12:14:22Started by upstream project "Trigger" build number 512:14:22originally caused by:
12:14:22 Started by user devspace12:14:22Running as SYSTEM
12:14:22Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
12:14:22The recommended git tool is: NONE
12:14:22No credentials specified
12:14:22Cloning the remote Git repository
12:14:22Cloning repository https://github.com/ome/openmicroscopy.git12:14:22 > git init /home/omero/workspace/OMERO-push/src # timeout=10
12:14:22Fetching upstream changes from https://github.com/ome/openmicroscopy.git12:14:22 > git --version # timeout=10
12:14:22 > git --version # 'git version 2.52.0'
12:14:22 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:16:18 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
12:16:18 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
12:16:18Avoid second fetch
12:16:18 > git rev-parse origin/develop^{commit} # timeout=10
12:16:18Checking out Revision 459295bae8a1813dc9fb30a674107a799113dc49 (origin/develop)
12:16:18 > git config core.sparsecheckout # timeout=10
12:16:18 > git checkout -f 459295bae8a1813dc9fb30a674107a799113dc49 # timeout=30
12:16:28Commit message: "Merge pull request #6456 from knabar/update-tree-tag-child-count"
12:16:28First time build. Skipping changelog.
12:16:28Cleaning workspace
12:16:28 > git rev-parse --verify HEAD # timeout=10
12:16:28Resetting working tree
12:16:28 > git reset --hard # timeout=10
12:16:28 > git clean -fdx # timeout=10
12:16:28Copied 1 artifact from "OMERO-python-superbuild-build" build number 112:16:28[OMERO-push] $ /bin/bash -xe /tmp/jenkins11208717215552424884.sh
12:16:28+ python3.11 -mvenv venv
12:16:48+ source /home/omero/workspace/OMERO-push/venv/bin/activate
12:16:48++ deactivate nondestructive
12:16:48++ '[' -n '' ']'
12:16:48++ '[' -n '' ']'
12:16:48++ hash -r
12:16:48++ '[' -n '' ']'
12:16:48++ unset VIRTUAL_ENV
12:16:48++ unset VIRTUAL_ENV_PROMPT
12:16:48++ '[' '!' nondestructive = nondestructive ']'
12:16:48++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
12:16:48++ export VIRTUAL_ENV
12:16:48++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:16:48++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:16:48++ export PATH
12:16:48++ '[' -n '' ']'
12:16:48++ '[' -z '' ']'
12:16:48++ _OLD_VIRTUAL_PS1=
12:16:48++ PS1='(venv) '
12:16:48++ export PS1
12:16:48++ VIRTUAL_ENV_PROMPT='(venv) '
12:16:48++ export VIRTUAL_ENV_PROMPT
12:16:48++ hash -r
12:16:48+ pip install -U pip
12:16:49Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1)
12:16:50Collecting pip
12:16:50 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
12:16:50Installing collected packages: pip
12:16:50 Attempting uninstall: pip
12:16:50 Found existing installation: pip 22.3.1
12:16:51 Uninstalling pip-22.3.1:
12:16:51 Successfully uninstalled pip-22.3.1
12:17:07Successfully installed pip-26.1.2
12:17:08+ pip install -U scc
12:17:09Collecting scc
12:17:09 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
12:17:09Collecting PyGithub>=1.54 (from scc)
12:17:09 Using cached pygithub-2.9.1-py3-none-any.whl.metadata (3.9 kB)
12:17:09Collecting PyYAML>=5.1 (from scc)
12:17:09 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:17:09Collecting future (from scc)
12:17:09 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:17:09Collecting ruamel.yaml (from scc)
12:17:09 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
12:17:09Collecting ruamel.yaml.jinja2 (from scc)
12:17:09 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
12:17:09Collecting six (from scc)
12:17:09 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:17:09Collecting urllib3<2 (from scc)
12:17:09 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
12:17:10Collecting yaclifw<0.3,>=0.2.0 (from scc)
12:17:10 Using cached yaclifw-0.2.0-py3-none-any.whl
12:17:10Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
12:17:10 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
12:17:10Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
12:17:10 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
12:17:10Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
12:17:10 Using cached pyjwt-2.13.0-py3-none-any.whl.metadata (3.4 kB)
12:17:10Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
12:17:10 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
12:17:10Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
12:17:10 Using cached cryptography-49.0.0-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB)
12:17:10Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
12:17:10 Using cached cffi-2.1.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
