16:17:37Started by upstream project "Trigger" build number 116:17:37originally caused by:
16:17:37 Started by user devspace16:17:37Running as SYSTEM
16:17:37Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
16:17:37The recommended git tool is: NONE
16:17:37No credentials specified
16:17:37Cloning the remote Git repository
16:17:37Cloning repository https://github.com/ome/openmicroscopy.git16:17:37 > git init /home/omero/workspace/OMERO-push/src # timeout=10
16:17:37Fetching upstream changes from https://github.com/ome/openmicroscopy.git16:17:37 > git --version # timeout=10
16:17:37 > git --version # 'git version 2.39.3'
16:17:37 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:20:55 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
16:20:55 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
16:20:55Avoid second fetch
16:20:55 > git rev-parse origin/develop^{commit} # timeout=10
16:20:55Checking out Revision 8398c91cfbb1f0e7a0ac1be24898132799639e3c (origin/develop)
16:20:55 > git config core.sparsecheckout # timeout=10
16:20:55 > git checkout -f 8398c91cfbb1f0e7a0ac1be24898132799639e3c # timeout=30
16:20:55Commit message: "Merge pull request #6373 from jburel/relase_5.6.10"
16:20:55First time build. Skipping changelog.
16:20:55Cleaning workspace
16:20:55 > git rev-parse --verify HEAD # timeout=10
16:20:55Resetting working tree
16:20:55 > git reset --hard # timeout=10
16:20:56 > git clean -fdx # timeout=10
16:20:56Copied 1 artifact from "OMERO-python-superbuild-build" build number 116:20:56[OMERO-push] $ /bin/bash -xe /tmp/jenkins17695829543260386219.sh
16:20:56+ python3 -mvenv venv
16:20:59+ source /home/omero/workspace/OMERO-push/venv/bin/activate
16:20:59++ deactivate nondestructive
16:20:59++ '[' -n '' ']'
16:20:59++ '[' -n '' ']'
16:20:59++ '[' -n /bin/bash -o -n '' ']'
16:20:59++ hash -r
16:20:59++ '[' -n '' ']'
16:20:59++ unset VIRTUAL_ENV
16:20:59++ '[' '!' nondestructive = nondestructive ']'
16:20:59++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
16:20:59++ export VIRTUAL_ENV
16:20:59++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:20:59++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:20:59++ export PATH
16:20:59++ '[' -n '' ']'
16:20:59++ '[' -z '' ']'
16:20:59++ _OLD_VIRTUAL_PS1=
16:20:59++ PS1='(venv) '
16:20:59++ export PS1
16:20:59++ '[' -n /bin/bash -o -n '' ']'
16:20:59++ hash -r
16:20:59+ pip install -U pip
16:20:59Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
16:20:59Collecting pip
16:20:59 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
16:20:59Installing collected packages: pip
16:20:59 Attempting uninstall: pip
16:20:59 Found existing installation: pip 21.2.3
16:20:59 Uninstalling pip-21.2.3:
16:20:59 Successfully uninstalled pip-21.2.3
16:21:01Successfully installed pip-24.0
16:21:01+ pip install -U scc
16:21:01Collecting scc
16:21:01 Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB)
16:21:02Collecting PyGithub>=1.54 (from scc)
16:21:02 Using cached PyGithub-2.2.0-py3-none-any.whl.metadata (3.8 kB)
16:21:02Collecting PyYAML>=5.1 (from scc)
16:21:02 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
16:21:02Collecting future (from scc)
16:21:02 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
16:21:02Collecting ruamel.yaml (from scc)
16:21:02 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
16:21:02Collecting ruamel.yaml.jinja2 (from scc)
16:21:02 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
16:21:02Collecting six (from scc)
16:21:02 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
16:21:02Collecting urllib3<2 (from scc)
16:21:02 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
16:21:02Collecting yaclifw<0.3,>=0.2.0 (from scc)
16:21:02 Using cached yaclifw-0.2.0-py3-none-any.whl
16:21:02Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
16:21:02 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
16:21:02Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
16:21:02 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
16:21:02Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:21:02 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
16:21:02Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
16:21:02 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
16:21:02Collecting Deprecated (from PyGithub>=1.54->scc)
16:21:02 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
16:21:02Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
16:21:02 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
16:21:03Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
16:21:03 Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
16:21:03Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
16:21:03 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
16:21:03Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:21:03 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
16:21:03Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:21:03 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
16:21:03Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
16:21:03 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
16:21:03Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
16:21:03 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
16:21:03Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
16:21:03 Using cached pycparser-2.21-py2.py3-none-any.whl.metadata (1.1 kB)
16:21:03Using cached scc-0.19.1-py3-none-any.whl (48 kB)
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16:21:03Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
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16:21:03Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
