01:49:59Started by upstream project "Trigger" build number 12001:49:59originally caused by:
01:49:59 Started by timer
01:49:59Running as SYSTEM
01:49:59Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
01:49:59The recommended git tool is: NONE
01:49:59No credentials specified
01:49:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
01:49:59Fetching changes from the remote Git repository
01:49:59 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
01:49:59Fetching upstream changes from https://github.com/ome/openmicroscopy.git01:49:59 > git --version # timeout=10
01:49:59 > git --version # 'git version 2.39.3'
01:49:59 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:50:00 > git rev-parse origin/develop^{commit} # timeout=10
01:50:00Checking out Revision 88d0ec941afcac9a3f245341c2a9ed7cf3fe6cfc (origin/develop)
01:50:00 > git config core.sparsecheckout # timeout=10
01:50:00 > git checkout -f 88d0ec941afcac9a3f245341c2a9ed7cf3fe6cfc # timeout=30
01:50:00Commit message: "Merge pull request #6391 from will-moore/json_api_python_csrf_fix"
01:50:00 > git rev-list --no-walk 88d0ec941afcac9a3f245341c2a9ed7cf3fe6cfc # timeout=10
01:50:00Cleaning workspace
01:50:00 > git rev-parse --verify HEAD # timeout=10
01:50:00Resetting working tree
01:50:00 > git reset --hard # timeout=10
01:50:00 > git clean -fdx # timeout=10
01:50:00Copied 1 artifact from "OMERO-python-superbuild-build" build number 10601:50:00[OMERO-push] $ /bin/bash -xe /tmp/jenkins17506284058059392180.sh
01:50:00+ python3 -mvenv venv
01:50:02+ source /home/omero/workspace/OMERO-push/venv/bin/activate
01:50:02++ deactivate nondestructive
01:50:02++ '[' -n '' ']'
01:50:02++ '[' -n '' ']'
01:50:02++ '[' -n /bin/bash -o -n '' ']'
01:50:02++ hash -r
01:50:02++ '[' -n '' ']'
01:50:02++ unset VIRTUAL_ENV
01:50:02++ '[' '!' nondestructive = nondestructive ']'
01:50:02++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
01:50:02++ export VIRTUAL_ENV
01:50:02++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:50:02++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:50:02++ export PATH
01:50:02++ '[' -n '' ']'
01:50:02++ '[' -z '' ']'
01:50:02++ _OLD_VIRTUAL_PS1=
01:50:02++ PS1='(venv) '
01:50:02++ export PS1
01:50:02++ '[' -n /bin/bash -o -n '' ']'
01:50:02++ hash -r
01:50:02+ pip install -U pip
01:50:05Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.1.1)
01:50:05+ pip install -U scc
01:50:06Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1)
01:50:06Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
01:50:06Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
01:50:06Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
01:50:06Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
01:50:06Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
01:50:06Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
01:50:06Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
01:50:06Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
01:50:06Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
01:50:06Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
01:50:06Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
01:50:06Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
01:50:06Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
01:50:06Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
01:50:06Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
01:50:06Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
01:50:06Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
01:50:06Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
01:50:06Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
01:50:06Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
01:50:06Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
01:50:06+ test -e src
01:50:06+ cd src
01:50:06++ git config github.user
01:50:06+ user=snoopycrimecop
01:50:06+ scc merge develop --no-ask --reset --shallow -S success-only
01:50:122024-07-01 01:50:12,242 [ scc.merge] INFO Merging Pull Request(s) based on develop
01:50:122024-07-01 01:50:12,243 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
01:50:122024-07-01 01:50:12,243 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
01:50:122024-07-01 01:50:12,243 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
01:50:122024-07-01 01:50:12,243 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
01:50:122024-07-01 01:50:12,243 [ scc.merge] INFO Excluding Pull Request(s) without successful status
01:50:412024-07-01 01:50:41,509 [ scc.merge] INFO Repository: ome/openmicroscopy
01:50:412024-07-01 01:50:41,509 [ scc.merge] INFO Excluded PRs:
01:50:412024-07-01 01:50:41,509 [ scc.merge] INFO - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment)
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO Already up to date.
