Console Output
Skipping 193 KB..
Full Logrepos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-02-14 00:41:10,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:11,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:11,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-02-14 00:41:12,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:12,208 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:41:12,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-02-14 00:41:13,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-02-14 00:41:13,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:14,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-02-14 00:41:14,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:14,577 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:41:15,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-02-14 00:41:15,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-02-14 00:41:16,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-14 00:41:16,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:17,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-14 00:41:17,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:17,456 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-02-14 00:41:17,456 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:41:17,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-14 00:41:17,456 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:17,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:17,459 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:41:17,461 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:41:17,461 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:41:17,464 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:41:17,467 [ scc.git] DEBUG Already up to date.
2026-02-14 00:41:17,467 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-02-14 00:41:17,732 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-14 00:41:17,732 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-02-14 00:41:17,736 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-02-14 00:41:17,989 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-14 00:41:17,989 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-02-14 00:41:17,993 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-02-14 00:41:18,245 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-14 00:41:18,245 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-02-14 00:41:18,248 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:41:18,248 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:18,248 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:18,250 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-14 00:41:18,254 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:18,256 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-14 00:41:18,263 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:18,266 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-02-14 00:41:18,266 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-02-14 00:41:18,266 [ scc.git] DEBUG requirements.txt | 2 +-
2026-02-14 00:41:18,266 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-02-14 00:41:18,266 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-02-14 00:41:18,266 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-02-14 00:41:18,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:18,411 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-14 00:41:18,414 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:18,416 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-14 00:41:18,423 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:18,426 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:41:18,426 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:41:18,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:18,808 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-14 00:41:18,811 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:18,813 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-14 00:41:18,820 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-02-14 00:41:18,820 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-02-14 00:41:18,821 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-14 00:41:18,821 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-14 00:41:18,823 [ scc.git] DEBUG Calling 'git reset --hard cc2c16ab1f6f1247c0dda269d1955ed7f32b4b4e'
2026-02-14 00:41:18,827 [ scc.git] DEBUG HEAD is now at cc2c16a merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-02-14 00:41:19,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:19,199 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-14 00:41:19,202 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-02-14 00:41:19,204 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#57](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-02-14 00:41:19,206 [ scc.config] DEBUG Found github.token
2026-02-14 00:41:19,206 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-02-14 00:41:19,206 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:41:19,245 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:19,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:19,247 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:41:19,284 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:41:19,288 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f54919a0410> has no local changes
2026-02-14 00:41:19,288 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:41:19,294 [ scc.git] DEBUG [detached HEAD 6192cb4] merge master -Dorg -Ssuccess-only
2026-02-14 00:41:19,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:41:19,294 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:41:19,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-02-14 00:41:20,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-02-14 00:41:20,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-02-14 00:41:21,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-14 00:41:21,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:22,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-14 00:41:22,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:22,611 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-14 00:41:23,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-02-14 00:41:23,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-02-14 00:41:24,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-14 00:41:24,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:25,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-14 00:41:25,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:25,442 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-14 00:41:25,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-02-14 00:41:26,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-02-14 00:41:26,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-14 00:41:27,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:27,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-14 00:41:28,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:28,302 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-14 00:41:28,302 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:41:28,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-14 00:41:28,302 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:28,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:28,305 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:41:28,307 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:41:28,307 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:41:28,310 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:41:28,317 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-02-14 00:41:28,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-02-14 00:41:28,938 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-02-14 00:41:29,211 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-14 00:41:29,211 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-02-14 00:41:29,215 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-02-14 00:41:29,485 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-14 00:41:29,485 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-02-14 00:41:29,489 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-02-14 00:41:29,743 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-14 00:41:29,743 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-02-14 00:41:29,747 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:41:29,747 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:29,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:29,749 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-14 00:41:29,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:29,755 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-14 00:41:29,767 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-02-14 00:41:29,767 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-02-14 00:41:29,767 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-14 00:41:29,767 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-14 00:41:29,768 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-14 00:41:29,768 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-14 00:41:29,770 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-14 00:41:29,774 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-14 00:41:29,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:29,924 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-14 00:41:29,928 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-14 00:41:29,931 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#57](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-02-14 00:41:29,933 [ scc.config] DEBUG Found github.token