12:17:10Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
12:17:10 Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB)
12:17:10Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
12:17:10 Using cached charset_normalizer-3.4.8-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
12:17:10Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
12:17:10 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
12:17:10Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc)
12:17:10 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
12:17:10Using cached scc-0.20.0-py3-none-any.whl (48 kB)
12:17:10Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
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12:17:10Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
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12:17:11Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:17:11Using cached charset_normalizer-3.4.8-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:17:11Using cached idna-3.18-py3-none-any.whl (65 kB)
12:17:11Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
12:17:11Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
12:17:11Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:17:11Using cached pycparser-3.0-py3-none-any.whl (48 kB)
12:17:11Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
12:17:11Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
12:17:11Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
12:17:11Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
12:17:3012:17:30Successfully installed PyGithub-2.9.1 PyYAML-6.0.3 certifi-2026.6.17 cffi-2.1.0 charset_normalizer-3.4.8 cryptography-49.0.0 future-1.0.0 idna-3.18 pycparser-3.0 pyjwt-2.13.0 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
12:17:30+ test -e src
12:17:30+ cd src
12:17:30++ git config github.user
12:17:30+ user=snoopycrimecop
12:17:30+ scc merge develop --no-ask --reset --shallow -S success-only
12:17:352026-07-07 12:17:35,881 [ scc.merge] INFO Merging Pull Request(s) based on develop
12:17:352026-07-07 12:17:35,881 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
12:17:352026-07-07 12:17:35,881 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
12:17:352026-07-07 12:17:35,881 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
12:17:352026-07-07 12:17:35,881 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
12:17:352026-07-07 12:17:35,881 [ scc.merge] INFO Excluding Pull Request(s) without successful status
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO Repository: ome/openmicroscopy
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO Excluded PRs:
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure)
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO Already up to date.
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO Merged PRs:
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer'
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
12:18:012026-07-07 12:18:01,997 [ scc.merge] INFO
12:18:02+ cp etc/omero.properties etc/omero.properties.bak
12:18:02+ rm etc/omero.properties
12:18:02+ touch etc/omero.properties
12:18:02++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
12:18:02+ ne=252
12:18:02++ sed -n 1,252p etc/omero.properties.bak
12:18:02+ line='##
12:18:02## omero.properties
12:18:02## ----------------
12:18:02##
12:18:02## DO NOT EDIT!
12:18:02##
12:18:02##
12:18:02## Any of these properties can be altered by using `omero config`. MODIFYING
12:18:02## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
12:18:02## at compile time!
12:18:02##
12:18:02## For an overview of these properties, see
12:18:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html12:18:02##
12:18:02## Properties marked with "DEVELOPMENT" should not be used in production.
12:18:0212:18:02# Comma separated list of Ice transports available to clients. The default
12:18:02# value ("ssl,tcp") instructs Ice to open the ports specified by the
12:18:02# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
12:18:02# will prevent all non-encrypted connections to the OMERO server.
12:18:02#
12:18:02# Additionally, there are two experimental values for using websockets:
12:18:02# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
12:18:02# that are opened are controlled by the omero.ports.ws and omero.ports.wss
12:18:02# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
12:18:02#
12:18:02# Note: When using websockets behind a web server like nginx, additional
12:18:02# configuration may be needed.
