Console Output
Skipping 175 KB..
Full LogUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-03-09 00:40:30,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:30,724 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:40:31,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-03-09 00:40:31,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-03-09 00:40:32,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-03-09 00:40:32,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:33,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-03-09 00:40:33,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:33,731 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-03-09 00:40:33,732 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:40:33,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-03-09 00:40:33,732 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:40:33,732 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:33,734 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:40:33,736 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:40:33,737 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:40:33,740 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:40:33,743 [ scc.git] DEBUG Already up to date.
2026-03-09 00:40:33,743 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-03-09 00:40:34,104 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-03-09 00:40:34,104 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-03-09 00:40:34,108 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-03-09 00:40:34,372 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-03-09 00:40:34,372 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-03-09 00:40:34,376 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-03-09 00:40:34,628 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-03-09 00:40:34,628 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-03-09 00:40:34,631 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:40:34,631 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:40:34,632 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:34,634 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-03-09 00:40:34,637 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:34,639 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-03-09 00:40:34,646 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:40:34,650 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-03-09 00:40:34,650 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-03-09 00:40:34,650 [ scc.git] DEBUG requirements.txt | 2 +-
2026-03-09 00:40:34,650 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-03-09 00:40:34,650 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-03-09 00:40:34,650 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-03-09 00:40:34,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:40:34,804 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-03-09 00:40:34,807 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:34,809 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-03-09 00:40:34,817 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:40:34,820 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:40:34,820 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:40:35,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:40:35,206 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-03-09 00:40:35,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:35,212 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-03-09 00:40:35,221 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-03-09 00:40:35,221 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-03-09 00:40:35,221 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-09 00:40:35,222 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-09 00:40:35,224 [ scc.git] DEBUG Calling 'git reset --hard 8c874a698509026147d05e0f8f0dba551753bc95'
2026-03-09 00:40:35,228 [ scc.git] DEBUG HEAD is now at 8c874a6 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-03-09 00:40:35,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:40:35,702 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-03-09 00:40:35,705 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-03-09 00:40:35,707 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#83](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-03-09 00:40:35,709 [ scc.config] DEBUG Found github.token
2026-03-09 00:40:35,709 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-03-09 00:40:35,709 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:40:35,747 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:40:35,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:35,749 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:40:35,786 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:40:35,790 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed205190> has no local changes
2026-03-09 00:40:35,790 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:40:35,796 [ scc.git] DEBUG [detached HEAD 6ab491f] merge master -Dorg -Ssuccess-only
2026-03-09 00:40:35,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:40:35,796 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:40:36,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-03-09 00:40:36,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-03-09 00:40:37,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-03-09 00:40:37,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-03-09 00:40:38,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:38,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-03-09 00:40:39,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:39,388 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-03-09 00:40:39,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-03-09 00:40:40,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-03-09 00:40:40,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-03-09 00:40:41,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:41,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-03-09 00:40:42,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:42,320 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-03-09 00:40:42,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-03-09 00:40:43,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-03-09 00:40:43,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-03-09 00:40:44,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:44,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-03-09 00:40:45,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:45,118 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-03-09 00:40:45,118 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:40:45,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-03-09 00:40:45,118 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:40:45,118 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:45,121 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:40:45,123 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:40:45,123 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:40:45,126 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:40:45,132 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-03-09 00:40:45,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-03-09 00:40:45,814 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-03-09 00:40:46,092 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-03-09 00:40:46,092 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-03-09 00:40:46,096 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-03-09 00:40:46,366 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-03-09 00:40:46,366 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-03-09 00:40:46,370 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-03-09 00:40:46,733 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-03-09 00:40:46,733 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-03-09 00:40:46,737 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:40:46,737 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:40:46,737 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:46,739 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-03-09 00:40:46,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:46,745 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-03-09 00:40:46,757 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-03-09 00:40:46,758 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-03-09 00:40:46,758 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-03-09 00:40:46,758 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-03-09 00:40:46,758 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-09 00:40:46,758 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-09 00:40:46,760 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-09 00:40:46,764 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-03-09 00:40:46,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:40:46,914 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-03-09 00:40:46,918 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-09 00:40:46,920 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#83](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-03-09 00:40:46,922 [ scc.config] DEBUG Found github.token