2026-02-14 00:41:29,933 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-02-14 00:41:29,933 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-14 00:41:29,936 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:29,939 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-14 00:41:29,952 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-14 00:41:29,952 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-14 00:41:29,952 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-02-14 00:41:29,952 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-14 00:41:29,952 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-14 00:41:29,955 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-14 00:41:29,959 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-14 00:41:30,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:30,356 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-14 00:41:30,360 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-14 00:41:30,363 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#57](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-02-14 00:41:30,365 [ scc.config] DEBUG Found github.token
2026-02-14 00:41:30,365 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-02-14 00:41:30,365 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-14 00:41:30,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:30,370 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-14 00:41:30,377 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:30,381 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-02-14 00:41:30,381 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-02-14 00:41:30,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:30,756 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:41:30,794 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:30,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:30,796 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:41:30,834 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:41:30,837 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5492aaf8d0> has no local changes
2026-02-14 00:41:30,837 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:41:30,843 [ scc.git] DEBUG [detached HEAD 3c1fc66] merge master -Dorg -Ssuccess-only
2026-02-14 00:41:30,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:41:30,844 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:41:31,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-02-14 00:41:31,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-02-14 00:41:32,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-14 00:41:32,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:33,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:33,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-14 00:41:34,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:34,112 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:41:34,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-02-14 00:41:34,588 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:41:35,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-14 00:41:35,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:36,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:36,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-14 00:41:37,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:37,152 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-14 00:41:37,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-02-14 00:41:37,643 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:41:38,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-14 00:41:38,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:39,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:39,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-14 00:41:40,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:40,166 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-14 00:41:40,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-02-14 00:41:41,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-02-14 00:41:41,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-02-14 00:41:42,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-02-14 00:41:42,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-02-14 00:41:42,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-02-14 00:41:43,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-02-14 00:41:43,448 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:41:43,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-14 00:41:43,448 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:43,448 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:43,451 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:41:43,453 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:41:43,453 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:41:43,455 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:41:43,458 [ scc.git] DEBUG Already up to date.
2026-02-14 00:41:43,458 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-02-14 00:41:43,724 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-14 00:41:43,725 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-02-14 00:41:43,728 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-02-14 00:41:43,979 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-14 00:41:43,979 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-02-14 00:41:43,984 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-02-14 00:41:44,241 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-14 00:41:44,241 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-02-14 00:41:44,245 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:41:44,245 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:44,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:44,247 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-14 00:41:44,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:44,252 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-14 00:41:44,259 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:44,262 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-02-14 00:41:44,262 [ scc.git] DEBUG package.json | 2 +-
2026-02-14 00:41:44,262 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-02-14 00:41:44,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:44,403 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-02-14 00:41:44,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:44,408 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-02-14 00:41:44,416 [ scc.git] DEBUG Auto-merging package-lock.json
2026-02-14 00:41:44,416 [ scc.git] DEBUG Auto-merging package.json
2026-02-14 00:41:44,417 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:44,420 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-02-14 00:41:44,420 [ scc.git] DEBUG package.json | 2 +-
2026-02-14 00:41:44,420 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-02-14 00:41:44,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:44,808 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-14 00:41:44,811 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:44,813 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-14 00:41:44,821 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:44,823 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:41:44,824 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:41:45,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:45,208 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:41:45,245 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:45,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:45,247 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:41:45,286 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:41:45,290 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f54919aba10> has no local changes
2026-02-14 00:41:45,290 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:41:45,295 [ scc.git] DEBUG [detached HEAD b1e507c] merge master -Dorg -Ssuccess-only
2026-02-14 00:41:45,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:41:45,296 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:41:45,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-02-14 00:41:46,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-02-14 00:41:46,211 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:41:46,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-14 00:41:47,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:47,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:48,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-14 00:41:48,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:41:48,769 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:41:48,769 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:41:48,769 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-14 00:41:48,769 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:48,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:48,772 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:41:48,774 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:41:48,774 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:41:48,777 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:41:48,780 [ scc.git] DEBUG Already up to date.
