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:35,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-28 14:58:35,755 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:36,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-28 14:58:36,306 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:36,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-28 14:58:36,816 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:37,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-28 14:58:37,396 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:37,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:37,931 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:38,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-28 14:58:38,518 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:38,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:38,749 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-28 14:58:38,749 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:38,749 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-28 14:58:38,749 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:38,749 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:38,752 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:38,755 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:38,755 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:38,758 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:38,761 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:38,761 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-28 14:58:39,147 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-28 14:58:39,147 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-28 14:58:39,151 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-28 14:58:39,464 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-28 14:58:39,465 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-28 14:58:39,469 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:39,469 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:39,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:39,472 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-28 14:58:39,476 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:39,478 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-28 14:58:39,491 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-28 14:58:39,495 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-28 14:58:39,497 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-28 14:58:39,497 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-28 14:58:39,497 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-28 14:58:39,498 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-28 14:58:39,498 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-28 14:58:39,498 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-28 14:58:39,498 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-28 14:58:39,499 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-28 14:58:39,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:39,694 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-28 14:58:39,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:39,701 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-28 14:58:39,711 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:39,714 [ scc.git] DEBUG docker | 1 +
2025-08-28 14:58:39,714 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-28 14:58:39,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:40,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:40,151 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:40,192 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:40,192 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:40,194 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:40,234 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:40,238 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59e454450> has no local changes
2025-08-28 14:58:40,238 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:40,244 [ scc.git] DEBUG [detached HEAD 6aed1c1] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:40,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:40,244 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:40,403 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:40,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-28 14:58:40,630 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:40,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-28 14:58:40,631 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:40,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:40,633 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:40,635 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:40,635 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:40,638 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:40,641 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:40,641 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:40,641 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:40,641 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:40,643 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:40,683 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:40,683 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:40,686 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:40,724 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:40,727 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59eb6b610> has no local changes
2025-08-28 14:58:40,727 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:40,734 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:40,734 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:40,734 [ scc.git] DEBUG [detached HEAD ff040f5] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:40,883 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:41,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-28 14:58:41,121 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:41,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-28 14:58:41,121 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:41,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:41,124 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:41,126 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:41,127 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:41,129 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:41,137 [ scc.git] DEBUG Updating deab817..160d894
2025-08-28 14:58:41,373 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:41,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-28 14:58:41,855 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:41,855 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:41,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:41,858 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:41,898 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:41,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:41,900 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:41,940 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:41,943 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d2a2190> has no local changes
2025-08-28 14:58:41,944 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:41,950 [ scc.git] DEBUG [detached HEAD 4a5e54f] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:41,950 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:41,950 [ scc.git] INFO Overriding base-branch from master to main
2025-08-28 14:58:41,950 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:42,107 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:42,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-28 14:58:42,692 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:43,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-08-28 14:58:43,293 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:43,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2 HTTP/1.1" 200 None
2025-08-28 14:58:43,852 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:44,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:45,182 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:45,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:45,725 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:46,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2 HTTP/1.1" 200 None
2025-08-28 14:58:46,315 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:46,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:46,552 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-08-28 14:58:46,804 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:47,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-08-28 14:58:47,341 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:47,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-08-28 14:58:47,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:48,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-28 14:58:48,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:48,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:48,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:49,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:49,485 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:49,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-28 14:58:50,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:50,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:50,305 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-28 14:58:50,557 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:50,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-28 14:58:51,069 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:51,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-28 14:58:51,604 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:51,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-28 14:58:52,177 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:52,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:52,677 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:53,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:58:53,258 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:53,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-28 