Console Output
Skipping 172 KB..
Full Logurllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-03-04 00:46:38,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:46:38,095 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:46:38,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-03-04 00:46:39,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-03-04 00:46:39,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:46:40,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-03-04 00:46:40,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:46:40,419 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:46:40,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-03-04 00:46:41,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-03-04 00:46:41,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-03-04 00:46:42,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:46:42,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-03-04 00:46:43,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:46:43,393 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-03-04 00:46:43,394 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:46:43,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-03-04 00:46:43,394 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:46:43,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:43,396 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:46:43,399 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:46:43,399 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:46:43,401 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:46:43,404 [ scc.git] DEBUG Already up to date.
2026-03-04 00:46:43,404 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-03-04 00:46:43,679 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-03-04 00:46:43,679 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-03-04 00:46:43,682 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-03-04 00:46:43,960 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-03-04 00:46:43,960 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-03-04 00:46:43,964 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-03-04 00:46:44,220 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-03-04 00:46:44,220 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-03-04 00:46:44,224 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:46:44,224 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:46:44,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:44,226 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-03-04 00:46:44,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:44,232 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-03-04 00:46:44,240 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:46:44,243 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-03-04 00:46:44,243 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-03-04 00:46:44,243 [ scc.git] DEBUG requirements.txt | 2 +-
2026-03-04 00:46:44,243 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-03-04 00:46:44,243 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-03-04 00:46:44,243 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-03-04 00:46:44,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:46:44,394 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-03-04 00:46:44,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:44,398 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-03-04 00:46:44,405 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:46:44,408 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:46:44,408 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:46:44,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:46:44,793 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-03-04 00:46:44,796 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:44,798 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-03-04 00:46:44,862 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-03-04 00:46:44,862 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-03-04 00:46:44,862 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-04 00:46:44,862 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-04 00:46:44,865 [ scc.git] DEBUG Calling 'git reset --hard aeacaa59d8632b9b5feb8220468d025ed6c8d709'
2026-03-04 00:46:44,869 [ scc.git] DEBUG HEAD is now at aeacaa5 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-03-04 00:46:45,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:46:45,205 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-03-04 00:46:45,208 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-03-04 00:46:45,211 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#78](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-03-04 00:46:45,213 [ scc.config] DEBUG Found github.token
2026-03-04 00:46:45,213 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-03-04 00:46:45,213 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:46:45,249 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:46:45,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:45,251 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:46:45,286 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:46:45,289 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0eb73290> has no local changes
2026-03-04 00:46:45,290 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:46:45,295 [ scc.git] DEBUG [detached HEAD bda2e78] merge master -Dorg -Ssuccess-only
2026-03-04 00:46:45,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:46:45,296 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:46:45,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-03-04 00:46:46,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-03-04 00:46:46,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-03-04 00:46:47,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-03-04 00:46:47,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:46:48,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-03-04 00:46:48,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:46:48,698 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-03-04 00:46:49,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-03-04 00:46:49,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-03-04 00:46:50,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-03-04 00:46:50,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:46:51,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-03-04 00:46:51,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:46:51,613 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-03-04 00:46:52,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-03-04 00:46:52,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-03-04 00:46:53,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-03-04 00:46:53,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:46:54,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-03-04 00:46:54,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:46:54,665 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-03-04 00:46:54,665 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:46:54,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-03-04 00:46:54,666 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:46:54,666 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:54,668 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:46:54,671 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:46:54,671 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:46:54,673 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:46:54,679 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-03-04 00:46:55,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-03-04 00:46:55,369 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-03-04 00:46:55,769 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-03-04 00:46:55,769 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-03-04 00:46:55,773 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-03-04 00:46:56,129 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-03-04 00:46:56,129 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-03-04 00:46:56,133 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-03-04 00:46:56,386 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-03-04 00:46:56,386 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-03-04 00:46:56,389 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:46:56,390 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:46:56,390 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:56,392 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-03-04 00:46:56,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:56,398 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-03-04 00:46:56,411 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-03-04 00:46:56,411 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-03-04 00:46:56,411 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-03-04 00:46:56,411 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-03-04 00:46:56,411 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-04 00:46:56,412 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-04 00:46:56,414 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-04 00:46:56,418 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-03-04 00:46:56,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:46:56,558 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-03-04 00:46:56,562 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-04 00:46:56,565 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#78](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-03-04 00:46:56,567 [ scc.config] DEBUG Found github.token