2026-02-14 00:41:48,780 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-02-14 00:41:49,050 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-02-14 00:41:49,050 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-02-14 00:41:49,054 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:41:49,054 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:49,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:49,056 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-14 00:41:49,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:49,061 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-14 00:41:49,067 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:49,070 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:41:49,070 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:41:49,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:49,222 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:41:49,261 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:49,261 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:49,263 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:41:49,301 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:41:49,304 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5491970a50> has no local changes
2026-02-14 00:41:49,304 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:41:49,310 [ scc.git] DEBUG [detached HEAD e57f955] merge master -Dorg -Ssuccess-only
2026-02-14 00:41:49,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:41:49,311 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:41:49,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-02-14 00:41:50,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-02-14 00:41:50,293 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:41:50,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-14 00:41:51,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:51,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:52,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-14 00:41:52,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:53,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-14 00:41:53,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-02-14 00:41:53,766 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:41:54,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-02-14 00:41:54,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-02-14 00:41:55,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-14 00:41:55,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:56,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:41:56,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-14 00:41:57,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-02-14 00:41:57,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-14 00:41:58,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-02-14 00:41:58,248 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-02-14 00:41:58,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-02-14 00:41:58,731 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:41:58,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-14 00:41:58,731 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:58,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:58,734 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:41:58,736 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:41:58,736 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:41:58,738 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:41:58,741 [ scc.git] DEBUG Already up to date.
2026-02-14 00:41:58,741 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-02-14 00:41:59,176 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-14 00:41:59,176 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-02-14 00:41:59,180 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-02-14 00:41:59,433 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-14 00:41:59,433 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-02-14 00:41:59,437 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:41:59,437 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:41:59,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:59,440 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-14 00:41:59,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:59,445 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-14 00:41:59,452 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:59,455 [ scc.git] DEBUG setup.py | 4 +-
2026-02-14 00:41:59,455 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-02-14 00:41:59,455 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-02-14 00:41:59,455 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-02-14 00:41:59,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:41:59,610 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-02-14 00:41:59,612 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:41:59,615 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-02-14 00:41:59,621 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:41:59,624 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:41:59,624 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:42:00,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:00,009 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:00,047 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:00,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:00,049 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:00,086 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:00,089 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5492ba58d0> has no local changes
2026-02-14 00:42:00,090 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:00,095 [ scc.git] DEBUG [detached HEAD 76f4943] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:00,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:00,095 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:00,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-02-14 00:42:01,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-02-14 00:42:01,125 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:42:01,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-14 00:42:02,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:02,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:03,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-14 00:42:03,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:03,692 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:04,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-02-14 00:42:04,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-02-14 00:42:05,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-14 00:42:05,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:06,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-14 00:42:06,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:06,499 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-14 00:42:06,499 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:06,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-14 00:42:06,499 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:06,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:06,502 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:06,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:06,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:06,506 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:06,509 [ scc.git] DEBUG Already up to date.