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO Merged PRs:
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6309 jburel 'add try block'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6376 snoopycrimecop 'update dependencies'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6388 sbesson 'Upgrade Ivy to 2.5.2'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO - PR 6393 sbesson 'Add documentation for the omero.logging properties'
01:50:412024-07-01 01:50:41,510 [ scc.merge] INFO
01:50:41+ cp etc/omero.properties etc/omero.properties.bak
01:50:41+ rm etc/omero.properties
01:50:41+ touch etc/omero.properties
01:50:41++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
01:50:41+ ne=247
01:50:41++ sed -n 1,247p etc/omero.properties.bak
01:50:41+ line='##
01:50:41## omero.properties
01:50:41## ----------------
01:50:41##
01:50:41## DO NOT EDIT!
01:50:41##
01:50:41##
01:50:41## Any of these properties can be altered by using `omero config`. MODIFYING
01:50:41## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:50:41## at compile time!
01:50:41##
01:50:41## For an overview of these properties, see
01:50:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:50:41##
01:50:41## Properties marked with "DEVELOPMENT" should not be used in production.
01:50:4101:50:41# Comma separated list of Ice transports available to clients. The default
01:50:41# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:50:41# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:50:41# will prevent all non-encrypted connections to the OMERO server.
01:50:41#
01:50:41# Additionally, there are two experimental values for using websockets:
01:50:41# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:50:41# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:50:41# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:50:41#
01:50:41# Note: When using websockets behind a web server like nginx, additional
01:50:41# configuration may be needed.
01:50:41omero.client.icetransports=ssl,tcp
01:50:4101:50:41# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:50:41# server
01:50:41omero.ports.prefix=
01:50:4101:50:41# The Glacier2 SSL port number to use
01:50:41omero.ports.ssl=4064
01:50:4101:50:41# The Glacier2 TCP port number to use (unencrypted)
01:50:41omero.ports.tcp=4063
01:50:4101:50:41# The Glacier2 WSS port number to use
01:50:41omero.ports.wss=4066
01:50:4101:50:41# The Glacier2 WS port number to use (unencrypted)
01:50:41omero.ports.ws=4065
01:50:4101:50:41# The IceGrid registry port number to use
01:50:41omero.ports.registry=4061
01:50:4101:50:41#############################################
01:50:41## JVM configuration
01:50:41##
01:50:41## Note: changes to the omero.jvmcfg properties
01:50:41## will *not* be reflected in OMERO.server
01:50:41## since they are defined in OMERO.py.
01:50:41#############################################
01:50:41## (For documentation only)
01:50:41# Memory strategy which will be used by default.
01:50:41# Options include: percent, manual
01:50:41omero.jvmcfg.strategy=percent
01:50:4101:50:41## (For documentation only)
01:50:41# Explicit value for the `-Xmx` argument, e.g.
01:50:41# "1g"
01:50:41omero.jvmcfg.heap_size=
01:50:4101:50:41## (For documentation only)
01:50:41# Explicit value for the MaxPermSize argument
01:50:41# to the JVM, e.g. "500M". Ignored for Java8+
01:50:41omero.jvmcfg.perm_gen=
01:50:4101:50:41## (For documentation only)
01:50:41# Toggles on or off heap dumps on OOMs. Default is "off".
01:50:41# The special value "tmp" will create the heap dumps in
01:50:41# your temp directory.
01:50:41omero.jvmcfg.heap_dump=
01:50:4101:50:41## (For documentation only)
01:50:41# Used only by the percent strategy. An integer between 0
01:50:41# and 100 which is the percent of active memory that will
01:50:41# be used by the service.
01:50:41omero.jvmcfg.percent=
01:50:4101:50:41## (For documentation only)
01:50:41# Contains other parameters which should be passed to the
01:50:41# JVM. The value of "append" is treated as if it were on
01:50:41# the command line so will be separated on whitespace.
01:50:41# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:50:41# results in two new arguments.