2026-03-04 00:46:56,567 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-03-04 00:46:56,567 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-03-04 00:46:56,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:56,573 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-03-04 00:46:56,587 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-03-04 00:46:56,587 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-03-04 00:46:56,587 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-03-04 00:46:56,588 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-04 00:46:56,588 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-04 00:46:56,590 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-04 00:46:56,595 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-03-04 00:46:56,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:46:56,942 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-03-04 00:46:56,945 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-04 00:46:56,948 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#78](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-03-04 00:46:56,950 [ scc.config] DEBUG Found github.token
2026-03-04 00:46:56,950 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-03-04 00:46:56,950 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-03-04 00:46:56,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:56,954 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-03-04 00:46:56,962 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:46:56,966 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-03-04 00:46:56,966 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-03-04 00:46:57,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:46:57,339 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:46:57,375 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:46:57,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:46:57,378 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:46:57,415 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:46:57,419 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0eb5ea10> has no local changes
2026-03-04 00:46:57,419 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:46:57,424 [ scc.git] DEBUG [detached HEAD 4a8679b] merge master -Dorg -Ssuccess-only
2026-03-04 00:46:57,424 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:46:57,424 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:46:57,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-03-04 00:46:58,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-03-04 00:46:59,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-03-04 00:46:59,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:00,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:00,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-03-04 00:47:01,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:01,203 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:47:01,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-03-04 00:47:01,934 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:02,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-03-04 00:47:02,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:03,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:04,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-03-04 00:47:04,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:04,558 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-03-04 00:47:05,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-03-04 00:47:05,097 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:05,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-03-04 00:47:06,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:06,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:07,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-03-04 00:47:07,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:07,644 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-03-04 00:47:08,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-03-04 00:47:08,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-03-04 00:47:09,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-03-04 00:47:09,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-03-04 00:47:10,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-03-04 00:47:10,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-03-04 00:47:11,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-03-04 00:47:11,013 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:11,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-03-04 00:47:11,014 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:11,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:11,016 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:11,018 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:11,018 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:11,021 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:11,024 [ scc.git] DEBUG Already up to date.
2026-03-04 00:47:11,024 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-03-04 00:47:11,406 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-03-04 00:47:11,406 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-03-04 00:47:11,410 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-03-04 00:47:11,839 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-03-04 00:47:11,839 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-03-04 00:47:11,843 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-03-04 00:47:12,180 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-03-04 00:47:12,180 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-03-04 00:47:12,184 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:12,184 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:12,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:12,187 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-03-04 00:47:12,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:12,191 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-03-04 00:47:12,199 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:12,202 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-03-04 00:47:12,202 [ scc.git] DEBUG package.json | 2 +-
2026-03-04 00:47:12,202 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-03-04 00:47:12,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:12,339 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-03-04 00:47:12,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:12,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-03-04 00:47:12,353 [ scc.git] DEBUG Auto-merging package-lock.json
2026-03-04 00:47:12,353 [ scc.git] DEBUG Auto-merging package.json
2026-03-04 00:47:12,353 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:12,356 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-03-04 00:47:12,356 [ scc.git] DEBUG package.json | 2 +-
2026-03-04 00:47:12,356 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-03-04 00:47:12,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:12,736 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-03-04 00:47:12,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:12,741 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-03-04 00:47:12,749 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:12,752 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:47:12,752 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:47:13,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:13,135 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:13,172 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:13,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:13,174 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:13,210 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:13,214 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0eba81d0> has no local changes
2026-03-04 00:47:13,214 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:13,220 [ scc.git] DEBUG [detached HEAD 254a9bd] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:13,220 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:13,220 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:13,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-03-04 00:47:14,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-03-04 00:47:14,097 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:14,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-03-04 00:47:15,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:15,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:16,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-03-04 00:47:16,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:16,673 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:47:16,673 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:16,673 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-03-04 00:47:16,673 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:16,673 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:16,676 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:16,678 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:16,678 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:16,681 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:16,684 [ scc.git] DEBUG Already up to date.
