Console Output
Skipping 180 KB..
Full Logc working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:41:33,089 [ scc.git] DEBUG [detached HEAD 171687b] merge master -Dorg -Ssuccess-only
2025-12-18 00:41:33,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:41:33,089 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:41:33,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-12-18 00:41:34,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2025-12-18 00:41:34,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2025-12-18 00:41:34,507 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:41:35,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-18 00:41:35,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:35,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:41:36,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2025-12-18 00:41:37,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:37,106 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:41:37,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-12-18 00:41:38,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-18 00:41:38,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:38,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-12-18 00:41:39,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:39,454 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:41:39,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-12-18 00:41:40,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-12-18 00:41:40,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-18 00:41:41,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:41,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-12-18 00:41:42,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:42,326 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-12-18 00:41:42,326 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:41:42,326 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-18 00:41:42,326 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:41:42,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:42,329 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:41:42,331 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:41:42,331 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:41:42,334 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:41:42,337 [ scc.git] DEBUG Already up to date.
2025-12-18 00:41:42,337 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-12-18 00:41:42,622 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-18 00:41:42,622 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-12-18 00:41:42,626 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-12-18 00:41:42,883 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-18 00:41:42,883 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-12-18 00:41:42,886 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2025-12-18 00:41:43,208 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-12-18 00:41:43,208 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2025-12-18 00:41:43,212 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:41:43,212 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:41:43,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:43,214 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-18 00:41:43,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:43,219 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-12-18 00:41:43,227 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:41:43,231 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-12-18 00:41:43,231 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-12-18 00:41:43,231 [ scc.git] DEBUG requirements.txt | 2 +-
2025-12-18 00:41:43,231 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-12-18 00:41:43,231 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-12-18 00:41:43,231 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-12-18 00:41:43,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:41:43,373 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-18 00:41:43,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:43,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-18 00:41:43,386 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:41:43,389 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:41:43,389 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:41:43,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:41:43,766 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-18 00:41:43,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:43,771 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-18 00:41:43,778 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2025-12-18 00:41:43,778 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2025-12-18 00:41:43,778 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-18 00:41:43,779 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-18 00:41:43,781 [ scc.git] DEBUG Calling 'git reset --hard 6971a95f2207a7feed70a927465fb179f367a707'
2025-12-18 00:41:43,785 [ scc.git] DEBUG HEAD is now at 6971a95 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2025-12-18 00:41:44,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:41:44,168 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-18 00:41:44,171 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2025-12-18 00:41:44,173 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#2](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2025-12-18 00:41:44,176 [ scc.config] DEBUG Found github.token
2025-12-18 00:41:44,176 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2025-12-18 00:41:44,176 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:41:44,211 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:41:44,211 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:44,213 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:41:44,247 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:41:44,251 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e426690> has no local changes
2025-12-18 00:41:44,251 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:41:44,257 [ scc.git] DEBUG [detached HEAD e957663] merge master -Dorg -Ssuccess-only
2025-12-18 00:41:44,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:41:44,257 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:41:44,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-12-18 00:41:45,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-12-18 00:41:45,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-12-18 00:41:46,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-18 00:41:46,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:47,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-18 00:41:47,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:47,882 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-18 00:41:48,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-12-18 00:41:48,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-12-18 00:41:49,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-18 00:41:49,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:50,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-18 00:41:50,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:50,886 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-18 00:41:50,886 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:41:50,886 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-18 00:41:50,887 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:41:50,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:50,889 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:41:50,892 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:41:50,892 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:41:50,894 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:41:50,900 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-12-18 00:41:51,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-12-18 00:41:51,513 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-12-18 00:41:51,946 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-18 00:41:51,946 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-12-18 00:41:51,950 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-12-18 00:41:52,270 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-18 00:41:52,270 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-12-18 00:41:52,275 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:41:52,275 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:41:52,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:52,277 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-18 00:41:52,281 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:52,283 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-18 00:41:52,295 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-12-18 00:41:52,295 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-12-18 00:41:52,295 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-18 00:41:52,295 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-18 00:41:52,295 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-18 00:41:52,296 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-18 00:41:52,298 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-18 00:41:52,302 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-18 00:41:52,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:41:52,476 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-18 00:41:52,480 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-18 00:41:52,483 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#2](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-12-18 00:41:52,485 [ scc.config] DEBUG Found github.token
