FailedConsole Output

Started by user devspace
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-plugins-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git ls-remote git://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision df3c083f1a773744de7318992dea71e6509abe77
No credentials specified
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url git://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from git://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git fetch --no-tags --progress git://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision df3c083f1a773744de7318992dea71e6509abe77 (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f df3c083f1a773744de7318992dea71e6509abe77 # timeout=10
Commit message: "Merge pull request #5 from joshmoore/scc-clean-build"
 > git rev-list --no-walk df3c083f1a773744de7318992dea71e6509abe77 # timeout=10
[Pipeline] checkout
No credentials specified
Fetching changes from the remote Git repository
 > git rev-parse --is-inside-work-tree # timeout=10
 > git config remote.origin.url git://github.com/ome/omero-plugins.git # timeout=10
Fetching upstream changes from git://github.com/ome/omero-plugins.git
 > git --version # timeout=10
 > git fetch --tags --progress git://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 08ca33c3211522a9f7e9e6a1a267316b7030eb3b (refs/remotes/origin/master)
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 08ca33c3211522a9f7e9e6a1a267316b7030eb3b # timeout=10
Commit message: "Merge pull request #40 from snoopycrimecop/master_latest_submodules"
Cleaning workspace
 > git rev-list --no-walk 08ca33c3211522a9f7e9e6a1a267316b7030eb3b # timeout=10
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.omero-figure.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10
 > git config --get submodule.minimal-omero-client.url # timeout=10
 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10
 > git config --get submodule.scripts.url # timeout=10
 > git config -f .gitmodules --get submodule.scripts.path # timeout=10
 > git config --get submodule.omero-test-infra.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10
 > git config --get submodule.omero-prometheus-tools.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10
 > git config --get submodule.omero-parade.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10
 > git config --get submodule.omero-mapr.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10
 > git config --get submodule.omero-fpbioimage.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10
 > git config --get submodule.omero-iviewer.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10
 > git config --get submodule.omero-gallery.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10
 > git config --get submodule.rOMERO-gateway.url # timeout=10
 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10
 > git config --get submodule.omero-weberror.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10
 > git config --get submodule.omero-cli-render.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10
 > git config --get submodule.omero-cli-duplicate.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10
 > git config --get submodule.omero-metadata.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10
 > git config --get submodule.omero-webtest.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10
 > git config --get submodule.omero-upload.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10
 > git config --get submodule.omero-virtual-microscope.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10
 > git config --get submodule.omero-rois.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10
 > git config --get submodule.omero-signup.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10
 > git submodule update --init --recursive omero-figure # timeout=10
 > git submodule update --init --recursive minimal-omero-client # timeout=10
 > git submodule update --init --recursive scripts # timeout=10
 > git submodule update --init --recursive omero-test-infra # timeout=10
 > git submodule update --init --recursive omero-prometheus-tools # timeout=10