2026-03-04 00:47:16,684 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-03-04 00:47:17,089 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-03-04 00:47:17,089 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-03-04 00:47:17,093 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:17,093 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:17,093 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:17,096 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-03-04 00:47:17,098 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:17,101 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-03-04 00:47:17,107 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:17,109 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:47:17,109 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:47:17,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:17,250 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:17,286 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:17,286 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:17,288 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:17,323 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:17,325 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0fd92c50> has no local changes
2026-03-04 00:47:17,326 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:17,331 [ scc.git] DEBUG [detached HEAD 95ab408] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:17,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:17,331 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:17,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-03-04 00:47:18,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-03-04 00:47:18,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34/comments HTTP/1.1" 200 None
2026-03-04 00:47:18,743 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:19,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-03-04 00:47:19,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:20,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:20,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-03-04 00:47:21,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:21,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-03-04 00:47:22,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-03-04 00:47:22,169 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:47:22,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-03-04 00:47:22,696 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:22,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-03-04 00:47:22,696 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:22,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:22,698 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:22,701 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:22,701 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:22,703 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:22,711 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-03-04 00:47:23,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-03-04 00:47:24,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-03-04 00:47:24,227 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-03-04 00:47:24,622 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-03-04 00:47:24,622 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-03-04 00:47:24,625 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:24,626 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:24,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:24,628 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-03-04 00:47:24,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:24,633 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-03-04 00:47:24,781 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-03-04 00:47:24,781 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-03-04 00:47:24,782 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-04 00:47:24,782 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-04 00:47:24,784 [ scc.git] DEBUG Calling 'git reset --hard fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
2026-03-04 00:47:24,788 [ scc.git] DEBUG HEAD is now at fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0
2026-03-04 00:47:24,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:24,934 [ scc.git] DEBUG Calling 'git merge-base fc9ff96901ce7b92e3ba51327ba7ba64fff76959 149bb248277256d589ea0db597c04739e8134301'
2026-03-04 00:47:24,937 [ scc.git] DEBUG Calling 'git diff --name-only bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9..fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
2026-03-04 00:47:24,939 [ scc.git] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#78](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/consoleText) for more details.
Possible conflicts:
- Upstream changes
- .github/workflows/publish_pypi.yml
--conflicts
2026-03-04 00:47:24,942 [ scc.config] DEBUG Found github.token
2026-03-04 00:47:24,942 [ scc.git] DEBUG Not adding comment to issue #34, already --conflicts.
2026-03-04 00:47:24,942 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:24,978 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:24,978 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:24,980 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:25,015 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:25,018 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0fd3bf50> has no local changes
2026-03-04 00:47:25,018 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Conflicting PRs (not included):
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:25,024 [ scc.git] DEBUG [detached HEAD 75f8177] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:25,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:25,024 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:25,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-03-04 00:47:25,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-03-04 00:47:25,915 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:26,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-03-04 00:47:27,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:27,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:28,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-03-04 00:47:28,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:28,536 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:47:29,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-03-04 00:47:29,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-03-04 00:47:30,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-03-04 00:47:30,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:31,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-03-04 00:47:31,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:31,437 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-03-04 00:47:31,437 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:31,437 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-03-04 00:47:31,437 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:31,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:31,440 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:31,442 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:31,442 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:31,445 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:31,447 [ scc.git] DEBUG Already up to date.