2026-02-14 00:42:06,509 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-14 00:42:06,806 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-14 00:42:06,806 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-14 00:42:06,809 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-14 00:42:07,069 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-14 00:42:07,069 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-14 00:42:07,073 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:07,073 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:07,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:07,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-14 00:42:07,078 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:07,081 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-14 00:42:07,088 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG Auto-merging setup.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-02-14 00:42:07,088 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-14 00:42:07,089 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-14 00:42:07,091 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-14 00:42:07,095 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-02-14 00:42:07,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:07,239 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-14 00:42:07,242 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-14 00:42:07,245 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#57](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/urls.py
--conflicts
2026-02-14 00:42:07,247 [ scc.config] DEBUG Found github.token
2026-02-14 00:42:07,247 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-02-14 00:42:07,247 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-14 00:42:07,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:07,252 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-14 00:42:07,258 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:42:07,261 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:42:07,261 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:42:07,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:07,640 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:07,680 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:07,680 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:07,682 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:07,720 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:07,724 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f54919ced50> has no local changes
2026-02-14 00:42:07,724 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:07,730 [ scc.git] DEBUG [detached HEAD 2a54f74] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:07,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:07,730 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:08,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-02-14 00:42:08,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-02-14 00:42:09,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-02-14 00:42:09,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-02-14 00:42:10,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-02-14 00:42:10,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:11,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:11,083 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:11,083 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-14 00:42:11,083 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:11,083 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:11,085 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:11,088 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:11,088 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:11,090 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:11,097 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-02-14 00:42:11,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-02-14 00:42:12,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-02-14 00:42:13,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-02-14 00:42:13,341 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:13,341 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:13,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:13,343 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:13,383 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:13,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:13,385 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:13,422 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:13,425 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f54919e4b90> has no local changes
2026-02-14 00:42:13,425 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:13,431 [ scc.git] DEBUG [detached HEAD 8a636bc] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:13,431 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:13,431 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:13,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-02-14 00:42:14,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-02-14 00:42:14,341 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:42:14,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-14 00:42:15,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:15,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:16,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-14 00:42:16,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:16,717 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:16,718 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:16,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-14 00:42:16,718 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:16,718 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:16,720 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:16,723 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:16,723 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:16,725 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:16,728 [ scc.git] DEBUG Already up to date.
2026-02-14 00:42:16,728 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-14 00:42:16,998 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-02-14 00:42:16,998 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-14 00:42:17,002 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:17,002 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:17,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:17,005 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-14 00:42:17,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:17,009 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-14 00:42:17,016 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:42:17,018 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:42:17,018 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:42:17,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:17,178 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:17,215 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:17,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:17,217 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:17,253 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:17,256 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f549199eb90> has no local changes
2026-02-14 00:42:17,256 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:17,262 [ scc.git] DEBUG [detached HEAD 8414356] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:17,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:17,262 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:17,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-02-14 00:42:18,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-02-14 00:42:18,173 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:42:18,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-14 00:42:19,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:19,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:20,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-14 00:42:20,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:20,657 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:20,657 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:20,657 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-14 00:42:20,657 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:20,657 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:20,659 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:20,662 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:20,662 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:20,664 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:20,671 [ scc.git] DEBUG Updating deab817..160d894
2026-02-14 00:42:21,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-02-14 00:42:21,376 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-14 00:42:21,651 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-02-14 00:42:21,651 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-14 00:42:21,654 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:21,654 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:21,654 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:21,657 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-14 00:42:21,659 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:21,661 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-14 00:42:21,667 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:42:21,670 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:42:21,670 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:42:21,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:21,826 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:21,864 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:21,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:21,867 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:21,903 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:21,906 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5491a0fe90> has no local changes
2026-02-14 00:42:21,906 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:21,911 [ scc.git] DEBUG [detached HEAD 774ba48] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:21,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:21,912 [ scc.git] INFO Overriding base-branch from master to main