2026-03-09 00:40:46,922 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-03-09 00:40:46,923 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-03-09 00:40:46,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:46,928 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-03-09 00:40:46,941 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-03-09 00:40:46,941 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-03-09 00:40:46,941 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-03-09 00:40:46,941 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-09 00:40:46,942 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-09 00:40:46,944 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-09 00:40:46,949 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-03-09 00:40:47,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:40:47,309 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-03-09 00:40:47,313 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-03-09 00:40:47,316 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#83](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-03-09 00:40:47,318 [ scc.config] DEBUG Found github.token
2026-03-09 00:40:47,318 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-03-09 00:40:47,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-03-09 00:40:47,320 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:47,322 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-03-09 00:40:47,330 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:40:47,333 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-03-09 00:40:47,334 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-03-09 00:40:47,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:40:47,722 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:40:47,761 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:40:47,761 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:40:47,764 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:40:47,802 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:40:47,805 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed1c7950> has no local changes
2026-03-09 00:40:47,805 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:40:47,811 [ scc.git] DEBUG [detached HEAD 05c2ea3] merge master -Dorg -Ssuccess-only
2026-03-09 00:40:47,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:40:47,812 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:40:48,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-03-09 00:40:48,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-03-09 00:40:49,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-03-09 00:40:49,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:50,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:40:50,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-03-09 00:40:51,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:51,411 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:40:51,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-03-09 00:40:51,906 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:40:52,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-03-09 00:40:52,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:53,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:40:53,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-03-09 00:40:54,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:54,377 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-03-09 00:40:54,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-03-09 00:40:54,872 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:40:55,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-03-09 00:40:55,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:40:56,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:40:57,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-03-09 00:40:57,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:40:57,479 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-03-09 00:40:58,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-03-09 00:40:58,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-03-09 00:40:58,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-03-09 00:40:59,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-03-09 00:40:59,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-03-09 00:41:00,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-03-09 00:41:00,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-03-09 00:41:00,862 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:00,863 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-03-09 00:41:00,863 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:00,863 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:00,865 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:00,868 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:00,868 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:00,870 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:00,873 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:00,873 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-03-09 00:41:01,143 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-03-09 00:41:01,143 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-03-09 00:41:01,147 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-03-09 00:41:01,624 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-03-09 00:41:01,624 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-03-09 00:41:01,628 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-03-09 00:41:01,894 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-03-09 00:41:01,894 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-03-09 00:41:01,898 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:01,898 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:01,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:01,901 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-03-09 00:41:01,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:01,905 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-03-09 00:41:01,912 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:01,915 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-03-09 00:41:01,915 [ scc.git] DEBUG package.json | 2 +-
2026-03-09 00:41:01,915 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-03-09 00:41:02,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:02,055 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-03-09 00:41:02,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:02,059 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-03-09 00:41:02,067 [ scc.git] DEBUG Auto-merging package-lock.json
2026-03-09 00:41:02,067 [ scc.git] DEBUG Auto-merging package.json
2026-03-09 00:41:02,068 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:02,071 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-03-09 00:41:02,071 [ scc.git] DEBUG package.json | 2 +-
2026-03-09 00:41:02,071 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-03-09 00:41:02,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:02,473 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-03-09 00:41:02,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:02,478 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-03-09 00:41:02,485 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:02,487 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:02,487 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:02,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:02,903 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:02,941 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:02,941 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:02,943 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:02,980 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:02,984 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed204b90> has no local changes
2026-03-09 00:41:02,984 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:02,990 [ scc.git] DEBUG [detached HEAD fb2a1e4] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:02,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:02,990 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:03,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-03-09 00:41:03,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-03-09 00:41:03,887 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:04,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-03-09 00:41:04,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:05,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:05,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-03-09 00:41:06,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:06,409 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:06,409 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:06,409 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-03-09 00:41:06,409 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:06,409 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:06,411 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:06,414 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:06,414 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:06,416 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:06,419 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:06,419 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-03-09 00:41:06,703 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-03-09 00:41:06,703 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-03-09 00:41:06,707 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:06,707 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:06,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:06,709 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-03-09 00:41:06,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:06,714 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-03-09 00:41:06,720 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:06,723 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:06,723 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:06,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:06,863 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:06,901 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:06,901 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:06,903 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:06,940 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:06,943 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5f3d1d0> has no local changes