16:21:03Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
16:21:03Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
16:21:03Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
16:21:03Using cached requests-2.31.0-py3-none-any.whl (62 kB)
16:21:03Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
16:21:03Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
16:21:03Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
16:21:03Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
16:21:03Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
16:21:03Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
16:21:03Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB)
16:21:03Using cached idna-3.6-py3-none-any.whl (61 kB)
16:21:03Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
16:21:03Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB)
16:21:04Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
16:21:05Successfully installed Deprecated-1.2.14 PyGithub-2.2.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.5 future-1.0.0 idna-3.6 pycparser-2.21 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.10.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0
16:21:06+ test -e src
16:21:06+ cd src
16:21:06++ git config github.user
16:21:06+ user=snoopycrimecop
16:21:06+ scc merge develop --no-ask --reset --shallow -S success-only
16:21:092024-03-14 16:21:09,949 [ scc.merge] INFO Merging Pull Request(s) based on develop
16:21:092024-03-14 16:21:09,950 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
16:21:092024-03-14 16:21:09,950 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
16:21:092024-03-14 16:21:09,950 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
16:21:092024-03-14 16:21:09,950 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
16:21:092024-03-14 16:21:09,950 [ scc.merge] INFO Excluding Pull Request(s) without successful status
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO Repository: ome/openmicroscopy
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO Excluded PRs:
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO Already up to date.
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO Merged PRs:
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6309 jburel 'add try block'
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6376 snoopycrimecop 'update dependencies'
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6377 sbesson 'Removal of python-future compatibility'
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6378 DavidStirling 'Update tests for revised webclient annotations json'
16:21:332024-03-14 16:21:33,151 [ scc.merge] INFO
16:21:33+ cp etc/omero.properties etc/omero.properties.bak
16:21:33+ rm etc/omero.properties
16:21:33+ touch etc/omero.properties
16:21:33++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
16:21:33+ ne=210
16:21:33++ sed -n 1,210p etc/omero.properties.bak
16:21:33+ line='##
16:21:33## omero.properties
16:21:33## ----------------
16:21:33##
16:21:33## DO NOT EDIT!
16:21:33##
16:21:33##
16:21:33## Any of these properties can be altered by using `omero config`. MODIFYING
16:21:33## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:21:33## at compile time!
16:21:33##
16:21:33## For an overview of these properties, see
16:21:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:21:33##
16:21:33## Properties marked with "DEVELOPMENT" should not be used in production.
16:21:3316:21:33# Comma separated list of Ice transports available to clients. The default
16:21:33# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:21:33# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:21:33# will prevent all non-encrypted connections to the OMERO server.
16:21:33#
16:21:33# Additionally, there are two experimental values for using websockets:
16:21:33# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:21:33# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:21:33# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:21:33#
16:21:33# Note: When using websockets behind a web server like nginx, additional
16:21:33# configuration may be needed.
16:21:33omero.client.icetransports=ssl,tcp
16:21:3316:21:33# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:21:33# server
16:21:33omero.ports.prefix=
16:21:3316:21:33# The Glacier2 SSL port number to use
16:21:33omero.ports.ssl=4064
16:21:3316:21:33# The Glacier2 TCP port number to use (unencrypted)
16:21:33omero.ports.tcp=4063
16:21:3316:21:33# The Glacier2 WSS port number to use
16:21:33omero.ports.wss=4066
16:21:3316:21:33# The Glacier2 WS port number to use (unencrypted)
16:21:33omero.ports.ws=4065
16:21:3316:21:33# The IceGrid registry port number to use
16:21:33omero.ports.registry=4061
16:21:3316:21:33#############################################
16:21:33## JVM configuration
16:21:33##
16:21:33## Note: changes to the omero.jvmcfg properties
16:21:33## will *not* be reflected in the compiled server
16:21:33## since they are defined in a Python file.
16:21:33#############################################
16:21:33## (For documentation only)
16:21:33# Memory strategy which will be used by default.
16:21:33# Options include: percent, manual
16:21:33omero.jvmcfg.strategy=percent
16:21:3316:21:33## (For documentation only)
16:21:33# Explicit value for the `-Xmx` argument, e.g.
16:21:33# "1g"
16:21:33omero.jvmcfg.heap_size=
16:21:3316:21:33## (For documentation only)
16:21:33# Explicit value for the MaxPermSize argument
16:21:33# to the JVM, e.g. "500M". Ignored for Java8+
16:21:33omero.jvmcfg.perm_gen=
16:21:3316:21:33## (For documentation only)
16:21:33# Toggles on or off heap dumps on OOMs. Default is "off".