14:58:53,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:54,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-28 14:58:54,365 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:54,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-28 14:58:54,881 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:55,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-28 14:58:55,551 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:55,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:58:56,135 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:56,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-28 14:58:56,727 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:57,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:58:57,030 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-28 14:58:57,030 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:57,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-28 14:58:57,030 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:57,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:57,033 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-28 14:58:57,036 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:57,036 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-28 14:58:57,039 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-28 14:58:57,042 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:57,042 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-28 14:58:57,332 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-28 14:58:57,332 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-28 14:58:57,337 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-08-28 14:58:57,742 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-28 14:58:57,742 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-08-28 14:58:57,746 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-08-28 14:58:58,247 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-28 14:58:58,247 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-08-28 14:58:58,250 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:58,250 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:58,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:58,252 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-28 14:58:58,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:58,258 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-28 14:58:58,265 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-28 14:58:58,265 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-28 14:58:58,266 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 14:58:58,266 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 14:58:58,269 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-28 14:58:58,273 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-28 14:58:58,275 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:58,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:58,478 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-28 14:58:58,481 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-28 14:58:58,483 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#518](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-28 14:58:58,486 [ scc.config] DEBUG Found github.token
2025-08-28 14:58:58,486 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-28 14:58:58,486 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-08-28 14:58:58,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:58,491 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-08-28 14:58:58,499 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:58,502 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-08-28 14:58:58,502 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-08-28 14:58:58,729 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:58,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:58,958 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2'
2025-08-28 14:58:58,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:58,963 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) 5934b1d040b20e93fd532ce2ba55e2d6fd5da3a2'
2025-08-28 14:58:58,973 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-08-28 14:58:58,974 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:58:58,977 [ scc.git] DEBUG README.rst | 3 +
2025-08-28 14:58:58,977 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 299 +++++++++++++++++++++
2025-08-28 14:58:58,977 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-08-28 14:58:58,977 [ scc.git] DEBUG omero_web_zarr/views.py | 41 ++-
2025-08-28 14:58:58,977 [ scc.git] DEBUG setup.py | 5 +-
2025-08-28 14:58:58,977 [ scc.git] DEBUG 5 files changed, 348 insertions(+), 2 deletions(-)
2025-08-28 14:58:58,977 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-08-28 14:58:59,210 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:59,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:58:59,448 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:59,490 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:59,490 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:59,492 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:58:59,532 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:58:59,536 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d26fad0> has no local changes
2025-08-28 14:58:59,536 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:58:59,542 [ scc.git] DEBUG [detached HEAD 9cfa8a3] merge master -Dorg -Ssuccess-only
2025-08-28 14:58:59,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:58:59,542 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:58:59,700 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:58:59,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-28 14:58:59,920 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:58:59,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-28 14:58:59,920 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:59,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:59,922 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:58:59,925 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:58:59,925 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:58:59,928 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:58:59,931 [ scc.git] DEBUG Already up to date.
2025-08-28 14:58:59,931 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:58:59,931 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:59,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:59,933 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:58:59,973 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:58:59,974 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:58:59,976 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:59:00,014 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:59:00,018 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59e441ad0> has no local changes
2025-08-28 14:59:00,018 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:59:00,024 [ scc.git] DEBUG [detached HEAD 9faeb82] merge master -Dorg -Ssuccess-only
2025-08-28 14:59:00,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:00,024 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:59:00,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:00,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-28 14:59:00,512 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:59:00,512 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-28 14:59:00,512 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:00,512 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:00,515 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:59:00,517 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:59:00,517 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:59:00,520 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:59:00,523 [ scc.git] DEBUG Already up to date.
2025-08-28 14:59:00,523 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:59:00,523 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:00,523 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:00,525 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:59:00,565 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:00,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:00,567 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:59:00,606 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:59:00,610 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d23b590> has no local changes
2025-08-28 14:59:00,610 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:59:00,616 [ scc.git] DEBUG [detached HEAD 47b540e] merge master -Dorg -Ssuccess-only
2025-08-28 14:59:00,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:00,617 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:59:00,764 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:01,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-28 14:59:01,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:01,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-28 14:59:01,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:02,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-28 14:59:02,533 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:02,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-28 14:59:03,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:05,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:59:05,560 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:05,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-28 14:59:06,032 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:06,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:59:06,255 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-28 14:59:06,255 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:59:06,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-28 14:59:06,256 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:06,256 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:06,258 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-28 14:59:06,261 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:59:06,261 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-28 14:59:06,264 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-28 14:59:06,267 [ scc.git] DEBUG Already up to date.