2026-03-09 00:41:06,943 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:06,948 [ scc.git] DEBUG [detached HEAD 9dc1842] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:06,949 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:06,949 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:07,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-03-09 00:41:07,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-03-09 00:41:08,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34/comments HTTP/1.1" 200 None
2026-03-09 00:41:08,310 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:08,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-03-09 00:41:09,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:10,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:10,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-03-09 00:41:11,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:11,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-03-09 00:41:12,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-03-09 00:41:12,134 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:12,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-03-09 00:41:12,589 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:12,589 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-03-09 00:41:12,589 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:12,589 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:12,592 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:12,594 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:12,594 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:12,597 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:12,606 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-03-09 00:41:13,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-03-09 00:41:13,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-03-09 00:41:13,935 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-03-09 00:41:14,206 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-03-09 00:41:14,207 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-03-09 00:41:14,210 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:14,210 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:14,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:14,212 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-03-09 00:41:14,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:14,217 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-03-09 00:41:14,223 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-03-09 00:41:14,223 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-03-09 00:41:14,223 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-09 00:41:14,224 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-09 00:41:14,226 [ scc.git] DEBUG Calling 'git reset --hard fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
2026-03-09 00:41:14,229 [ scc.git] DEBUG HEAD is now at fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0
2026-03-09 00:41:14,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:14,377 [ scc.git] DEBUG Calling 'git merge-base fc9ff96901ce7b92e3ba51327ba7ba64fff76959 149bb248277256d589ea0db597c04739e8134301'
2026-03-09 00:41:14,379 [ scc.git] DEBUG Calling 'git diff --name-only bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9..fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
2026-03-09 00:41:14,382 [ scc.git] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#83](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/consoleText) for more details.
Possible conflicts:
- Upstream changes
- .github/workflows/publish_pypi.yml
--conflicts
2026-03-09 00:41:14,384 [ scc.config] DEBUG Found github.token
2026-03-09 00:41:14,384 [ scc.git] DEBUG Not adding comment to issue #34, already --conflicts.
2026-03-09 00:41:14,384 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:14,425 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:14,425 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:14,427 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:14,464 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:14,467 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed1c10d0> has no local changes
2026-03-09 00:41:14,467 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Conflicting PRs (not included):
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:14,473 [ scc.git] DEBUG [detached HEAD 1b17d56] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:14,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:14,473 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:14,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-03-09 00:41:15,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-03-09 00:41:15,371 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:15,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-03-09 00:41:16,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:16,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:17,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-03-09 00:41:17,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:17,810 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:18,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-03-09 00:41:18,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-03-09 00:41:19,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-03-09 00:41:19,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:20,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-03-09 00:41:20,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:20,611 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-03-09 00:41:20,611 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:20,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-03-09 00:41:20,611 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:20,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:20,614 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:20,616 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:20,616 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:20,619 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:20,622 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:20,622 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-03-09 00:41:21,021 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-03-09 00:41:21,021 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-03-09 00:41:21,024 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-03-09 00:41:21,369 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-03-09 00:41:21,369 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-03-09 00:41:21,372 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:21,372 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:21,373 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:21,375 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-03-09 00:41:21,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:21,380 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-03-09 00:41:21,387 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG Auto-merging setup.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-03-09 00:41:21,387 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-09 00:41:21,387 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-09 00:41:21,390 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-03-09 00:41:21,394 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-03-09 00:41:21,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:21,535 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-03-09 00:41:21,537 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-03-09 00:41:21,540 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#83](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
- omero_signup/signup_settings.py
--conflicts
2026-03-09 00:41:21,542 [ scc.config] DEBUG Found github.token
2026-03-09 00:41:21,542 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-03-09 00:41:21,542 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-03-09 00:41:21,544 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:21,547 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-03-09 00:41:21,553 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:21,556 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:21,556 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:21,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:21,959 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:21,998 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:21,998 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:22,000 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:22,036 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:22,040 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed21cb10> has no local changes
