20:53:29Started by upstream project "Trigger" build number 320:53:29originally caused by:
20:53:29 Started by user devspace20:53:29Running as SYSTEM
20:53:29Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
20:53:29The recommended git tool is: NONE
20:53:29No credentials specified
20:53:29Cloning the remote Git repository
20:53:29Cloning repository https://github.com/ome/openmicroscopy.git20:53:29 > git init /home/omero/workspace/OMERO-push/src # timeout=10
20:53:29Fetching upstream changes from https://github.com/ome/openmicroscopy.git20:53:29 > git --version # timeout=10
20:53:29 > git --version # 'git version 2.47.3'
20:53:29 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
20:55:25 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
20:55:25 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
20:55:25Avoid second fetch
20:55:25 > git rev-parse origin/develop^{commit} # timeout=10
20:55:25Checking out Revision 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 (origin/develop)
20:55:25 > git config core.sparsecheckout # timeout=10
20:55:25 > git checkout -f 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=30
20:55:25Commit message: "Merge pull request #6441 from sbesson/tmpdir_var_tmp"
20:55:25First time build. Skipping changelog.
20:55:25Cleaning workspace
20:55:25 > git rev-parse --verify HEAD # timeout=10
20:55:25Resetting working tree
20:55:25 > git reset --hard # timeout=10
20:55:25 > git clean -fdx # timeout=10
20:55:25Copied 1 artifact from "OMERO-python-superbuild-build" build number 120:55:25[OMERO-push] $ /bin/bash -xe /tmp/jenkins9744686667865019244.sh
20:55:25+ python3.11 -mvenv venv
20:55:29+ source /home/omero/workspace/OMERO-push/venv/bin/activate
20:55:29++ deactivate nondestructive
20:55:29++ '[' -n '' ']'
20:55:29++ '[' -n '' ']'
20:55:29++ hash -r
20:55:29++ '[' -n '' ']'
20:55:29++ unset VIRTUAL_ENV
20:55:29++ unset VIRTUAL_ENV_PROMPT
20:55:29++ '[' '!' nondestructive = nondestructive ']'
20:55:29++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
20:55:29++ export VIRTUAL_ENV
20:55:29++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:55:29++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:55:29++ export PATH
20:55:29++ '[' -n '' ']'
20:55:29++ '[' -z '' ']'
20:55:29++ _OLD_VIRTUAL_PS1=
20:55:29++ PS1='(venv) '
20:55:29++ export PS1
20:55:29++ VIRTUAL_ENV_PROMPT='(venv) '
20:55:29++ export VIRTUAL_ENV_PROMPT
20:55:29++ hash -r
20:55:29+ pip install -U pip
20:55:29Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1)
20:55:29Collecting pip
20:55:29 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
20:55:29Installing collected packages: pip
20:55:29 Attempting uninstall: pip
20:55:29 Found existing installation: pip 22.3.1
20:55:29 Uninstalling pip-22.3.1:
20:55:29 Successfully uninstalled pip-22.3.1
20:55:30Successfully installed pip-25.3
20:55:30+ pip install -U scc
20:55:31Collecting scc
20:55:31 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
20:55:31Collecting PyGithub>=1.54 (from scc)
20:55:31 Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB)
20:55:31Collecting PyYAML>=5.1 (from scc)
20:55:31 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
20:55:31Collecting future (from scc)
20:55:31 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
20:55:31Collecting ruamel.yaml (from scc)
20:55:31 Using cached ruamel_yaml-0.18.17-py3-none-any.whl.metadata (27 kB)
20:55:31Collecting ruamel.yaml.jinja2 (from scc)
20:55:31 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
20:55:31Collecting six (from scc)
20:55:31 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
20:55:31Collecting urllib3<2 (from scc)
20:55:31 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
20:55:31Collecting yaclifw<0.3,>=0.2.0 (from scc)
20:55:31 Using cached yaclifw-0.2.0-py3-none-any.whl
20:55:31Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
20:55:31 Using cached pynacl-1.6.1-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.8 kB)
20:55:31Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
20:55:31 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
20:55:31Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
20:55:31 Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
20:55:31Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
20:55:31 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
20:55:31Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
20:55:31 Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB)
20:55:32Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
20:55:32 Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB)
20:55:32Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
20:55:32 Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes)
20:55:32Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
20:55:32 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
20:55:32Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
20:55:32 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
20:55:32Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
20:55:32 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
20:55:32Collecting ruamel.yaml.clib>=0.2.15 (from ruamel.yaml->scc)