 > git submodule update --init --recursive omero-parade # timeout=10
 > git submodule update --init --recursive omero-mapr # timeout=10
 > git submodule update --init --recursive omero-fpbioimage # timeout=10
 > git submodule update --init --recursive omero-iviewer # timeout=10
 > git submodule update --init --recursive omero-gallery # timeout=10
 > git submodule update --init --recursive rOMERO-gateway # timeout=10
 > git submodule update --init --recursive omero-weberror # timeout=10
 > git submodule update --init --recursive omero-cli-render # timeout=10
 > git submodule update --init --recursive omero-cli-duplicate # timeout=10
 > git submodule update --init --recursive omero-metadata # timeout=10
 > git submodule update --init --recursive omero-webtest # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 454
[Pipeline] sh
+ pushd build
~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
 > git submodule update --init --recursive omero-upload # timeout=10
 > git submodule update --init --recursive omero-virtual-microscope # timeout=10
 > git submodule update --init --recursive omero-rois # timeout=10
 > git submodule update --init --recursive omero-signup # timeout=10
+ popd
~/workspace/OMERO-plugins-push
+ python -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/py3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/py3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ '[' 'x(venv) ' '!=' x ']'
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python -m pip install scc
Collecting scc
Collecting six (from scc)
  Using cached https://files.pythonhosted.org/packages/ee/ff/48bde5c0f013094d729fe4b0316ba2a24774b3ff1c52d924a8a4cb04078a/six-1.15.0-py2.py3-none-any.whl
Collecting argparse (from scc)
  Using cached https://files.pythonhosted.org/packages/f2/94/3af39d34be01a24a6e65433d19e107099374224905f1e0cc6bbe1fd22a2f/argparse-1.4.0-py2.py3-none-any.whl
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Collecting future (from scc)
Collecting PyYAML>=5.1 (from scc)
  Using cached https://files.pythonhosted.org/packages/64/c2/b80047c7ac2478f9501676c988a5411ed5572f35d1beff9cae07d321512c/PyYAML-5.3.1.tar.gz
Collecting PyGithub (from scc)
  Using cached https://files.pythonhosted.org/packages/e9/47/193780145caa381e9900991c03764506bdd472a64b0a60df1562dd9ac308/PyGithub-1.51-py3-none-any.whl
Collecting requests>=2.14.0 (from PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/1a/70/1935c770cb3be6e3a8b78ced23d7e0f3b187f5cbfab4749523ed65d7c9b1/requests-2.23.0-py2.py3-none-any.whl
Collecting pyjwt (from PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/87/8b/6a9f14b5f781697e51259d81657e6048fd31a113229cf346880bb7545565/PyJWT-1.7.1-py2.py3-none-any.whl
Collecting deprecated (from PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/76/a1/05d7f62f956d77b23a640efc650f80ce24483aa2f85a09c03fb64f49e879/Deprecated-1.2.10-py2.py3-none-any.whl
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 (from requests>=2.14.0->PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/e1/e5/df302e8017440f111c11cc41a6b432838672f5a70aa29227bf58149dc72f/urllib3-1.25.9-py2.py3-none-any.whl
Collecting chardet<4,>=3.0.2 (from requests>=2.14.0->PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/57/2b/26e37a4b034800c960a00c4e1b3d9ca5d7014e983e6e729e33ea2f36426c/certifi-2020.4.5.1-py2.py3-none-any.whl
Collecting idna<3,>=2.5 (from requests>=2.14.0->PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/89/e3/afebe61c546d18fb1709a61bee788254b40e736cff7271c7de5de2dc4128/idna-2.9-py2.py3-none-any.whl
Collecting wrapt<2,>=1.10 (from deprecated->PyGithub->scc)
  Using cached https://files.pythonhosted.org/packages/82/f7/e43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797/wrapt-1.12.1.tar.gz
Installing collected packages: six, argparse, yaclifw, future, PyYAML, urllib3, chardet, certifi, idna, requests, pyjwt, wrapt, deprecated, PyGithub, scc
  Running setup.py install for PyYAML: started
    Running setup.py install for PyYAML: finished with status 'done'
  Running setup.py install for wrapt: started
    Running setup.py install for wrapt: finished with status 'done'