2026-03-04 00:47:31,447 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-03-04 00:47:31,830 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-03-04 00:47:31,830 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-03-04 00:47:31,835 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-03-04 00:47:32,096 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-03-04 00:47:32,096 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-03-04 00:47:32,101 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:32,101 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:32,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:32,103 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-03-04 00:47:32,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:32,108 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-03-04 00:47:32,215 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG Auto-merging setup.py
2026-03-04 00:47:32,215 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-03-04 00:47:32,216 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-04 00:47:32,216 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-04 00:47:32,218 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-03-04 00:47:32,222 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-03-04 00:47:32,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:32,366 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-03-04 00:47:32,369 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-03-04 00:47:32,372 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#78](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/views.py
--conflicts
2026-03-04 00:47:32,374 [ scc.config] DEBUG Found github.token
2026-03-04 00:47:32,374 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-03-04 00:47:32,374 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-03-04 00:47:32,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:32,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-03-04 00:47:32,385 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:32,387 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:47:32,387 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:47:32,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:32,758 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:32,795 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:32,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:32,797 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:32,833 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:32,836 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0ebf5b90> has no local changes
2026-03-04 00:47:32,836 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:32,842 [ scc.git] DEBUG [detached HEAD a9c1b2b] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:32,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:32,842 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:33,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-03-04 00:47:33,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-03-04 00:47:34,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-03-04 00:47:34,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-03-04 00:47:35,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-03-04 00:47:35,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:36,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-03-04 00:47:36,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:36,816 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-03-04 00:47:36,816 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:36,816 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-03-04 00:47:36,816 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:36,816 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:36,819 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:36,821 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:36,821 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:36,824 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:36,830 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-03-04 00:47:37,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-03-04 00:47:38,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-03-04 00:47:38,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-03-04 00:47:39,019 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-03-04 00:47:39,485 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-03-04 00:47:39,485 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-03-04 00:47:39,489 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:39,489 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:39,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:39,492 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-03-04 00:47:39,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:39,497 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-03-04 00:47:39,504 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-03-04 00:47:39,505 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:39,508 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-03-04 00:47:39,508 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-03-04 00:47:39,508 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-03-04 00:47:39,508 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-03-04 00:47:39,508 [ scc.git] DEBUG ms/test | 2 ++
2026-03-04 00:47:39,508 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-03-04 00:47:39,508 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-03-04 00:47:39,508 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-03-04 00:47:39,508 [ scc.git] DEBUG create mode 100755 ms/test
2026-03-04 00:47:39,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:39,675 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:39,712 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:39,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:39,714 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:39,753 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:39,756 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0ebb1d10> has no local changes
2026-03-04 00:47:39,756 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:39,762 [ scc.git] DEBUG [detached HEAD 1ccc5a5] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:39,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:39,763 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:40,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-03-04 00:47:40,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-03-04 00:47:40,673 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:41,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-03-04 00:47:42,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:42,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:43,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-03-04 00:47:43,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:43,499 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:47:43,499 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:43,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-03-04 00:47:43,499 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:43,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:43,501 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:43,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:43,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:43,506 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:43,509 [ scc.git] DEBUG Already up to date.
2026-03-04 00:47:43,509 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-03-04 00:47:43,791 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-03-04 00:47:43,791 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-03-04 00:47:43,795 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:43,795 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:43,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:43,797 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-03-04 00:47:43,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:43,802 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-03-04 00:47:43,808 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:43,810 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:47:43,810 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:47:43,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:43,942 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:43,978 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:43,978 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:43,980 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:44,016 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:44,018 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0eb9da50> has no local changes
2026-03-04 00:47:44,018 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:44,024 [ scc.git] DEBUG [detached HEAD 71252dd] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:44,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:44,024 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:44,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-03-04 00:47:44,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-03-04 00:47:44,987 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:47:45,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-03-04 00:47:46,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:46,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:47,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-03-04 00:47:47,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:47,514 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:47:47,514 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:47,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-03-04 00:47:47,514 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:47,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:47,517 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:47:47,519 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:47,519 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:47:47,522 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:47:47,529 [ scc.git] DEBUG Updating deab817..160d894
2026-03-04 00:47:48,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-03-04 00:47:48,253 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-03-04 00:47:48,530 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-03-04 00:47:48,530 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-03-04 00:47:48,535 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:48,535 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:48,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:48,537 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-03-04 00:47:48,540 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:48,542 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-03-04 00:47:48,548 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:48,550 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:47:48,550 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:47:48,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:48,696 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:48,733 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:48,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:48,735 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:48,772 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:48,775 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0eb94150> has no local changes
2026-03-04 00:47:48,775 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:48,781 [ scc.git] DEBUG [detached HEAD 592e35b] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:48,781 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:48,781 [ scc.git] INFO Overriding base-branch from master to main