2026-02-14 00:42:21,912 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:22,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-02-14 00:42:22,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-02-14 00:42:23,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-02-14 00:42:23,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-14 00:42:24,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:24,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:25,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-14 00:42:25,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:25,866 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-02-14 00:42:26,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-02-14 00:42:26,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-02-14 00:42:27,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-02-14 00:42:27,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-14 00:42:28,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:28,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-14 00:42:29,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:29,350 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-14 00:42:29,350 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:29,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-14 00:42:29,350 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:29,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:29,353 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-02-14 00:42:29,355 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:29,355 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-02-14 00:42:29,358 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-02-14 00:42:29,364 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-02-14 00:42:30,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-02-14 00:42:30,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-02-14 00:42:30,836 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-02-14 00:42:31,270 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-14 00:42:31,270 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-02-14 00:42:31,274 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-02-14 00:42:31,537 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-14 00:42:31,537 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-02-14 00:42:31,540 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:31,540 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:31,540 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:31,543 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-14 00:42:31,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:31,547 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-14 00:42:31,556 [ scc.git] DEBUG Auto-merging README.rst
2026-02-14 00:42:31,556 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-02-14 00:42:31,556 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-02-14 00:42:31,556 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-14 00:42:31,556 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-14 00:42:31,556 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-14 00:42:31,559 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-14 00:42:31,563 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-02-14 00:42:31,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:31,710 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-14 00:42:31,713 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-14 00:42:31,715 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#57](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-02-14 00:42:31,717 [ scc.config] DEBUG Found github.token
2026-02-14 00:42:31,717 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-02-14 00:42:31,717 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-14 00:42:31,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:31,722 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-14 00:42:31,730 [ scc.git] DEBUG Auto-merging README.rst
2026-02-14 00:42:31,730 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-14 00:42:31,730 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:42:31,733 [ scc.git] DEBUG README.rst | 3 +
2026-02-14 00:42:31,733 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-02-14 00:42:31,733 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-02-14 00:42:31,733 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-02-14 00:42:31,733 [ scc.git] DEBUG setup.py | 5 +-
2026-02-14 00:42:31,733 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-02-14 00:42:31,733 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-02-14 00:42:32,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:32,121 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:32,160 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:32,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:32,162 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:32,199 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:32,202 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f54919c7b10> has no local changes
2026-02-14 00:42:32,202 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:32,208 [ scc.git] DEBUG [detached HEAD 30e8c2f] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:32,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:32,208 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:32,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-02-14 00:42:33,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-02-14 00:42:33,081 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:42:33,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-14 00:42:34,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:34,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:35,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-14 00:42:35,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:35,672 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:35,672 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:35,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-14 00:42:35,672 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:35,672 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:35,674 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:35,677 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:35,677 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:35,679 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:35,682 [ scc.git] DEBUG Already up to date.
2026-02-14 00:42:35,682 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-02-14 00:42:35,952 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-02-14 00:42:35,952 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-02-14 00:42:35,956 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:35,956 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:35,956 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:35,959 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-14 00:42:35,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:35,963 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-14 00:42:35,969 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:42:35,972 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:42:35,972 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:42:36,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:36,105 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:36,143 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:36,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:36,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:36,183 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:36,186 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f54919fb690> has no local changes
2026-02-14 00:42:36,186 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:36,192 [ scc.git] DEBUG [detached HEAD 31d26a7] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:36,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:36,192 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:36,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-02-14 00:42:37,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-02-14 00:42:37,097 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-14 00:42:37,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-14 00:42:38,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-14 00:42:38,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-14 00:42:39,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-14 00:42:39,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-02-14 00:42:39,566 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:39,566 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:39,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-14 00:42:39,566 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:39,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:39,569 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:39,572 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:39,572 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:39,574 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:39,577 [ scc.git] DEBUG Already up to date.
2026-02-14 00:42:39,577 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-02-14 00:42:39,988 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-02-14 00:42:39,988 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-02-14 00:42:39,992 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:39,992 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:39,992 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:39,994 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-14 00:42:39,997 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:39,999 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-14 00:42:40,006 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-14 00:42:40,009 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-14 00:42:40,009 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-14 00:42:40,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:40,146 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:40,187 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:40,187 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:40,189 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:40,227 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:40,231 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5491977a10> has no local changes
2026-02-14 00:42:40,231 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:40,236 [ scc.git] DEBUG [detached HEAD 7969eb2] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:40,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:40,237 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:40,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-02-14 00:42:40,570 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:40,570 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-14 00:42:40,570 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:40,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:40,573 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-14 00:42:40,575 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:40,575 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-14 00:42:40,577 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-14 00:42:40,580 [ scc.git] DEBUG Already up to date.