12:18:02omero.client.icetransports=ssl,tcp
12:18:0212:18:02# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
12:18:02# server
12:18:02omero.ports.prefix=
12:18:0212:18:02# The Glacier2 SSL port number to use
12:18:02omero.ports.ssl=4064
12:18:0212:18:02# The Glacier2 TCP port number to use (unencrypted)
12:18:02omero.ports.tcp=4063
12:18:0212:18:02# The Glacier2 WSS port number to use
12:18:02omero.ports.wss=4066
12:18:0212:18:02# The Glacier2 WS port number to use (unencrypted)
12:18:02omero.ports.ws=4065
12:18:0212:18:02# The IceGrid registry port number to use
12:18:02omero.ports.registry=4061
12:18:0212:18:02#############################################
12:18:02## JVM configuration
12:18:02##
12:18:02## Note: changes to the omero.jvmcfg properties
12:18:02## will *not* be reflected in OMERO.server
12:18:02## since they are defined in OMERO.py.
12:18:02#############################################
12:18:02## (For documentation only)
12:18:02# Memory strategy which will be used by default.
12:18:02# Options include: percent, manual
12:18:02omero.jvmcfg.strategy=percent
12:18:0212:18:02## (For documentation only)
12:18:02# Explicit value for the `-Xmx` argument, e.g.
12:18:02# "1g"
12:18:02omero.jvmcfg.heap_size=
12:18:0212:18:02## (For documentation only)
12:18:02# Explicit value for the MaxPermSize argument
12:18:02# to the JVM, e.g. "500M". Ignored for Java8+
12:18:02omero.jvmcfg.perm_gen=
12:18:0212:18:02## (For documentation only)
12:18:02# Toggles on or off heap dumps on OOMs. Default is "off".
12:18:02# The special value "tmp" will create the heap dumps in
12:18:02# your temp directory.
12:18:02omero.jvmcfg.heap_dump=
12:18:0212:18:02## (For documentation only)
12:18:02# Used only by the percent strategy. An integer between 0
12:18:02# and 100 which is the percent of active memory that will
12:18:02# be used by the service.
12:18:02omero.jvmcfg.percent=
12:18:0212:18:02## (For documentation only)
12:18:02# Contains other parameters which should be passed to the
12:18:02# JVM. The value of "append" is treated as if it were on
12:18:02# the command line so will be separated on whitespace.
12:18:02# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
12:18:02# results in two new arguments.
12:18:02# Note that when using `config set` from the command line
12:18:02# one may need to give a prior `--` option to prevent a value
12:18:02# starting with `-` from already being parsed as an option,
12:18:02# and values may need quoting to prevent whitespace or other
12:18:02# significant characters from being interpreted prematurely.
12:18:0212:18:02omero.jvmcfg.append=
12:18:0212:18:02## (For documentation only)
12:18:02# Manual override of the total system memory that
12:18:02# OMERO will *think* is present on the local OS (MB).
12:18:02# If unset, an attempt will be made to detect the actual
12:18:02# amount: first by using the Python library `psutil` and
12:18:02# if that is not installed, by running a Java tool. If
12:18:02# neither works, 4.0GB is assumed.
12:18:02omero.jvmcfg.system_memory=
12:18:0212:18:02## (For documentation only)
12:18:02# Suggestion for strategies as to the minimum memory
12:18:02# that they will use for calculating JVM settings (MB).
12:18:02omero.jvmcfg.min_system_memory=3414
12:18:0212:18:02## (For documentation only)
12:18:02# Suggestion for strategies as to the maximum memory
12:18:02# that they will use for calculating JVM settings (MB).
12:18:02omero.jvmcfg.max_system_memory=48000
12:18:0212:18:0212:18:02#############################################
12:18:02## Logging properties
12:18:02##
12:18:02## Note: changes to the default omero.logging values in
12:18:02## this file will *not* be reflected in OMERO.server
12:18:02## since they are defined in OMERO.py
12:18:02#############################################
12:18:0212:18:02## (For documentation only)
12:18:02# Relative server directory where the log files should be stored.