16:21:33# The special value "tmp" will create the heap dumps in
16:21:33# your temp directory.
16:21:33omero.jvmcfg.heap_dump=
16:21:3316:21:33## (For documentation only)
16:21:33# Used only by the percent strategy. An integer between 0
16:21:33# and 100 which is the percent of active memory that will
16:21:33# be used by the service.
16:21:33omero.jvmcfg.percent=
16:21:3316:21:33## (For documentation only)
16:21:33# Contains other parameters which should be passed to the
16:21:33# JVM. The value of "append" is treated as if it were on
16:21:33# the command line so will be separated on whitespace.
16:21:33# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:21:33# results in two new arguments.
16:21:33# Note that when using `config set` from the command line
16:21:33# one may need to give a prior `--` option to prevent a value
16:21:33# starting with `-` from already being parsed as an option,
16:21:33# and values may need quoting to prevent whitespace or other
16:21:33# significant characters from being interpreted prematurely.
16:21:3316:21:33omero.jvmcfg.append=
16:21:3316:21:33## (For documentation only)
16:21:33# Manual override of the total system memory that
16:21:33# OMERO will *think* is present on the local OS (MB).
16:21:33# If unset, an attempt will be made to detect the actual
16:21:33# amount: first by using the Python library `psutil` and
16:21:33# if that is not installed, by running a Java tool. If
16:21:33# neither works, 4.0GB is assumed.
16:21:33omero.jvmcfg.system_memory=
16:21:3316:21:33## (For documentation only)
16:21:33# Suggestion for strategies as to the minimum memory
16:21:33# that they will use for calculating JVM settings (MB).
16:21:33omero.jvmcfg.min_system_memory=3414
16:21:3316:21:33## (For documentation only)
16:21:33# Suggestion for strategies as to the maximum memory
16:21:33# that they will use for calculating JVM settings (MB).
16:21:33omero.jvmcfg.max_system_memory=48000
16:21:3316:21:3316:21:33#############################################
16:21:33## Ice overrides
16:21:33##
16:21:33## Though not used directly by OMERO, a number
16:21:33## of properties prefixed with "Ice.*" will
16:21:33## alter the behavior of the OMERO runtime
16:21:33## by configuring the Ice communicators. For a
16:21:33## full listing see:
16:21:33##
16:21:33## http://doc.zeroc.com/display/Ice/Property+Reference16:21:33## For more information see
16:21:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:21:33#############################################
16:21:3316:21:33# Disable IPv6 by setting to 0. Only needed in
16:21:33# certain situations.
16:21:33Ice.IPv6=1
16:21:3316:21:33# Glacier2Template IceSSL defaults and overrides,
16:21:33# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
16:21:33# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:21:33# update the corresponding IceSSL. property.
16:21:33omero.glacier2.IceSSL=
16:21:3316:21:33# Glacier2Template SSL maximum allowed protocol (mac bug)
16:21:33omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:21:33# Glacier2Template SSL allowed cipher suites
16:21:33omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:21:33# Glacier2Template SSL verification requirements
16:21:33omero.glacier2.IceSSL.VerifyPeer=0
16:21:33# Glacier2Template SSL allowed protocols
16:21:33omero.glacier2.IceSSL.Protocols=tls1
16:21:3316:21:33# Override the default set of OMERO services.
16:21:33# For example, to run OMERO.server with Blitz and Tables only
16:21:33# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:21:33# set this to ``master:Blitz-0,Tables-0``.
16:21:33# Also use this to distribute OMERO services across multiple nodes,
16:21:33# for example:
16:21:33# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:21:33# See
16:21:33# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:21:33omero.server.nodedescriptors=
16:21:3316:21:33#############################################
16:21:33## Darwin (OS X) specific defaults for templated configuration files only.
16:21:33## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:21:33## file.