2026-03-04 00:47:48,781 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:49,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-03-04 00:47:49,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-03-04 00:47:50,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-03-04 00:47:50,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-03-04 00:47:51,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:51,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:47:52,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-03-04 00:47:52,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:52,893 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-03-04 00:47:53,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-03-04 00:47:53,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-03-04 00:47:54,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-03-04 00:47:54,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-03-04 00:47:55,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:47:55,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-03-04 00:47:56,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:47:56,278 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-03-04 00:47:56,278 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:47:56,278 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-03-04 00:47:56,278 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:56,278 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:56,281 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-03-04 00:47:56,283 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:47:56,283 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-03-04 00:47:56,286 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-03-04 00:47:56,293 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-03-04 00:47:56,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-03-04 00:47:57,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-03-04 00:47:57,773 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-03-04 00:47:58,053 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-03-04 00:47:58,053 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-03-04 00:47:58,057 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-03-04 00:47:58,695 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-03-04 00:47:58,695 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-03-04 00:47:58,699 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:47:58,699 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:58,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:58,702 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-03-04 00:47:58,705 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:58,707 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-03-04 00:47:58,717 [ scc.git] DEBUG Auto-merging README.rst
2026-03-04 00:47:58,717 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-03-04 00:47:58,717 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-03-04 00:47:58,717 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-03-04 00:47:58,717 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-04 00:47:58,717 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-04 00:47:58,720 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-03-04 00:47:58,723 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-03-04 00:47:58,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:58,861 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-03-04 00:47:58,864 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-03-04 00:47:58,866 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#78](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-03-04 00:47:58,868 [ scc.config] DEBUG Found github.token
2026-03-04 00:47:58,868 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-03-04 00:47:58,868 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-03-04 00:47:58,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:58,873 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-03-04 00:47:58,881 [ scc.git] DEBUG Auto-merging README.rst
2026-03-04 00:47:58,881 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-03-04 00:47:58,882 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:47:58,885 [ scc.git] DEBUG README.rst | 3 +
2026-03-04 00:47:58,885 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-03-04 00:47:58,885 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-03-04 00:47:58,885 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-03-04 00:47:58,885 [ scc.git] DEBUG setup.py | 5 +-
2026-03-04 00:47:58,885 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-03-04 00:47:58,885 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-03-04 00:47:59,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:47:59,255 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:47:59,292 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:47:59,292 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:47:59,294 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:47:59,333 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:47:59,336 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0ebf9390> has no local changes
2026-03-04 00:47:59,336 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:47:59,341 [ scc.git] DEBUG [detached HEAD 2404cbf] merge master -Dorg -Ssuccess-only
2026-03-04 00:47:59,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:47:59,342 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:47:59,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-03-04 00:48:00,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-03-04 00:48:00,412 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:48:01,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-03-04 00:48:01,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:48:02,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:48:02,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-03-04 00:48:02,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:48:02,993 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:02,993 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:48:02,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-03-04 00:48:02,993 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:02,993 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:02,996 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:48:02,998 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:48:02,998 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:48:03,001 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:48:03,003 [ scc.git] DEBUG Already up to date.
2026-03-04 00:48:03,004 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-03-04 00:48:03,419 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-03-04 00:48:03,419 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-03-04 00:48:03,423 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:48:03,423 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:03,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:03,425 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-03-04 00:48:03,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:03,430 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-03-04 00:48:03,437 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:48:03,440 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:48:03,440 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:48:03,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:03,597 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:48:03,633 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:03,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:03,635 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:48:03,669 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:48:03,672 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0ebc7510> has no local changes
2026-03-04 00:48:03,673 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:48:03,678 [ scc.git] DEBUG [detached HEAD 19d78fb] merge master -Dorg -Ssuccess-only
2026-03-04 00:48:03,678 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:03,678 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:48:04,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-03-04 00:48:04,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-03-04 00:48:04,641 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-04 00:48:05,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-03-04 00:48:05,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-04 00:48:06,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-04 00:48:06,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-03-04 00:48:07,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-03-04 00:48:07,366 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:07,366 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:48:07,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-03-04 00:48:07,366 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:07,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:07,369 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:48:07,371 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:48:07,371 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:48:07,373 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:48:07,376 [ scc.git] DEBUG Already up to date.
2026-03-04 00:48:07,376 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-03-04 00:48:07,652 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-03-04 00:48:07,652 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-03-04 00:48:07,657 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:48:07,657 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:07,657 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:07,659 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-03-04 00:48:07,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:07,665 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-03-04 00:48:07,671 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-04 00:48:07,674 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-04 00:48:07,674 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-04 00:48:07,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:07,827 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:48:07,863 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:07,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:07,866 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:48:07,901 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:48:07,904 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0c257d10> has no local changes
2026-03-04 00:48:07,905 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:48:07,910 [ scc.git] DEBUG [detached HEAD 6cdcc69] merge master -Dorg -Ssuccess-only
2026-03-04 00:48:07,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:07,910 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:48:08,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-03-04 00:48:08,262 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:48:08,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-03-04 00:48:08,262 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:08,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:08,264 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-04 00:48:08,267 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:48:08,267 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-04 00:48:08,269 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-04 00:48:08,272 [ scc.git] DEBUG Already up to date.