12:18:02omero.logging.directory=var/log/
12:18:0212:18:02## (For documentation only)
12:18:02# Whether the server log files should be rotated at a certain time
12:18:02# interval. If true, log files will be rolled over at midnight.
12:18:02# Otherwise, log files will be rolled over at a predetermined size,
12:18:02# see omero.logging.logsize for more information.
12:18:02omero.logging.timedlog=false
12:18:0212:18:02## (For documentation only)
12:18:02# If omero.logging.timedlog is false or unset, specifies the
12:18:02# maximum size of the server log files in bytes above which a
12:18:02# new log file should be created.
12:18:02omero.logging.logsize=5000000
12:18:0212:18:02## (For documentation only)
12:18:02# If omero.logging.timedlog is false or unset, specifies the
12:18:02# number of old server log files that should be kept. Old log
12:18:02# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
12:18:02omero.logging.lognum=9
12:18:0212:18:02## (For documentation only)
12:18:02# Specifies the threshold for the Python servers log files. Logging messages
12:18:02# which are less severe than this value will be ignored. For a list of
12:18:02# available values, see https://docs.python.org/3/library/logging.html#levels.
12:18:02omero.logging.level=20
12:18:0212:18:02#############################################
12:18:02## Ice overrides
12:18:02##
12:18:02## Though not used directly by OMERO, a number
12:18:02## of properties prefixed with "Ice.*" will
12:18:02## alter the behavior of the OMERO runtime
12:18:02## by configuring the Ice communicators. For a
12:18:02## full listing see:
12:18:02##
12:18:02## http://doc.zeroc.com/display/Ice/Property+Reference12:18:02## For more information see
12:18:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start12:18:02#############################################
12:18:0212:18:02# Disable IPv6 by setting to 0. Only needed in
12:18:02# certain situations.
12:18:02Ice.IPv6=1
12:18:0212:18:02# Glacier2Template IceSSL defaults and overrides,
12:18:02# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
12:18:02# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
12:18:02# update the corresponding IceSSL. property.
12:18:02omero.glacier2.IceSSL=
12:18:0212:18:02# Glacier2Template SSL maximum allowed protocol (mac bug)
12:18:02omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
12:18:02# Glacier2Template SSL allowed cipher suites
12:18:02omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
12:18:02# Glacier2Template SSL verification requirements
12:18:02omero.glacier2.IceSSL.VerifyPeer=0
12:18:02# Glacier2Template SSL allowed protocols
12:18:02omero.glacier2.IceSSL.Protocols=tls1
12:18:0212:18:02# Override the default set of OMERO services.
12:18:02# For example, to run OMERO.server with Blitz and Tables only
12:18:02# (i.e. disable Processor, DropBox, Indexer, PixelData)
12:18:02# set this to ``master:Blitz-0,Tables-0``.
12:18:02# Also use this to distribute OMERO services across multiple nodes,
12:18:02# for example:
12:18:02# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
12:18:02# See
12:18:02# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples12:18:02omero.server.nodedescriptors=
12:18:0212:18:02#############################################
12:18:02## Darwin (OS X) specific defaults for templated configuration files only.
12:18:02## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
12:18:02## file.