2025-08-28 14:59:06,267 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-28 14:59:06,582 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-28 14:59:06,582 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-28 14:59:06,586 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:59:06,586 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:06,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:06,588 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-28 14:59:06,591 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:06,594 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-28 14:59:06,602 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-28 14:59:06,602 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-28 14:59:06,603 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 14:59:06,603 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 14:59:06,606 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-28 14:59:06,611 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-28 14:59:06,613 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:07,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:07,004 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-28 14:59:07,007 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-28 14:59:07,010 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#518](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-28 14:59:07,012 [ scc.config] DEBUG Found github.token
2025-08-28 14:59:07,012 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-28 14:59:07,012 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:59:07,053 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:07,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:07,055 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:59:07,096 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:59:07,100 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d2db5d0> has no local changes
2025-08-28 14:59:07,100 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:59:07,106 [ scc.git] DEBUG [detached HEAD 229fedd] merge master -Dorg -Ssuccess-only
2025-08-28 14:59:07,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:07,107 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-28 14:59:07,107 [ scc.repo] DEBUG ## PRs found:
2025-08-28 14:59:07,257 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:07,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-28 14:59:08,088 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:08,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-28 14:59:08,690 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:08,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-28 14:59:09,198 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:09,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-28 14:59:09,788 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:10,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:59:10,382 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:10,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-28 14:59:10,991 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:11,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-28 14:59:11,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:11,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:59:11,804 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-28 14:59:12,056 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:12,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-28 14:59:12,594 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:12,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-28 14:59:13,137 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:13,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-28 14:59:13,731 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:14,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-28 14:59:14,263 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:14,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-28 14:59:15,061 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:15,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-28 14:59:15,292 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-28 14:59:15,544 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:15,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-28 14:59:16,105 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:16,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-28 14:59:16,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:16,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-28 14:59:17,214 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:17,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-28 14:59:17,555 [ scc.repo] DEBUG ## Branches found:
2025-08-28 14:59:17,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-28 14:59:17,555 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:17,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:17,558 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-28 14:59:17,561 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-28 14:59:17,561 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-28 14:59:17,564 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-28 14:59:17,574 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-28 14:59:17,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:18,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-28 14:59:18,558 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:19,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-28 14:59:19,388 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-28 14:59:19,723 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-28 14:59:19,723 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-28 14:59:19,727 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-28 14:59:20,025 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-28 14:59:20,025 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-28 14:59:20,029 [ scc.git] DEBUG ## Unique users: []
2025-08-28 14:59:20,030 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:20,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:20,032 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-28 14:59:20,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:20,040 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-28 14:59:20,051 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-28 14:59:20,052 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-28 14:59:20,052 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-28 14:59:20,054 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-28 14:59:20,058 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-28 14:59:20,061 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:20,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:20,291 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-28 14:59:20,297 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-28 14:59:20,301 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#518](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-28 14:59:20,303 [ scc.config] DEBUG Found github.token
2025-08-28 14:59:20,303 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-28 14:59:20,304 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-28 14:59:20,308 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:20,311 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-28 14:59:20,320 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-28 14:59:20,323 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-28 14:59:20,323 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-28 14:59:20,543 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:20,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:20,792 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-28 14:59:20,833 [ scc.git] DEBUG Get sha1 of %s
2025-08-28 14:59:20,834 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-28 14:59:20,836 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:59:20,875 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:59:20,879 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59d2d8e10> has no local changes
2025-08-28 14:59:20,879 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:59:20,889 [ scc.git] DEBUG [detached HEAD 25b4a8a] merge master -Dorg -Ssuccess-only
2025-08-28 14:59:20,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:20,890 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-28 14:59:20,969 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-28 14:59:21,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:21,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:21,308 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-28 14:59:21,310 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-28 14:59:21,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:21,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:21,790 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-28 14:59:21,792 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-28 14:59:22,037 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:22,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:22,290 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-28 14:59:22,292 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-28 14:59:22,537 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:22,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:22,760 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-28 14:59:23,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:23,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:23,208 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-28 14:59:23,210 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-28 14:59:23,455 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:23,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:23,660 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-28 14:59:23,662 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-28 14:59:23,907 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:24,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:24,124 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-28 14:59:24,126 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-28 14:59:24,372 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:24,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:24,594 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-28 14:59:24,596 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-28 14:59:24,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:25,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:25,071 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-28 14:59:25,073 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-28 