2026-03-09 00:41:22,040 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:22,045 [ scc.git] DEBUG [detached HEAD 4ce7cb8] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:22,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:22,045 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:22,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-03-09 00:41:22,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-03-09 00:41:23,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-03-09 00:41:23,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-03-09 00:41:24,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-03-09 00:41:25,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:25,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-03-09 00:41:25,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:25,964 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-03-09 00:41:25,964 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:25,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-03-09 00:41:25,964 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:25,964 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:25,967 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:25,969 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:25,969 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:25,972 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:25,979 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-03-09 00:41:26,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-03-09 00:41:27,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-03-09 00:41:28,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-03-09 00:41:28,085 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-03-09 00:41:28,359 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-03-09 00:41:28,359 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-03-09 00:41:28,362 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:28,362 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:28,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:28,365 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-03-09 00:41:28,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:28,370 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-03-09 00:41:28,378 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-03-09 00:41:28,378 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:28,382 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-03-09 00:41:28,382 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-03-09 00:41:28,382 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-03-09 00:41:28,382 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-03-09 00:41:28,382 [ scc.git] DEBUG ms/test | 2 ++
2026-03-09 00:41:28,382 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-03-09 00:41:28,382 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-03-09 00:41:28,382 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-03-09 00:41:28,383 [ scc.git] DEBUG create mode 100755 ms/test
2026-03-09 00:41:28,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:28,525 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:28,565 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:28,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:28,567 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:28,605 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:28,608 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed22de90> has no local changes
2026-03-09 00:41:28,609 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:28,615 [ scc.git] DEBUG [detached HEAD e052df8] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:28,615 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:28,615 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:29,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-03-09 00:41:29,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-03-09 00:41:29,496 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:30,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-03-09 00:41:30,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:31,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:31,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-03-09 00:41:31,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:31,891 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:31,891 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:31,891 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-03-09 00:41:31,891 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:31,891 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:31,894 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:31,896 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:31,896 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:31,898 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:31,902 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:31,902 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-03-09 00:41:32,185 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-03-09 00:41:32,185 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-03-09 00:41:32,189 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:32,189 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:32,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:32,191 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-03-09 00:41:32,194 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:32,196 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-03-09 00:41:32,203 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:32,206 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:32,206 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:32,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:32,383 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:32,421 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:32,421 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:32,424 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:32,461 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:32,465 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5f1cf10> has no local changes
2026-03-09 00:41:32,465 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:32,471 [ scc.git] DEBUG [detached HEAD 70d58fb] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:32,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:32,471 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:32,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-03-09 00:41:33,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-03-09 00:41:33,419 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:33,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-03-09 00:41:34,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:34,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:35,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-03-09 00:41:36,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:36,067 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:36,067 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:36,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-03-09 00:41:36,067 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:36,067 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:36,070 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:36,072 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:36,072 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:36,074 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:36,082 [ scc.git] DEBUG Updating deab817..160d894
2026-03-09 00:41:36,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-03-09 00:41:36,759 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-03-09 00:41:37,229 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-03-09 00:41:37,229 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-03-09 00:41:37,233 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:37,233 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:37,233 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:37,235 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-03-09 00:41:37,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:37,240 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-03-09 00:41:37,247 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:37,249 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:37,249 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:37,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:37,386 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:37,424 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:37,424 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:37,426 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:37,463 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:37,466 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5f7a950> has no local changes
2026-03-09 00:41:37,466 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:37,472 [ scc.git] DEBUG [detached HEAD 906136d] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:37,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:37,473 [ scc.git] INFO Overriding base-branch from master to main
2026-03-09 00:41:37,473 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:37,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-03-09 00:41:38,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-03-09 00:41:38,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-03-09 00:41:39,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-03-09 00:41:39,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:40,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:40,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-03-09 00:41:41,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:41,310 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-03-09 00:41:41,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-03-09 00:41:42,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-03-09 00:41:42,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-03-09 00:41:43,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-03-09 00:41:43,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:44,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-03-09 00:41:44,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:44,616 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-03-09 00:41:44,616 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:44,616 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-03-09 00:41:44,616 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:44,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:44,619 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-03-09 00:41:44,621 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:44,621 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-03-09 00:41:44,624 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-03-09 00:41:44,630 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-03-09 00:41:45,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-03-09 00:41:46,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-03-09 00:41:46,043 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-03-09 00:41:46,435 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-03-09 00:41:46,436 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-03-09 00:41:46,439 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-03-09 00:41:46,693 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-03-09 00:41:46,693 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-03-09 00:41:46,697 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:46,697 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:46,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:46,699 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-03-09 00:41:46,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:46,705 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-03-09 00:41:46,712 [ scc.git] DEBUG Auto-merging README.rst