12:18:02## Do not set these properties in ``omero config``, instead set the original
12:18:02## ``xxx.yyy`` property
12:18:02#############################################
12:18:02_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
12:18:0212:18:02## (For documentation only)
12:18:02# Name of the Python module to use when starting the Tables service
12:18:02omero.tables.module=runTables
12:18:0212:18:02#############################################
12:18:02## Server product name for release artifacts
12:18:02#############################################
12:18:02product.name=OMERO.server
12:18:0212:18:02#############################################
12:18:02### Properties below this marker are ignored by
12:18:02### omero.install.config_parser.PropertyParser
12:18:02### END
12:18:0212:18:02#############################################
12:18:02## Library versions
12:18:02#############################################
12:18:02##
12:18:02versions.findbugs=1.2.1
12:18:02versions.ice36=3.6.5
12:18:02versions.ice36_lib=36
12:18:02## internal
12:18:02versions.omeroshares36=3.6.3
12:18:02versions.omeromock36=3.6.3
12:18:02versions.icedb36=3.6.3
12:18:02versions.ipython=1.2.1
12:18:0212:18:02versions.janino=2.5.10
12:18:0212:18:02versions.reportng=1.1.1
12:18:0212:18:02versions.testng=7.5
12:18:02versions.velocity=1.4
12:18:0212:18:02versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE12:18:02versions.omero-scripts-url=${versions.omero-pypi}
12:18:0212:18:02# hard coded, should not be picked up by scc for now!
12:18:02versions.omero-zarr-pixel-buffer=0.6.1
12:18:0212:18:02###
12:18:02### Appended Values
12:18:02###
12:18:0212:18:02## Internal dependencies'
12:18:02+ echo '##
12:18:02## omero.properties
12:18:02## ----------------
12:18:02##
12:18:02## DO NOT EDIT!
12:18:02##
12:18:02##
12:18:02## Any of these properties can be altered by using `omero config`. MODIFYING
12:18:02## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
12:18:02## at compile time!
12:18:02##
12:18:02## For an overview of these properties, see
12:18:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html12:18:02##
12:18:02## Properties marked with "DEVELOPMENT" should not be used in production.
12:18:0212:18:02# Comma separated list of Ice transports available to clients. The default
12:18:02# value ("ssl,tcp") instructs Ice to open the ports specified by the
12:18:02# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
12:18:02# will prevent all non-encrypted connections to the OMERO server.
12:18:02#
12:18:02# Additionally, there are two experimental values for using websockets:
12:18:02# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
12:18:02# that are opened are controlled by the omero.ports.ws and omero.ports.wss
12:18:02# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
12:18:02#
12:18:02# Note: When using websockets behind a web server like nginx, additional
12:18:02# configuration may be needed.
12:18:02omero.client.icetransports=ssl,tcp
12:18:0212:18:02# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
12:18:02# server
12:18:02omero.ports.prefix=
12:18:0212:18:02# The Glacier2 SSL port number to use
12:18:02omero.ports.ssl=4064
12:18:0212:18:02# The Glacier2 TCP port number to use (unencrypted)
12:18:02omero.ports.tcp=4063
12:18:0212:18:02# The Glacier2 WSS port number to use
12:18:02omero.ports.wss=4066
12:18:0212:18:02# The Glacier2 WS port number to use (unencrypted)
12:18:02omero.ports.ws=4065
12:18:0212:18:02# The IceGrid registry port number to use
12:18:02omero.ports.registry=4061
12:18:0212:18:02#############################################
12:18:02## JVM configuration
12:18:02##
12:18:02## Note: changes to the omero.jvmcfg properties
12:18:02## will *not* be reflected in OMERO.server
12:18:02## since they are defined in OMERO.py.
12:18:02#############################################
12:18:02## (For documentation only)
12:18:02# Memory strategy which will be used by default.
12:18:02# Options include: percent, manual
12:18:02omero.jvmcfg.strategy=percent
12:18:0212:18:02## (For documentation only)
12:18:02# Explicit value for the `-Xmx` argument, e.g.
12:18:02# "1g"
12:18:02omero.jvmcfg.heap_size=
12:18:0212:18:02## (For documentation only)
12:18:02# Explicit value for the MaxPermSize argument
12:18:02# to the JVM, e.g. "500M". Ignored for Java8+
12:18:02omero.jvmcfg.perm_gen=
12:18:0212:18:02## (For documentation only)
12:18:02# Toggles on or off heap dumps on OOMs. Default is "off".
12:18:02# The special value "tmp" will create the heap dumps in
12:18:02# your temp directory.
