Skipping 235 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-31 00:45:22,974 [ scc.git] DEBUG [detached HEAD f151786] merge master -Dorg -Ssuccess-only
2025-08-31 00:45:22,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:45:22,975 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:45:23,129 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:23,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-31 00:45:23,704 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:23,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-31 00:45:24,227 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:24,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-31 00:45:24,769 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:25,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-31 00:45:25,346 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:25,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:25,953 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:26,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-31 00:45:26,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:26,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:45:26,721 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-31 00:45:26,973 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:27,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-31 00:45:27,535 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:27,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-31 00:45:28,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:28,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-31 00:45:28,584 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:28,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:29,054 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:29,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-31 00:45:29,607 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:29,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:45:29,822 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-31 00:45:29,822 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:45:29,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-31 00:45:29,822 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:29,822 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:29,825 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:45:29,828 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:45:29,828 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:45:29,831 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:45:29,839 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-31 00:45:30,074 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:30,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-31 00:45:30,496 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-31 00:45:30,777 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-31 00:45:30,777 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-31 00:45:30,782 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-31 00:45:31,061 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-31 00:45:31,062 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-31 00:45:31,066 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:45:31,066 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:31,066 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:31,068 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-31 00:45:31,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:31,075 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-31 00:45:31,089 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-31 00:45:31,089 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-31 00:45:31,089 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-31 00:45:31,089 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-31 00:45:31,089 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-31 00:45:31,090 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-31 00:45:31,092 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-31 00:45:31,097 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-31 00:45:31,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:31,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:31,302 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-31 00:45:31,306 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-31 00:45:31,310 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#521](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-31 00:45:31,312 [ scc.config] DEBUG Found github.token
2025-08-31 00:45:31,312 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-31 00:45:31,312 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-31 00:45:31,317 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:31,319 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-31 00:45:31,335 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-31 00:45:31,335 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-31 00:45:31,335 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-31 00:45:31,335 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-31 00:45:31,336 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-31 00:45:31,339 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-31 00:45:31,344 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-31 00:45:31,553 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:31,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:31,752 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-31 00:45:31,756 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-31 00:45:31,759 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#521](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-31 00:45:31,761 [ scc.config] DEBUG Found github.token
2025-08-31 00:45:31,761 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-31 00:45:31,761 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:45:31,803 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:31,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:31,805 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:45:31,846 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:45:31,850 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93b4de590> has no local changes
2025-08-31 00:45:31,850 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:45:31,858 [ scc.git] DEBUG [detached HEAD e3e2ed9] merge master -Dorg -Ssuccess-only
2025-08-31 00:45:31,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:45:31,858 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:45:32,004 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:32,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-31 00:45:32,684 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:32,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-31 00:45:33,196 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:33,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-31 00:45:33,741 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:34,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:34,289 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:34,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:45:34,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:35,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-31 00:45:35,345 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:35,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:45:35,569 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:45:35,821 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:36,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-31 00:45:36,096 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-31 00:45:36,348 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:36,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-31 00:45:36,931 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:37,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:37,473 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:37,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:45:38,019 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:38,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-31 00:45:38,519 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:38,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:45:38,743 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-31 00:45:38,995 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:39,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-31 00:45:39,277 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-31 00:45:39,528 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:39,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-31 00:45:40,110 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:40,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:40,650 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:40,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:45:41,216 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:41,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-31 00:45:41,821 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:42,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:45:42,037 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-31 00:45:42,289 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:42,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-31 00:45:42,803 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:43,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-31 00:45:43,347 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:43,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-31 00:45:43,860 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:44,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-31 00:45:44,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:44,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-31 00:45:44,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:45,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-31 00:45:45,404 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:45,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-31 00:45:45,664 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:45:45,664 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-31 00:45:45,664 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:45,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:45,667 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:45:45,669 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:45:45,669 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:45:45,673 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:45:45,676 [ scc.git] DEBUG Already up to date.
