13:04:14Started by upstream project "Trigger" build number 15013:04:14originally caused by:
13:04:14 Started by user devspace13:04:14 Restarted from build #149, stage OMERO Distribution
13:04:14Running as SYSTEM
13:04:14Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
13:04:14The recommended git tool is: NONE
13:04:14No credentials specified
13:04:14 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
13:04:14Fetching changes from the remote Git repository
13:04:14 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
13:04:14Fetching upstream changes from https://github.com/ome/openmicroscopy.git13:04:14 > git --version # timeout=10
13:04:14 > git --version # 'git version 2.39.3'
13:04:14 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:04:14 > git rev-parse origin/develop^{commit} # timeout=10
13:04:14Checking out Revision f90ece95244000fe8ce3591fa45cd86627e4936b (origin/develop)
13:04:14 > git config core.sparsecheckout # timeout=10
13:04:14 > git checkout -f f90ece95244000fe8ce3591fa45cd86627e4936b # timeout=30
13:04:14Commit message: "Merge pull request #6388 from sbesson/ivy_2.5.2"
13:04:14 > git rev-list --no-walk f90ece95244000fe8ce3591fa45cd86627e4936b # timeout=10
13:04:14Cleaning workspace
13:04:14 > git rev-parse --verify HEAD # timeout=10
13:04:14Resetting working tree
13:04:14 > git reset --hard # timeout=10
13:04:14 > git clean -fdx # timeout=10
13:04:14Copied 1 artifact from "OMERO-python-superbuild-build" build number 12613:04:14[OMERO-push] $ /bin/bash -xe /tmp/jenkins11199173443392349187.sh
13:04:14+ python3 -mvenv venv
13:04:16+ source /home/omero/workspace/OMERO-push/venv/bin/activate
13:04:16++ deactivate nondestructive
13:04:16++ '[' -n '' ']'
13:04:16++ '[' -n '' ']'
13:04:16++ '[' -n /bin/bash -o -n '' ']'
13:04:16++ hash -r
13:04:16++ '[' -n '' ']'
13:04:16++ unset VIRTUAL_ENV
13:04:16++ '[' '!' nondestructive = nondestructive ']'
13:04:16++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
13:04:16++ export VIRTUAL_ENV
13:04:16++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:04:16++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:04:16++ export PATH
13:04:16++ '[' -n '' ']'
13:04:16++ '[' -z '' ']'
13:04:16++ _OLD_VIRTUAL_PS1=
13:04:16++ PS1='(venv) '
13:04:16++ export PS1
13:04:16++ '[' -n /bin/bash -o -n '' ']'
13:04:16++ hash -r
13:04:16+ pip install -U pip
13:04:17Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.1.2)
13:04:17+ pip install -U scc
13:04:17Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
13:04:17Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
13:04:17Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
13:04:17Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
13:04:17Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
13:04:17Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
13:04:17Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
13:04:17Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
13:04:17Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
13:04:17Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
13:04:17Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
13:04:17Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
13:04:17Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
13:04:17Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
13:04:17Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
13:04:17Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
13:04:17Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
13:04:17Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
13:04:17Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
13:04:17Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
13:04:17Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
13:04:17Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
13:04:17+ test -e src
13:04:17+ cd src
13:04:17++ git config github.user
13:04:17+ user=snoopycrimecop
13:04:17+ scc merge develop --no-ask --reset --shallow -S success-only
13:04:222024-07-24 13:04:22,074 [ scc.merge] INFO Merging Pull Request(s) based on develop
13:04:222024-07-24 13:04:22,074 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
13:04:222024-07-24 13:04:22,074 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
13:04:222024-07-24 13:04:22,074 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
13:04:222024-07-24 13:04:22,074 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
13:04:222024-07-24 13:04:22,074 [ scc.merge] INFO Excluding Pull Request(s) without successful status
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO Repository: ome/openmicroscopy
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO Excluded PRs:
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO Already up to date.