01:50:41# Note that when using `config set` from the command line
01:50:41# one may need to give a prior `--` option to prevent a value
01:50:41# starting with `-` from already being parsed as an option,
01:50:41# and values may need quoting to prevent whitespace or other
01:50:41# significant characters from being interpreted prematurely.
01:50:4101:50:41omero.jvmcfg.append=
01:50:4101:50:41## (For documentation only)
01:50:41# Manual override of the total system memory that
01:50:41# OMERO will *think* is present on the local OS (MB).
01:50:41# If unset, an attempt will be made to detect the actual
01:50:41# amount: first by using the Python library `psutil` and
01:50:41# if that is not installed, by running a Java tool. If
01:50:41# neither works, 4.0GB is assumed.
01:50:41omero.jvmcfg.system_memory=
01:50:4101:50:41## (For documentation only)
01:50:41# Suggestion for strategies as to the minimum memory
01:50:41# that they will use for calculating JVM settings (MB).
01:50:41omero.jvmcfg.min_system_memory=3414
01:50:4101:50:41## (For documentation only)
01:50:41# Suggestion for strategies as to the maximum memory
01:50:41# that they will use for calculating JVM settings (MB).
01:50:41omero.jvmcfg.max_system_memory=48000
01:50:4101:50:4101:50:41#############################################
01:50:41## Logging properties
01:50:41##
01:50:41## Note: changes to the default omero.logging values in
01:50:41## this file will *not* be reflected in OMERO.server
01:50:41## since they are defined in OMERO.py
01:50:41#############################################
01:50:4101:50:41## (For documentation only)
01:50:41# Relative server directory where the log files should be stored.
01:50:41omero.logging.directory=var/log/
01:50:4101:50:41## (For documentation only)
01:50:41# Whether the server log files should be rotated at a certain time
01:50:41# interval. If true, log files will be rolled over at midnight.
01:50:41# Otherwise, log files will be rolled over at a predetermined size,
01:50:41# see omero.logging.logsize for more information.
01:50:41omero.logging.timedlog=false
01:50:4101:50:41## (For documentation only)
01:50:41# If omero.logging.timedlog is false or unset, specifies the
01:50:41# maximum size of the server log files in bytes above which a
01:50:41# new log file should be created.
01:50:41omero.logging.logsize=5000000
01:50:4101:50:41## (For documentation only)
01:50:41# If omero.logging.timedlog is false or unset, specifies the
01:50:41# number of old server log files that should be kept. Old log
01:50:41# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:50:41omero.logging.lognum=9
01:50:4101:50:41## (For documentation only)
01:50:41# Specifies the threshold for the Python servers log files. Logging messages
01:50:41# which are less severe than this value will be ignored. For a list of
01:50:41# available values, see https://docs.python.org/3/library/logging.html#levels.
01:50:41omero.logging.level=20
01:50:4101:50:41#############################################
01:50:41## Ice overrides
01:50:41##
01:50:41## Though not used directly by OMERO, a number
01:50:41## of properties prefixed with "Ice.*" will
01:50:41## alter the behavior of the OMERO runtime
01:50:41## by configuring the Ice communicators. For a
01:50:41## full listing see:
01:50:41##
01:50:41## http://doc.zeroc.com/display/Ice/Property+Reference01:50:41## For more information see
01:50:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:50:41#############################################
01:50:4101:50:41# Disable IPv6 by setting to 0. Only needed in
01:50:41# certain situations.
01:50:41Ice.IPv6=1
01:50:4101:50:41# Glacier2Template IceSSL defaults and overrides,
01:50:41# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:50:41# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:50:41# update the corresponding IceSSL. property.
01:50:41omero.glacier2.IceSSL=
01:50:4101:50:41# Glacier2Template SSL maximum allowed protocol (mac bug)
01:50:41omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:50:41# Glacier2Template SSL allowed cipher suites
01:50:41omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:50:41# Glacier2Template SSL verification requirements
01:50:41omero.glacier2.IceSSL.VerifyPeer=0
01:50:41# Glacier2Template SSL allowed protocols
01:50:41omero.glacier2.IceSSL.Protocols=tls1
01:50:4101:50:41# Override the default set of OMERO services.