Successfully installed PyGithub-1.51 PyYAML-5.3.1 argparse-1.4.0 certifi-2020.4.5.1 chardet-3.0.4 deprecated-1.2.10 future-0.18.2 idna-2.9 pyjwt-1.7.1 requests-2.23.0 scc-0.12.8 six-1.15.0 urllib3-1.25.9 wrapt-1.12.1 yaclifw-0.2.0
You are using pip version 9.0.3, however version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[Pipeline] sh
+ export BASE_REPO=omero-plugins.git
+ BASE_REPO=omero-plugins.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/py3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/py3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ '[' 'x(venv) ' '!=' x ']'
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2020-06-05 07:19:55,847 [  scc.config] DEBUG Found github.token
2020-06-05 07:19:55,851 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2020-06-05 07:19:56,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2020-06-05 07:19:56,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2020-06-05 07:19:56,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2020-06-05 07:19:56,494 [      scc.gh] DEBUG 4855 remaining from 5000 (Reset at 07:06
2020-06-05 07:19:56,496 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2020-06-05 07:19:56,502 [     scc.git] DEBUG Check current status
2020-06-05 07:19:56,503 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2020-06-05 07:19:56,509 [     scc.git] DEBUG 08ca33c Merge pull request #40 from snoopycrimecop/master_latest_submodules
2020-06-05 07:19:56,510 [     scc.git] DEBUG Calling 'git submodule status'
2020-06-05 07:19:56,628 [     scc.git] DEBUG  b4477b79732dc22205e88091e672397d41949eca minimal-omero-client (remotes/origin/HEAD)
2020-06-05 07:19:56,799 [     scc.git] DEBUG  120836ad1ee9b08fc16db4997bce8ec9ebc0e766 omero-cli-duplicate (v0.3.0-1-g120836a)
2020-06-05 07:19:56,935 [     scc.git] DEBUG  78a35bf5bab8293f4f7cf9dc439b387dc3ba7c99 omero-cli-render (v0.5.0-2-g78a35bf)
2020-06-05 07:19:57,837 [     scc.git] DEBUG  8ec37d4961fa85ba44e03501e6980ad5e4940065 omero-figure (v4.2.0-65-g8ec37d4)
2020-06-05 07:19:58,030 [     scc.git] DEBUG  800c4de6e3ea3a618e61d23891dc07fe499f36aa omero-fpbioimage (v0.4.0-1-g800c4de)
2020-06-05 07:19:58,222 [     scc.git] DEBUG  c467101a8df3b6fe8f12e3f2a7d83189d3d1479e omero-gallery (v3.3.1-1-gc467101)
2020-06-05 07:19:58,577 [     scc.git] DEBUG  a5d93bc7df3bbc9030d896e6ccd533bca327cd58 omero-iviewer (v0.9.1-1-ga5d93bc)
2020-06-05 07:19:58,870 [     scc.git] DEBUG  89f9c87fba77be8f0e9b7a532400a0c6d57902a7 omero-mapr (0.4.0-1-g89f9c87)
2020-06-05 07:19:59,126 [     scc.git] DEBUG  66c1779f7398225ebeec2268f09acc4302f5d7e9 omero-metadata (v0.5.0-1-g66c1779)
2020-06-05 07:19:59,303 [     scc.git] DEBUG  10f3d6907bf32df13532bb18742f58342be38047 omero-parade (v0.2.1-3-g10f3d69)
2020-06-05 07:19:59,378 [     scc.git] DEBUG  bde28f4b1d7bc84613071692647fdb726eb3b1e9 omero-prometheus-tools (0.2.0-1-gbde28f4)
2020-06-05 07:19:59,431 [     scc.git] DEBUG  6f394df4073671cace01211df861121d51def0eb omero-rois (v0.2.0-17-g6f394df)
2020-06-05 07:19:59,521 [     scc.git] DEBUG  6954716f4871b6de6d3035fe521a33cb65a2cb23 omero-signup (v0.2.0-12-g6954716)
2020-06-05 07:19:59,670 [     scc.git] DEBUG  c46381c4e2123b30c9a6e3d2828aeceeeac2bd4c omero-test-infra (v0.6.3)
2020-06-05 07:19:59,754 [     scc.git] DEBUG  18277a7669d37296ecb49f6e8102ec89b99ca0a8 omero-upload (v0.3.0-2-g18277a7)
2020-06-05 07:19:59,815 [     scc.git] DEBUG  88a942ab8e1deceb5eb4bedee56e30d53fb4d142 omero-virtual-microscope (v1.1.0-2-g88a942a)
2020-06-05 07:19:59,913 [     scc.git] DEBUG  68300761317183732664108655e0100b8a9232be omero-weberror (v0.4.0-1-g6830076)
2020-06-05 07:19:59,996 [     scc.git] DEBUG  a03ebb31a766e51f13204615558a6af1bf5e5ec0 omero-webtest (v0.4.0-1-ga03ebb3)
2020-06-05 07:20:00,067 [     scc.git] DEBUG  fd901e22c70d58fdc2556d837cb2d6d3764a20fe rOMERO-gateway (v0.4.9)
2020-06-05 07:20:00,465 [     scc.git] DEBUG  cd74e00a67dbd0cb04d5a999c82d67fdd292d0f5 scripts (v5.6.0-9-gcd74e00)
2020-06-05 07:20:00,472 [  scc.config] DEBUG Found remote.origin.url
2020-06-05 07:20:00,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2020-06-05 07:20:01,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2020-06-05 07:20:01,046 [     scc.git] DEBUG Resetting...