2025-12-18 00:41:52,485 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-12-18 00:41:52,485 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-18 00:41:52,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:52,491 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-18 00:41:52,504 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-18 00:41:52,504 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-18 00:41:52,504 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-12-18 00:41:52,504 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-18 00:41:52,505 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-18 00:41:52,507 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-18 00:41:52,512 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-18 00:41:52,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:41:52,891 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-18 00:41:52,895 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-18 00:41:52,898 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#2](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-12-18 00:41:52,900 [ scc.config] DEBUG Found github.token
2025-12-18 00:41:52,900 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-12-18 00:41:52,900 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:41:52,937 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:41:52,937 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:41:52,939 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:41:52,974 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:41:52,977 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f42405ee010> has no local changes
2025-12-18 00:41:52,978 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:41:52,984 [ scc.git] DEBUG [detached HEAD 405c4d5] merge master -Dorg -Ssuccess-only
2025-12-18 00:41:52,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:41:52,984 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:41:53,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-12-18 00:41:53,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-12-18 00:41:54,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-18 00:41:54,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:55,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:41:56,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-18 00:41:56,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:56,508 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:41:56,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-12-18 00:41:56,995 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:41:57,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-18 00:41:58,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:41:58,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:41:59,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-18 00:41:59,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:41:59,725 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-18 00:42:00,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-12-18 00:42:00,213 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:00,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-18 00:42:01,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:01,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:02,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-18 00:42:02,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:02,725 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-18 00:42:03,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-12-18 00:42:03,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-12-18 00:42:04,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-12-18 00:42:04,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-12-18 00:42:05,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-12-18 00:42:05,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-12-18 00:42:06,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-12-18 00:42:06,100 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:06,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-18 00:42:06,100 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:06,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:06,103 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:06,105 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:06,105 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:06,108 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:06,110 [ scc.git] DEBUG Already up to date.
2025-12-18 00:42:06,111 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-12-18 00:42:06,382 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-18 00:42:06,382 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-12-18 00:42:06,386 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-12-18 00:42:06,646 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-18 00:42:06,646 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-12-18 00:42:06,650 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-12-18 00:42:06,908 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-18 00:42:06,908 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-12-18 00:42:06,912 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:06,912 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:06,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:06,915 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-18 00:42:06,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:06,919 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-18 00:42:06,926 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:06,930 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-12-18 00:42:06,930 [ scc.git] DEBUG package.json | 2 +-
2025-12-18 00:42:06,930 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-12-18 00:42:07,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:07,087 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-12-18 00:42:07,089 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:07,092 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-12-18 00:42:07,100 [ scc.git] DEBUG Auto-merging package-lock.json
2025-12-18 00:42:07,101 [ scc.git] DEBUG Auto-merging package.json
2025-12-18 00:42:07,101 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:07,104 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-12-18 00:42:07,104 [ scc.git] DEBUG package.json | 2 +-
2025-12-18 00:42:07,104 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-12-18 00:42:07,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:07,480 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-18 00:42:07,483 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:07,485 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-18 00:42:07,493 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:07,496 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:07,496 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:07,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:07,877 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:07,912 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:07,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:07,914 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:07,949 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:07,953 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e458310> has no local changes
2025-12-18 00:42:07,953 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:07,959 [ scc.git] DEBUG [detached HEAD d153e41] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:07,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:07,959 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:08,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-12-18 00:42:08,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-12-18 00:42:08,873 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:09,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-18 00:42:09,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:10,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:10,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-18 00:42:11,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:11,337 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:42:11,337 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:11,337 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-18 00:42:11,337 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:11,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:11,340 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:11,342 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:11,342 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:11,345 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:11,348 [ scc.git] DEBUG Already up to date.