2026-03-09 00:41:46,712 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-03-09 00:41:46,712 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-03-09 00:41:46,712 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-03-09 00:41:46,712 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-03-09 00:41:46,712 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-03-09 00:41:46,715 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-03-09 00:41:46,718 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-03-09 00:41:46,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:46,854 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-03-09 00:41:46,857 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-03-09 00:41:46,859 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#83](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-03-09 00:41:46,861 [ scc.config] DEBUG Found github.token
2026-03-09 00:41:46,861 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-03-09 00:41:46,861 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-03-09 00:41:46,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:46,866 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-03-09 00:41:46,874 [ scc.git] DEBUG Auto-merging README.rst
2026-03-09 00:41:46,874 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-03-09 00:41:46,874 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:46,878 [ scc.git] DEBUG README.rst | 3 +
2026-03-09 00:41:46,878 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-03-09 00:41:46,878 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-03-09 00:41:46,878 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-03-09 00:41:46,878 [ scc.git] DEBUG setup.py | 5 +-
2026-03-09 00:41:46,878 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-03-09 00:41:46,878 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-03-09 00:41:47,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:47,263 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:47,304 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:47,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:47,307 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:47,346 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:47,350 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5f8dbd0> has no local changes
2026-03-09 00:41:47,350 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:47,355 [ scc.git] DEBUG [detached HEAD 9c0158f] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:47,356 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:47,356 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:47,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-03-09 00:41:48,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-03-09 00:41:48,255 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:48,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-03-09 00:41:49,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:49,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:50,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-03-09 00:41:50,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:50,827 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:50,827 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:50,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-03-09 00:41:50,827 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:50,827 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:50,830 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:50,832 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:50,832 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:50,835 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:50,838 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:50,838 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-03-09 00:41:51,118 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-03-09 00:41:51,118 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-03-09 00:41:51,122 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:51,122 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:51,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:51,124 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-03-09 00:41:51,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:51,129 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-03-09 00:41:51,135 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:51,138 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:51,138 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:51,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:51,284 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:51,322 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:51,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:51,324 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:51,359 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:51,362 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5f1f550> has no local changes
2026-03-09 00:41:51,362 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:51,368 [ scc.git] DEBUG [detached HEAD 028681d] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:51,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:51,369 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:51,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-03-09 00:41:52,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-03-09 00:41:52,234 [ scc.repo] DEBUG # ... Include label: dependencies
2026-03-09 00:41:52,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-03-09 00:41:53,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-03-09 00:41:53,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-03-09 00:41:54,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-03-09 00:41:54,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-03-09 00:41:54,844 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:41:54,844 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:54,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-03-09 00:41:54,845 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:54,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:54,847 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:54,849 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:54,850 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:54,852 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:54,855 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:54,855 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-03-09 00:41:55,267 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-03-09 00:41:55,267 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-03-09 00:41:55,271 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:55,271 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:55,271 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:55,274 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-03-09 00:41:55,276 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:55,279 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-03-09 00:41:55,285 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-03-09 00:41:55,288 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-03-09 00:41:55,288 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-03-09 00:41:55,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:41:55,435 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:55,473 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:55,473 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:55,475 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:55,513 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:55,517 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5f830d0> has no local changes
2026-03-09 00:41:55,517 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:55,522 [ scc.git] DEBUG [detached HEAD 2c68dee] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:55,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:55,523 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:55,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-03-09 00:41:55,844 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:55,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-03-09 00:41:55,844 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:55,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:55,847 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-03-09 00:41:55,849 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:55,849 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-03-09 00:41:55,851 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-03-09 00:41:55,854 [ scc.git] DEBUG Already up to date.