20:55:32 Using cached ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.5 kB)
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20:55:32Using cached pynacl-1.6.1-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
20:55:32Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
20:55:32Using cached requests-2.32.5-py3-none-any.whl (64 kB)
20:55:32Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
20:55:32Using cached idna-3.11-py3-none-any.whl (71 kB)
20:55:32Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
20:55:32Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
20:55:32Using cached future-1.0.0-py3-none-any.whl (491 kB)
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20:55:32Using cached ruamel_yaml-0.18.17-py3-none-any.whl (121 kB)
20:55:32Using cached ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (777 kB)
20:55:32Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
20:55:32Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
20:55:32Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
20:55:3420:55:34Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.11.12 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.1 requests-2.32.5 ruamel.yaml-0.18.17 ruamel.yaml.clib-0.2.15 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0
20:55:34+ test -e src
20:55:34+ cd src
20:55:34++ git config github.user
20:55:34+ user=snoopycrimecop
20:55:34+ scc merge develop --no-ask --reset --shallow -S success-only
20:55:382025-12-17 20:55:38,217 [ scc.merge] INFO Merging Pull Request(s) based on develop
20:55:382025-12-17 20:55:38,217 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
20:55:382025-12-17 20:55:38,217 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
20:55:382025-12-17 20:55:38,217 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
20:55:382025-12-17 20:55:38,218 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
20:55:382025-12-17 20:55:38,218 [ scc.merge] INFO Excluding Pull Request(s) without successful status
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO Repository: ome/openmicroscopy
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO Excluded PRs:
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6442 snoopycrimecop 'update dependencies' (status: failure)
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO Already up to date.
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO Merged PRs:
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
20:55:472025-12-17 20:55:47,642 [ scc.merge] INFO
20:55:47+ cp etc/omero.properties etc/omero.properties.bak
20:55:47+ rm etc/omero.properties
20:55:47+ touch etc/omero.properties
20:55:47++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
20:55:47+ ne=249
20:55:47++ sed -n 1,249p etc/omero.properties.bak
20:55:47+ line='##
20:55:47## omero.properties
20:55:47## ----------------
20:55:47##
20:55:47## DO NOT EDIT!
20:55:47##
20:55:47##
20:55:47## Any of these properties can be altered by using `omero config`. MODIFYING
20:55:47## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
20:55:47## at compile time!
20:55:47##
20:55:47## For an overview of these properties, see
20:55:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html20:55:47##
20:55:47## Properties marked with "DEVELOPMENT" should not be used in production.
20:55:4720:55:47# Comma separated list of Ice transports available to clients. The default
20:55:47# value ("ssl,tcp") instructs Ice to open the ports specified by the
20:55:47# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
20:55:47# will prevent all non-encrypted connections to the OMERO server.
20:55:47#
20:55:47# Additionally, there are two experimental values for using websockets:
20:55:47# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
20:55:47# that are opened are controlled by the omero.ports.ws and omero.ports.wss
20:55:47# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
20:55:47#
20:55:47# Note: When using websockets behind a web server like nginx, additional
20:55:47# configuration may be needed.
20:55:47omero.client.icetransports=ssl,tcp
20:55:4720:55:47# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
20:55:47# server
20:55:47omero.ports.prefix=
20:55:4720:55:47# The Glacier2 SSL port number to use
20:55:47omero.ports.ssl=4064
20:55:4720:55:47# The Glacier2 TCP port number to use (unencrypted)
20:55:47omero.ports.tcp=4063
20:55:4720:55:47# The Glacier2 WSS port number to use
20:55:47omero.ports.wss=4066
20:55:4720:55:47# The Glacier2 WS port number to use (unencrypted)
20:55:47omero.ports.ws=4065
20:55:4720:55:47# The IceGrid registry port number to use
20:55:47omero.ports.registry=4061
20:55:4720:55:47#############################################
20:55:47## JVM configuration
20:55:47##
20:55:47## Note: changes to the omero.jvmcfg properties
20:55:47## will *not* be reflected in OMERO.server
20:55:47## since they are defined in OMERO.py.
20:55:47#############################################
20:55:47## (For documentation only)
20:55:47# Memory strategy which will be used by default.
20:55:47# Options include: percent, manual
20:55:47omero.jvmcfg.strategy=percent
20:55:4720:55:47## (For documentation only)
20:55:47# Explicit value for the `-Xmx` argument, e.g.