2025-12-18 00:42:11,348 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-12-18 00:42:11,617 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-12-18 00:42:11,617 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-12-18 00:42:11,620 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:11,620 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:11,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:11,623 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-18 00:42:11,625 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:11,627 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-18 00:42:11,633 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:11,636 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:11,636 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:11,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:11,783 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:11,821 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:11,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:11,823 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:11,858 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:11,860 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e400990> has no local changes
2025-12-18 00:42:11,860 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:11,866 [ scc.git] DEBUG [detached HEAD feafea0] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:11,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:11,866 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:12,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-12-18 00:42:12,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-12-18 00:42:12,806 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:13,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-18 00:42:13,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:14,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:14,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-18 00:42:15,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:15,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-18 00:42:16,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-12-18 00:42:16,303 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:42:16,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-12-18 00:42:17,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-12-18 00:42:17,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-18 00:42:18,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:18,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:19,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-18 00:42:19,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:20,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-18 00:42:20,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-12-18 00:42:20,807 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-12-18 00:42:21,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-12-18 00:42:21,309 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:21,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-18 00:42:21,309 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:21,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:21,312 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:21,314 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:21,314 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:21,317 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:21,319 [ scc.git] DEBUG Already up to date.
2025-12-18 00:42:21,319 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-12-18 00:42:21,597 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-18 00:42:21,597 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-12-18 00:42:21,602 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-12-18 00:42:21,863 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-18 00:42:21,863 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-12-18 00:42:21,867 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:21,867 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:21,867 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:21,870 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-18 00:42:21,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:21,875 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-18 00:42:21,881 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:21,884 [ scc.git] DEBUG setup.py | 4 +-
2025-12-18 00:42:21,884 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-12-18 00:42:21,884 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-12-18 00:42:21,884 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-12-18 00:42:22,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:22,030 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-12-18 00:42:22,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:22,035 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-12-18 00:42:22,042 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:22,045 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:22,045 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:22,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:22,423 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:22,459 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:22,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:22,461 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:22,496 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:22,499 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e4743d0> has no local changes
2025-12-18 00:42:22,499 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:22,504 [ scc.git] DEBUG [detached HEAD 764f8eb] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:22,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:22,505 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:22,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-12-18 00:42:23,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-12-18 00:42:23,471 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:23,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-18 00:42:24,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:25,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:25,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-18 00:42:25,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:25,967 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:42:26,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-12-18 00:42:26,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-12-18 00:42:27,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-18 00:42:27,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:28,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-18 00:42:28,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:28,798 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-18 00:42:28,798 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:28,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-18 00:42:28,798 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:28,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:28,801 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:28,803 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:28,803 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:28,806 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:28,809 [ scc.git] DEBUG Already up to date.
2025-12-18 00:42:28,809 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-18 00:42:29,089 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-18 00:42:29,089 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-18 00:42:29,093 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-18 00:42:29,343 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-18 00:42:29,343 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-18 00:42:29,347 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:29,348 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:29,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:29,350 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-18 00:42:29,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:29,354 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-18 00:42:29,362 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG Auto-merging setup.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-12-18 00:42:29,362 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-18 00:42:29,362 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-18 00:42:29,365 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-18 00:42:29,368 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-12-18 00:42:29,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:29,545 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-18 00:42:29,548 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-18 00:42:29,550 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#2](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
--conflicts
2025-12-18 00:42:29,552 [ scc.config] DEBUG Found github.token
2025-12-18 00:42:29,552 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-12-18 00:42:29,552 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-18 00:42:29,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:29,557 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-18 00:42:29,563 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:29,565 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:29,566 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:29,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:29,944 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:29,980 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:29,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:29,982 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:30,016 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:30,019 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e453f50> has no local changes
2025-12-18 00:42:30,019 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:30,024 [ scc.git] DEBUG [detached HEAD 0010711] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:30,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:30,025 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:30,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-12-18 00:42:31,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-12-18 00:42:31,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-12-18 00:42:31,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2025-12-18 00:42:32,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-12-18 00:42:32,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:33,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:33,433 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:33,433 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-18 00:42:33,433 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:33,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:33,436 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:33,438 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:33,438 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:33,441 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:33,447 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2025-12-18 00:42:34,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2025-12-18 00:42:34,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2025-12-18 00:42:35,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2025-12-18 00:42:35,341 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:35,342 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:35,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:35,344 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:35,380 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:35,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:35,382 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:35,417 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:35,420 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4240626e90> has no local changes
2025-12-18 00:42:35,420 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:35,426 [ scc.git] DEBUG [detached HEAD dd56e51] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:35,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:35,426 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:35,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-12-18 00:42:36,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-12-18 00:42:36,309 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:36,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-18 00:42:37,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:37,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:38,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-18 00:42:38,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:38,725 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:42:38,725 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:38,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-18 00:42:38,725 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:38,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:38,728 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:38,730 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:38,730 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:38,733 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:38,736 [ scc.git] DEBUG Already up to date.