14:59:25,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:25,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:25,535 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-28 14:59:25,537 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-28 14:59:25,782 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:25,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:25,999 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-28 14:59:26,001 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-28 14:59:26,247 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:26,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:26,471 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-28 14:59:26,473 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-28 14:59:26,718 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:26,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:26,922 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-28 14:59:27,167 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:27,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:27,370 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-28 14:59:27,615 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:27,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:27,854 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-28 14:59:27,856 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-28 14:59:28,101 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:28,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:28,310 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-28 14:59:28,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:28,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:28,802 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-28 14:59:29,047 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:29,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:29,260 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-28 14:59:29,262 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-28 14:59:29,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:29,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:29,735 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-28 14:59:29,737 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-28 14:59:29,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:30,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:30,187 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-28 14:59:30,189 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-28 14:59:30,434 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:30,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:30,648 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-28 14:59:30,649 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-28 14:59:30,895 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-28 14:59:31,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-28 14:59:31,106 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-28 14:59:31,106 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-28 14:59:31,194 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe59e427a90> has local changes
2025-08-28 14:59:31,194 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#518 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/518/)'
2025-08-28 14:59:31,207 [ scc.git] DEBUG [detached HEAD d6a0796] merge master -Dorg -Ssuccess-only
2025-08-28 14:59:31,207 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-28 14:59:31,208 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-28 14:59:31,208 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-28 14:59:31,208 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-28 14:59:31,208 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-28 14:59:31,208 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-28 14:59:31,208 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-28 14:59:31,208 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,208 [ scc.merge] INFO
2025-08-28 14:59:31,208 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,208 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-28 14:59:31,209 [ scc.merge] INFO
2025-08-28 14:59:31,209 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-28 14:59:31,209 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-28 14:59:31,209 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-28 14:59:31,209 [ scc.merge] INFO Previously merged:
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:59:31,209 [ scc.merge] INFO
2025-08-28 14:59:31,209 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-08-28 14:59:31,209 [ scc.merge] INFO
2025-08-28 14:59:31,209 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-28 14:59:31,209 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-28 14:59:31,209 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-28 14:59:31,209 [ scc.merge] INFO Previously merged:
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-28 14:59:31,209 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-28 14:59:31,210 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-28 14:59:31,210 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-28 14:59:31,210 [ scc.merge] INFO
2025-08-28 14:59:31,210 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-28 14:59:31,210 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-28 14:59:31,210 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-28 14:59:31,211 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-28 14:59:31,211 [ scc.merge] INFO Previously merged:
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-28 14:59:31,211 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-28 14:59:31,211 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-28 14:59:31,211 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-28 14:59:31,211 [ scc.merge] INFO Previously merged:
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-28 14:59:31,211 [ scc.merge] INFO
2025-08-28 14:59:31,211 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-28 14:59:31,211 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-28 14:59:31,211 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-28 14:59:31,212 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-28 14:59:31,212 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-28 14:59:31,212 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-28 14:59:31,212 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-28 14:59:31,212 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-28 14:59:31,212 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-28 14:59:31,212 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-28 14:59:31,212 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-28 14:59:31,212 [ scc.merge] INFO
2025-08-28 14:59:31,212 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-28 14:59:31,212 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-28 14:59:31,213 [ scc.merge] INFO Updating deab817..160d894
2025-08-28 14:59:31,213 [ scc.merge] INFO Previously merged:
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-28 14:59:31,213 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-28 14:59:31,213 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-28 14:59:31,213 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-28 14:59:31,213 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-28 14:59:31,213 [ scc.merge] INFO Already up to date.
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-28 14:59:31,213 [ scc.merge] INFO
2025-08-28 14:59:31,213 [ scc.merge] INFO Repository: ome/scripts
2025-08-28 14:59:31,213 [ scc.merge] INFO Excluded PRs:
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-28 14:59:31,213 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-28 14:59:31,214 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-28 14:59:31,214 [ scc.merge] INFO Previously merged:
2025-08-28 14:59:31,214 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-28 14:59:31,214 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-28 14:59:31,214 [ scc.merge] INFO
2025-08-28 14:59:31,214 [ scc.merge] INFO Merged PRs:
2025-08-28 14:59:31,214 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-28 14:59:31,214 [ scc.merge] INFO
2025-08-28 14:59:31,214 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-28 14:59:31,214 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-28 14:59:31,214 [ scc.merge] INFO
2025-08-28 14:59:31,214 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-28 14:59:31,214 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-28 14:59:31,216 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,218 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-28 14:59:31,219 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-28 14:59:31,221 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-28 14:59:31,223 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-28 14:59:31,225 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-28 14:59:31,228 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-28 14:59:31,230 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-28 14:59:31,232 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-28 14:59:31,234 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-28 14:59:31,237 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-28 14:59:31,239 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-28 14:59:31,241 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-28 14:59:31,244 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-28 14:59:31,246 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-28 14:59:31,248 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-28 14:59:31,250 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,252 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-28 14:59:31,253 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-28 14:59:31,255 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-28 14:59:31,257 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-28 14:59:31,259 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-28 14:59:31,262 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-28 14:59:31,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-28 14:59:31,264 [ scc.git] DEBUG Calling 'git remote'
2025-08-28 14:59:31,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD d2b18af] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 093d762] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-28 15:00:29,740 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-28 15:00:42,456 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-28 15:00:45,537 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-28 15:00:51,286 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-28 15:01:37,100 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