2026-03-09 00:41:55,854 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:41:55,854 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:55,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:55,856 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:41:55,892 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:55,892 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:55,894 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:41:55,929 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:41:55,932 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5fe19d0> has no local changes
2026-03-09 00:41:55,932 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:41:55,937 [ scc.git] DEBUG [detached HEAD b52d577] merge master -Dorg -Ssuccess-only
2026-03-09 00:41:55,937 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:41:55,937 [ scc.git] INFO Overriding base-branch from master to develop
2026-03-09 00:41:55,937 [ scc.repo] DEBUG ## PRs found:
2026-03-09 00:41:56,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2
2026-03-09 00:41:56,280 [ scc.repo] DEBUG ## Branches found:
2026-03-09 00:41:56,280 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-03-09 00:41:56,280 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:41:56,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:41:56,282 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-03-09 00:41:56,284 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-03-09 00:41:56,285 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-03-09 00:41:56,287 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-03-09 00:41:56,299 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-03-09 00:41:57,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-03-09 00:41:57,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-03-09 00:41:58,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-03-09 00:41:59,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-03-09 00:41:59,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-03-09 00:42:00,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-03-09 00:42:01,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-03-09 00:42:01,006 [ scc.git] DEBUG ## Unique users: []
2026-03-09 00:42:01,006 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:42:01,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:42:01,009 [ scc.git] DEBUG Calling 'git submodule update'
2026-03-09 00:42:01,047 [ scc.git] DEBUG Get sha1 of %s
2026-03-09 00:42:01,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-03-09 00:42:01,050 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:42:01,087 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:42:01,090 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1e5fc6550> has no local changes
2026-03-09 00:42:01,091 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:42:01,097 [ scc.git] DEBUG [detached HEAD 35a4381] merge master -Dorg -Ssuccess-only
2026-03-09 00:42:01,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:01,097 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-03-09 00:42:01,166 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-03-09 00:42:01,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:01,418 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-03-09 00:42:01,420 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-03-09 00:42:01,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:01,808 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-03-09 00:42:01,810 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-03-09 00:42:02,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:02,207 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-03-09 00:42:02,209 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-03-09 00:42:02,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:02,599 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-03-09 00:42:03,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:03,032 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-03-09 00:42:03,033 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-03-09 00:42:03,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:03,432 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-03-09 00:42:03,434 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-03-09 00:42:03,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:03,872 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-03-09 00:42:03,874 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-03-09 00:42:04,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:04,271 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-03-09 00:42:04,273 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-03-09 00:42:04,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:04,665 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-03-09 00:42:04,667 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-03-09 00:42:05,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:05,060 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-03-09 00:42:05,061 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-03-09 00:42:05,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:05,460 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-03-09 00:42:05,462 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-03-09 00:42:05,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:05,846 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-03-09 00:42:05,848 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-03-09 00:42:06,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:06,238 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-03-09 00:42:06,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:06,634 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-03-09 00:42:07,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:07,028 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-03-09 00:42:07,029 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-03-09 00:42:07,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:07,451 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-03-09 00:42:07,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:07,836 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-03-09 00:42:08,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:08,223 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-03-09 00:42:08,225 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-03-09 00:42:08,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:08,621 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-03-09 00:42:08,623 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-03-09 00:42:09,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:09,012 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-03-09 00:42:09,014 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-03-09 00:42:09,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:09,397 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-03-09 00:42:09,399 [ scc.config] DEBUG Found submodule.scripts.url
2026-03-09 00:42:09,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-03-09 00:42:09,785 [ scc.config] DEBUG Found submodule.scripts.branch
2026-03-09 00:42:09,785 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-03-09 00:42:09,863 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1ed2c4850> has local changes
2026-03-09 00:42:09,863 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 669 will-moore 'Standalone python script' (stage: draft)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..c40849ec
Previously merged:
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 662 will-moore 'Export script handles OME-zarr images'
Conflicting PRs (not included):
- PR 663 will-moore 'Zarr'
- PR 666 will-moore 'Standalone app'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Conflicting PRs (not included):
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#83 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/83/)'
2026-03-09 00:42:09,875 [ scc.git] DEBUG [detached HEAD fd73bb3] merge master -Dorg -Ssuccess-only
2026-03-09 00:42:09,875 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-03-09 00:42:09,875 [ scc.merge] INFO Repository: ome/omero-plugins
2026-03-09 00:42:09,875 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,875 [ scc.merge] INFO
2026-03-09 00:42:09,875 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-03-09 00:42:09,875 [ scc.merge] INFO
2026-03-09 00:42:09,875 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-03-09 00:42:09,875 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,875 [ scc.merge] INFO
2026-03-09 00:42:09,875 [ scc.merge] INFO