2025-12-18 00:42:38,736 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-18 00:42:38,997 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-12-18 00:42:38,997 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-18 00:42:39,001 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:39,001 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:39,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:39,003 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-18 00:42:39,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:39,008 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-18 00:42:39,014 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:39,017 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:39,017 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:39,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:39,165 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:39,202 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:39,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:39,204 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:39,240 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:39,243 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f424061a490> has no local changes
2025-12-18 00:42:39,243 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:39,248 [ scc.git] DEBUG [detached HEAD 261f0f1] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:39,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:39,249 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:39,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-12-18 00:42:40,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-12-18 00:42:40,206 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:40,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-18 00:42:41,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:41,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:42,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-18 00:42:42,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:42,739 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:42:42,739 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:42,739 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-18 00:42:42,739 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:42,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:42,742 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:42,744 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:42,744 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:42,746 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:42,754 [ scc.git] DEBUG Updating deab817..160d894
2025-12-18 00:42:43,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-12-18 00:42:43,414 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-18 00:42:43,703 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-12-18 00:42:43,703 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-18 00:42:43,706 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:43,706 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:43,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:43,709 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-18 00:42:43,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:43,713 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-18 00:42:43,720 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:43,723 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:43,723 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:43,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:43,880 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:43,917 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:43,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:43,919 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:43,954 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:43,957 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4240627010> has no local changes
2025-12-18 00:42:43,957 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:43,963 [ scc.git] DEBUG [detached HEAD a7d2bf6] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:43,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:43,963 [ scc.git] INFO Overriding base-branch from master to main
2025-12-18 00:42:43,963 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:44,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-12-18 00:42:44,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-12-18 00:42:45,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-12-18 00:42:45,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-18 00:42:46,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:46,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:47,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-18 00:42:47,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:47,742 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-12-18 00:42:48,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-12-18 00:42:48,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-12-18 00:42:49,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-12-18 00:42:49,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-18 00:42:50,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:50,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-18 00:42:51,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:51,112 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-18 00:42:51,112 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:51,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-18 00:42:51,112 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:51,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:51,115 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-12-18 00:42:51,117 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:51,117 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-12-18 00:42:51,120 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-12-18 00:42:51,126 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2025-12-18 00:42:51,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2025-12-18 00:42:52,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-12-18 00:42:52,434 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-12-18 00:42:52,718 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-18 00:42:52,718 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-12-18 00:42:52,722 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-12-18 00:42:52,973 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-18 00:42:52,973 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-12-18 00:42:52,977 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:52,977 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:52,977 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:52,979 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-18 00:42:52,981 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:52,983 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-18 00:42:52,991 [ scc.git] DEBUG Auto-merging README.rst
2025-12-18 00:42:52,991 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-12-18 00:42:52,991 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-12-18 00:42:52,991 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-18 00:42:52,991 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-18 00:42:52,991 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-18 00:42:52,994 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-18 00:42:52,997 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2025-12-18 00:42:53,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:53,150 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-18 00:42:53,152 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-18 00:42:53,155 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#2](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-12-18 00:42:53,157 [ scc.config] DEBUG Found github.token
2025-12-18 00:42:53,157 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-12-18 00:42:53,157 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-18 00:42:53,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:53,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-18 00:42:53,169 [ scc.git] DEBUG Auto-merging README.rst
2025-12-18 00:42:53,169 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-18 00:42:53,170 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:53,173 [ scc.git] DEBUG README.rst | 3 +
2025-12-18 00:42:53,173 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-12-18 00:42:53,173 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-12-18 00:42:53,173 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-12-18 00:42:53,173 [ scc.git] DEBUG setup.py | 5 +-
2025-12-18 00:42:53,173 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-12-18 00:42:53,173 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-12-18 00:42:53,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:53,552 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:53,587 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:53,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:53,589 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:53,623 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:53,626 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e407ed0> has no local changes
2025-12-18 00:42:53,626 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:53,632 [ scc.git] DEBUG [detached HEAD 9b48fae] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:53,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:53,633 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:54,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-12-18 00:42:54,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-12-18 00:42:54,589 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:55,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-18 00:42:55,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:42:56,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:42:56,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-18 00:42:57,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:42:57,052 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:42:57,052 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:42:57,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-18 00:42:57,052 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:57,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:57,055 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:42:57,057 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:42:57,057 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:42:57,060 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:42:57,062 [ scc.git] DEBUG Already up to date.