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO Merged PRs:
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6309 jburel 'add try block'
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)'
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6395 sbesson 'Update IceGrid templates to make the OMERO.tables module configurable'
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO - PR 6397 knabar 'Tests for get_where_list and slice table API calls'
13:04:492024-07-24 13:04:49,678 [ scc.merge] INFO
13:04:49+ cp etc/omero.properties etc/omero.properties.bak
13:04:49+ rm etc/omero.properties
13:04:49+ touch etc/omero.properties
13:04:49++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
13:04:49+ ne=249
13:04:49++ sed -n 1,249p etc/omero.properties.bak
13:04:49+ line='##
13:04:49## omero.properties
13:04:49## ----------------
13:04:49##
13:04:49## DO NOT EDIT!
13:04:49##
13:04:49##
13:04:49## Any of these properties can be altered by using `omero config`. MODIFYING
13:04:49## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
13:04:49## at compile time!
13:04:49##
13:04:49## For an overview of these properties, see
13:04:49## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html13:04:49##
13:04:49## Properties marked with "DEVELOPMENT" should not be used in production.
13:04:4913:04:49# Comma separated list of Ice transports available to clients. The default
13:04:49# value ("ssl,tcp") instructs Ice to open the ports specified by the
13:04:49# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
13:04:49# will prevent all non-encrypted connections to the OMERO server.
13:04:49#
13:04:49# Additionally, there are two experimental values for using websockets:
13:04:49# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
13:04:49# that are opened are controlled by the omero.ports.ws and omero.ports.wss
13:04:49# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
13:04:49#
13:04:49# Note: When using websockets behind a web server like nginx, additional
13:04:49# configuration may be needed.
13:04:49omero.client.icetransports=ssl,tcp
13:04:4913:04:49# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
13:04:49# server
13:04:49omero.ports.prefix=
13:04:4913:04:49# The Glacier2 SSL port number to use
13:04:49omero.ports.ssl=4064
13:04:4913:04:49# The Glacier2 TCP port number to use (unencrypted)
13:04:49omero.ports.tcp=4063
13:04:4913:04:49# The Glacier2 WSS port number to use
13:04:49omero.ports.wss=4066
13:04:4913:04:49# The Glacier2 WS port number to use (unencrypted)
13:04:49omero.ports.ws=4065
13:04:4913:04:49# The IceGrid registry port number to use
13:04:49omero.ports.registry=4061
13:04:4913:04:49#############################################
13:04:49## JVM configuration
13:04:49##
13:04:49## Note: changes to the omero.jvmcfg properties
13:04:49## will *not* be reflected in OMERO.server
13:04:49## since they are defined in OMERO.py.
13:04:49#############################################
13:04:49## (For documentation only)
13:04:49# Memory strategy which will be used by default.
13:04:49# Options include: percent, manual
13:04:49omero.jvmcfg.strategy=percent
13:04:4913:04:49## (For documentation only)
13:04:49# Explicit value for the `-Xmx` argument, e.g.
13:04:49# "1g"
13:04:49omero.jvmcfg.heap_size=
13:04:4913:04:49## (For documentation only)
13:04:49# Explicit value for the MaxPermSize argument
13:04:49# to the JVM, e.g. "500M". Ignored for Java8+
13:04:49omero.jvmcfg.perm_gen=
13:04:4913:04:49## (For documentation only)
13:04:49# Toggles on or off heap dumps on OOMs. Default is "off".
13:04:49# The special value "tmp" will create the heap dumps in
13:04:49# your temp directory.
13:04:49omero.jvmcfg.heap_dump=
13:04:4913:04:49## (For documentation only)
13:04:49# Used only by the percent strategy. An integer between 0
13:04:49# and 100 which is the percent of active memory that will
13:04:49# be used by the service.
13:04:49omero.jvmcfg.percent=
13:04:4913:04:49## (For documentation only)
13:04:49# Contains other parameters which should be passed to the
13:04:49# JVM. The value of "append" is treated as if it were on
13:04:49# the command line so will be separated on whitespace.
13:04:49# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
13:04:49# results in two new arguments.
13:04:49# Note that when using `config set` from the command line
13:04:49# one may need to give a prior `--` option to prevent a value
13:04:49# starting with `-` from already being parsed as an option,
13:04:49# and values may need quoting to prevent whitespace or other
13:04:49# significant characters from being interpreted prematurely.