2025-08-31 00:45:45,676 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-31 00:45:45,960 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-31 00:45:45,961 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-31 00:45:45,965 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-31 00:45:46,240 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-31 00:45:46,240 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-31 00:45:46,245 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-31 00:45:46,518 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-31 00:45:46,518 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-31 00:45:46,523 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:45:46,523 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:46,523 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:46,525 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-31 00:45:46,528 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:46,531 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-31 00:45:46,539 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:45:46,543 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-31 00:45:46,543 [ scc.git] DEBUG package.json | 2 +-
2025-08-31 00:45:46,543 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-31 00:45:46,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:46,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:46,769 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-31 00:45:46,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:46,775 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-31 00:45:46,785 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-31 00:45:46,785 [ scc.git] DEBUG Auto-merging package.json
2025-08-31 00:45:46,786 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:45:46,790 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-31 00:45:46,790 [ scc.git] DEBUG package.json | 2 +-
2025-08-31 00:45:46,790 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-31 00:45:47,021 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:47,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:47,225 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-31 00:45:47,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:47,231 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-31 00:45:47,241 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:45:47,244 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-31 00:45:47,244 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-31 00:45:47,477 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:47,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:47,681 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:45:47,723 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:47,723 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:47,726 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:45:47,766 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:45:47,771 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93b41b7d0> has no local changes
2025-08-31 00:45:47,771 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:45:47,778 [ scc.git] DEBUG [detached HEAD 1f0cb25] merge master -Dorg -Ssuccess-only
2025-08-31 00:45:47,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:45:47,778 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:45:47,933 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:48,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-31 00:45:48,167 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:45:48,167 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-31 00:45:48,167 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:48,167 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:48,170 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:45:48,172 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:45:48,172 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:45:48,175 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:45:48,178 [ scc.git] DEBUG Already up to date.
2025-08-31 00:45:48,178 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:45:48,178 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:48,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:48,181 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:45:48,222 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:48,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:48,224 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:45:48,263 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:45:48,267 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd938236050> has no local changes
2025-08-31 00:45:48,267 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:45:48,274 [ scc.git] DEBUG [detached HEAD c0d4f16] merge master -Dorg -Ssuccess-only
2025-08-31 00:45:48,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:45:48,274 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:45:48,419 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:48,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-31 00:45:48,990 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:49,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-31 00:45:49,529 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:49,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-31 00:45:50,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:50,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-31 00:45:50,582 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:50,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:51,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:51,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:45:51,620 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:51,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-31 00:45:52,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:52,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:52,650 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:52,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-31 00:45:53,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:53,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-31 00:45:53,350 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-31 00:45:53,601 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:53,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-31 00:45:53,879 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:45:53,879 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-31 00:45:53,879 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:53,880 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:53,882 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:45:53,885 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:45:53,885 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:45:53,888 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:45:53,891 [ scc.git] DEBUG Already up to date.
2025-08-31 00:45:53,891 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-31 00:45:54,174 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-31 00:45:54,174 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-31 00:45:54,178 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:45:54,178 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:54,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:54,181 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-31 00:45:54,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:54,186 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-31 00:45:54,194 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:45:54,198 [ scc.git] DEBUG setup.py | 4 +-
2025-08-31 00:45:54,198 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-31 00:45:54,198 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-31 00:45:54,198 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-31 00:45:54,200 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:54,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:54,411 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:45:54,452 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:54,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:54,455 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:45:54,495 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:45:54,499 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93b429950> has no local changes
2025-08-31 00:45:54,499 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:45:54,506 [ scc.git] DEBUG [detached HEAD afc8717] merge master -Dorg -Ssuccess-only
2025-08-31 00:45:54,506 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:45:54,506 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:45:54,663 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:54,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-31 00:45:55,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:55,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-31 00:45:55,774 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:56,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-31 00:45:56,299 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:56,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-31 00:45:56,881 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:57,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:45:57,357 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:57,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-31 00:45:57,983 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:58,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:45:58,179 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-31 00:45:58,179 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:45:58,179 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-31 00:45:58,180 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:58,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:58,183 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:45:58,185 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:45:58,185 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:45:58,188 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:45:58,191 [ scc.git] DEBUG Already up to date.