2025-12-18 00:42:57,062 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-12-18 00:42:57,339 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-12-18 00:42:57,339 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-12-18 00:42:57,343 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:42:57,343 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:57,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:57,346 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-18 00:42:57,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:57,351 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-18 00:42:57,358 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:42:57,361 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:42:57,361 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:42:57,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:42:57,502 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:42:57,539 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:42:57,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:42:57,541 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:42:57,576 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:42:57,579 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f424051e150> has no local changes
2025-12-18 00:42:57,579 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:42:57,585 [ scc.git] DEBUG [detached HEAD 34fb290] merge master -Dorg -Ssuccess-only
2025-12-18 00:42:57,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:42:57,586 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:42:57,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-12-18 00:42:58,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-12-18 00:42:58,482 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-18 00:42:59,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-18 00:42:59,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:43:00,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:43:00,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-18 00:43:00,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:43:00,938 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:00,939 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:43:00,939 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-18 00:43:00,939 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:00,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:00,942 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:43:00,944 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:43:00,944 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:43:00,947 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:43:00,950 [ scc.git] DEBUG Already up to date.
2025-12-18 00:43:00,950 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-12-18 00:43:01,234 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-12-18 00:43:01,234 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-12-18 00:43:01,238 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:43:01,238 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:01,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:01,240 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-18 00:43:01,243 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:01,245 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-18 00:43:01,251 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:43:01,253 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-18 00:43:01,253 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-18 00:43:01,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:01,415 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:43:01,450 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:01,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:01,452 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:43:01,486 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:43:01,490 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e45f150> has no local changes
2025-12-18 00:43:01,490 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:43:01,496 [ scc.git] DEBUG [detached HEAD be6ddba] merge master -Dorg -Ssuccess-only
2025-12-18 00:43:01,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:01,496 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:43:01,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2025-12-18 00:43:01,857 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:43:01,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-18 00:43:01,857 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:01,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:01,859 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-18 00:43:01,861 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:43:01,861 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-18 00:43:01,863 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-18 00:43:01,866 [ scc.git] DEBUG Already up to date.