13:04:4913:04:49omero.jvmcfg.append=
13:04:4913:04:49## (For documentation only)
13:04:49# Manual override of the total system memory that
13:04:49# OMERO will *think* is present on the local OS (MB).
13:04:49# If unset, an attempt will be made to detect the actual
13:04:49# amount: first by using the Python library `psutil` and
13:04:49# if that is not installed, by running a Java tool. If
13:04:49# neither works, 4.0GB is assumed.
13:04:49omero.jvmcfg.system_memory=
13:04:4913:04:49## (For documentation only)
13:04:49# Suggestion for strategies as to the minimum memory
13:04:49# that they will use for calculating JVM settings (MB).
13:04:49omero.jvmcfg.min_system_memory=3414
13:04:4913:04:49## (For documentation only)
13:04:49# Suggestion for strategies as to the maximum memory
13:04:49# that they will use for calculating JVM settings (MB).
13:04:49omero.jvmcfg.max_system_memory=48000
13:04:4913:04:4913:04:49#############################################
13:04:49## Logging properties
13:04:49##
13:04:49## Note: changes to the default omero.logging values in
13:04:49## this file will *not* be reflected in OMERO.server
13:04:49## since they are defined in OMERO.py
13:04:49#############################################
13:04:4913:04:49## (For documentation only)
13:04:49# Relative server directory where the log files should be stored.
13:04:49omero.logging.directory=var/log/
13:04:4913:04:49## (For documentation only)
13:04:49# Whether the server log files should be rotated at a certain time
13:04:49# interval. If true, log files will be rolled over at midnight.
13:04:49# Otherwise, log files will be rolled over at a predetermined size,
13:04:49# see omero.logging.logsize for more information.
13:04:49omero.logging.timedlog=false
13:04:4913:04:49## (For documentation only)
13:04:49# If omero.logging.timedlog is false or unset, specifies the
13:04:49# maximum size of the server log files in bytes above which a
13:04:49# new log file should be created.
13:04:49omero.logging.logsize=5000000
13:04:4913:04:49## (For documentation only)
13:04:49# If omero.logging.timedlog is false or unset, specifies the
13:04:49# number of old server log files that should be kept. Old log
13:04:49# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
13:04:49omero.logging.lognum=9
13:04:4913:04:49## (For documentation only)
13:04:49# Specifies the threshold for the Python servers log files. Logging messages
13:04:49# which are less severe than this value will be ignored. For a list of
13:04:49# available values, see https://docs.python.org/3/library/logging.html#levels.
13:04:49omero.logging.level=20
13:04:4913:04:49#############################################
13:04:49## Ice overrides
13:04:49##
13:04:49## Though not used directly by OMERO, a number
13:04:49## of properties prefixed with "Ice.*" will
13:04:49## alter the behavior of the OMERO runtime
13:04:49## by configuring the Ice communicators. For a
13:04:49## full listing see:
13:04:49##
13:04:49## http://doc.zeroc.com/display/Ice/Property+Reference13:04:49## For more information see
13:04:49## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start13:04:49#############################################
13:04:4913:04:49# Disable IPv6 by setting to 0. Only needed in
13:04:49# certain situations.
13:04:49Ice.IPv6=1
13:04:4913:04:49# Glacier2Template IceSSL defaults and overrides,
13:04:49# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
13:04:49# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
13:04:49# update the corresponding IceSSL. property.
13:04:49omero.glacier2.IceSSL=
13:04:4913:04:49# Glacier2Template SSL maximum allowed protocol (mac bug)
13:04:49omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
13:04:49# Glacier2Template SSL allowed cipher suites
13:04:49omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
13:04:49# Glacier2Template SSL verification requirements
13:04:49omero.glacier2.IceSSL.VerifyPeer=0
13:04:49# Glacier2Template SSL allowed protocols
13:04:49omero.glacier2.IceSSL.Protocols=tls1
13:04:4913:04:49# Override the default set of OMERO services.
13:04:49# For example, to run OMERO.server with Blitz and Tables only
13:04:49# (i.e. disable Processor, DropBox, Indexer, PixelData)
13:04:49# set this to ``master:Blitz-0,Tables-0``.