2025-08-31 00:45:58,191 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-31 00:45:58,494 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-31 00:45:58,494 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-31 00:45:58,498 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:45:58,498 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:58,498 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:58,501 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-31 00:45:58,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:58,507 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-31 00:45:58,517 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG Auto-merging setup.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-31 00:45:58,517 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-31 00:45:58,517 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-31 00:45:58,520 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-31 00:45:58,524 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-31 00:45:58,527 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:58,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:45:58,725 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-31 00:45:58,728 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-31 00:45:58,732 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#521](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
- setup.py
--conflicts
2025-08-31 00:45:58,734 [ scc.config] DEBUG Found github.token
2025-08-31 00:45:58,734 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-31 00:45:58,734 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:45:58,776 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:45:58,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:45:58,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:45:58,820 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:45:58,824 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93824d310> has no local changes
2025-08-31 00:45:58,824 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:45:58,831 [ scc.git] DEBUG [detached HEAD ee05799] merge master -Dorg -Ssuccess-only
2025-08-31 00:45:58,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:45:58,831 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:45:58,977 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:59,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-31 00:45:59,652 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:45:59,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-31 00:46:00,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:00,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-31 00:46:00,784 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:01,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:01,308 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:01,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:46:01,817 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:02,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-31 00:46:02,292 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:02,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:02,501 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-31 00:46:02,753 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:03,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-31 00:46:03,258 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:03,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-31 00:46:03,817 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:04,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-31 00:46:04,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:04,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:04,905 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:05,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:46:05,424 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:05,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-31 00:46:05,948 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:06,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-31 00:46:06,452 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:06,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-31 00:46:06,958 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:07,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-31 00:46:07,479 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:07,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-31 00:46:08,035 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:08,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:08,541 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:08,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-31 00:46:09,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:09,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:09,295 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-31 00:46:09,295 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:09,295 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-31 00:46:09,295 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:09,295 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:09,298 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:46:09,300 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:09,300 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:46:09,303 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:46:09,307 [ scc.git] DEBUG Already up to date.
2025-08-31 00:46:09,307 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-31 00:46:09,600 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-31 00:46:09,600 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-31 00:46:09,605 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-31 00:46:09,902 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-31 00:46:09,902 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-31 00:46:09,907 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:09,907 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:09,907 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:09,909 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-31 00:46:09,914 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:09,916 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-31 00:46:09,928 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:46:09,932 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-31 00:46:09,933 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-31 00:46:09,935 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-31 00:46:09,935 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-31 00:46:09,936 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-31 00:46:09,936 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-31 00:46:09,936 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-31 00:46:09,936 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-31 00:46:10,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:10,152 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-31 00:46:10,157 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:10,159 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-31 00:46:10,169 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:46:10,172 [ scc.git] DEBUG docker | 1 +
2025-08-31 00:46:10,172 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-31 00:46:10,404 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:10,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:10,628 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:10,670 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:10,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:10,673 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:10,712 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:10,716 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd9382392d0> has no local changes
2025-08-31 00:46:10,716 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:10,723 [ scc.git] DEBUG [detached HEAD bd150f7] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:10,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:10,724 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:10,880 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:11,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-31 00:46:11,101 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:11,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-31 00:46:11,102 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:11,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:11,104 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:46:11,106 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:11,106 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:46:11,109 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:46:11,112 [ scc.git] DEBUG Already up to date.
2025-08-31 00:46:11,112 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:11,112 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:11,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:11,114 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:11,154 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:11,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:11,157 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:11,196 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:11,199 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93825f390> has no local changes
2025-08-31 00:46:11,199 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:11,206 [ scc.git] DEBUG [detached HEAD 5d94f8a] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:11,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:11,206 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:11,354 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:11,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-31 00:46:11,559 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:11,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-31 00:46:11,559 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:11,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:11,561 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:46:11,564 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:11,564 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:46:11,567 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:46:11,575 [ scc.git] DEBUG Updating deab817..160d894
2025-08-31 00:46:11,811 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:12,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-31 00:46:12,320 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:12,320 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:12,320 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:12,323 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:12,363 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:12,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:12,366 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:12,404 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:12,408 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd938261510> has no local changes
2025-08-31 00:46:12,408 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:12,414 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:12,414 [ scc.git] INFO Overriding base-branch from master to main
2025-08-31 00:46:12,414 [ scc.git] DEBUG [detached HEAD 7ec9a34] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:12,415 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:12,572 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:12,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-31 00:46:13,116 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:13,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-08-31 00:46:13,854 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:14,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-08-31 00:46:14,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:14,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:14,952 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:15,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:46:15,455 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:15,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-08-31 00:46:16,010 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:16,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/cf419dd60e4884ee15050271c97a6268e6e998b8?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:16,217 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-08-31 00:46:16,469 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:16,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-08-31 00:46:17,040 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:17,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-08-31 00:46:17,521 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:17,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-31 00:46:18,071 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:18,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:18,589 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:18,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:46:19,135 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:19,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-31 00:46:19,612 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:19,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:19,838 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-31 00:46:20,090 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:20,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-31 00:46:20,659 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:20,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-31 00:46:21,145 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:21,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-31 00:46:21,712 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:22,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:22,259 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:22,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:46:22,798 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:23,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-31 00:46:23,291 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:23,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-31 00:46:23,823 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:24,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-31 00:46:24,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:24,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-31 00:46:24,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:25,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:25,350 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:25,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-31 00:46:25,820 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:26,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:26,036 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-31 00:46:26,037 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:26,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-31 00:46:26,037 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:26,037 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:26,040 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-31 00:46:26,043 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:26,043 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-31 00:46:26,046 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-31 00:46:26,049 [ scc.git] DEBUG Already up to date.