2026-02-14 00:42:40,580 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:40,580 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:40,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:40,582 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:40,618 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:40,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:40,621 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:40,655 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:40,658 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5491a4f690> has no local changes
2026-02-14 00:42:40,658 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:40,663 [ scc.git] DEBUG [detached HEAD 3abf9d2] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:40,664 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:40,664 [ scc.git] INFO Overriding base-branch from master to develop
2026-02-14 00:42:40,664 [ scc.repo] DEBUG ## PRs found:
2026-02-14 00:42:41,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-02-14 00:42:41,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-02-14 00:42:42,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-02-14 00:42:42,041 [ scc.repo] DEBUG ## Branches found:
2026-02-14 00:42:42,041 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-14 00:42:42,041 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:42,041 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:42,043 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-02-14 00:42:42,046 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-14 00:42:42,046 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-02-14 00:42:42,049 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-02-14 00:42:42,060 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-02-14 00:42:42,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-02-14 00:42:43,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-02-14 00:42:43,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-02-14 00:42:44,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-02-14 00:42:45,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-02-14 00:42:45,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-02-14 00:42:46,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-02-14 00:42:46,534 [ scc.git] DEBUG ## Unique users: []
2026-02-14 00:42:46,534 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:46,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:46,536 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-14 00:42:46,575 [ scc.git] DEBUG Get sha1 of %s
2026-02-14 00:42:46,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-14 00:42:46,578 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:46,615 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:46,619 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5490071190> has no local changes
2026-02-14 00:42:46,619 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:46,625 [ scc.git] DEBUG [detached HEAD 16bda28] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:46,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:46,625 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-14 00:42:46,694 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-02-14 00:42:46,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:46,935 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-02-14 00:42:46,937 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-02-14 00:42:47,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:47,327 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-02-14 00:42:47,329 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-02-14 00:42:47,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:47,727 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-02-14 00:42:47,728 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-02-14 00:42:48,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:48,116 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-02-14 00:42:48,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:48,503 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-02-14 00:42:48,505 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-02-14 00:42:48,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:48,906 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-02-14 00:42:48,908 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-02-14 00:42:49,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:49,312 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-02-14 00:42:49,315 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-02-14 00:42:49,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:49,704 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-02-14 00:42:49,706 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-02-14 00:42:50,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:50,103 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-02-14 00:42:50,105 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-02-14 00:42:50,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:50,498 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-02-14 00:42:50,500 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-02-14 00:42:50,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:50,898 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-02-14 00:42:50,901 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-02-14 00:42:51,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:51,285 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-02-14 00:42:51,287 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-02-14 00:42:51,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:51,680 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-02-14 00:42:52,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:52,067 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-02-14 00:42:52,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:52,461 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-02-14 00:42:52,463 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-02-14 00:42:52,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:52,861 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-02-14 00:42:53,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:53,255 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-02-14 00:42:53,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:53,645 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-02-14 00:42:53,647 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-02-14 00:42:54,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:54,028 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-02-14 00:42:54,030 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-02-14 00:42:54,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:54,416 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-02-14 00:42:54,418 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-02-14 00:42:54,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:54,809 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-02-14 00:42:54,811 [ scc.config] DEBUG Found submodule.scripts.url
2026-02-14 00:42:55,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-14 00:42:55,195 [ scc.config] DEBUG Found submodule.scripts.branch
2026-02-14 00:42:55,195 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-14 00:42:55,270 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5492a96650> has local changes
2026-02-14 00:42:55,270 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9530c10
Previously merged:
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' (status: failure)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..e241dc01
Previously merged:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 662 will-moore 'Export script runnable without OMERO'
- PR 663 will-moore 'Zarr'
- PR 666 will-moore 'Standalone app'
- PR 667 Tom-TBT 'Label suggestion interface'
Conflicting PRs (not included):
- PR 664 Nirkan 'Handle many channels '