2025-12-18 00:43:01,866 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:43:01,866 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:01,866 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:01,868 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:43:01,903 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:01,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:01,905 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:43:01,939 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:43:01,942 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4240626fd0> has no local changes
2025-12-18 00:43:01,942 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:43:01,948 [ scc.git] DEBUG [detached HEAD 7c412ad] merge master -Dorg -Ssuccess-only
2025-12-18 00:43:01,948 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:01,949 [ scc.git] INFO Overriding base-branch from master to develop
2025-12-18 00:43:01,949 [ scc.repo] DEBUG ## PRs found:
2025-12-18 00:43:02,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-12-18 00:43:02,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None
2025-12-18 00:43:03,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-18 00:43:03,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-18 00:43:04,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-18 00:43:04,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-18 00:43:05,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2
2025-12-18 00:43:05,095 [ scc.repo] DEBUG - PR 231 jburel 'Create Release '
2025-12-18 00:43:05,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-12-18 00:43:06,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-12-18 00:43:06,097 [ scc.repo] DEBUG ## Branches found:
2025-12-18 00:43:06,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-18 00:43:06,097 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:06,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:06,099 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-12-18 00:43:06,102 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-18 00:43:06,102 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-12-18 00:43:06,104 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-12-18 00:43:06,116 [ scc.git] DEBUG Updating 4b4c755..18a9a75
2025-12-18 00:43:06,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2025-12-18 00:43:07,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2025-12-18 00:43:08,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2025-12-18 00:43:08,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-12-18 00:43:09,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-12-18 00:43:10,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-12-18 00:43:10,193 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head'
2025-12-18 00:43:10,457 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-12-18 00:43:10,458 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD
2025-12-18 00:43:10,461 [ scc.git] DEBUG ## Unique users: []
2025-12-18 00:43:10,461 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:10,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:10,463 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-18 00:43:10,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:10,468 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-18 00:43:10,475 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-18 00:43:10,478 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++----
2025-12-18 00:43:10,478 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-)
2025-12-18 00:43:10,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:10,626 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-18 00:43:10,661 [ scc.git] DEBUG Get sha1 of %s
2025-12-18 00:43:10,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-18 00:43:10,663 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:43:10,697 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:43:10,701 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f423e415890> has no local changes
2025-12-18 00:43:10,701 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:43:10,707 [ scc.git] DEBUG [detached HEAD 6bd6957] merge master -Dorg -Ssuccess-only
2025-12-18 00:43:10,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:10,708 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-18 00:43:10,776 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-12-18 00:43:11,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:11,029 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-12-18 00:43:11,030 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-12-18 00:43:11,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:11,538 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-12-18 00:43:11,540 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-12-18 00:43:11,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:11,937 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-12-18 00:43:11,939 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-12-18 00:43:12,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:12,334 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-12-18 00:43:12,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:12,730 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-12-18 00:43:12,732 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-12-18 00:43:13,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:13,129 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-12-18 00:43:13,131 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-12-18 00:43:13,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:13,527 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-12-18 00:43:13,529 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-12-18 00:43:13,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:13,934 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-12-18 00:43:13,936 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-12-18 00:43:14,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:14,325 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-12-18 00:43:14,327 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-12-18 00:43:14,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:14,731 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-12-18 00:43:14,733 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-12-18 00:43:15,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:15,123 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-12-18 00:43:15,125 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-12-18 00:43:15,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:15,513 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-12-18 00:43:15,515 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-12-18 00:43:15,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:15,906 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-12-18 00:43:16,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:16,300 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-12-18 00:43:16,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:16,705 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-12-18 00:43:16,707 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-12-18 00:43:17,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:17,117 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-12-18 00:43:17,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:17,509 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-12-18 00:43:17,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:17,937 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-12-18 00:43:17,939 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-12-18 00:43:18,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:18,335 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-12-18 00:43:18,337 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-12-18 00:43:18,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:18,726 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-12-18 00:43:18,728 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-12-18 00:43:19,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:19,134 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-12-18 00:43:19,136 [ scc.config] DEBUG Found submodule.scripts.url