2025-08-31 00:46:26,049 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-31 00:46:26,338 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-31 00:46:26,338 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-31 00:46:26,342 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-08-31 00:46:26,619 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-31 00:46:26,619 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-08-31 00:46:26,623 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-08-31 00:46:26,912 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-31 00:46:26,912 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-08-31 00:46:26,917 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:26,917 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:26,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:26,919 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-31 00:46:26,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:26,925 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-31 00:46:26,932 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-31 00:46:26,932 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-31 00:46:26,933 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-31 00:46:26,933 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-31 00:46:26,936 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-31 00:46:26,940 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-31 00:46:26,942 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:27,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:27,138 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-31 00:46:27,141 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-31 00:46:27,144 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#521](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-31 00:46:27,147 [ scc.config] DEBUG Found github.token
2025-08-31 00:46:27,147 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-31 00:46:27,147 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-08-31 00:46:27,150 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:27,152 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-08-31 00:46:27,159 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:46:27,162 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-08-31 00:46:27,162 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-08-31 00:46:27,390 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:27,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:27,582 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-08-31 00:46:27,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:27,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-08-31 00:46:27,597 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-08-31 00:46:27,598 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:46:27,601 [ scc.git] DEBUG README.rst | 3 +
2025-08-31 00:46:27,601 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-08-31 00:46:27,601 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-08-31 00:46:27,601 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-08-31 00:46:27,601 [ scc.git] DEBUG setup.py | 5 +-
2025-08-31 00:46:27,601 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-08-31 00:46:27,601 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-08-31 00:46:27,834 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:28,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:28,024 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:28,065 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:28,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:28,067 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:28,108 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:28,112 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd9382734d0> has no local changes
2025-08-31 00:46:28,112 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:28,118 [ scc.git] DEBUG [detached HEAD 65b3a70] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:28,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:28,118 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:28,276 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:28,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-31 00:46:28,479 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:28,479 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-31 00:46:28,479 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:28,479 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:28,482 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:46:28,484 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:28,484 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:46:28,487 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:46:28,490 [ scc.git] DEBUG Already up to date.
2025-08-31 00:46:28,490 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:28,490 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:28,490 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:28,493 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:28,533 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:28,533 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:28,535 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:28,576 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:28,579 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd938247010> has no local changes
2025-08-31 00:46:28,579 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:28,586 [ scc.git] DEBUG [detached HEAD be34306] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:28,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:28,586 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:28,731 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:29,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-31 00:46:29,125 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:29,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-31 00:46:29,125 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:29,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:29,127 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:46:29,130 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:29,130 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:46:29,133 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:46:29,136 [ scc.git] DEBUG Already up to date.
2025-08-31 00:46:29,136 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:29,136 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:29,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:29,138 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:29,178 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:29,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:29,181 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:29,221 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:29,225 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93b5ce750> has no local changes
2025-08-31 00:46:29,225 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:29,231 [ scc.git] DEBUG [detached HEAD d7ae37c] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:29,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:29,232 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:29,377 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:29,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-31 00:46:29,919 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:30,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-31 00:46:30,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:30,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-31 00:46:30,922 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:31,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-31 00:46:31,460 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:31,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:31,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:32,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-31 00:46:32,527 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:32,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:32,780 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-31 00:46:32,780 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:32,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-31 00:46:32,780 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:32,780 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:32,783 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-31 00:46:32,785 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:32,785 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-31 00:46:32,788 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-31 00:46:32,791 [ scc.git] DEBUG Already up to date.