2026-03-09 00:42:09,875 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-03-09 00:42:09,875 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-03-09 00:42:09,875 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,875 [ scc.merge] INFO
2026-03-09 00:42:09,875 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,875 [ scc.merge] INFO
2026-03-09 00:42:09,875 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-03-09 00:42:09,875 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-03-09 00:42:09,875 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-03-09 00:42:09,875 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-03-09 00:42:09,875 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-03-09 00:42:09,876 [ scc.merge] INFO
2026-03-09 00:42:09,876 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-03-09 00:42:09,876 [ scc.merge] INFO
2026-03-09 00:42:09,876 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-03-09 00:42:09,876 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-03-09 00:42:09,876 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-03-09 00:42:09,876 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:42:09,876 [ scc.merge] INFO
2026-03-09 00:42:09,876 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-03-09 00:42:09,876 [ scc.merge] INFO
2026-03-09 00:42:09,876 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-03-09 00:42:09,876 [ scc.merge] INFO
2026-03-09 00:42:09,876 [ scc.merge] INFO Repository: ome/omero-figure
2026-03-09 00:42:09,876 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' (stage: draft)
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-03-09 00:42:09,876 [ scc.merge] INFO Updating 9cc36cde..c40849ec
2026-03-09 00:42:09,876 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-03-09 00:42:09,876 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:42:09,877 [ scc.merge] INFO
2026-03-09 00:42:09,877 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-03-09 00:42:09,877 [ scc.merge] INFO
2026-03-09 00:42:09,877 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-03-09 00:42:09,877 [ scc.merge] INFO
2026-03-09 00:42:09,877 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-03-09 00:42:09,877 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,877 [ scc.merge] INFO
2026-03-09 00:42:09,877 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-03-09 00:42:09,877 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,877 [ scc.merge] INFO
2026-03-09 00:42:09,877 [ scc.merge] INFO Repository: ome/omero-gallery
2026-03-09 00:42:09,877 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-03-09 00:42:09,878 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-03-09 00:42:09,878 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-03-09 00:42:09,878 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Repository: ome/omero-mapr
2026-03-09 00:42:09,878 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-03-09 00:42:09,878 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,878 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,878 [ scc.merge] INFO
2026-03-09 00:42:09,878 [ scc.merge] INFO Repository: ome/omero-metadata
2026-03-09 00:42:09,878 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-03-09 00:42:09,879 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Repository: ome/omero-parade
2026-03-09 00:42:09,879 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-03-09 00:42:09,879 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-03-09 00:42:09,879 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Repository: ome/omero-rois
2026-03-09 00:42:09,879 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-03-09 00:42:09,879 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-03-09 00:42:09,879 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Repository: ome/omero-signup
2026-03-09 00:42:09,879 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,879 [ scc.merge] INFO
2026-03-09 00:42:09,879 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,879 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-03-09 00:42:09,880 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-03-09 00:42:09,880 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-03-09 00:42:09,880 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Repository: ome/omero-upload
2026-03-09 00:42:09,880 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-03-09 00:42:09,880 [ scc.merge] INFO Updating deab817..160d894
2026-03-09 00:42:09,880 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-03-09 00:42:09,880 [ scc.merge] INFO Excluded PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-03-09 00:42:09,880 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-03-09 00:42:09,880 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Conflicting PRs (not included):
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-03-09 00:42:09,880 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,880 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,880 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,880 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-03-09 00:42:09,881 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,881 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] INFO Merged PRs:
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,881 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-03-09 00:42:09,881 [ scc.merge] INFO Already up to date.
2026-03-09 00:42:09,881 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] INFO Repository: ome/scripts
2026-03-09 00:42:09,881 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-03-09 00:42:09,881 [ scc.merge] INFO Previously merged:
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-03-09 00:42:09,881 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-03-09 00:42:09,881 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] INFO
2026-03-09 00:42:09,881 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-03-09 00:42:09,881 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,883 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-03-09 00:42:09,883 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,885 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,885 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-03-09 00:42:09,885 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,887 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-03-09 00:42:09,888 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-03-09 00:42:09,890 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-03-09 00:42:09,892 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-03-09 00:42:09,894 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-03-09 00:42:09,896 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-03-09 00:42:09,898 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-03-09 00:42:09,900 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,902 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,902 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-03-09 00:42:09,902 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,904 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,904 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-03-09 00:42:09,904 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,906 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,906 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-03-09 00:42:09,906 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-03-09 00:42:09,908 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-03-09 00:42:09,910 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-03-09 00:42:09,912 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-03-09 00:42:09,914 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-03-09 00:42:09,916 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-03-09 00:42:09,918 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-03-09 00:42:09,920 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-03-09 00:42:09,922 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-03-09 00:42:09,925 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-03-09 00:42:09,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-03-09 00:42:09,927 [ scc.git] DEBUG Calling 'git remote'
2026-03-09 00:42:09,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD baf22d8] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD eb1a010] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-03-09 00:42:55,555 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-03-09 00:43:04,787 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-03-09 00:43:07,175 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-03-09 00:43:11,875 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-03-09 00:43:50,433 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