01:50:41# For example, to run OMERO.server with Blitz and Tables only
01:50:41# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:50:41# set this to ``master:Blitz-0,Tables-0``.
01:50:41# Also use this to distribute OMERO services across multiple nodes,
01:50:41# for example:
01:50:41# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:50:41# See
01:50:41# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:50:41omero.server.nodedescriptors=
01:50:4101:50:41#############################################
01:50:41## Darwin (OS X) specific defaults for templated configuration files only.
01:50:41## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:50:41## file.
01:50:41## Do not set these properties in ``omero config``, instead set the original
01:50:41## ``xxx.yyy`` property
01:50:41#############################################
01:50:41_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:50:4101:50:4101:50:4101:50:41#############################################
01:50:41## Server product name for release artifacts
01:50:41#############################################
01:50:41product.name=OMERO.server
01:50:4101:50:41#############################################
01:50:41### Properties below this marker are ignored by
01:50:41### omero.install.config_parser.PropertyParser
01:50:41### END
01:50:4101:50:41#############################################
01:50:41## Library versions
01:50:41#############################################
01:50:41##
01:50:41versions.findbugs=1.2.1
01:50:41versions.ice36=3.6.5
01:50:41versions.ice36_lib=36
01:50:41## internal
01:50:41versions.omeroshares36=3.6.3
01:50:41versions.omeromock36=3.6.3
01:50:41versions.icedb36=3.6.3
01:50:41versions.ipython=1.2.1
01:50:4101:50:41versions.janino=2.5.10
01:50:4101:50:41versions.reportng=1.1.1
01:50:4101:50:41versions.testng=7.5
01:50:41versions.velocity=1.4
01:50:4101:50:41versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:50:41versions.omero-scripts-url=${versions.omero-pypi}
01:50:4101:50:41###
01:50:41### Appended Values
01:50:41###
01:50:4101:50:41## Internal dependencies'
01:50:41+ echo '##
01:50:41## omero.properties
01:50:41## ----------------
01:50:41##
01:50:41## DO NOT EDIT!
01:50:41##
01:50:41##
01:50:41## Any of these properties can be altered by using `omero config`. MODIFYING
01:50:41## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:50:41## at compile time!
01:50:41##
01:50:41## For an overview of these properties, see
01:50:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:50:41##
01:50:41## Properties marked with "DEVELOPMENT" should not be used in production.
01:50:4101:50:41# Comma separated list of Ice transports available to clients. The default
01:50:41# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:50:41# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:50:41# will prevent all non-encrypted connections to the OMERO server.
01:50:41#
01:50:41# Additionally, there are two experimental values for using websockets:
01:50:41# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:50:41# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:50:41# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:50:41#
01:50:41# Note: When using websockets behind a web server like nginx, additional
01:50:41# configuration may be needed.
01:50:41omero.client.icetransports=ssl,tcp
01:50:4101:50:41# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:50:41# server
01:50:41omero.ports.prefix=
01:50:4101:50:41# The Glacier2 SSL port number to use
01:50:41omero.ports.ssl=4064
01:50:4101:50:41# The Glacier2 TCP port number to use (unencrypted)
01:50:41omero.ports.tcp=4063
01:50:4101:50:41# The Glacier2 WSS port number to use
01:50:41omero.ports.wss=4066
01:50:4101:50:41# The Glacier2 WS port number to use (unencrypted)
01:50:41omero.ports.ws=4065
01:50:4101:50:41# The IceGrid registry port number to use
01:50:41omero.ports.registry=4061
01:50:4101:50:41#############################################
01:50:41## JVM configuration
01:50:41##
01:50:41## Note: changes to the omero.jvmcfg properties
01:50:41## will *not* be reflected in OMERO.server
01:50:41## since they are defined in OMERO.py.
01:50:41#############################################
01:50:41## (For documentation only)
01:50:41# Memory strategy which will be used by default.