2025-08-31 00:46:32,791 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-31 00:46:33,068 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-31 00:46:33,068 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-31 00:46:33,072 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:33,072 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:33,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:33,075 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-31 00:46:33,078 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:33,080 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-31 00:46:33,089 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-31 00:46:33,089 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-31 00:46:33,090 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-31 00:46:33,090 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-31 00:46:33,093 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-31 00:46:33,098 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-31 00:46:33,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:33,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:33,300 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-31 00:46:33,303 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-31 00:46:33,306 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#521](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-31 00:46:33,308 [ scc.config] DEBUG Found github.token
2025-08-31 00:46:33,308 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-31 00:46:33,308 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:33,349 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:33,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:33,351 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:33,392 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:33,396 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93b429b50> has no local changes
2025-08-31 00:46:33,396 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:33,403 [ scc.git] DEBUG [detached HEAD 35764c2] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:33,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:33,403 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-31 00:46:33,403 [ scc.repo] DEBUG ## PRs found:
2025-08-31 00:46:33,553 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:33,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-31 00:46:34,112 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:34,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-31 00:46:34,623 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:34,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-31 00:46:35,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:35,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-31 00:46:35,686 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:35,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:36,181 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:36,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-31 00:46:36,701 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:36,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-31 00:46:37,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:37,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:37,392 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-31 00:46:37,644 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:37,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-31 00:46:38,162 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:38,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-31 00:46:38,654 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:38,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-31 00:46:39,124 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:39,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-31 00:46:39,650 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:39,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-31 00:46:40,179 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:40,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-31 00:46:40,388 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-31 00:46:40,640 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:40,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-31 00:46:41,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:41,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-31 00:46:41,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:41,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-31 00:46:42,220 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:42,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-31 00:46:42,472 [ scc.repo] DEBUG ## Branches found:
2025-08-31 00:46:42,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-31 00:46:42,472 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:42,473 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:42,475 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-31 00:46:42,478 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-31 00:46:42,478 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-31 00:46:42,481 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-31 00:46:42,492 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-31 00:46:42,723 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:43,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-31 00:46:43,350 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:43,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-31 00:46:43,777 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-31 00:46:44,081 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-31 00:46:44,081 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-31 00:46:44,085 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-31 00:46:44,365 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-31 00:46:44,365 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-31 00:46:44,369 [ scc.git] DEBUG ## Unique users: []
2025-08-31 00:46:44,369 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:44,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:44,372 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-31 00:46:44,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:44,380 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-31 00:46:44,391 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-31 00:46:44,391 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-31 00:46:44,392 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-31 00:46:44,394 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-31 00:46:44,398 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-31 00:46:44,400 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:44,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:44,603 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-31 00:46:44,609 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-31 00:46:44,613 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#521](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-31 00:46:44,615 [ scc.config] DEBUG Found github.token
2025-08-31 00:46:44,615 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-31 00:46:44,615 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-31 00:46:44,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:44,622 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-31 00:46:44,633 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-31 00:46:44,636 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-31 00:46:44,636 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-31 00:46:44,855 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:45,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:45,055 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-31 00:46:45,097 [ scc.git] DEBUG Get sha1 of %s
2025-08-31 00:46:45,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-31 00:46:45,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:45,140 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:45,144 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd9382bf290> has no local changes
2025-08-31 00:46:45,144 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:45,151 [ scc.git] DEBUG [detached HEAD e8bcbd3] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:45,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:45,151 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-31 00:46:45,231 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-31 00:46:45,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:45,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:45,509 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-31 00:46:45,511 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-31 00:46:45,756 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:45,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:45,960 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-31 00:46:45,962 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-31 00:46:46,207 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:46,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:46,399 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-31 00:46:46,401 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-31 00:46:46,646 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:46,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:46,918 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-31 00:46:47,164 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:47,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:47,392 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-31 00:46:47,394 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-31 00:46:47,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:47,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:47,854 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-31 00:46:47,856 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-31 00:46:48,102 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:48,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:48,296 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-31 00:46:48,298 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-31 00:46:48,543 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:48,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:48,730 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-31 00:46:48,732 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-31 00:46:48,977 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:49,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:49,163 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-31 00:46:49,165 