12:18:02omero.jvmcfg.heap_dump=
12:18:0212:18:02## (For documentation only)
12:18:02# Used only by the percent strategy. An integer between 0
12:18:02# and 100 which is the percent of active memory that will
12:18:02# be used by the service.
12:18:02omero.jvmcfg.percent=
12:18:0212:18:02## (For documentation only)
12:18:02# Contains other parameters which should be passed to the
12:18:02# JVM. The value of "append" is treated as if it were on
12:18:02# the command line so will be separated on whitespace.
12:18:02# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
12:18:02# results in two new arguments.
12:18:02# Note that when using `config set` from the command line
12:18:02# one may need to give a prior `--` option to prevent a value
12:18:02# starting with `-` from already being parsed as an option,
12:18:02# and values may need quoting to prevent whitespace or other
12:18:02# significant characters from being interpreted prematurely.
12:18:0212:18:02omero.jvmcfg.append=
12:18:0212:18:02## (For documentation only)
12:18:02# Manual override of the total system memory that
12:18:02# OMERO will *think* is present on the local OS (MB).
12:18:02# If unset, an attempt will be made to detect the actual
12:18:02# amount: first by using the Python library `psutil` and
12:18:02# if that is not installed, by running a Java tool. If
12:18:02# neither works, 4.0GB is assumed.
12:18:02omero.jvmcfg.system_memory=
12:18:0212:18:02## (For documentation only)
12:18:02# Suggestion for strategies as to the minimum memory
12:18:02# that they will use for calculating JVM settings (MB).
12:18:02omero.jvmcfg.min_system_memory=3414
12:18:0212:18:02## (For documentation only)
12:18:02# Suggestion for strategies as to the maximum memory
12:18:02# that they will use for calculating JVM settings (MB).
12:18:02omero.jvmcfg.max_system_memory=48000
12:18:0212:18:0212:18:02#############################################
12:18:02## Logging properties
12:18:02##
12:18:02## Note: changes to the default omero.logging values in
12:18:02## this file will *not* be reflected in OMERO.server
12:18:02## since they are defined in OMERO.py
12:18:02#############################################
12:18:0212:18:02## (For documentation only)
12:18:02# Relative server directory where the log files should be stored.
12:18:02omero.logging.directory=var/log/
12:18:0212:18:02## (For documentation only)
12:18:02# Whether the server log files should be rotated at a certain time
12:18:02# interval. If true, log files will be rolled over at midnight.
12:18:02# Otherwise, log files will be rolled over at a predetermined size,
12:18:02# see omero.logging.logsize for more information.
12:18:02omero.logging.timedlog=false
12:18:0212:18:02## (For documentation only)
12:18:02# If omero.logging.timedlog is false or unset, specifies the
12:18:02# maximum size of the server log files in bytes above which a
12:18:02# new log file should be created.
12:18:02omero.logging.logsize=5000000
12:18:0212:18:02## (For documentation only)
12:18:02# If omero.logging.timedlog is false or unset, specifies the
12:18:02# number of old server log files that should be kept. Old log
12:18:02# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
12:18:02omero.logging.lognum=9
12:18:0212:18:02## (For documentation only)
12:18:02# Specifies the threshold for the Python servers log files. Logging messages
12:18:02# which are less severe than this value will be ignored. For a list of
12:18:02# available values, see https://docs.python.org/3/library/logging.html#levels.
12:18:02omero.logging.level=20
12:18:0212:18:02#############################################
12:18:02## Ice overrides
12:18:02##
12:18:02## Though not used directly by OMERO, a number
12:18:02## of properties prefixed with "Ice.*" will
12:18:02## alter the behavior of the OMERO runtime
12:18:02## by configuring the Ice communicators. For a
12:18:02## full listing see:
12:18:02##
12:18:02## http://doc.zeroc.com/display/Ice/Property+Reference12:18:02## For more information see
12:18:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start12:18:02#############################################
12:18:0212:18:02# Disable IPv6 by setting to 0. Only needed in
12:18:02# certain situations.