20:55:47# "1g"
20:55:47omero.jvmcfg.heap_size=
20:55:4720:55:47## (For documentation only)
20:55:47# Explicit value for the MaxPermSize argument
20:55:47# to the JVM, e.g. "500M". Ignored for Java8+
20:55:47omero.jvmcfg.perm_gen=
20:55:4720:55:47## (For documentation only)
20:55:47# Toggles on or off heap dumps on OOMs. Default is "off".
20:55:47# The special value "tmp" will create the heap dumps in
20:55:47# your temp directory.
20:55:47omero.jvmcfg.heap_dump=
20:55:4720:55:47## (For documentation only)
20:55:47# Used only by the percent strategy. An integer between 0
20:55:47# and 100 which is the percent of active memory that will
20:55:47# be used by the service.
20:55:47omero.jvmcfg.percent=
20:55:4720:55:47## (For documentation only)
20:55:47# Contains other parameters which should be passed to the
20:55:47# JVM. The value of "append" is treated as if it were on
20:55:47# the command line so will be separated on whitespace.
20:55:47# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
20:55:47# results in two new arguments.
20:55:47# Note that when using `config set` from the command line
20:55:47# one may need to give a prior `--` option to prevent a value
20:55:47# starting with `-` from already being parsed as an option,
20:55:47# and values may need quoting to prevent whitespace or other
20:55:47# significant characters from being interpreted prematurely.
20:55:4720:55:47omero.jvmcfg.append=
20:55:4720:55:47## (For documentation only)
20:55:47# Manual override of the total system memory that
20:55:47# OMERO will *think* is present on the local OS (MB).
20:55:47# If unset, an attempt will be made to detect the actual
20:55:47# amount: first by using the Python library `psutil` and
20:55:47# if that is not installed, by running a Java tool. If
20:55:47# neither works, 4.0GB is assumed.
20:55:47omero.jvmcfg.system_memory=
20:55:4720:55:47## (For documentation only)
20:55:47# Suggestion for strategies as to the minimum memory
20:55:47# that they will use for calculating JVM settings (MB).
20:55:47omero.jvmcfg.min_system_memory=3414
20:55:4720:55:47## (For documentation only)
20:55:47# Suggestion for strategies as to the maximum memory
20:55:47# that they will use for calculating JVM settings (MB).
20:55:47omero.jvmcfg.max_system_memory=48000
20:55:4720:55:4720:55:47#############################################
20:55:47## Logging properties
20:55:47##
20:55:47## Note: changes to the default omero.logging values in
20:55:47## this file will *not* be reflected in OMERO.server
20:55:47## since they are defined in OMERO.py
20:55:47#############################################
20:55:4720:55:47## (For documentation only)
20:55:47# Relative server directory where the log files should be stored.
20:55:47omero.logging.directory=var/log/
20:55:4720:55:47## (For documentation only)
20:55:47# Whether the server log files should be rotated at a certain time
20:55:47# interval. If true, log files will be rolled over at midnight.
20:55:47# Otherwise, log files will be rolled over at a predetermined size,
20:55:47# see omero.logging.logsize for more information.
20:55:47omero.logging.timedlog=false
20:55:4720:55:47## (For documentation only)
20:55:47# If omero.logging.timedlog is false or unset, specifies the
20:55:47# maximum size of the server log files in bytes above which a
20:55:47# new log file should be created.
20:55:47omero.logging.logsize=5000000
20:55:4720:55:47## (For documentation only)
20:55:47# If omero.logging.timedlog is false or unset, specifies the
20:55:47# number of old server log files that should be kept. Old log
20:55:47# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
20:55:47omero.logging.lognum=9
20:55:4720:55:47## (For documentation only)
20:55:47# Specifies the threshold for the Python servers log files. Logging messages
20:55:47# which are less severe than this value will be ignored. For a list of
20:55:47# available values, see https://docs.python.org/3/library/logging.html#levels.
20:55:47omero.logging.level=20
20:55:4720:55:47#############################################
20:55:47## Ice overrides
20:55:47##
20:55:47## Though not used directly by OMERO, a number
20:55:47## of properties prefixed with "Ice.*" will
20:55:47## alter the behavior of the OMERO runtime
20:55:47## by configuring the Ice communicators. For a
20:55:47## full listing see:
20:55:47##
20:55:47## http://doc.zeroc.com/display/Ice/Property+Reference20:55:47## For more information see
20:55:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start20:55:47#############################################
20:55:4720:55:47# Disable IPv6 by setting to 0. Only needed in
20:55:47# certain situations.
