Skipping 220 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2026-09-20 23:43:54,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-09-20 23:43:55,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:43:55,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-09-20 23:43:55,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:43:55,972 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-09-20 23:43:56,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-09-20 23:43:56,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-09-20 23:43:57,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-09-20 23:43:58,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:43:58,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-09-20 23:43:58,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:43:58,974 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-09-20 23:43:59,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-09-20 23:43:59,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-09-20 23:44:00,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:00,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:01,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:01,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:01,945 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-09-20 23:44:01,945 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:01,945 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-09-20 23:44:01,946 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:01,946 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:01,972 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:01,997 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:01,997 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:02,127 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:02,459 [ scc.git] DEBUG Updating 3cd120c..6a653e4
2026-09-20 23:44:03,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None
2026-09-20 23:44:03,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None
2026-09-20 23:44:04,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-09-20 23:44:04,800 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-09-20 23:44:05,527 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-09-20 23:44:05,528 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-09-20 23:44:05,553 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-09-20 23:44:06,324 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-09-20 23:44:06,324 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-09-20 23:44:06,355 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-09-20 23:44:06,853 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-09-20 23:44:06,853 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-09-20 23:44:06,884 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:06,884 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:06,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:06,898 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-09-20 23:44:06,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:06,968 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-09-20 23:44:07,255 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-09-20 23:44:07,255 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-09-20 23:44:07,255 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-09-20 23:44:07,255 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-09-20 23:44:07,277 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-20 23:44:07,278 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-20 23:44:07,302 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-20 23:44:07,460 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-09-20 23:44:07,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:07,660 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-09-20 23:44:07,717 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-20 23:44:07,752 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#80](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-09-20 23:44:07,767 [ scc.config] DEBUG Found github.token
2026-09-20 23:44:07,767 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-09-20 23:44:07,767 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-09-20 23:44:07,835 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:07,848 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-09-20 23:44:08,162 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-09-20 23:44:08,162 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-09-20 23:44:08,162 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-09-20 23:44:08,194 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-20 23:44:08,195 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-20 23:44:08,231 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-20 23:44:08,405 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-09-20 23:44:08,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:08,587 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7'
2026-09-20 23:44:08,651 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-20 23:44:08,682 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#80](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-09-20 23:44:08,694 [ scc.config] DEBUG Found github.token
2026-09-20 23:44:08,694 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-09-20 23:44:08,694 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-09-20 23:44:08,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:08,756 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-09-20 23:44:09,001 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:09,077 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-09-20 23:44:09,078 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-09-20 23:44:09,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:09,253 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:09,392 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:09,392 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:09,410 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:09,538 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:09,601 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1618d0> has no local changes
2026-09-20 23:44:09,601 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:09,725 [ scc.git] DEBUG [detached HEAD 0466167] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:09,726 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:09,726 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:10,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-09-20 23:44:11,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-09-20 23:44:11,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:12,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:12,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:13,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:13,158 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:44:13,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-09-20 23:44:13,871 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:44:14,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:15,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:15,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:15,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:15,971 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-09-20 23:44:16,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-09-20 23:44:16,477 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:44:17,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:17,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:18,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:18,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:18,661 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-09-20 23:44:19,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-09-20 23:44:19,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-09-20 23:44:20,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-09-20 23:44:20,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-09-20 23:44:21,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-09-20 23:44:21,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-09-20 23:44:22,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-09-20 23:44:22,309 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:22,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-09-20 23:44:22,310 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:22,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:22,334 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:22,357 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:22,357 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:22,389 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:22,460 [ scc.git] DEBUG Already up to date.