12:18:02Ice.IPv6=1
12:18:0212:18:02# Glacier2Template IceSSL defaults and overrides,
12:18:02# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
12:18:02# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
12:18:02# update the corresponding IceSSL. property.
12:18:02omero.glacier2.IceSSL=
12:18:0212:18:02# Glacier2Template SSL maximum allowed protocol (mac bug)
12:18:02omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
12:18:02# Glacier2Template SSL allowed cipher suites
12:18:02omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
12:18:02# Glacier2Template SSL verification requirements
12:18:02omero.glacier2.IceSSL.VerifyPeer=0
12:18:02# Glacier2Template SSL allowed protocols
12:18:02omero.glacier2.IceSSL.Protocols=tls1
12:18:0212:18:02# Override the default set of OMERO services.
12:18:02# For example, to run OMERO.server with Blitz and Tables only
12:18:02# (i.e. disable Processor, DropBox, Indexer, PixelData)
12:18:02# set this to ``master:Blitz-0,Tables-0``.
12:18:02# Also use this to distribute OMERO services across multiple nodes,
12:18:02# for example:
12:18:02# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
12:18:02# See
12:18:02# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples12:18:02omero.server.nodedescriptors=
12:18:0212:18:02#############################################
12:18:02## Darwin (OS X) specific defaults for templated configuration files only.
12:18:02## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
12:18:02## file.
12:18:02## Do not set these properties in ``omero config``, instead set the original
12:18:02## ``xxx.yyy`` property
12:18:02#############################################
12:18:02_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
12:18:0212:18:02## (For documentation only)
12:18:02# Name of the Python module to use when starting the Tables service
12:18:02omero.tables.module=runTables
12:18:0212:18:02#############################################
12:18:02## Server product name for release artifacts
12:18:02#############################################
12:18:02product.name=OMERO.server
12:18:0212:18:02#############################################
12:18:02### Properties below this marker are ignored by
12:18:02### omero.install.config_parser.PropertyParser
12:18:02### END
12:18:0212:18:02#############################################
12:18:02## Library versions
12:18:02#############################################
12:18:02##
12:18:02versions.findbugs=1.2.1
12:18:02versions.ice36=3.6.5
12:18:02versions.ice36_lib=36
12:18:02## internal
12:18:02versions.omeroshares36=3.6.3
12:18:02versions.omeromock36=3.6.3
12:18:02versions.icedb36=3.6.3
12:18:02versions.ipython=1.2.1
12:18:0212:18:02versions.janino=2.5.10
12:18:0212:18:02versions.reportng=1.1.1
12:18:0212:18:02versions.testng=7.5
12:18:02versions.velocity=1.4
12:18:0212:18:02versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE12:18:02versions.omero-scripts-url=${versions.omero-pypi}
12:18:0212:18:02# hard coded, should not be picked up by scc for now!
12:18:02versions.omero-zarr-pixel-buffer=0.6.1
12:18:0212:18:02###
12:18:02### Appended Values
12:18:02###
12:18:0212:18:02## Internal dependencies'
12:18:02+ echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/12:18:02+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive12:18:02+ echo versions.scripts-prefix=
12:18:02+ echo versions.scripts=merge_ci
12:18:02+ cat /home/omero/workspace/OMERO-push/version.properties
12:18:02+ git commit -a -m 'Add version.properties to etc/omero.properties'
12:18:02[detached HEAD cc67600ce0] Add version.properties to etc/omero.properties
12:18:02 1 file changed, 46 insertions(+), 6 deletions(-)
12:18:02+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
12:18:05To github.com:snoopycrimecop/openmicroscopy.git
12:18:05 + 8e883bef6f...cc67600ce0 HEAD -> merge_ci (forced update)
12:18:05Finished: SUCCESS