2020-06-05 07:20:01,046 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2020-06-05 07:20:01,056 [     scc.git] DEBUG HEAD is now at 08ca33c Merge pull request #40 from snoopycrimecop/master_latest_submodules
2020-06-05 07:20:01,057 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2020-06-05 07:20:01,947 [     scc.git] DEBUG Check current status
2020-06-05 07:20:01,948 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2020-06-05 07:20:01,952 [     scc.git] DEBUG 08ca33c Merge pull request #40 from snoopycrimecop/master_latest_submodules
2020-06-05 07:20:01,953 [     scc.git] DEBUG Calling 'git submodule status'
2020-06-05 07:20:02,036 [     scc.git] DEBUG  b4477b79732dc22205e88091e672397d41949eca minimal-omero-client (remotes/origin/HEAD)
2020-06-05 07:20:02,063 [     scc.git] DEBUG  120836ad1ee9b08fc16db4997bce8ec9ebc0e766 omero-cli-duplicate (v0.3.0-1-g120836a)
2020-06-05 07:20:02,089 [     scc.git] DEBUG  78a35bf5bab8293f4f7cf9dc439b387dc3ba7c99 omero-cli-render (v0.5.0-2-g78a35bf)
2020-06-05 07:20:02,120 [     scc.git] DEBUG  8ec37d4961fa85ba44e03501e6980ad5e4940065 omero-figure (v4.2.0-65-g8ec37d4)
2020-06-05 07:20:02,144 [     scc.git] DEBUG  800c4de6e3ea3a618e61d23891dc07fe499f36aa omero-fpbioimage (v0.4.0-1-g800c4de)
2020-06-05 07:20:02,168 [     scc.git] DEBUG  c467101a8df3b6fe8f12e3f2a7d83189d3d1479e omero-gallery (v3.3.1-1-gc467101)
2020-06-05 07:20:02,192 [     scc.git] DEBUG  a5d93bc7df3bbc9030d896e6ccd533bca327cd58 omero-iviewer (v0.9.1-1-ga5d93bc)
2020-06-05 07:20:02,216 [     scc.git] DEBUG  89f9c87fba77be8f0e9b7a532400a0c6d57902a7 omero-mapr (0.4.0-1-g89f9c87)
2020-06-05 07:20:02,239 [     scc.git] DEBUG  66c1779f7398225ebeec2268f09acc4302f5d7e9 omero-metadata (v0.5.0-1-g66c1779)
2020-06-05 07:20:02,261 [     scc.git] DEBUG  10f3d6907bf32df13532bb18742f58342be38047 omero-parade (v0.2.1-3-g10f3d69)
2020-06-05 07:20:02,282 [     scc.git] DEBUG  bde28f4b1d7bc84613071692647fdb726eb3b1e9 omero-prometheus-tools (0.2.0-1-gbde28f4)
2020-06-05 07:20:02,302 [     scc.git] DEBUG  6f394df4073671cace01211df861121d51def0eb omero-rois (v0.2.0-17-g6f394df)
2020-06-05 07:20:02,322 [     scc.git] DEBUG  6954716f4871b6de6d3035fe521a33cb65a2cb23 omero-signup (v0.2.0-12-g6954716)
2020-06-05 07:20:02,341 [     scc.git] DEBUG  c46381c4e2123b30c9a6e3d2828aeceeeac2bd4c omero-test-infra (v0.6.3)
2020-06-05 07:20:02,360 [     scc.git] DEBUG  18277a7669d37296ecb49f6e8102ec89b99ca0a8 omero-upload (v0.3.0-2-g18277a7)
2020-06-05 07:20:02,378 [     scc.git] DEBUG  88a942ab8e1deceb5eb4bedee56e30d53fb4d142 omero-virtual-microscope (v1.1.0-2-g88a942a)
2020-06-05 07:20:02,396 [     scc.git] DEBUG  68300761317183732664108655e0100b8a9232be omero-weberror (v0.4.0-1-g6830076)
2020-06-05 07:20:02,416 [     scc.git] DEBUG  a03ebb31a766e51f13204615558a6af1bf5e5ec0 omero-webtest (v0.4.0-1-ga03ebb3)
2020-06-05 07:20:02,434 [     scc.git] DEBUG  fd901e22c70d58fdc2556d837cb2d6d3764a20fe rOMERO-gateway (v0.4.9)
2020-06-05 07:20:02,455 [     scc.git] DEBUG  cd74e00a67dbd0cb04d5a999c82d67fdd292d0f5 scripts (v5.6.0-9-gcd74e00)
2020-06-05 07:20:02,456 [   scc.merge] INFO  Merging Pull Request(s) based on master