20:55:47Ice.IPv6=1
20:55:4720:55:47# Glacier2Template IceSSL defaults and overrides,
20:55:47# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
20:55:47# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
20:55:47# update the corresponding IceSSL. property.
20:55:47omero.glacier2.IceSSL=
20:55:4720:55:47# Glacier2Template SSL maximum allowed protocol (mac bug)
20:55:47omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
20:55:47# Glacier2Template SSL allowed cipher suites
20:55:47omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
20:55:47# Glacier2Template SSL verification requirements
20:55:47omero.glacier2.IceSSL.VerifyPeer=0
20:55:47# Glacier2Template SSL allowed protocols
20:55:47omero.glacier2.IceSSL.Protocols=tls1
20:55:4720:55:47# Override the default set of OMERO services.
20:55:47# For example, to run OMERO.server with Blitz and Tables only
20:55:47# (i.e. disable Processor, DropBox, Indexer, PixelData)
20:55:47# set this to ``master:Blitz-0,Tables-0``.
20:55:47# Also use this to distribute OMERO services across multiple nodes,
20:55:47# for example:
20:55:47# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
20:55:47# See
20:55:47# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples20:55:47omero.server.nodedescriptors=
20:55:4720:55:47#############################################
20:55:47## Darwin (OS X) specific defaults for templated configuration files only.
20:55:47## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
20:55:47## file.
20:55:47## Do not set these properties in ``omero config``, instead set the original
20:55:47## ``xxx.yyy`` property
20:55:47#############################################
20:55:47_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
20:55:4720:55:47## (For documentation only)
20:55:47# Name of the Python module to use when starting the Tables service
20:55:47omero.tables.module=runTables
20:55:4720:55:47#############################################
20:55:47## Server product name for release artifacts
20:55:47#############################################
20:55:47product.name=OMERO.server
20:55:4720:55:47#############################################
20:55:47### Properties below this marker are ignored by
20:55:47### omero.install.config_parser.PropertyParser
20:55:47### END
20:55:4720:55:47#############################################
20:55:47## Library versions
20:55:47#############################################
20:55:47##
20:55:47versions.findbugs=1.2.1
20:55:47versions.ice36=3.6.5
20:55:47versions.ice36_lib=36
20:55:47## internal
20:55:47versions.omeroshares36=3.6.3
20:55:47versions.omeromock36=3.6.3
20:55:47versions.icedb36=3.6.3
20:55:47versions.ipython=1.2.1
20:55:4720:55:47versions.janino=2.5.10
20:55:4720:55:47versions.reportng=1.1.1
20:55:4720:55:47versions.testng=7.5
20:55:47versions.velocity=1.4
20:55:4720:55:47versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE20:55:47versions.omero-scripts-url=${versions.omero-pypi}
20:55:4720:55:47###
20:55:47### Appended Values
20:55:47###
20:55:4720:55:47## Internal dependencies'
20:55:47+ echo '##
20:55:47## omero.properties
20:55:47## ----------------
20:55:47##
20:55:47## DO NOT EDIT!
20:55:47##
20:55:47##
20:55:47## Any of these properties can be altered by using `omero config`. MODIFYING
20:55:47## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
20:55:47## at compile time!
20:55:47##
20:55:47## For an overview of these properties, see
20:55:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html20:55:47##
20:55:47## Properties marked with "DEVELOPMENT" should not be used in production.
20:55:4720:55:47# Comma separated list of Ice transports available to clients. The default
20:55:47# value ("ssl,tcp") instructs Ice to open the ports specified by the
20:55:47# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
20:55:47# will prevent all non-encrypted connections to the OMERO server.
20:55:47#
20:55:47# Additionally, there are two experimental values for using websockets:
20:55:47# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
20:55:47# that are opened are controlled by the omero.ports.ws and omero.ports.wss
20:55:47# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
20:55:47#
20:55:47# Note: When using websockets behind a web server like nginx, additional
20:55:47# configuration may be needed.
20:55:47omero.client.icetransports=ssl,tcp
20:55:4720:55:47# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
20:55:47# server
20:55:47omero.ports.prefix=
20:55:4720:55:47# The Glacier2 SSL port number to use
20:55:47omero.ports.ssl=4064
20:55:4720:55:47# The Glacier2 TCP port number to use (unencrypted)
20:55:47omero.ports.tcp=4063
20:55:4720:55:47# The Glacier2 WSS port number to use
20:55:47omero.ports.wss=4066
20:55:4720:55:47# The Glacier2 WS port number to use (unencrypted)
20:55:47omero.ports.ws=4065
20:55:4720:55:47# The IceGrid registry port number to use
20:55:47omero.ports.registry=4061
20:55:4720:55:47#############################################
20:55:47## JVM configuration
20:55:47##
20:55:47## Note: changes to the omero.jvmcfg properties
20:55:47## will *not* be reflected in OMERO.server
20:55:47## since they are defined in OMERO.py.