2025-12-18 00:43:19,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-18 00:43:19,526 [ scc.config] DEBUG Found submodule.scripts.branch
2025-12-18 00:43:19,526 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-18 00:43:19,601 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f424221bad0> has local changes
2025-12-18 00:43:19,601 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..218f91f8
Previously merged:
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
Conflicting PRs (not included):
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..18a9a75
Previously merged:
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/2/)'
2025-12-18 00:43:19,612 [ scc.git] DEBUG [detached HEAD f2eb982] merge master -Dorg -Ssuccess-only
2025-12-18 00:43:19,612 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-12-18 00:43:19,612 [ scc.merge] INFO Repository: ome/omero-plugins
2025-12-18 00:43:19,612 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,612 [ scc.merge] INFO
2025-12-18 00:43:19,612 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,612 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-12-18 00:43:19,612 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-12-18 00:43:19,612 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-12-18 00:43:19,612 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-12-18 00:43:19,613 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-12-18 00:43:19,613 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-12-18 00:43:19,613 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-12-18 00:43:19,613 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-12-18 00:43:19,613 [ scc.merge] INFO Updating ce6e13c..68b7303
2025-12-18 00:43:19,613 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-12-18 00:43:19,613 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-12-18 00:43:19,613 [ scc.merge] INFO Updating 11d3587..37ea700
2025-12-18 00:43:19,613 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:43:19,613 [ scc.merge] INFO
2025-12-18 00:43:19,613 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2025-12-18 00:43:19,613 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Repository: ome/omero-figure
2025-12-18 00:43:19,614 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-12-18 00:43:19,614 [ scc.merge] INFO Updating 9cc36cde..218f91f8
2025-12-18 00:43:19,614 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-12-18 00:43:19,614 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-12-18 00:43:19,614 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Repository: ome/omero-gallery
2025-12-18 00:43:19,614 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,614 [ scc.merge] INFO
2025-12-18 00:43:19,614 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-12-18 00:43:19,615 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-12-18 00:43:19,615 [ scc.merge] INFO Updating 7a798ce..5e2de43
2025-12-18 00:43:19,615 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Repository: ome/omero-mapr
2025-12-18 00:43:19,615 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-12-18 00:43:19,615 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,615 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,615 [ scc.merge] INFO
2025-12-18 00:43:19,615 [ scc.merge] INFO Repository: ome/omero-metadata
2025-12-18 00:43:19,615 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-12-18 00:43:19,616 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Repository: ome/omero-parade
2025-12-18 00:43:19,616 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-12-18 00:43:19,616 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-12-18 00:43:19,616 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Repository: ome/omero-rois
2025-12-18 00:43:19,616 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-18 00:43:19,616 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Repository: ome/omero-signup
2025-12-18 00:43:19,616 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-18 00:43:19,616 [ scc.merge] INFO
2025-12-18 00:43:19,616 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-12-18 00:43:19,616 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-12-18 00:43:19,616 [ scc.merge] INFO Updating cda3ec6..c8a0015
2025-12-18 00:43:19,616 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,616 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: ome/omero-upload
2025-12-18 00:43:19,617 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-12-18 00:43:19,617 [ scc.merge] INFO Updating deab817..160d894
2025-12-18 00:43:19,617 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-12-18 00:43:19,617 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-12-18 00:43:19,617 [ scc.merge] INFO Updating 8f3c313..4e1e685
2025-12-18 00:43:19,617 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-12-18 00:43:19,617 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-12-18 00:43:19,617 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-12-18 00:43:19,617 [ scc.merge] INFO Already up to date.
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO
2025-12-18 00:43:19,617 [ scc.merge] INFO Repository: ome/scripts
2025-12-18 00:43:19,617 [ scc.merge] INFO Excluded PRs:
2025-12-18 00:43:19,617 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-12-18 00:43:19,618 [ scc.merge] INFO Updating 4b4c755..18a9a75
2025-12-18 00:43:19,618 [ scc.merge] INFO Previously merged:
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-12-18 00:43:19,618 [ scc.merge] INFO
2025-12-18 00:43:19,618 [ scc.merge] INFO Merged PRs:
2025-12-18 00:43:19,618 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2025-12-18 00:43:19,618 [ scc.merge] INFO
2025-12-18 00:43:19,618 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-18 00:43:19,618 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-12-18 00:43:19,620 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-12-18 00:43:19,622 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-12-18 00:43:19,624 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-12-18 00:43:19,626 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-12-18 00:43:19,628 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-12-18 00:43:19,630 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-12-18 00:43:19,632 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-12-18 00:43:19,634 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-18 00:43:19,637 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-18 00:43:19,639 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-18 00:43:19,641 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-18 00:43:19,643 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-18 00:43:19,645 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-18 00:43:19,647 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,649 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-18 00:43:19,649 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-18 00:43:19,651 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,652 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-18 00:43:19,653 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-18 00:43:19,655 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,657 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-18 00:43:19,657 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-18 00:43:19,659 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-18 00:43:19,661 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-18 00:43:19,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-18 00:43:19,662 [ scc.git] DEBUG Calling 'git remote'
2025-12-18 00:43:19,664 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 9bb1d91] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD b602846] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-12-18 00:44:05,681 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-12-18 00:44:14,827 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-12-18 00:44:17,285 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-18 00:44:22,045 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-18 00:45:00,707 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