16:21:33## Do not set these properties in ``omero config``, instead set the original
16:21:33## ``xxx.yyy`` property
16:21:33#############################################
16:21:33_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:21:3316:21:3316:21:3316:21:33#############################################
16:21:33## Server product name for release artifacts
16:21:33#############################################
16:21:33product.name=OMERO.server
16:21:3316:21:33#############################################
16:21:33### Properties below this marker are ignored by
16:21:33### omero.install.config_parser.PropertyParser
16:21:33### END
16:21:3316:21:33#############################################
16:21:33## Library versions
16:21:33#############################################
16:21:33##
16:21:33versions.findbugs=1.2.1
16:21:33versions.ice36=3.6.5
16:21:33versions.ice36_lib=36
16:21:33## internal
16:21:33versions.omeroshares36=3.6.3
16:21:33versions.omeromock36=3.6.3
16:21:33versions.icedb36=3.6.3
16:21:33versions.ipython=1.2.1
16:21:3316:21:33versions.janino=2.5.10
16:21:3316:21:33versions.reportng=1.1.1
16:21:3316:21:33versions.testng=7.5
16:21:33versions.velocity=1.4
16:21:3316:21:33versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:21:33versions.omero-scripts-url=${versions.omero-pypi}
16:21:3316:21:33###
16:21:33### Appended Values
16:21:33###
16:21:3316:21:33## Internal dependencies'
16:21:33+ echo '##
16:21:33## omero.properties
16:21:33## ----------------
16:21:33##
16:21:33## DO NOT EDIT!
16:21:33##
16:21:33##
16:21:33## Any of these properties can be altered by using `omero config`. MODIFYING
16:21:33## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:21:33## at compile time!
16:21:33##
16:21:33## For an overview of these properties, see
16:21:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:21:33##
16:21:33## Properties marked with "DEVELOPMENT" should not be used in production.
16:21:3316:21:33# Comma separated list of Ice transports available to clients. The default
16:21:33# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:21:33# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:21:33# will prevent all non-encrypted connections to the OMERO server.
16:21:33#
16:21:33# Additionally, there are two experimental values for using websockets:
16:21:33# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:21:33# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:21:33# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:21:33#
16:21:33# Note: When using websockets behind a web server like nginx, additional
16:21:33# configuration may be needed.
16:21:33omero.client.icetransports=ssl,tcp
16:21:3316:21:33# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:21:33# server
16:21:33omero.ports.prefix=
16:21:3316:21:33# The Glacier2 SSL port number to use
16:21:33omero.ports.ssl=4064
16:21:3316:21:33# The Glacier2 TCP port number to use (unencrypted)
16:21:33omero.ports.tcp=4063
16:21:3316:21:33# The Glacier2 WSS port number to use
16:21:33omero.ports.wss=4066
16:21:3316:21:33# The Glacier2 WS port number to use (unencrypted)
16:21:33omero.ports.ws=4065
16:21:3316:21:33# The IceGrid registry port number to use
16:21:33omero.ports.registry=4061
16:21:3316:21:33#############################################
16:21:33## JVM configuration
16:21:33##
16:21:33## Note: changes to the omero.jvmcfg properties
16:21:33## will *not* be reflected in the compiled server
16:21:33## since they are defined in a Python file.
16:21:33#############################################
16:21:33## (For documentation only)
16:21:33# Memory strategy which will be used by default.
16:21:33# Options include: percent, manual
16:21:33omero.jvmcfg.strategy=percent
16:21:3316:21:33## (For documentation only)
16:21:33# Explicit value for the `-Xmx` argument, e.g.
16:21:33# "1g"
16:21:33omero.jvmcfg.heap_size=
16:21:3316:21:33## (For documentation only)
16:21:33# Explicit value for the MaxPermSize argument
16:21:33# to the JVM, e.g. "500M". Ignored for Java8+
16:21:33omero.jvmcfg.perm_gen=
16:21:3316:21:33## (For documentation only)
16:21:33# Toggles on or off heap dumps on OOMs. Default is "off".
16:21:33# The special value "tmp" will create the heap dumps in
16:21:33# your temp directory.
16:21:33omero.jvmcfg.heap_dump=
16:21:3316:21:33## (For documentation only)
16:21:33# Used only by the percent strategy. An integer between 0
16:21:33# and 100 which is the percent of active memory that will
16:21:33# be used by the service.
16:21:33omero.jvmcfg.percent=
16:21:3316:21:33## (For documentation only)
16:21:33# Contains other parameters which should be passed to the
16:21:33# JVM. The value of "append" is treated as if it were on
16:21:33# the command line so will be separated on whitespace.
16:21:33# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:21:33# results in two new arguments.
16:21:33# Note that when using `config set` from the command line
16:21:33# one may need to give a prior `--` option to prevent a value
16:21:33# starting with `-` from already being parsed as an option,
16:21:33# and values may need quoting to prevent whitespace or other
16:21:33# significant characters from being interpreted prematurely.
16:21:3316:21:33omero.jvmcfg.append=
16:21:3316:21:33## (For documentation only)
16:21:33# Manual override of the total system memory that
16:21:33# OMERO will *think* is present on the local OS (MB).
16:21:33# If unset, an attempt will be made to detect the actual
16:21:33# amount: first by using the Python library `psutil` and
16:21:33# if that is not installed, by running a Java tool. If
16:21:33# neither works, 4.0GB is assumed.