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#57 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/57/)'
2026-02-14 00:42:55,281 [ scc.git] DEBUG [detached HEAD c4b281c] merge master -Dorg -Ssuccess-only
2026-02-14 00:42:55,281 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-02-14 00:42:55,282 [ scc.merge] INFO Repository: ome/omero-plugins
2026-02-14 00:42:55,282 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-02-14 00:42:55,282 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-02-14 00:42:55,282 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-02-14 00:42:55,282 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-02-14 00:42:55,282 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-02-14 00:42:55,282 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-02-14 00:42:55,282 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-02-14 00:42:55,282 [ scc.merge] INFO
2026-02-14 00:42:55,282 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,282 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-02-14 00:42:55,283 [ scc.merge] INFO
2026-02-14 00:42:55,283 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-02-14 00:42:55,283 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-02-14 00:42:55,283 [ scc.merge] INFO Updating 11d3587..9530c10
2026-02-14 00:42:55,283 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:42:55,283 [ scc.merge] INFO
2026-02-14 00:42:55,283 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-02-14 00:42:55,283 [ scc.merge] INFO
2026-02-14 00:42:55,283 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-02-14 00:42:55,283 [ scc.merge] INFO
2026-02-14 00:42:55,283 [ scc.merge] INFO Repository: ome/omero-figure
2026-02-14 00:42:55,283 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' (status: failure)
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-02-14 00:42:55,283 [ scc.merge] INFO Updating 9cc36cde..e241dc01
2026-02-14 00:42:55,283 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-02-14 00:42:55,283 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-02-14 00:42:55,284 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Repository: ome/omero-gallery
2026-02-14 00:42:55,284 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-02-14 00:42:55,284 [ scc.merge] INFO
2026-02-14 00:42:55,284 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-02-14 00:42:55,284 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-02-14 00:42:55,285 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-02-14 00:42:55,285 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-02-14 00:42:55,285 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Repository: ome/omero-mapr
2026-02-14 00:42:55,285 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-02-14 00:42:55,285 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Repository: ome/omero-metadata
2026-02-14 00:42:55,285 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-02-14 00:42:55,285 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,285 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,285 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-14 00:42:55,285 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Repository: ome/omero-parade
2026-02-14 00:42:55,286 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-02-14 00:42:55,286 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-02-14 00:42:55,286 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Repository: ome/omero-rois
2026-02-14 00:42:55,286 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-14 00:42:55,286 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Repository: ome/omero-signup
2026-02-14 00:42:55,286 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-14 00:42:55,286 [ scc.merge] INFO
2026-02-14 00:42:55,286 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-02-14 00:42:55,286 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-02-14 00:42:55,286 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-02-14 00:42:55,286 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-02-14 00:42:55,287 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Repository: ome/omero-upload
2026-02-14 00:42:55,287 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-02-14 00:42:55,287 [ scc.merge] INFO Updating deab817..160d894
2026-02-14 00:42:55,287 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-02-14 00:42:55,287 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-02-14 00:42:55,287 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-02-14 00:42:55,287 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-02-14 00:42:55,287 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-02-14 00:42:55,287 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Merged PRs:
2026-02-14 00:42:55,287 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,287 [ scc.merge] INFO
2026-02-14 00:42:55,287 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-02-14 00:42:55,288 [ scc.merge] INFO Already up to date.
2026-02-14 00:42:55,288 [ scc.merge] INFO
2026-02-14 00:42:55,288 [ scc.merge] INFO
2026-02-14 00:42:55,288 [ scc.merge] INFO Repository: ome/scripts
2026-02-14 00:42:55,288 [ scc.merge] INFO Excluded PRs:
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-02-14 00:42:55,288 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-02-14 00:42:55,288 [ scc.merge] INFO Previously merged:
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-02-14 00:42:55,288 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-02-14 00:42:55,288 [ scc.merge] INFO
2026-02-14 00:42:55,288 [ scc.merge] INFO
2026-02-14 00:42:55,288 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-02-14 00:42:55,288 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-02-14 00:42:55,290 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-02-14 00:42:55,292 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-02-14 00:42:55,294 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-02-14 00:42:55,296 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-02-14 00:42:55,298 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-02-14 00:42:55,300 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-02-14 00:42:55,302 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-02-14 00:42:55,304 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-14 00:42:55,307 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-14 00:42:55,309 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-14 00:42:55,311 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-14 00:42:55,313 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-14 00:42:55,315 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-14 00:42:55,317 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-14 00:42:55,319 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-14 00:42:55,321 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-14 00:42:55,323 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-14 00:42:55,325 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-14 00:42:55,327 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-14 00:42:55,330 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-14 00:42:55,332 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,334 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-14 00:42:55,334 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-14 00:42:55,334 [ scc.git] DEBUG Calling 'git remote'
2026-02-14 00:42:55,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 8816e47] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 31a1ef9] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-02-14 00:43:41,556 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-02-14 00:43:50,739 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-02-14 00:43:53,489 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-14 00:43:58,084 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-14 00:44:38,198 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