01:50:41# Options include: percent, manual
01:50:41omero.jvmcfg.strategy=percent
01:50:4101:50:41## (For documentation only)
01:50:41# Explicit value for the `-Xmx` argument, e.g.
01:50:41# "1g"
01:50:41omero.jvmcfg.heap_size=
01:50:4101:50:41## (For documentation only)
01:50:41# Explicit value for the MaxPermSize argument
01:50:41# to the JVM, e.g. "500M". Ignored for Java8+
01:50:41omero.jvmcfg.perm_gen=
01:50:4101:50:41## (For documentation only)
01:50:41# Toggles on or off heap dumps on OOMs. Default is "off".
01:50:41# The special value "tmp" will create the heap dumps in
01:50:41# your temp directory.
01:50:41omero.jvmcfg.heap_dump=
01:50:4101:50:41## (For documentation only)
01:50:41# Used only by the percent strategy. An integer between 0
01:50:41# and 100 which is the percent of active memory that will
01:50:41# be used by the service.
01:50:41omero.jvmcfg.percent=
01:50:4101:50:41## (For documentation only)
01:50:41# Contains other parameters which should be passed to the
01:50:41# JVM. The value of "append" is treated as if it were on
01:50:41# the command line so will be separated on whitespace.
01:50:41# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:50:41# results in two new arguments.
01:50:41# Note that when using `config set` from the command line
01:50:41# one may need to give a prior `--` option to prevent a value
01:50:41# starting with `-` from already being parsed as an option,
01:50:41# and values may need quoting to prevent whitespace or other
01:50:41# significant characters from being interpreted prematurely.
01:50:4101:50:41omero.jvmcfg.append=
01:50:4101:50:41## (For documentation only)
01:50:41# Manual override of the total system memory that
01:50:41# OMERO will *think* is present on the local OS (MB).
01:50:41# If unset, an attempt will be made to detect the actual
01:50:41# amount: first by using the Python library `psutil` and
01:50:41# if that is not installed, by running a Java tool. If
01:50:41# neither works, 4.0GB is assumed.
01:50:41omero.jvmcfg.system_memory=
01:50:4101:50:41## (For documentation only)
01:50:41# Suggestion for strategies as to the minimum memory
01:50:41# that they will use for calculating JVM settings (MB).
01:50:41omero.jvmcfg.min_system_memory=3414
01:50:4101:50:41## (For documentation only)
01:50:41# Suggestion for strategies as to the maximum memory
01:50:41# that they will use for calculating JVM settings (MB).
01:50:41omero.jvmcfg.max_system_memory=48000
01:50:4101:50:4101:50:41#############################################
01:50:41## Logging properties
01:50:41##
01:50:41## Note: changes to the default omero.logging values in
01:50:41## this file will *not* be reflected in OMERO.server
01:50:41## since they are defined in OMERO.py
01:50:41#############################################
01:50:4101:50:41## (For documentation only)
01:50:41# Relative server directory where the log files should be stored.
01:50:41omero.logging.directory=var/log/
01:50:4101:50:41## (For documentation only)
01:50:41# Whether the server log files should be rotated at a certain time
01:50:41# interval. If true, log files will be rolled over at midnight.
01:50:41# Otherwise, log files will be rolled over at a predetermined size,
01:50:41# see omero.logging.logsize for more information.
01:50:41omero.logging.timedlog=false
01:50:4101:50:41## (For documentation only)
01:50:41# If omero.logging.timedlog is false or unset, specifies the
01:50:41# maximum size of the server log files in bytes above which a
01:50:41# new log file should be created.
01:50:41omero.logging.logsize=5000000
01:50:4101:50:41## (For documentation only)
01:50:41# If omero.logging.timedlog is false or unset, specifies the
01:50:41# number of old server log files that should be kept. Old log
01:50:41# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:50:41omero.logging.lognum=9
01:50:4101:50:41## (For documentation only)
01:50:41# Specifies the threshold for the Python servers log files. Logging messages
01:50:41# which are less severe than this value will be ignored. For a list of
01:50:41# available values, see https://docs.python.org/3/library/logging.html#levels.
01:50:41omero.logging.level=20
01:50:4101:50:41#############################################
01:50:41## Ice overrides
01:50:41##
01:50:41## Though not used directly by OMERO, a number
01:50:41## of properties prefixed with "Ice.*" will
01:50:41## alter the behavior of the OMERO runtime
01:50:41## by configuring the Ice communicators. For a
01:50:41## full listing see:
01:50:41##
01:50:41## http://doc.zeroc.com/display/Ice/Property+Reference01:50:41## For more information see
01:50:41## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:50:41#############################################
01:50:4101:50:41# Disable IPv6 by setting to 0. Only needed in
01:50:41# certain situations.
01:50:41Ice.IPv6=1
01:50:4101:50:41# Glacier2Template IceSSL defaults and overrides,
01:50:41# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:50:41# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:50:41# update the corresponding IceSSL. property.
01:50:41omero.glacier2.IceSSL=
01:50:4101:50:41# Glacier2Template SSL maximum allowed protocol (mac bug)
01:50:41omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:50:41# Glacier2Template SSL allowed cipher suites
01:50:41omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:50:41# Glacier2Template SSL verification requirements
01:50:41omero.glacier2.IceSSL.VerifyPeer=0
01:50:41# Glacier2Template SSL allowed protocols
01:50:41omero.glacier2.IceSSL.Protocols=tls1
01:50:4101:50:41# Override the default set of OMERO services.
01:50:41# For example, to run OMERO.server with Blitz and Tables only
01:50:41# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:50:41# set this to ``master:Blitz-0,Tables-0``.
01:50:41# Also use this to distribute OMERO services across multiple nodes,
01:50:41# for example:
01:50:41# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:50:41# See
01:50:41# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:50:41omero.server.nodedescriptors=
01:50:4101:50:41#############################################
01:50:41## Darwin (OS X) specific defaults for templated configuration files only.
01:50:41## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:50:41## file.
01:50:41## Do not set these properties in ``omero config``, instead set the original
01:50:41## ``xxx.yyy`` property
01:50:41#############################################
01:50:41_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:50:4101:50:4101:50:4101:50:41#############################################
01:50:41## Server product name for release artifacts
01:50:41#############################################
01:50:41product.name=OMERO.server
01:50:4101:50:41#############################################
01:50:41### Properties below this marker are ignored by
01:50:41### omero.install.config_parser.PropertyParser
01:50:41### END
01:50:4101:50:41#############################################
01:50:41## Library versions
01:50:41#############################################
01:50:41##
01:50:41versions.findbugs=1.2.1
01:50:41versions.ice36=3.6.5
01:50:41versions.ice36_lib=36
01:50:41## internal
01:50:41versions.omeroshares36=3.6.3
01:50:41versions.omeromock36=3.6.3
01:50:41versions.icedb36=3.6.3
01:50:41versions.ipython=1.2.1
01:50:4101:50:41versions.janino=2.5.10
01:50:4101:50:41versions.reportng=1.1.1
01:50:4101:50:41versions.testng=7.5
01:50:41versions.velocity=1.4
01:50:4101:50:41versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:50:41versions.omero-scripts-url=${versions.omero-pypi}
01:50:4101:50:41###
01:50:41### Appended Values
01:50:41###
01:50:4101:50:41## Internal dependencies'
01:50:41+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/01:50:41+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive01:50:41+ echo versions.scripts-prefix=
01:50:41+ echo versions.scripts=merge_ci
01:50:41+ cat /home/omero/workspace/OMERO-push/version.properties
01:50:41+ git commit -a -m 'Add version.properties to etc/omero.properties'
01:50:41[detached HEAD 99dd296a2f] Add version.properties to etc/omero.properties
01:50:41 1 file changed, 47 insertions(+), 7 deletions(-)
01:50:41+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
01:50:43To github.com:snoopycrimecop/openmicroscopy.git
01:50:43 + 3d977bc48e...99dd296a2f HEAD -> merge_ci (forced update)
01:50:43Finished: SUCCESS
![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