13:04:49# Also use this to distribute OMERO services across multiple nodes,
13:04:49# for example:
13:04:49# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
13:04:49# See
13:04:49# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples13:04:49omero.server.nodedescriptors=
13:04:4913:04:49#############################################
13:04:49## Darwin (OS X) specific defaults for templated configuration files only.
13:04:49## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
13:04:49## file.
13:04:49## Do not set these properties in ``omero config``, instead set the original
13:04:49## ``xxx.yyy`` property
13:04:49#############################################
13:04:49_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
13:04:4913:04:49## (For documentation only)
13:04:49# Name of the Python module to use when starting the Tables service
13:04:49omero.tables.module=runTables
13:04:4913:04:49#############################################
13:04:49## Server product name for release artifacts
13:04:49#############################################
13:04:49product.name=OMERO.server
13:04:4913:04:49#############################################
13:04:49### Properties below this marker are ignored by
13:04:49### omero.install.config_parser.PropertyParser
13:04:49### END
13:04:4913:04:49#############################################
13:04:49## Library versions
13:04:49#############################################
13:04:49##
13:04:49versions.findbugs=1.2.1
13:04:49versions.ice36=3.6.5
13:04:49versions.ice36_lib=36
13:04:49## internal
13:04:49versions.omeroshares36=3.6.3
13:04:49versions.omeromock36=3.6.3
13:04:49versions.icedb36=3.6.3
13:04:49versions.ipython=1.2.1
13:04:4913:04:49versions.janino=2.5.10
13:04:4913:04:49versions.reportng=1.1.1
13:04:4913:04:49versions.testng=7.5
13:04:49versions.velocity=1.4
13:04:4913:04:49versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE13:04:49versions.omero-scripts-url=${versions.omero-pypi}
13:04:4913:04:49###
13:04:49### Appended Values
13:04:49###
13:04:4913:04:49## Internal dependencies'
13:04:49+ echo '##
13:04:49## omero.properties
13:04:49## ----------------
13:04:49##
13:04:49## DO NOT EDIT!
13:04:49##
13:04:49##
13:04:49## Any of these properties can be altered by using `omero config`. MODIFYING
13:04:49## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
13:04:49## at compile time!
13:04:49##
13:04:49## For an overview of these properties, see
13:04:49## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html13:04:49##
13:04:49## Properties marked with "DEVELOPMENT" should not be used in production.
13:04:4913:04:49# Comma separated list of Ice transports available to clients. The default
13:04:49# value ("ssl,tcp") instructs Ice to open the ports specified by the
13:04:49# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
13:04:49# will prevent all non-encrypted connections to the OMERO server.
13:04:49#
13:04:49# Additionally, there are two experimental values for using websockets:
13:04:49# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
13:04:49# that are opened are controlled by the omero.ports.ws and omero.ports.wss
13:04:49# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
13:04:49#
13:04:49# Note: When using websockets behind a web server like nginx, additional
13:04:49# configuration may be needed.
13:04:49omero.client.icetransports=ssl,tcp
13:04:4913:04:49# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
13:04:49# server
13:04:49omero.ports.prefix=
13:04:4913:04:49# The Glacier2 SSL port number to use
13:04:49omero.ports.ssl=4064
13:04:4913:04:49# The Glacier2 TCP port number to use (unencrypted)
13:04:49omero.ports.tcp=4063
13:04:4913:04:49# The Glacier2 WSS port number to use
13:04:49omero.ports.wss=4066
13:04:4913:04:49# The Glacier2 WS port number to use (unencrypted)
13:04:49omero.ports.ws=4065
13:04:4913:04:49# The IceGrid registry port number to use
13:04:49omero.ports.registry=4061
13:04:4913:04:49#############################################
13:04:49## JVM configuration
13:04:49##
13:04:49## Note: changes to the omero.jvmcfg properties
13:04:49## will *not* be reflected in OMERO.server
13:04:49## since they are defined in OMERO.py.
13:04:49#############################################
13:04:49## (For documentation only)
13:04:49# Memory strategy which will be used by default.
13:04:49# Options include: percent, manual
13:04:49omero.jvmcfg.strategy=percent
13:04:4913:04:49## (For documentation only)
13:04:49# Explicit value for the `-Xmx` argument, e.g.