2026-09-20 23:44:22,460 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-09-20 23:44:22,932 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-09-20 23:44:22,932 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-09-20 23:44:22,959 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-09-20 23:44:23,394 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-09-20 23:44:23,394 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-09-20 23:44:23,420 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-09-20 23:44:23,892 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-09-20 23:44:23,892 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-09-20 23:44:23,919 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:23,919 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:23,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:23,934 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-09-20 23:44:23,957 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:23,971 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-09-20 23:44:24,204 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:24,278 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-09-20 23:44:24,278 [ scc.git] DEBUG package.json | 2 +-
2026-09-20 23:44:24,278 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-09-20 23:44:24,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:24,461 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-09-20 23:44:24,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:24,511 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-09-20 23:44:24,699 [ scc.git] DEBUG Auto-merging package-lock.json
2026-09-20 23:44:24,700 [ scc.git] DEBUG Auto-merging package.json
2026-09-20 23:44:24,776 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:24,850 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-09-20 23:44:24,850 [ scc.git] DEBUG package.json | 2 +-
2026-09-20 23:44:24,850 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-09-20 23:44:25,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:25,019 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-09-20 23:44:25,060 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:25,075 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-09-20 23:44:25,311 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:25,389 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:44:25,389 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:44:25,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:25,565 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:25,702 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:25,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:25,719 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:25,826 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:25,898 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1bbb50> has no local changes
2026-09-20 23:44:25,898 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:26,047 [ scc.git] DEBUG [detached HEAD 907c467] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:26,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:26,049 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:26,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-09-20 23:44:26,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-09-20 23:44:26,842 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:44:27,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:27,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:28,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:44:28,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:29,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:29,440 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:44:29,440 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:29,440 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-09-20 23:44:29,441 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:29,441 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:29,469 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:29,490 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:29,490 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:29,510 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:29,582 [ scc.git] DEBUG Already up to date.
2026-09-20 23:44:29,582 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-09-20 23:44:30,076 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-09-20 23:44:30,076 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-09-20 23:44:30,103 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:30,103 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:30,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:30,118 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-09-20 23:44:30,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:30,159 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-09-20 23:44:30,360 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:30,424 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:44:30,424 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:44:30,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:30,605 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:30,744 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:30,744 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:30,759 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:30,885 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:30,945 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1e0790> has no local changes
2026-09-20 23:44:30,945 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:31,090 [ scc.git] DEBUG [detached HEAD a891706] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:31,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:31,093 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:31,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-09-20 23:44:31,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-09-20 23:44:31,861 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:31,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-09-20 23:44:31,863 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:31,863 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:31,889 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:31,913 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:31,913 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:31,970 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:32,226 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-09-20 23:44:32,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-09-20 23:44:33,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-09-20 23:44:33,620 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:33,620 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:33,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:33,641 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:33,769 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:33,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:33,785 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:33,904 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:33,965 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee19eb90> has no local changes
2026-09-20 23:44:33,965 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:34,085 [ scc.git] DEBUG [detached HEAD 0e1c92a] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:34,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:34,087 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:34,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-09-20 23:44:34,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-09-20 23:44:34,954 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:44:35,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:36,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:36,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:44:37,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:37,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:37,548 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:44:38,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-09-20 23:44:38,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-09-20 23:44:39,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:39,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:40,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:40,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:40,662 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-09-20 23:44:40,662 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:40,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-09-20 23:44:40,663 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:40,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:40,685 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:40,705 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:40,705 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:40,728 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:40,788 [ scc.git] DEBUG Already up to date.
2026-09-20 23:44:40,788 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-09-20 23:44:41,430 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-09-20 23:44:41,430 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-09-20 23:44:41,458 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-09-20 23:44:41,883 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-09-20 23:44:41,883 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-09-20 23:44:41,907 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:41,907 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:41,907 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:41,921 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-09-20 23:44:41,951 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:41,963 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-09-20 23:44:42,287 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-09-20 23:44:42,287 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-09-20 23:44:42,287 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-09-20 23:44:42,287 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-09-20 23:44:42,287 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-09-20 23:44:42,288 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-09-20 23:44:42,288 [ scc.git] DEBUG Auto-merging setup.py
2026-09-20 23:44:42,288 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-09-20 23:44:42,309 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-20 23:44:42,310 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-20 23:44:42,341 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-09-20 23:44:42,508 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-09-20 23:44:42,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:42,690 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-09-20 23:44:42,715 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-09-20 23:44:42,735 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#80](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- setup.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