2026-03-04 00:48:08,272 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:48:08,272 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:08,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:08,274 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:48:08,309 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:08,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:08,311 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:48:08,345 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:48:08,348 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0c257bd0> has no local changes
2026-03-04 00:48:08,348 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:48:08,354 [ scc.git] DEBUG [detached HEAD 042f099] merge master -Dorg -Ssuccess-only
2026-03-04 00:48:08,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:08,354 [ scc.git] INFO Overriding base-branch from master to develop
2026-03-04 00:48:08,354 [ scc.repo] DEBUG ## PRs found:
2026-03-04 00:48:08,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2
2026-03-04 00:48:08,678 [ scc.repo] DEBUG ## Branches found:
2026-03-04 00:48:08,678 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-03-04 00:48:08,679 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:08,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:08,681 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-03-04 00:48:08,683 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-04 00:48:08,683 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-03-04 00:48:08,686 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-03-04 00:48:08,697 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-03-04 00:48:09,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-03-04 00:48:10,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-03-04 00:48:10,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-03-04 00:48:11,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-03-04 00:48:12,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-03-04 00:48:12,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-03-04 00:48:13,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-03-04 00:48:13,681 [ scc.git] DEBUG ## Unique users: []
2026-03-04 00:48:13,681 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:13,681 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:13,684 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-04 00:48:13,722 [ scc.git] DEBUG Get sha1 of %s
2026-03-04 00:48:13,722 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-04 00:48:13,724 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:48:13,760 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:48:13,764 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0c27ea10> has no local changes
2026-03-04 00:48:13,764 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:48:13,770 [ scc.git] DEBUG [detached HEAD 85fce05] merge master -Dorg -Ssuccess-only
2026-03-04 00:48:13,770 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:13,770 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-04 00:48:13,840 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-03-04 00:48:14,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:14,074 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-03-04 00:48:14,076 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-03-04 00:48:14,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:14,470 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-03-04 00:48:14,472 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-03-04 00:48:14,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:14,873 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-03-04 00:48:14,875 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-03-04 00:48:15,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:15,288 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-03-04 00:48:15,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:15,675 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-03-04 00:48:15,677 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-03-04 00:48:16,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:16,063 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-03-04 00:48:16,064 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-03-04 00:48:16,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:16,445 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-03-04 00:48:16,446 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-03-04 00:48:16,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:16,851 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-03-04 00:48:16,854 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-03-04 00:48:17,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:17,242 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-03-04 00:48:17,243 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-03-04 00:48:17,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:17,640 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-03-04 00:48:17,642 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-03-04 00:48:18,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:18,047 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-03-04 00:48:18,049 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-03-04 00:48:18,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:18,448 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-03-04 00:48:18,450 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-03-04 00:48:18,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:18,847 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-03-04 00:48:19,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:19,236 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-03-04 00:48:19,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:19,653 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-03-04 00:48:19,654 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-03-04 00:48:20,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:20,056 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-03-04 00:48:20,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:20,449 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-03-04 00:48:20,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:20,836 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-03-04 00:48:20,838 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-03-04 00:48:21,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:21,251 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-03-04 00:48:21,253 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-03-04 00:48:21,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:21,650 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-03-04 00:48:21,652 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-03-04 00:48:22,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:22,116 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-03-04 00:48:22,118 [ scc.config] DEBUG Found submodule.scripts.url
2026-03-04 00:48:22,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-04 00:48:22,514 [ scc.config] DEBUG Found submodule.scripts.branch
2026-03-04 00:48:22,514 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-04 00:48:22,591 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdf0fdb6810> has local changes
2026-03-04 00:48:22,591 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 669 will-moore 'Standalone python script' (stage: draft)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..186921ea
Previously merged:
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
Conflicting PRs (not included):
- PR 666 will-moore 'Standalone app'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Conflicting PRs (not included):
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#78 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/78/)'