20:55:47#############################################
20:55:47## (For documentation only)
20:55:47# Memory strategy which will be used by default.
20:55:47# Options include: percent, manual
20:55:47omero.jvmcfg.strategy=percent
20:55:4720:55:47## (For documentation only)
20:55:47# Explicit value for the `-Xmx` argument, e.g.
20:55:47# "1g"
20:55:47omero.jvmcfg.heap_size=
20:55:4720:55:47## (For documentation only)
20:55:47# Explicit value for the MaxPermSize argument
20:55:47# to the JVM, e.g. "500M". Ignored for Java8+
20:55:47omero.jvmcfg.perm_gen=
20:55:4720:55:47## (For documentation only)
20:55:47# Toggles on or off heap dumps on OOMs. Default is "off".
20:55:47# The special value "tmp" will create the heap dumps in
20:55:47# your temp directory.
20:55:47omero.jvmcfg.heap_dump=
20:55:4720:55:47## (For documentation only)
20:55:47# Used only by the percent strategy. An integer between 0
20:55:47# and 100 which is the percent of active memory that will
20:55:47# be used by the service.
20:55:47omero.jvmcfg.percent=
20:55:4720:55:47## (For documentation only)
20:55:47# Contains other parameters which should be passed to the
20:55:47# JVM. The value of "append" is treated as if it were on
20:55:47# the command line so will be separated on whitespace.
20:55:47# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
20:55:47# results in two new arguments.
20:55:47# Note that when using `config set` from the command line
20:55:47# one may need to give a prior `--` option to prevent a value
20:55:47# starting with `-` from already being parsed as an option,
20:55:47# and values may need quoting to prevent whitespace or other
20:55:47# significant characters from being interpreted prematurely.
20:55:4720:55:47omero.jvmcfg.append=
20:55:4720:55:47## (For documentation only)
20:55:47# Manual override of the total system memory that
20:55:47# OMERO will *think* is present on the local OS (MB).
20:55:47# If unset, an attempt will be made to detect the actual
20:55:47# amount: first by using the Python library `psutil` and
20:55:47# if that is not installed, by running a Java tool. If
20:55:47# neither works, 4.0GB is assumed.
20:55:47omero.jvmcfg.system_memory=
20:55:4720:55:47## (For documentation only)
20:55:47# Suggestion for strategies as to the minimum memory
20:55:47# that they will use for calculating JVM settings (MB).
20:55:47omero.jvmcfg.min_system_memory=3414
20:55:4720:55:47## (For documentation only)
20:55:47# Suggestion for strategies as to the maximum memory
20:55:47# that they will use for calculating JVM settings (MB).
20:55:47omero.jvmcfg.max_system_memory=48000
20:55:4720:55:4720:55:47#############################################
20:55:47## Logging properties
20:55:47##
20:55:47## Note: changes to the default omero.logging values in
20:55:47## this file will *not* be reflected in OMERO.server
20:55:47## since they are defined in OMERO.py
20:55:47#############################################
20:55:4720:55:47## (For documentation only)
20:55:47# Relative server directory where the log files should be stored.
20:55:47omero.logging.directory=var/log/
20:55:4720:55:47## (For documentation only)
20:55:47# Whether the server log files should be rotated at a certain time
20:55:47# interval. If true, log files will be rolled over at midnight.
20:55:47# Otherwise, log files will be rolled over at a predetermined size,
20:55:47# see omero.logging.logsize for more information.
20:55:47omero.logging.timedlog=false
20:55:4720:55:47## (For documentation only)
20:55:47# If omero.logging.timedlog is false or unset, specifies the
20:55:47# maximum size of the server log files in bytes above which a
20:55:47# new log file should be created.
20:55:47omero.logging.logsize=5000000
20:55:4720:55:47## (For documentation only)
20:55:47# If omero.logging.timedlog is false or unset, specifies the
20:55:47# number of old server log files that should be kept. Old log
20:55:47# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
20:55:47omero.logging.lognum=9
20:55:4720:55:47## (For documentation only)
20:55:47# Specifies the threshold for the Python servers log files. Logging messages
20:55:47# which are less severe than this value will be ignored. For a list of
20:55:47# available values, see https://docs.python.org/3/library/logging.html#levels.