13:04:49# "1g"
13:04:49omero.jvmcfg.heap_size=
13:04:4913:04:49## (For documentation only)
13:04:49# Explicit value for the MaxPermSize argument
13:04:49# to the JVM, e.g. "500M". Ignored for Java8+
13:04:49omero.jvmcfg.perm_gen=
13:04:4913:04:49## (For documentation only)
13:04:49# Toggles on or off heap dumps on OOMs. Default is "off".
13:04:49# The special value "tmp" will create the heap dumps in
13:04:49# your temp directory.
13:04:49omero.jvmcfg.heap_dump=
13:04:4913:04:49## (For documentation only)
13:04:49# Used only by the percent strategy. An integer between 0
13:04:49# and 100 which is the percent of active memory that will
13:04:49# be used by the service.
13:04:49omero.jvmcfg.percent=
13:04:4913:04:49## (For documentation only)
13:04:49# Contains other parameters which should be passed to the
13:04:49# JVM. The value of "append" is treated as if it were on
13:04:49# the command line so will be separated on whitespace.
13:04:49# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
13:04:49# results in two new arguments.
13:04:49# Note that when using `config set` from the command line
13:04:49# one may need to give a prior `--` option to prevent a value
13:04:49# starting with `-` from already being parsed as an option,
13:04:49# and values may need quoting to prevent whitespace or other
13:04:49# significant characters from being interpreted prematurely.
13:04:4913:04:49omero.jvmcfg.append=
13:04:4913:04:49## (For documentation only)
13:04:49# Manual override of the total system memory that
13:04:49# OMERO will *think* is present on the local OS (MB).
13:04:49# If unset, an attempt will be made to detect the actual
13:04:49# amount: first by using the Python library `psutil` and
13:04:49# if that is not installed, by running a Java tool. If
13:04:49# neither works, 4.0GB is assumed.
13:04:49omero.jvmcfg.system_memory=
13:04:4913:04:49## (For documentation only)
13:04:49# Suggestion for strategies as to the minimum memory
13:04:49# that they will use for calculating JVM settings (MB).
13:04:49omero.jvmcfg.min_system_memory=3414
13:04:4913:04:49## (For documentation only)
13:04:49# Suggestion for strategies as to the maximum memory
13:04:49# that they will use for calculating JVM settings (MB).
13:04:49omero.jvmcfg.max_system_memory=48000
13:04:4913:04:4913:04:49#############################################
13:04:49## Logging properties
13:04:49##
13:04:49## Note: changes to the default omero.logging values in
13:04:49## this file will *not* be reflected in OMERO.server
13:04:49## since they are defined in OMERO.py
13:04:49#############################################
13:04:4913:04:49## (For documentation only)
13:04:49# Relative server directory where the log files should be stored.
13:04:49omero.logging.directory=var/log/
13:04:4913:04:49## (For documentation only)
13:04:49# Whether the server log files should be rotated at a certain time
13:04:49# interval. If true, log files will be rolled over at midnight.
13:04:49# Otherwise, log files will be rolled over at a predetermined size,
13:04:49# see omero.logging.logsize for more information.
13:04:49omero.logging.timedlog=false
13:04:4913:04:49## (For documentation only)
13:04:49# If omero.logging.timedlog is false or unset, specifies the
13:04:49# maximum size of the server log files in bytes above which a
13:04:49# new log file should be created.
13:04:49omero.logging.logsize=5000000
13:04:4913:04:49## (For documentation only)
13:04:49# If omero.logging.timedlog is false or unset, specifies the
13:04:49# number of old server log files that should be kept. Old log
13:04:49# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
13:04:49omero.logging.lognum=9
13:04:4913:04:49## (For documentation only)
13:04:49# Specifies the threshold for the Python servers log files. Logging messages
13:04:49# which are less severe than this value will be ignored. For a list of
13:04:49# available values, see https://docs.python.org/3/library/logging.html#levels.
13:04:49omero.logging.level=20
13:04:4913:04:49#############################################
13:04:49## Ice overrides
13:04:49##
13:04:49## Though not used directly by OMERO, a number
13:04:49## of properties prefixed with "Ice.*" will
13:04:49## alter the behavior of the OMERO runtime
13:04:49## by configuring the Ice communicators. For a
13:04:49## full listing see:
13:04:49##
13:04:49## http://doc.zeroc.com/display/Ice/Property+Reference13:04:49## For more information see
13:04:49## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start13:04:49#############################################
13:04:4913:04:49# Disable IPv6 by setting to 0. Only needed in
13:04:49# certain situations.
13:04:49Ice.IPv6=1
13:04:4913:04:49# Glacier2Template IceSSL defaults and overrides,
13:04:49# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
13:04:49# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
13:04:49# update the corresponding IceSSL. property.
13:04:49omero.glacier2.IceSSL=
13:04:4913:04:49# Glacier2Template SSL maximum allowed protocol (mac bug)
13:04:49omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
13:04:49# Glacier2Template SSL allowed cipher suites
13:04:49omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
13:04:49# Glacier2Template SSL verification requirements
13:04:49omero.glacier2.IceSSL.VerifyPeer=0
13:04:49# Glacier2Template SSL allowed protocols
13:04:49omero.glacier2.IceSSL.Protocols=tls1
13:04:4913:04:49# Override the default set of OMERO services.
13:04:49# For example, to run OMERO.server with Blitz and Tables only
13:04:49# (i.e. disable Processor, DropBox, Indexer, PixelData)
13:04:49# set this to ``master:Blitz-0,Tables-0``.
13:04:49# Also use this to distribute OMERO services across multiple nodes,
13:04:49# for example:
13:04:49# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
13:04:49# See
13:04:49# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples13:04:49omero.server.nodedescriptors=
13:04:4913:04:49#############################################
13:04:49## Darwin (OS X) specific defaults for templated configuration files only.
13:04:49## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
13:04:49## file.
13:04:49## Do not set these properties in ``omero config``, instead set the original
13:04:49## ``xxx.yyy`` property
13:04:49#############################################
13:04:49_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
13:04:4913:04:49## (For documentation only)
13:04:49# Name of the Python module to use when starting the Tables service
13:04:49omero.tables.module=runTables
13:04:4913:04:49#############################################
13:04:49## Server product name for release artifacts
13:04:49#############################################
13:04:49product.name=OMERO.server
13:04:4913:04:49#############################################
13:04:49### Properties below this marker are ignored by
13:04:49### omero.install.config_parser.PropertyParser
13:04:49### END
13:04:4913:04:49#############################################
13:04:49## Library versions
13:04:49#############################################
13:04:49##
13:04:49versions.findbugs=1.2.1
13:04:49versions.ice36=3.6.5
13:04:49versions.ice36_lib=36
13:04:49## internal
13:04:49versions.omeroshares36=3.6.3
13:04:49versions.omeromock36=3.6.3
13:04:49versions.icedb36=3.6.3
13:04:49versions.ipython=1.2.1
13:04:4913:04:49versions.janino=2.5.10
13:04:4913:04:49versions.reportng=1.1.1
13:04:4913:04:49versions.testng=7.5
13:04:49versions.velocity=1.4
13:04:4913:04:49versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE13:04:49versions.omero-scripts-url=${versions.omero-pypi}
13:04:4913:04:49###
13:04:49### Appended Values
13:04:49###
13:04:4913:04:49## Internal dependencies'
13:04:49+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/13:04:49+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive13:04:49+ echo versions.scripts-prefix=
13:04:49+ echo versions.scripts=merge_ci
13:04:49+ cat /home/omero/workspace/OMERO-push/version.properties
13:04:49+ git commit -a -m 'Add version.properties to etc/omero.properties'
13:04:49[detached HEAD ec16e0d4cd] Add version.properties to etc/omero.properties
13:04:49 1 file changed, 47 insertions(+), 7 deletions(-)
13:04:49+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
13:04:51To github.com:snoopycrimecop/openmicroscopy.git
13:04:51 + 6e4e8b4411...ec16e0d4cd HEAD -> merge_ci (forced update)
13:04:51Finished: SUCCESS
![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