2026-03-04 00:48:22,602 [ scc.git] DEBUG [detached HEAD 3a9d235] merge master -Dorg -Ssuccess-only
2026-03-04 00:48:22,602 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-03-04 00:48:22,603 [ scc.merge] INFO Repository: ome/omero-plugins
2026-03-04 00:48:22,603 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-03-04 00:48:22,603 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-03-04 00:48:22,603 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-03-04 00:48:22,603 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-03-04 00:48:22,603 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-03-04 00:48:22,603 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-03-04 00:48:22,603 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-03-04 00:48:22,603 [ scc.merge] INFO
2026-03-04 00:48:22,603 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-03-04 00:48:22,603 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-03-04 00:48:22,603 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-03-04 00:48:22,604 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-03-04 00:48:22,604 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:48:22,604 [ scc.merge] INFO
2026-03-04 00:48:22,604 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-03-04 00:48:22,604 [ scc.merge] INFO
2026-03-04 00:48:22,604 [ scc.merge] INFO Repository: ome/omero-figure
2026-03-04 00:48:22,604 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' (stage: draft)
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-03-04 00:48:22,604 [ scc.merge] INFO Updating 9cc36cde..186921ea
2026-03-04 00:48:22,604 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-03-04 00:48:22,604 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-03-04 00:48:22,605 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Repository: ome/omero-gallery
2026-03-04 00:48:22,605 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-03-04 00:48:22,605 [ scc.merge] INFO
2026-03-04 00:48:22,605 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-03-04 00:48:22,605 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-03-04 00:48:22,605 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-03-04 00:48:22,606 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-03-04 00:48:22,606 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Repository: ome/omero-mapr
2026-03-04 00:48:22,606 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-03-04 00:48:22,606 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Repository: ome/omero-metadata
2026-03-04 00:48:22,606 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-03-04 00:48:22,606 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-03-04 00:48:22,606 [ scc.merge] INFO
2026-03-04 00:48:22,606 [ scc.merge] INFO Repository: ome/omero-parade
2026-03-04 00:48:22,606 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-03-04 00:48:22,606 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-03-04 00:48:22,606 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-03-04 00:48:22,607 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Repository: ome/omero-rois
2026-03-04 00:48:22,607 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-03-04 00:48:22,607 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-03-04 00:48:22,607 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Repository: ome/omero-signup
2026-03-04 00:48:22,607 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-03-04 00:48:22,607 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-03-04 00:48:22,607 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-03-04 00:48:22,607 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,607 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,607 [ scc.merge] INFO Repository: ome/omero-upload
2026-03-04 00:48:22,607 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,607 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-03-04 00:48:22,608 [ scc.merge] INFO Updating deab817..160d894
2026-03-04 00:48:22,608 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-03-04 00:48:22,608 [ scc.merge] INFO Excluded PRs:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-03-04 00:48:22,608 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-03-04 00:48:22,608 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-03-04 00:48:22,608 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-03-04 00:48:22,608 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Merged PRs:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-03-04 00:48:22,608 [ scc.merge] INFO Already up to date.
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO
2026-03-04 00:48:22,608 [ scc.merge] INFO Repository: ome/scripts
2026-03-04 00:48:22,608 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-03-04 00:48:22,608 [ scc.merge] INFO Previously merged:
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-03-04 00:48:22,608 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-03-04 00:48:22,609 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-03-04 00:48:22,609 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-03-04 00:48:22,609 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-03-04 00:48:22,609 [ scc.merge] INFO
2026-03-04 00:48:22,609 [ scc.merge] INFO
2026-03-04 00:48:22,609 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-03-04 00:48:22,609 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-03-04 00:48:22,611 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-03-04 00:48:22,613 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-03-04 00:48:22,615 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-03-04 00:48:22,617 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-03-04 00:48:22,619 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-03-04 00:48:22,621 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-03-04 00:48:22,623 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-03-04 00:48:22,625 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-03-04 00:48:22,628 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-03-04 00:48:22,630 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-03-04 00:48:22,632 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-03-04 00:48:22,634 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-03-04 00:48:22,636 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-03-04 00:48:22,638 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-03-04 00:48:22,640 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-03-04 00:48:22,642 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-03-04 00:48:22,644 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-03-04 00:48:22,646 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-03-04 00:48:22,648 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,650 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,650 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-03-04 00:48:22,650 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,652 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,652 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-03-04 00:48:22,652 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-04 00:48:22,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-03-04 00:48:22,655 [ scc.git] DEBUG Calling 'git remote'
2026-03-04 00:48:22,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD d5ee732] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 658c739] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-03-04 00:49:08,919 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-03-04 00:49:18,044 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-03-04 00:49:20,376 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-03-04 00:49:25,037 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-03-04 00:50:04,359 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