16:21:33omero.jvmcfg.system_memory=
16:21:3316:21:33## (For documentation only)
16:21:33# Suggestion for strategies as to the minimum memory
16:21:33# that they will use for calculating JVM settings (MB).
16:21:33omero.jvmcfg.min_system_memory=3414
16:21:3316:21:33## (For documentation only)
16:21:33# Suggestion for strategies as to the maximum memory
16:21:33# that they will use for calculating JVM settings (MB).
16:21:33omero.jvmcfg.max_system_memory=48000
16:21:3316:21:3316:21:33#############################################
16:21:33## Ice overrides
16:21:33##
16:21:33## Though not used directly by OMERO, a number
16:21:33## of properties prefixed with "Ice.*" will
16:21:33## alter the behavior of the OMERO runtime
16:21:33## by configuring the Ice communicators. For a
16:21:33## full listing see:
16:21:33##
16:21:33## http://doc.zeroc.com/display/Ice/Property+Reference16:21:33## For more information see
16:21:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:21:33#############################################
16:21:3316:21:33# Disable IPv6 by setting to 0. Only needed in
16:21:33# certain situations.
16:21:33Ice.IPv6=1
16:21:3316:21:33# Glacier2Template IceSSL defaults and overrides,
16:21:33# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
16:21:33# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:21:33# update the corresponding IceSSL. property.
16:21:33omero.glacier2.IceSSL=
16:21:3316:21:33# Glacier2Template SSL maximum allowed protocol (mac bug)
16:21:33omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:21:33# Glacier2Template SSL allowed cipher suites
16:21:33omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:21:33# Glacier2Template SSL verification requirements
16:21:33omero.glacier2.IceSSL.VerifyPeer=0
16:21:33# Glacier2Template SSL allowed protocols
16:21:33omero.glacier2.IceSSL.Protocols=tls1
16:21:3316:21:33# Override the default set of OMERO services.
16:21:33# For example, to run OMERO.server with Blitz and Tables only
16:21:33# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:21:33# set this to ``master:Blitz-0,Tables-0``.
16:21:33# Also use this to distribute OMERO services across multiple nodes,
16:21:33# for example:
16:21:33# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:21:33# See
16:21:33# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:21:33omero.server.nodedescriptors=
16:21:3316:21:33#############################################
16:21:33## Darwin (OS X) specific defaults for templated configuration files only.
16:21:33## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:21:33## file.
16:21:33## Do not set these properties in ``omero config``, instead set the original
16:21:33## ``xxx.yyy`` property
16:21:33#############################################
16:21:33_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:21:3316:21:3316:21:3316:21:33#############################################
16:21:33## Server product name for release artifacts
16:21:33#############################################
16:21:33product.name=OMERO.server
16:21:3316:21:33#############################################
16:21:33### Properties below this marker are ignored by
16:21:33### omero.install.config_parser.PropertyParser
16:21:33### END
16:21:3316:21:33#############################################
16:21:33## Library versions
16:21:33#############################################
16:21:33##
16:21:33versions.findbugs=1.2.1
16:21:33versions.ice36=3.6.5
16:21:33versions.ice36_lib=36
16:21:33## internal
16:21:33versions.omeroshares36=3.6.3
16:21:33versions.omeromock36=3.6.3
16:21:33versions.icedb36=3.6.3
16:21:33versions.ipython=1.2.1
16:21:3316:21:33versions.janino=2.5.10
16:21:3316:21:33versions.reportng=1.1.1
16:21:3316:21:33versions.testng=7.5
16:21:33versions.velocity=1.4
16:21:3316:21:33versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:21:33versions.omero-scripts-url=${versions.omero-pypi}
16:21:3316:21:33###
16:21:33### Appended Values
16:21:33###
16:21:3316:21:33## Internal dependencies'
16:21:33+ echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/16:21:33+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive16:21:33+ echo versions.scripts-prefix=
16:21:33+ echo versions.scripts=merge_ci
16:21:33+ cat /home/omero/workspace/OMERO-push/version.properties
16:21:33+ git commit -a -m 'Add version.properties to etc/omero.properties'
16:21:33[detached HEAD 603c41035d] Add version.properties to etc/omero.properties
16:21:33 1 file changed, 47 insertions(+), 7 deletions(-)
16:21:33+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
16:21:35To github.com:snoopycrimecop/openmicroscopy.git
16:21:35 + 543906beb3...603c41035d HEAD -> merge_ci (forced update)
16:21:35Finished: SUCCESS
![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