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-31 00:46:49,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:49,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:49,600 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-31 00:46:49,602 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-31 00:46:49,847 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:50,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:50,052 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-31 00:46:50,054 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-31 00:46:50,299 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:50,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:50,517 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-31 00:46:50,519 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-31 00:46:50,764 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:50,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:50,970 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-31 00:46:51,216 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:51,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:51,403 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-31 00:46:51,649 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:51,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:51,860 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-31 00:46:51,863 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-31 00:46:52,108 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:52,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:52,310 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-31 00:46:52,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:52,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:52,781 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-31 00:46:53,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:53,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:53,211 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-31 00:46:53,213 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-31 00:46:53,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:53,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:53,699 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-31 00:46:53,701 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-31 00:46:53,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:54,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:54,191 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-31 00:46:54,193 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-31 00:46:54,439 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:54,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:54,636 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-31 00:46:54,638 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-31 00:46:54,882 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-31 00:46:55,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-31 00:46:55,076 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-31 00:46:55,076 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-31 00:46:55,171 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd93b5ce510> has local changes
2025-08-31 00:46:55,171 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#521 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/521/)'
2025-08-31 00:46:55,184 [ scc.git] DEBUG [detached HEAD f719fbf] merge master -Dorg -Ssuccess-only
2025-08-31 00:46:55,184 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-31 00:46:55,185 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-31 00:46:55,185 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-31 00:46:55,185 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-31 00:46:55,185 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-31 00:46:55,185 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-31 00:46:55,185 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-31 00:46:55,185 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,185 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-31 00:46:55,185 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-31 00:46:55,185 [ scc.merge] INFO
2025-08-31 00:46:55,186 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-31 00:46:55,186 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-31 00:46:55,186 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-31 00:46:55,186 [ scc.merge] INFO Previously merged:
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:46:55,186 [ scc.merge] INFO
2025-08-31 00:46:55,186 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-08-31 00:46:55,186 [ scc.merge] INFO
2025-08-31 00:46:55,186 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-31 00:46:55,186 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-31 00:46:55,186 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-31 00:46:55,186 [ scc.merge] INFO Previously merged:
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:46:55,186 [ scc.merge] INFO
2025-08-31 00:46:55,186 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-31 00:46:55,186 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-31 00:46:55,187 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-31 00:46:55,187 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,187 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-31 00:46:55,187 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-31 00:46:55,187 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-31 00:46:55,187 [ scc.merge] INFO Previously merged:
2025-08-31 00:46:55,187 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:46:55,187 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-31 00:46:55,188 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-31 00:46:55,188 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-31 00:46:55,188 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-31 00:46:55,188 [ scc.merge] INFO Previously merged:
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-31 00:46:55,188 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-31 00:46:55,188 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-31 00:46:55,188 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-31 00:46:55,188 [ scc.merge] INFO
2025-08-31 00:46:55,188 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-31 00:46:55,189 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-31 00:46:55,189 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-31 00:46:55,189 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-31 00:46:55,189 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-31 00:46:55,189 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-31 00:46:55,189 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-31 00:46:55,189 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-31 00:46:55,189 [ scc.merge] INFO Updating deab817..160d894
2025-08-31 00:46:55,189 [ scc.merge] INFO Previously merged:
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO
2025-08-31 00:46:55,189 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-31 00:46:55,189 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,189 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-31 00:46:55,190 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-31 00:46:55,190 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-31 00:46:55,190 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-31 00:46:55,190 [ scc.merge] INFO Already up to date.
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Repository: ome/scripts
2025-08-31 00:46:55,190 [ scc.merge] INFO Excluded PRs:
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-31 00:46:55,190 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-31 00:46:55,190 [ scc.merge] INFO Previously merged:
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Merged PRs:
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-31 00:46:55,190 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-31 00:46:55,190 [ scc.merge] INFO
2025-08-31 00:46:55,190 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-31 00:46:55,191 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,193 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-31 00:46:55,193 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,195 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,195 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-31 00:46:55,195 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,198 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,198 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-31 00:46:55,198 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-31 00:46:55,200 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-31 00:46:55,203 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,205 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,205 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-31 00:46:55,205 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-31 00:46:55,207 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-31 00:46:55,210 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-31 00:46:55,212 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-31 00:46:55,214 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-31 00:46:55,216 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-31 00:46:55,219 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-31 00:46:55,221 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-31 00:46:55,223 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-31 00:46:55,225 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-31 00:46:55,228 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-31 00:46:55,230 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-31 00:46:55,232 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-31 00:46:55,235 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-31 00:46:55,237 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-31 00:46:55,239 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-31 00:46:55,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-31 00:46:55,242 [ scc.git] DEBUG Calling 'git remote'
2025-08-31 00:46:55,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 291c02f] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD b103953] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-31 00:47:45,280 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-31 00:47:55,657 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-31 00:47:58,391 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-31 00:48:03,715 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-31 00:48:43,292 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