2020-06-05 07:20:02,456 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2020-06-05 07:20:02,456 [   scc.merge] INFO  Including Pull Request(s) labelled as include
2020-06-05 07:20:02,456 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2020-06-05 07:20:02,456 [    scc.repo] DEBUG ## PRs found:
2020-06-05 07:20:02,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2020-06-05 07:20:02,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/41 HTTP/1.1" 200 None
2020-06-05 07:20:03,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members/snoopycrimecop HTTP/1.1" 204 0
2020-06-05 07:20:03,144 [    scc.repo] DEBUG   - PR 41 snoopycrimecop 'Update master submodules'
2020-06-05 07:20:03,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/33 HTTP/1.1" 200 None
2020-06-05 07:20:03,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/33/comments HTTP/1.1" 200 None
2020-06-05 07:20:03,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members/sbesson HTTP/1.1" 204 0
2020-06-05 07:20:03,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members/sbesson HTTP/1.1" 204 0
2020-06-05 07:20:04,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members/snoopycrimecop HTTP/1.1" 204 0
2020-06-05 07:20:04,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members/sbesson HTTP/1.1" 204 0
2020-06-05 07:20:04,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members/manics HTTP/1.1" 204 0
2020-06-05 07:20:04,506 [    scc.repo] DEBUG   - PR 33 manics 'Add ome/omero-certificates'
2020-06-05 07:20:04,506 [    scc.repo] DEBUG ## Branches found:
2020-06-05 07:20:04,507 [     scc.git] DEBUG Get sha1 of %s
2020-06-05 07:20:04,507 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2020-06-05 07:20:04,513 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2020-06-05 07:20:04,519 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2020-06-05 07:20:04,520 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2020-06-05 07:20:04,527 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2020-06-05 07:20:04,534 [     scc.git] DEBUG Already up-to-date.

2020-06-05 07:20:04,535 [     scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2020-06-05 07:20:05,296 [     scc.git] DEBUG From git://github.com/ome/omero-plugins
2020-06-05 07:20:05,297 [     scc.git] DEBUG  * branch            refs/pull/33/head -> FETCH_HEAD
2020-06-05 07:20:05,300 [     scc.git] DEBUG Calling 'git fetch origin pull/41/head'
2020-06-05 07:20:06,190 [     scc.git] DEBUG From git://github.com/ome/omero-plugins
2020-06-05 07:20:06,190 [     scc.git] DEBUG  * branch            refs/pull/41/head -> FETCH_HEAD
2020-06-05 07:20:06,193 [     scc.git] DEBUG ## Unique users: []
2020-06-05 07:20:06,193 [     scc.git] DEBUG Get sha1 of %s
2020-06-05 07:20:06,194 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2020-06-05 07:20:06,200 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...53487d3271d68507f3866a4b3b6b17779d82533f'
2020-06-05 07:20:06,208 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2020-06-05 07:20:06,213 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 33 (Add ome/omero-certificates) 53487d3271d68507f3866a4b3b6b17779d82533f'
2020-06-05 07:20:06,230 [     scc.git] DEBUG Merge made by the 'recursive' strategy.