--conflicts
2026-09-20 23:44:42,746 [ scc.config] DEBUG Found github.token
2026-09-20 23:44:42,746 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-09-20 23:44:42,746 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-09-20 23:44:42,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:42,778 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-09-20 23:44:42,953 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:43,010 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:44:43,010 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:44:43,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:43,174 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:43,291 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:43,291 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:43,304 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:43,424 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:43,476 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1c2f50> has no local changes
2026-09-20 23:44:43,476 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:43,603 [ scc.git] DEBUG [detached HEAD 7bab63a] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:43,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:43,604 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:43,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-09-20 23:44:44,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-09-20 23:44:44,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-09-20 23:44:45,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-09-20 23:44:46,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:46,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:47,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:47,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:47,549 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-09-20 23:44:47,549 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:47,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-09-20 23:44:47,550 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:47,550 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:47,574 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:47,594 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:47,594 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:47,617 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:47,791 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-09-20 23:44:48,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-09-20 23:44:49,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-09-20 23:44:50,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-09-20 23:44:50,233 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-09-20 23:44:50,749 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-09-20 23:44:50,749 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-09-20 23:44:50,776 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:50,776 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:50,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:50,792 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-09-20 23:44:50,825 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:50,840 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-09-20 23:44:51,037 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-09-20 23:44:51,101 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:51,177 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-09-20 23:44:51,177 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-09-20 23:44:51,177 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-09-20 23:44:51,177 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-09-20 23:44:51,177 [ scc.git] DEBUG ms/test | 2 ++
2026-09-20 23:44:51,177 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-09-20 23:44:51,177 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-09-20 23:44:51,178 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-09-20 23:44:51,178 [ scc.git] DEBUG create mode 100755 ms/test
2026-09-20 23:44:51,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:51,355 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:51,491 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:51,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:51,505 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:51,614 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:51,674 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee198750> has no local changes
2026-09-20 23:44:51,674 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:51,851 [ scc.git] DEBUG [detached HEAD c2c60ca] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:51,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:51,853 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:52,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-09-20 23:44:52,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-09-20 23:44:52,665 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:44:53,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:53,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:54,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:44:54,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:55,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:44:55,265 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:44:55,265 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:44:55,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-09-20 23:44:55,267 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:55,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:55,289 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:44:55,313 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:44:55,313 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:44:55,337 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:44:55,400 [ scc.git] DEBUG Already up to date.
2026-09-20 23:44:55,400 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-09-20 23:44:55,889 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-09-20 23:44:55,889 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-09-20 23:44:55,920 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:44:55,920 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:55,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:55,937 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-09-20 23:44:55,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:55,982 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-09-20 23:44:56,168 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:44:56,237 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:44:56,237 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:44:56,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:44:56,412 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:44:56,535 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:44:56,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:44:56,553 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:44:56,675 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:44:56,727 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1e78d0> has no local changes
2026-09-20 23:44:56,727 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:44:56,886 [ scc.git] DEBUG [detached HEAD f8db630] merge master -Dorg -Ssuccess-only
2026-09-20 23:44:56,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:44:56,888 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:44:57,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-09-20 23:44:57,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-09-20 23:44:57,683 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:44:58,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-09-20 23:44:58,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:44:59,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:44:59,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:00,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:45:00,381 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:00,381 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:45:00,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-09-20 23:45:00,382 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:00,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:00,405 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:45:00,425 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:45:00,425 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:45:00,486 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:45:00,661 [ scc.git] DEBUG Updating deab817..160d894
2026-09-20 23:45:01,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-09-20 23:45:01,214 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-09-20 23:45:01,673 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-09-20 23:45:01,673 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-09-20 23:45:01,696 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:45:01,697 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:01,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:01,710 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-09-20 23:45:01,734 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:01,747 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-09-20 23:45:01,939 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:45:02,019 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:45:02,019 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:45:02,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:02,213 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:45:02,333 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:02,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:02,350 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:02,479 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:02,532 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee19e1d0> has no local changes
2026-09-20 23:45:02,532 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:02,668 [ scc.git] DEBUG [detached HEAD a92b297] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:02,670 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:02,670 [ scc.git] INFO Overriding base-branch from master to main
2026-09-20 23:45:02,670 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:45:03,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-09-20 23:45:03,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-09-20 23:45:03,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-09-20 23:45:04,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:05,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:45:05,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:45:06,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:06,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:45:06,762 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-09-20 23:45:07,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-09-20 23:45:07,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-09-20 23:45:08,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-09-20 23:45:08,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:09,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:45:09,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:10,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:45:10,227 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-09-20 23:45:10,227 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:45:10,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-09-20 23:45:10,229 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:10,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:10,252 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-09-20 23:45:10,271 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:45:10,271 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-09-20 23:45:10,298 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-09-20 23:45:10,486 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-09-20 23:45:11,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-09-20 23:45:11,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-09-20 23:45:11,804 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-09-20 23:45:12,360 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-09-20 23:45:12,360 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-09-20 23:45:12,388 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-09-20 23:45:13,179 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-09-20 23:45:13,179 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-09-20 23:45:13,205 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:45:13,205 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:13,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:13,222 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-09-20 23:45:13,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:13,272 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-09-20 23:45:13,503 [ scc.git] DEBUG Auto-merging README.rst
2026-09-20 23:45:13,503 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-09-20 23:45:13,503 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-09-20 23:45:13,503 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-09-20 23:45:13,527 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-20 23:45:13,528 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-20 23:45:13,568 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-09-20 23:45:13,708 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-09-20 23:45:13,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:13,903 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-09-20 23:45:13,929 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-09-20 23:45:13,952 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#80](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-09-20 23:45:13,964 [ scc.config] DEBUG Found github.token
2026-09-20 23:45:13,965 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-09-20 23:45:13,965 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-09-20 23:45:14,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:14,019 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-09-20 23:45:14,223 [ scc.git] DEBUG Auto-merging README.rst
2026-09-20 23:45:14,223 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-09-20 23:45:14,283 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:45:14,353 [ scc.git] DEBUG README.rst | 3 +
2026-09-20 23:45:14,353 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-09-20 23:45:14,353 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-09-20 23:45:14,353 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-09-20 23:45:14,353 [ scc.git] DEBUG setup.py | 5 +-
2026-09-20 23:45:14,353 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-09-20 23:45:14,353 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-09-20 23:45:14,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:14,553 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:45:14,673 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:14,673 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:14,689 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:14,792 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:14,852 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee23e290> has no local changes
2026-09-20 23:45:14,852 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:14,997 [ scc.git] DEBUG [detached HEAD 246427a] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:14,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:14,998 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:45:15,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-09-20 23:45:15,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-09-20 23:45:15,793 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:45:16,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:16,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:45:17,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:45:18,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:18,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:45:18,547 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:18,547 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:45:18,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-09-20 23:45:18,548 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:18,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:18,574 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:45:18,598 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:45:18,598 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:45:18,625 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:45:18,692 [ scc.git] DEBUG Already up to date.
2026-09-20 23:45:18,692 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-09-20 23:45:19,157 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-09-20 23:45:19,157 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-09-20 23:45:19,185 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:45:19,185 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:19,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:19,199 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-09-20 23:45:19,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:19,238 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-09-20 23:45:19,411 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:45:19,473 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:45:19,473 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:45:19,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:19,652 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:45:19,773 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:19,773 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:19,787 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:19,902 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:19,960 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1c3750> has no local changes
2026-09-20 23:45:19,960 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:20,096 [ scc.git] DEBUG [detached HEAD ec8f533] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:20,098 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:20,098 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:45:20,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-09-20 23:45:20,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-09-20 23:45:20,869 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-20 23:45:21,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:22,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:45:22,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:45:23,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:23,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:45:23,625 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:23,625 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:45:23,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-09-20 23:45:23,626 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:23,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:23,654 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:45:23,677 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:45:23,677 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:45:23,708 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:45:23,773 [ scc.git] DEBUG Already up to date.
2026-09-20 23:45:23,773 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-09-20 23:45:24,240 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-09-20 23:45:24,241 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-09-20 23:45:24,270 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:45:24,270 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:24,270 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:24,304 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-09-20 23:45:24,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:24,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-09-20 23:45:24,561 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:45:24,625 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-20 23:45:24,625 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-20 23:45:24,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:24,799 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:45:24,934 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:24,934 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:24,950 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:25,073 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:25,138 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabef346e10> has no local changes
2026-09-20 23:45:25,138 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:25,292 [ scc.git] DEBUG [detached HEAD 6513b95] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:25,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:25,294 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:45:25,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-09-20 23:45:25,512 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:45:25,512 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-09-20 23:45:25,513 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:25,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:25,539 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-20 23:45:25,558 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:45:25,558 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-20 23:45:25,583 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-20 23:45:25,647 [ scc.git] DEBUG Already up to date.
2026-09-20 23:45:25,647 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:45:25,648 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:25,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:25,666 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:45:25,787 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:25,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:25,802 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:25,925 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:26,021 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabd470b850> has no local changes
2026-09-20 23:45:26,022 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:26,189 [ scc.git] DEBUG [detached HEAD 4eebdfe] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:26,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:26,192 [ scc.git] INFO Overriding base-branch from master to develop
2026-09-20 23:45:26,192 [ scc.repo] DEBUG ## PRs found:
2026-09-20 23:45:26,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-09-20 23:45:26,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-09-20 23:45:27,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:27,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-20 23:45:28,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-20 23:45:28,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-09-20 23:45:29,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-09-20 23:45:29,414 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-09-20 23:45:29,414 [ scc.repo] DEBUG ## Branches found:
2026-09-20 23:45:29,414 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-09-20 23:45:29,415 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:29,415 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:29,441 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-09-20 23:45:29,465 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-20 23:45:29,465 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-09-20 23:45:29,549 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-09-20 23:45:29,875 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-09-20 23:45:30,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-09-20 23:45:31,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-09-20 23:45:31,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-09-20 23:45:32,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-09-20 23:45:33,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-09-20 23:45:34,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-09-20 23:45:35,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-09-20 23:45:35,272 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-09-20 23:45:35,811 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-09-20 23:45:35,811 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-09-20 23:45:35,839 [ scc.git] DEBUG ## Unique users: []
2026-09-20 23:45:35,839 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:35,840 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:35,855 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-09-20 23:45:35,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:35,922 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-09-20 23:45:36,172 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-20 23:45:36,247 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-09-20 23:45:36,247 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-09-20 23:45:36,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:36,439 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-20 23:45:36,585 [ scc.git] DEBUG Get sha1 of %s
2026-09-20 23:45:36,585 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-20 23:45:36,604 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:36,724 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:36,799 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabee1a5f10> has no local changes
2026-09-20 23:45:36,799 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:36,980 [ scc.git] DEBUG [detached HEAD ff33ad2] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:36,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:36,983 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-20 23:45:37,267 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-09-20 23:45:37,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:37,508 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-09-20 23:45:37,518 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-09-20 23:45:37,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:37,941 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-09-20 23:45:37,951 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-09-20 23:45:38,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:38,375 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-09-20 23:45:38,384 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-09-20 23:45:38,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:38,809 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-09-20 23:45:39,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:39,252 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-09-20 23:45:39,260 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-09-20 23:45:39,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:39,691 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-09-20 23:45:39,700 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-09-20 23:45:40,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:40,122 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-09-20 23:45:40,131 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-09-20 23:45:40,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:40,549 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-09-20 23:45:40,560 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-09-20 23:45:40,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:40,978 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-09-20 23:45:40,987 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-09-20 23:45:41,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:41,415 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-09-20 23:45:41,424 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-09-20 23:45:41,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:41,841 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-09-20 23:45:41,854 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-09-20 23:45:42,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:42,266 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-09-20 23:45:42,274 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-09-20 23:45:42,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:42,704 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-09-20 23:45:43,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:43,139 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-09-20 23:45:43,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:43,570 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-09-20 23:45:43,578 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-09-20 23:45:43,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:44,007 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-09-20 23:45:44,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:44,423 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-09-20 23:45:44,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:44,845 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-09-20 23:45:44,853 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-09-20 23:45:45,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:45,277 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-09-20 23:45:45,285 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-09-20 23:45:45,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:45,707 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-09-20 23:45:45,714 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-09-20 23:45:46,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:46,132 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-09-20 23:45:46,141 [ scc.config] DEBUG Found submodule.scripts.url
2026-09-20 23:45:46,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-20 23:45:46,559 [ scc.config] DEBUG Found submodule.scripts.branch
2026-09-20 23:45:46,559 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-20 23:45:48,831 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fabef3f41d0> has local changes
2026-09-20 23:45:48,831 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..6c554250