20:55:47omero.logging.level=20
20:55:4720:55:47#############################################
20:55:47## Ice overrides
20:55:47##
20:55:47## Though not used directly by OMERO, a number
20:55:47## of properties prefixed with "Ice.*" will
20:55:47## alter the behavior of the OMERO runtime
20:55:47## by configuring the Ice communicators. For a
20:55:47## full listing see:
20:55:47##
20:55:47## http://doc.zeroc.com/display/Ice/Property+Reference20:55:47## For more information see
20:55:47## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start20:55:47#############################################
20:55:4720:55:47# Disable IPv6 by setting to 0. Only needed in
20:55:47# certain situations.
20:55:47Ice.IPv6=1
20:55:4720:55:47# Glacier2Template IceSSL defaults and overrides,
20:55:47# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
20:55:47# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
20:55:47# update the corresponding IceSSL. property.
20:55:47omero.glacier2.IceSSL=
20:55:4720:55:47# Glacier2Template SSL maximum allowed protocol (mac bug)
20:55:47omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
20:55:47# Glacier2Template SSL allowed cipher suites
20:55:47omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
20:55:47# Glacier2Template SSL verification requirements
20:55:47omero.glacier2.IceSSL.VerifyPeer=0
20:55:47# Glacier2Template SSL allowed protocols
20:55:47omero.glacier2.IceSSL.Protocols=tls1
20:55:4720:55:47# Override the default set of OMERO services.
20:55:47# For example, to run OMERO.server with Blitz and Tables only
20:55:47# (i.e. disable Processor, DropBox, Indexer, PixelData)
20:55:47# set this to ``master:Blitz-0,Tables-0``.
20:55:47# Also use this to distribute OMERO services across multiple nodes,
20:55:47# for example:
20:55:47# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
20:55:47# See
20:55:47# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples20:55:47omero.server.nodedescriptors=
20:55:4720:55:47#############################################
20:55:47## Darwin (OS X) specific defaults for templated configuration files only.
20:55:47## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
20:55:47## file.
20:55:47## Do not set these properties in ``omero config``, instead set the original
20:55:47## ``xxx.yyy`` property
20:55:47#############################################
20:55:47_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
20:55:4720:55:47## (For documentation only)
20:55:47# Name of the Python module to use when starting the Tables service
20:55:47omero.tables.module=runTables
20:55:4720:55:47#############################################
20:55:47## Server product name for release artifacts
20:55:47#############################################
20:55:47product.name=OMERO.server
20:55:4720:55:47#############################################
20:55:47### Properties below this marker are ignored by
20:55:47### omero.install.config_parser.PropertyParser
20:55:47### END
20:55:4720:55:47#############################################
20:55:47## Library versions
20:55:47#############################################
20:55:47##
20:55:47versions.findbugs=1.2.1
20:55:47versions.ice36=3.6.5
20:55:47versions.ice36_lib=36
20:55:47## internal
20:55:47versions.omeroshares36=3.6.3
20:55:47versions.omeromock36=3.6.3
20:55:47versions.icedb36=3.6.3
20:55:47versions.ipython=1.2.1
20:55:4720:55:47versions.janino=2.5.10
20:55:4720:55:47versions.reportng=1.1.1
20:55:4720:55:47versions.testng=7.5
20:55:47versions.velocity=1.4
20:55:4720:55:47versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE20:55:47versions.omero-scripts-url=${versions.omero-pypi}
20:55:4720:55:47###
20:55:47### Appended Values
20:55:47###
20:55:4720:55:47## Internal dependencies'
20:55:47+ echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/20:55:47+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive20:55:47+ echo versions.scripts-prefix=
20:55:47+ echo versions.scripts=merge_ci
20:55:47+ cat /home/omero/workspace/OMERO-push/version.properties
20:55:47+ git commit -a -m 'Add version.properties to etc/omero.properties'
20:55:47[detached HEAD 82ef22269e] Add version.properties to etc/omero.properties
20:55:47 1 file changed, 46 insertions(+), 7 deletions(-)
20:55:47+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
20:55:49To github.com:snoopycrimecop/openmicroscopy.git
20:55:49 + c91b7e1d6e...82ef22269e HEAD -> merge_ci (forced update)
20:55:49Finished: SUCCESS