2020-06-05 07:20:06,233 [     scc.git] DEBUG  .gitmodules        |  4 ++++
2020-06-05 07:20:06,233 [     scc.git] DEBUG  .travis.yml        | 11 +++++------
2020-06-05 07:20:06,234 [     scc.git] DEBUG  omero-certificates |  1 +
2020-06-05 07:20:06,237 [     scc.git] DEBUG  omero-test-infra   |  2 +-
2020-06-05 07:20:06,238 [     scc.git] DEBUG  4 files changed, 11 insertions(+), 7 deletions(-)
2020-06-05 07:20:06,239 [     scc.git] DEBUG  create mode 160000 omero-certificates
2020-06-05 07:20:06,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2020-06-05 07:20:06,431 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1738bb2e254ece4716d8fd2921e39750fe537dc7'
2020-06-05 07:20:06,439 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2020-06-05 07:20:06,445 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 41 (Update master submodules) 1738bb2e254ece4716d8fd2921e39750fe537dc7'
2020-06-05 07:20:06,473 [     scc.git] DEBUG Merge made by the 'recursive' strategy.
2020-06-05 07:20:06,477 [     scc.git] DEBUG  omero-figure | 2 +-
2020-06-05 07:20:06,477 [     scc.git] DEBUG  omero-signup | 2 +-
2020-06-05 07:20:06,477 [     scc.git] DEBUG  scripts      | 2 +-
2020-06-05 07:20:06,481 [     scc.git] DEBUG  3 files changed, 3 insertions(+), 3 deletions(-)
2020-06-05 07:20:06,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2020-06-05 07:20:06,667 [     scc.git] DEBUG Calling 'git submodule update'
2020-06-05 07:20:06,998 [     scc.git] DEBUG Submodule path 'omero-figure': checked out 'e6feb04ac430e16fa2674dbaef9f7cf1a3ff73df'
2020-06-05 07:20:08,331 [     scc.git] DEBUG From git://github.com/ome/omero-signup
2020-06-05 07:20:08,331 [     scc.git] DEBUG    c612672..f7ab159  master     -> origin/master
2020-06-05 07:20:08,392 [     scc.git] DEBUG Submodule path 'omero-signup': checked out 'f7ab15963cb5284a255b8574c8675437644fbdf1'
2020-06-05 07:20:09,413 [     scc.git] DEBUG fatal: reference is not a tree: daba5fdd444d8f1248dd41e4e81da3c87f50f5a6
2020-06-05 07:20:09,683 [     scc.git] DEBUG Submodule path 'scripts': checked out '5a2c392d0e4bc5ee451ac18f9866ad68b53ec46d'
2020-06-05 07:20:09,683 [     scc.git] DEBUG Unable to checkout 'daba5fdd444d8f1248dd41e4e81da3c87f50f5a6' in submodule path 'omero-test-infra'
2020-06-05 07:20:09,685 [   scc.merge] DEBUG Cleaning remote branches created for merging
2020-06-05 07:20:09,685 [     scc.git] DEBUG Calling 'git remote'
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/main.py", line 84, in entry_point
    (UpdateSubmodules.NAME, UpdateSubmodules),
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/yaclifw/framework.py", line 188, in main
    ns.func(ns)
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/git.py", line 3241, in __call__
    self.merge(args, self.main_repo)
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/git.py", line 3271, in merge
    set_commit_status=args.set_commit_status)
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/git.py", line 1801, in rmerge
    set_commit_status=set_commit_status)
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/git.py", line 1573, in merge
    self.call("git", "submodule", "update")
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/git.py", line 1123, in call
    return self.wrap_call(self.debugWrap, *command, **kwargs)
  File "/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.6/site-packages/scc/git.py", line 1148, in wrap_call
    raise Exception("rc=%s" % rc)
Exception: rc=1
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE