17:04:40Started by upstream project "Trigger" build number 14417:04:40originally caused by:
17:04:40 Started by user devspace17:04:40Running as SYSTEM
17:04:40Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
17:04:41The recommended git tool is: NONE
17:04:41No credentials specified
17:04:41 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
17:04:41Fetching changes from the remote Git repository
17:04:41 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
17:04:41Fetching upstream changes from https://github.com/ome/openmicroscopy.git17:04:41 > git --version # timeout=10
17:04:41 > git --version # 'git version 2.52.0'
17:04:41 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
17:04:48 > git rev-parse origin/develop^{commit} # timeout=10
17:04:48Checking out Revision 7b02e173accf5faba061e1841986a90b8f6dfa77 (origin/develop)
17:04:48 > git config core.sparsecheckout # timeout=10
17:04:48 > git checkout -f 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=30
17:04:51Commit message: "Merge pull request #6478 from dominikl/ozpb_2"
17:04:51 > git rev-list --no-walk 7b02e173accf5faba061e1841986a90b8f6dfa77 # timeout=10
17:04:51Cleaning workspace
17:04:51 > git rev-parse --verify HEAD # timeout=10
17:04:51Resetting working tree
17:04:51 > git reset --hard # timeout=10
17:04:51 > git clean -fdx # timeout=10
17:04:52Copied 1 artifact from "OMERO-python-superbuild-build" build number 11117:04:52[OMERO-push] $ /bin/bash -xe /tmp/jenkins17211554562105582824.sh
17:04:52+ rm -rf /home/omero/workspace/OMERO-push/venv
17:05:21+ python3.11 -m venv /home/omero/workspace/OMERO-push/venv
17:05:41+ source /home/omero/workspace/OMERO-push/venv/bin/activate
17:05:41++ deactivate nondestructive
17:05:41++ '[' -n '' ']'
17:05:41++ '[' -n '' ']'
17:05:41++ hash -r
17:05:41++ '[' -n '' ']'
17:05:41++ unset VIRTUAL_ENV
17:05:41++ unset VIRTUAL_ENV_PROMPT
17:05:41++ '[' '!' nondestructive = nondestructive ']'
17:05:41++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
17:05:41++ export VIRTUAL_ENV
17:05:41++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:05:41++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:05:41++ export PATH
17:05:41++ '[' -n '' ']'
17:05:41++ '[' -z '' ']'
17:05:41++ _OLD_VIRTUAL_PS1=
17:05:41++ PS1='(venv) '
17:05:41++ export PS1
17:05:41++ VIRTUAL_ENV_PROMPT='(venv) '
17:05:41++ export VIRTUAL_ENV_PROMPT
17:05:41++ hash -r
17:05:41+ python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
17:05:42Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a7017:05:42 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
17:05:42Installing collected packages: pip
17:05:42 Attempting uninstall: pip
17:05:42 Found existing installation: pip 24.0
17:05:42 Uninstalling pip-24.0:
17:05:42 Successfully uninstalled pip-24.0
17:05:52Successfully installed pip-26.2.2
17:05:5217:05:52[notice] A new release of pip is available: 26.2.2 -> 26.3
17:05:52[notice] To update, run: pip install --upgrade pip
17:05:52+ python -m pip install --upgrade certifi
17:05:53Collecting certifi
17:05:53 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
17:05:53Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
17:05:53Installing collected packages: certifi
17:05:53Successfully installed certifi-2026.10.23
17:05:5317:05:53[notice] A new release of pip is available: 26.2.2 -> 26.3
17:05:53[notice] To update, run: pip install --upgrade pip
17:05:53+ pip install -U scc
17:05:54Collecting scc
17:05:54 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
17:05:54Collecting PyGithub>=1.54 (from scc)
17:05:54 Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
17:05:54Collecting PyYAML>=5.1 (from scc)
17:05:54 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
17:05:54Collecting future (from scc)
17:05:54 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
17:05:54Collecting ruamel.yaml (from scc)
17:05:54 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
17:05:54Collecting ruamel.yaml.jinja2 (from scc)
17:05:54 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
17:05:54Collecting six (from scc)
17:05:54 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
17:05:54Collecting urllib3<2 (from scc)
17:05:54 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
17:05:55Collecting yaclifw<0.3,>=0.2.0 (from scc)
17:05:55 Using cached yaclifw-0.2.0-py3-none-any.whl
17:05:55Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
17:05:55 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
17:05:55Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
17:05:55 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
17:05:55Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:05:55 Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
17:05:55Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
17:05:55 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
17:05:55Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:05:55 Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
17:05:55Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:05:55 Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
17:05:55Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
17:05:55 Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB)
17:05:55Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
17:05:55 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
17:05:55Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
17:05:55 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
17:05:55Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23)
17:05:55Using cached scc-0.20.0-py3-none-any.whl (48 kB)
17:05:55Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
17:05:55Using cached pygithub-2.10.0-py3-none-any.whl (455 kB)
17:05:55Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB)
17:05:55Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB)
17:05:55Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB)
17:05:55Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
17:05:56Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
17:05:56Using cached requests-2.34.2-py3-none-any.whl (73 kB)
17:05:56Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
17:05:56Using cached idna-3.20-py3-none-any.whl (69 kB)
17:05:56Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
17:05:56Using cached future-1.0.0-py3-none-any.whl (491 kB)
17:05:56Using cached pycparser-3.12-py3-none-any.whl (62 kB)
17:05:56Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
17:05:56Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
17:05:56Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
17:05:56Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
17:06:1017:06:10Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
17:06:1017:06:10[notice] A new release of pip is available: 26.2.2 -> 26.3
17:06:10[notice] To update, run: pip install --upgrade pip
17:06:10+ test -e src
17:06:10+ cd src
17:06:10++ git config github.user
17:06:10+ user=snoopycrimecop
17:06:10+ scc merge develop --no-ask --reset --shallow -S success-only
17:06:162026-11-10 17:06:16,704 [ scc.merge] INFO Merging Pull Request(s) based on develop
17:06:162026-11-10 17:06:16,704 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
17:06:162026-11-10 17:06:16,704 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
17:06:162026-11-10 17:06:16,705 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
17:06:162026-11-10 17:06:16,705 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
17:06:162026-11-10 17:06:16,705 [ scc.merge] INFO Excluding Pull Request(s) without successful status
17:06:322026-11-10 17:06:32,302 [ scc.merge] INFO Repository: ome/openmicroscopy
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO Excluded PRs:
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO Already up to date.
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO Merged PRs:
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
17:06:322026-11-10 17:06:32,303 [ scc.merge] INFO
17:06:32+ cp etc/omero.properties etc/omero.properties.bak
17:06:32+ rm etc/omero.properties
17:06:32+ touch etc/omero.properties
17:06:32++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
17:06:32+ ne=249
17:06:32++ sed -n 1,249p etc/omero.properties.bak
17:06:32+ line='##
17:06:32## omero.properties
17:06:32## ----------------
17:06:32##
17:06:32## DO NOT EDIT!
17:06:32##
17:06:32##
17:06:32## Any of these properties can be altered by using `omero config`. MODIFYING
17:06:32## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
17:06:32## at compile time!
17:06:32##
17:06:32## For an overview of these properties, see
17:06:32## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html17:06:32##
17:06:32## Properties marked with "DEVELOPMENT" should not be used in production.
17:06:3217:06:32# Comma separated list of Ice transports available to clients. The default
17:06:32# value ("ssl,tcp") instructs Ice to open the ports specified by the
17:06:32# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
17:06:32# will prevent all non-encrypted connections to the OMERO server.
17:06:32#
17:06:32# Additionally, there are two experimental values for using websockets:
17:06:32# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
17:06:32# that are opened are controlled by the omero.ports.ws and omero.ports.wss
17:06:32# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
17:06:32#
17:06:32# Note: When using websockets behind a web server like nginx, additional
17:06:32# configuration may be needed.
17:06:32omero.client.icetransports=ssl,tcp
17:06:3217:06:32# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
17:06:32# server
17:06:32omero.ports.prefix=
17:06:3217:06:32# The Glacier2 SSL port number to use
17:06:32omero.ports.ssl=4064
17:06:3217:06:32# The Glacier2 TCP port number to use (unencrypted)
17:06:32omero.ports.tcp=4063
17:06:3217:06:32# The Glacier2 WSS port number to use
17:06:32omero.ports.wss=4066
17:06:3217:06:32# The Glacier2 WS port number to use (unencrypted)
17:06:32omero.ports.ws=4065
17:06:3217:06:32# The IceGrid registry port number to use
17:06:32omero.ports.registry=4061
17:06:3217:06:32#############################################
17:06:32## JVM configuration
17:06:32##
17:06:32## Note: changes to the omero.jvmcfg properties
17:06:32## will *not* be reflected in OMERO.server
17:06:32## since they are defined in OMERO.py.
17:06:32#############################################
17:06:32## (For documentation only)
17:06:32# Memory strategy which will be used by default.
17:06:32# Options include: percent, manual
17:06:32omero.jvmcfg.strategy=percent
17:06:3217:06:32## (For documentation only)
17:06:32# Explicit value for the `-Xmx` argument, e.g.
17:06:32# "1g"
17:06:32omero.jvmcfg.heap_size=
17:06:3217:06:32## (For documentation only)
17:06:32# Explicit value for the MaxPermSize argument
17:06:32# to the JVM, e.g. "500M". Ignored for Java8+
17:06:32omero.jvmcfg.perm_gen=
17:06:3217:06:32## (For documentation only)
17:06:32# Toggles on or off heap dumps on OOMs. Default is "off".
17:06:32# The special value "tmp" will create the heap dumps in
17:06:32# your temp directory.
17:06:32omero.jvmcfg.heap_dump=
17:06:3217:06:32## (For documentation only)
17:06:32# Used only by the percent strategy. An integer between 0
17:06:32# and 100 which is the percent of active memory that will
17:06:32# be used by the service.
17:06:32omero.jvmcfg.percent=
17:06:3217:06:32## (For documentation only)
17:06:32# Contains other parameters which should be passed to the
17:06:32# JVM. The value of "append" is treated as if it were on
17:06:32# the command line so will be separated on whitespace.
17:06:32# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
17:06:32# results in two new arguments.
17:06:32# Note that when using `config set` from the command line
17:06:32# one may need to give a prior `--` option to prevent a value
17:06:32# starting with `-` from already being parsed as an option,
17:06:32# and values may need quoting to prevent whitespace or other
17:06:32# significant characters from being interpreted prematurely.
17:06:3217:06:32omero.jvmcfg.append=
17:06:3217:06:32## (For documentation only)
17:06:32# Manual override of the total system memory that
17:06:32# OMERO will *think* is present on the local OS (MB).
17:06:32# If unset, an attempt will be made to detect the actual
17:06:32# amount: first by using the Python library `psutil` and
17:06:32# if that is not installed, by running a Java tool. If
17:06:32# neither works, 4.0GB is assumed.
17:06:32omero.jvmcfg.system_memory=
17:06:3217:06:32## (For documentation only)
17:06:32# Suggestion for strategies as to the minimum memory
17:06:32# that they will use for calculating JVM settings (MB).
17:06:32omero.jvmcfg.min_system_memory=3414
17:06:3217:06:32## (For documentation only)
17:06:32# Suggestion for strategies as to the maximum memory
17:06:32# that they will use for calculating JVM settings (MB).
17:06:32omero.jvmcfg.max_system_memory=48000
17:06:3217:06:3217:06:32#############################################
17:06:32## Logging properties
17:06:32##
17:06:32## Note: changes to the default omero.logging values in
17:06:32## this file will *not* be reflected in OMERO.server
17:06:32## since they are defined in OMERO.py
17:06:32#############################################
17:06:3217:06:32## (For documentation only)
17:06:32# Relative server directory where the log files should be stored.
17:06:32omero.logging.directory=var/log/
17:06:3217:06:32## (For documentation only)
17:06:32# Whether the server log files should be rotated at a certain time
17:06:32# interval. If true, log files will be rolled over at midnight.
17:06:32# Otherwise, log files will be rolled over at a predetermined size,
17:06:32# see omero.logging.logsize for more information.
17:06:32omero.logging.timedlog=false
17:06:3217:06:32## (For documentation only)
17:06:32# If omero.logging.timedlog is false or unset, specifies the
17:06:32# maximum size of the server log files in bytes above which a
17:06:32# new log file should be created.
17:06:32omero.logging.logsize=5000000
17:06:3217:06:32## (For documentation only)
17:06:32# If omero.logging.timedlog is false or unset, specifies the
17:06:32# number of old server log files that should be kept. Old log
17:06:32# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
17:06:32omero.logging.lognum=9
17:06:3217:06:32## (For documentation only)
17:06:32# Specifies the threshold for the Python servers log files. Logging messages
17:06:32# which are less severe than this value will be ignored. For a list of
17:06:32# available values, see https://docs.python.org/3/library/logging.html#levels.
17:06:32omero.logging.level=20
17:06:3217:06:32#############################################
17:06:32## Ice overrides
17:06:32##
17:06:32## Though not used directly by OMERO, a number
17:06:32## of properties prefixed with "Ice.*" will
17:06:32## alter the behavior of the OMERO runtime
17:06:32## by configuring the Ice communicators. For a
17:06:32## full listing see:
17:06:32##
17:06:32## http://doc.zeroc.com/display/Ice/Property+Reference17:06:32## For more information see
17:06:32## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start17:06:32#############################################
17:06:3217:06:32# Disable IPv6 by setting to 0. Only needed in
17:06:32# certain situations.
17:06:32Ice.IPv6=1
17:06:3217:06:32# Glacier2Template IceSSL defaults and overrides,
17:06:32# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
17:06:32# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
17:06:32# update the corresponding IceSSL. property.
17:06:32omero.glacier2.IceSSL=
17:06:3217:06:32# Glacier2Template SSL maximum allowed protocol (mac bug)
17:06:32omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
17:06:32# Glacier2Template SSL allowed cipher suites
17:06:32omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
17:06:32# Glacier2Template SSL verification requirements
17:06:32omero.glacier2.IceSSL.VerifyPeer=0
17:06:32# Glacier2Template SSL allowed protocols
17:06:32omero.glacier2.IceSSL.Protocols=tls1
17:06:3217:06:32# Override the default set of OMERO services.
17:06:32# For example, to run OMERO.server with Blitz and Tables only
17:06:32# (i.e. disable Processor, DropBox, Indexer, PixelData)
17:06:32# set this to ``master:Blitz-0,Tables-0``.
17:06:32# Also use this to distribute OMERO services across multiple nodes,
17:06:32# for example:
17:06:32# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
17:06:32# See
17:06:32# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples17:06:32omero.server.nodedescriptors=
17:06:3217:06:32#############################################
17:06:32## Darwin (OS X) specific defaults for templated configuration files only.
17:06:32## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
17:06:32## file.
17:06:32## Do not set these properties in ``omero config``, instead set the original
17:06:32## ``xxx.yyy`` property
17:06:32#############################################
17:06:32_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
17:06:3217:06:32## (For documentation only)
17:06:32# Name of the Python module to use when starting the Tables service
17:06:32omero.tables.module=runTables
17:06:3217:06:32#############################################
17:06:32## Server product name for release artifacts
17:06:32#############################################
17:06:32product.name=OMERO.server
17:06:3217:06:32#############################################
17:06:32### Properties below this marker are ignored by
17:06:32### omero.install.config_parser.PropertyParser
17:06:32### END
17:06:3217:06:32#############################################
17:06:32## Library versions
17:06:32#############################################
17:06:32##
17:06:32versions.findbugs=1.2.1
17:06:32versions.ice36=3.6.5
17:06:32versions.ice36_lib=36
17:06:32## internal
17:06:32versions.omeroshares36=3.6.3
17:06:32versions.omeromock36=3.6.3
17:06:32versions.icedb36=3.6.3
17:06:32versions.ipython=1.2.1
17:06:3217:06:32versions.janino=2.5.10
17:06:3217:06:32versions.reportng=1.1.1
17:06:3217:06:32versions.testng=7.5
17:06:32versions.velocity=1.4
17:06:3217:06:32versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE17:06:32versions.omero-scripts-url=${versions.omero-pypi}
17:06:3217:06:32###
17:06:32### Appended Values
17:06:32###
17:06:3217:06:32## Internal dependencies'
17:06:32+ printf 'JENKINS_URL=%s\n' https://merge-ci.openmicroscopy.org/jenkins/17:06:32JENKINS_URL=https://merge-ci.openmicroscopy.org/jenkins/17:06:32+ JENKINS_URL=http://172.18.0.8:8080/jenkins/17:06:32+ echo '##
17:06:32## omero.properties
17:06:32## ----------------
17:06:32##
17:06:32## DO NOT EDIT!
17:06:32##
17:06:32##
17:06:32## Any of these properties can be altered by using `omero config`. MODIFYING
17:06:32## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
17:06:32## at compile time!
17:06:32##
17:06:32## For an overview of these properties, see
17:06:32## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html17:06:32##
17:06:32## Properties marked with "DEVELOPMENT" should not be used in production.
17:06:3217:06:32# Comma separated list of Ice transports available to clients. The default
17:06:32# value ("ssl,tcp") instructs Ice to open the ports specified by the
17:06:32# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
17:06:32# will prevent all non-encrypted connections to the OMERO server.
17:06:32#
17:06:32# Additionally, there are two experimental values for using websockets:
17:06:32# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
17:06:32# that are opened are controlled by the omero.ports.ws and omero.ports.wss
17:06:32# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
17:06:32#
17:06:32# Note: When using websockets behind a web server like nginx, additional
17:06:32# configuration may be needed.
17:06:32omero.client.icetransports=ssl,tcp
17:06:3217:06:32# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
17:06:32# server
17:06:32omero.ports.prefix=
17:06:3217:06:32# The Glacier2 SSL port number to use
17:06:32omero.ports.ssl=4064
17:06:3217:06:32# The Glacier2 TCP port number to use (unencrypted)
17:06:32omero.ports.tcp=4063
17:06:3217:06:32# The Glacier2 WSS port number to use
17:06:32omero.ports.wss=4066
17:06:3217:06:32# The Glacier2 WS port number to use (unencrypted)
17:06:32omero.ports.ws=4065
17:06:3217:06:32# The IceGrid registry port number to use
17:06:32omero.ports.registry=4061
17:06:3217:06:32#############################################
17:06:32## JVM configuration
17:06:32##
17:06:32## Note: changes to the omero.jvmcfg properties
17:06:32## will *not* be reflected in OMERO.server
17:06:32## since they are defined in OMERO.py.
17:06:32#############################################
17:06:32## (For documentation only)
17:06:32# Memory strategy which will be used by default.
17:06:32# Options include: percent, manual
17:06:32omero.jvmcfg.strategy=percent
17:06:3217:06:32## (For documentation only)
17:06:32# Explicit value for the `-Xmx` argument, e.g.
17:06:32# "1g"
17:06:32omero.jvmcfg.heap_size=
17:06:3217:06:32## (For documentation only)
17:06:32# Explicit value for the MaxPermSize argument
17:06:32# to the JVM, e.g. "500M". Ignored for Java8+
17:06:32omero.jvmcfg.perm_gen=
17:06:3217:06:32## (For documentation only)
17:06:32# Toggles on or off heap dumps on OOMs. Default is "off".
17:06:32# The special value "tmp" will create the heap dumps in
17:06:32# your temp directory.
17:06:32omero.jvmcfg.heap_dump=
17:06:3217:06:32## (For documentation only)
17:06:32# Used only by the percent strategy. An integer between 0
17:06:32# and 100 which is the percent of active memory that will
17:06:32# be used by the service.
17:06:32omero.jvmcfg.percent=
17:06:3217:06:32## (For documentation only)
17:06:32# Contains other parameters which should be passed to the
17:06:32# JVM. The value of "append" is treated as if it were on
17:06:32# the command line so will be separated on whitespace.
17:06:32# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
17:06:32# results in two new arguments.
17:06:32# Note that when using `config set` from the command line
17:06:32# one may need to give a prior `--` option to prevent a value
17:06:32# starting with `-` from already being parsed as an option,
17:06:32# and values may need quoting to prevent whitespace or other
17:06:32# significant characters from being interpreted prematurely.
17:06:3217:06:32omero.jvmcfg.append=
17:06:3217:06:32## (For documentation only)
17:06:32# Manual override of the total system memory that
17:06:32# OMERO will *think* is present on the local OS (MB).
17:06:32# If unset, an attempt will be made to detect the actual
17:06:32# amount: first by using the Python library `psutil` and
17:06:32# if that is not installed, by running a Java tool. If
17:06:32# neither works, 4.0GB is assumed.
17:06:32omero.jvmcfg.system_memory=
17:06:3217:06:32## (For documentation only)
17:06:32# Suggestion for strategies as to the minimum memory
17:06:32# that they will use for calculating JVM settings (MB).
17:06:32omero.jvmcfg.min_system_memory=3414
17:06:3217:06:32## (For documentation only)
17:06:32# Suggestion for strategies as to the maximum memory
17:06:32# that they will use for calculating JVM settings (MB).
17:06:32omero.jvmcfg.max_system_memory=48000
17:06:3217:06:3217:06:32#############################################
17:06:32## Logging properties
17:06:32##
17:06:32## Note: changes to the default omero.logging values in
17:06:32## this file will *not* be reflected in OMERO.server
17:06:32## since they are defined in OMERO.py
17:06:32#############################################
17:06:3217:06:32## (For documentation only)
17:06:32# Relative server directory where the log files should be stored.
17:06:32omero.logging.directory=var/log/
17:06:3217:06:32## (For documentation only)
17:06:32# Whether the server log files should be rotated at a certain time
17:06:32# interval. If true, log files will be rolled over at midnight.
17:06:32# Otherwise, log files will be rolled over at a predetermined size,
17:06:32# see omero.logging.logsize for more information.
17:06:32omero.logging.timedlog=false
17:06:3217:06:32## (For documentation only)
17:06:32# If omero.logging.timedlog is false or unset, specifies the
17:06:32# maximum size of the server log files in bytes above which a
17:06:32# new log file should be created.
17:06:32omero.logging.logsize=5000000
17:06:3217:06:32## (For documentation only)
17:06:32# If omero.logging.timedlog is false or unset, specifies the
17:06:32# number of old server log files that should be kept. Old log
17:06:32# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
17:06:32omero.logging.lognum=9
17:06:3217:06:32## (For documentation only)
17:06:32# Specifies the threshold for the Python servers log files. Logging messages
17:06:32# which are less severe than this value will be ignored. For a list of
17:06:32# available values, see https://docs.python.org/3/library/logging.html#levels.
17:06:32omero.logging.level=20
17:06:3217:06:32#############################################
17:06:32## Ice overrides
17:06:32##
17:06:32## Though not used directly by OMERO, a number
17:06:32## of properties prefixed with "Ice.*" will
17:06:32## alter the behavior of the OMERO runtime
17:06:32## by configuring the Ice communicators. For a
17:06:32## full listing see:
17:06:32##
17:06:32## http://doc.zeroc.com/display/Ice/Property+Reference17:06:32## For more information see
17:06:32## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start17:06:32#############################################
17:06:3217:06:32# Disable IPv6 by setting to 0. Only needed in
17:06:32# certain situations.
17:06:32Ice.IPv6=1
17:06:3217:06:32# Glacier2Template IceSSL defaults and overrides,
17:06:32# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
17:06:32# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
17:06:32# update the corresponding IceSSL. property.
17:06:32omero.glacier2.IceSSL=
17:06:3217:06:32# Glacier2Template SSL maximum allowed protocol (mac bug)
17:06:32omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
17:06:32# Glacier2Template SSL allowed cipher suites
17:06:32omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
17:06:32# Glacier2Template SSL verification requirements
17:06:32omero.glacier2.IceSSL.VerifyPeer=0
17:06:32# Glacier2Template SSL allowed protocols
17:06:32omero.glacier2.IceSSL.Protocols=tls1
17:06:3217:06:32# Override the default set of OMERO services.
17:06:32# For example, to run OMERO.server with Blitz and Tables only
17:06:32# (i.e. disable Processor, DropBox, Indexer, PixelData)
17:06:32# set this to ``master:Blitz-0,Tables-0``.
17:06:32# Also use this to distribute OMERO services across multiple nodes,
17:06:32# for example:
17:06:32# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
17:06:32# See
17:06:32# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples17:06:32omero.server.nodedescriptors=
17:06:3217:06:32#############################################
17:06:32## Darwin (OS X) specific defaults for templated configuration files only.
17:06:32## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
17:06:32## file.
17:06:32## Do not set these properties in ``omero config``, instead set the original
17:06:32## ``xxx.yyy`` property
17:06:32#############################################
17:06:32_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
17:06:3217:06:32## (For documentation only)
17:06:32# Name of the Python module to use when starting the Tables service
17:06:32omero.tables.module=runTables
17:06:3217:06:32#############################################
17:06:32## Server product name for release artifacts
17:06:32#############################################
17:06:32product.name=OMERO.server
17:06:3217:06:32#############################################
17:06:32### Properties below this marker are ignored by
17:06:32### omero.install.config_parser.PropertyParser
17:06:32### END
17:06:3217:06:32#############################################
17:06:32## Library versions
17:06:32#############################################
17:06:32##
17:06:32versions.findbugs=1.2.1
17:06:32versions.ice36=3.6.5
17:06:32versions.ice36_lib=36
17:06:32## internal
17:06:32versions.omeroshares36=3.6.3
17:06:32versions.omeromock36=3.6.3
17:06:32versions.icedb36=3.6.3
17:06:32versions.ipython=1.2.1
17:06:3217:06:32versions.janino=2.5.10
17:06:3217:06:32versions.reportng=1.1.1
17:06:3217:06:32versions.testng=7.5
17:06:32versions.velocity=1.4
17:06:3217:06:32versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE17:06:32versions.omero-scripts-url=${versions.omero-pypi}
17:06:3217:06:32###
17:06:32### Appended Values
17:06:32###
17:06:3217:06:32## Internal dependencies'
17:06:32+ echo versions.omero-pypi=http://172.18.0.8:8080/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/17:06:32+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive17:06:32+ echo versions.scripts-prefix=
17:06:32+ echo versions.scripts=merge_ci
17:06:32++ curl -fsSL http://172.18.0.8:8080/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv17:06:32++ cut -f3
17:06:32curl: (7) Failed to connect to 172.18.0.8 port 8080: Connection refused
17:06:32+ OZPB_VERSION=
17:06:32+ echo versions.omero-zarr-pixel-buffer=
17:06:32+ cat /home/omero/workspace/OMERO-push/version.properties
17:06:32+ git commit -a -m 'Add version.properties to etc/omero.properties'
17:06:32[detached HEAD 8ac8373d33] Add version.properties to etc/omero.properties
17:06:32 1 file changed, 46 insertions(+), 6 deletions(-)
17:06:32+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
17:06:36To github.com:snoopycrimecop/openmicroscopy.git
17:06:36 + 82f58e45dc...8ac8373d33 HEAD -> merge_ci (forced update)
17:06:36Finished: SUCCESS