Previously merged:
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/80/)'
2026-09-20 23:45:49,417 [ scc.git] DEBUG [detached HEAD 5ce3f11] merge master -Dorg -Ssuccess-only
2026-09-20 23:45:49,417 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-09-20 23:45:49,419 [ scc.merge] INFO Repository: ome/omero-plugins
2026-09-20 23:45:49,419 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,419 [ scc.merge] INFO
2026-09-20 23:45:49,419 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-09-20 23:45:49,419 [ scc.merge] INFO
2026-09-20 23:45:49,419 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-09-20 23:45:49,419 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,419 [ scc.merge] INFO
2026-09-20 23:45:49,419 [ scc.merge] INFO
2026-09-20 23:45:49,419 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-09-20 23:45:49,419 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-09-20 23:45:49,419 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,419 [ scc.merge] INFO
2026-09-20 23:45:49,419 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,419 [ scc.merge] INFO
2026-09-20 23:45:49,419 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-09-20 23:45:49,419 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-09-20 23:45:49,419 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-09-20 23:45:49,419 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-09-20 23:45:49,419 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-09-20 23:45:49,420 [ scc.merge] INFO
2026-09-20 23:45:49,420 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-09-20 23:45:49,420 [ scc.merge] INFO
2026-09-20 23:45:49,420 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-09-20 23:45:49,420 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-09-20 23:45:49,420 [ scc.merge] INFO Updating 11d3587..d5f88d8
2026-09-20 23:45:49,420 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:45:49,420 [ scc.merge] INFO
2026-09-20 23:45:49,420 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-09-20 23:45:49,420 [ scc.merge] INFO
2026-09-20 23:45:49,420 [ scc.merge] INFO Repository: ome/omero-figure
2026-09-20 23:45:49,420 [ scc.merge] INFO Updating 9cc36cde..3195c3df
2026-09-20 23:45:49,420 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-09-20 23:45:49,420 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration'
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-09-20 23:45:49,421 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Repository: ome/omero-gallery
2026-09-20 23:45:49,421 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-09-20 23:45:49,421 [ scc.merge] INFO
2026-09-20 23:45:49,421 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-09-20 23:45:49,421 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-09-20 23:45:49,421 [ scc.merge] INFO Updating 7a798cee..6c554250
2026-09-20 23:45:49,421 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-09-20 23:45:49,421 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Repository: ome/omero-mapr
2026-09-20 23:45:49,422 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
2026-09-20 23:45:49,422 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Repository: ome/omero-metadata
2026-09-20 23:45:49,422 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-09-20 23:45:49,422 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Repository: ome/omero-parade
2026-09-20 23:45:49,422 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-09-20 23:45:49,422 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-09-20 23:45:49,422 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,422 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-09-20 23:45:49,422 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,422 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: ome/omero-rois
2026-09-20 23:45:49,423 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-09-20 23:45:49,423 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-09-20 23:45:49,423 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: ome/omero-signup
2026-09-20 23:45:49,423 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-09-20 23:45:49,423 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-09-20 23:45:49,423 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-09-20 23:45:49,423 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: ome/omero-upload
2026-09-20 23:45:49,423 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-09-20 23:45:49,423 [ scc.merge] INFO Updating deab817..160d894
2026-09-20 23:45:49,423 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-09-20 23:45:49,423 [ scc.merge] INFO Excluded PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-09-20 23:45:49,423 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-09-20 23:45:49,423 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-09-20 23:45:49,423 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-09-20 23:45:49,423 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,423 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,423 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-09-20 23:45:49,423 [ scc.merge] INFO Already up to date.
2026-09-20 23:45:49,423 [ scc.merge] INFO
2026-09-20 23:45:49,424 [ scc.merge] INFO
2026-09-20 23:45:49,424 [ scc.merge] INFO Repository: ome/scripts
2026-09-20 23:45:49,424 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-09-20 23:45:49,424 [ scc.merge] INFO Previously merged:
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-09-20 23:45:49,424 [ scc.merge] INFO
2026-09-20 23:45:49,424 [ scc.merge] INFO Merged PRs:
2026-09-20 23:45:49,424 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-09-20 23:45:49,424 [ scc.merge] INFO
2026-09-20 23:45:49,424 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-09-20 23:45:49,424 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,457 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-09-20 23:45:49,457 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,475 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,475 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-09-20 23:45:49,475 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,492 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,493 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-09-20 23:45:49,493 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-09-20 23:45:49,510 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-09-20 23:45:49,527 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-09-20 23:45:49,544 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-09-20 23:45:49,559 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-09-20 23:45:49,577 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-09-20 23:45:49,593 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-09-20 23:45:49,609 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-09-20 23:45:49,626 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-09-20 23:45:49,642 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-09-20 23:45:49,656 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-09-20 23:45:49,671 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-09-20 23:45:49,699 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-09-20 23:45:49,714 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-09-20 23:45:49,729 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-09-20 23:45:49,747 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-09-20 23:45:49,764 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-09-20 23:45:49,781 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,805 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,805 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-09-20 23:45:49,805 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-20 23:45:49,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-09-20 23:45:49,824 [ scc.git] DEBUG Calling 'git remote'
2026-09-20 23:45:49,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD faa31f2] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798cee
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD d2ddf7b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-09-20 23:47:01,153 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-09-20 23:47:11,068 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-09-20 23:47:13,733 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-09-20 23:47:18,760 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-09-20 23:48:15,314 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
