09:48:59Started by upstream project "Trigger" build number 2309:48:59originally caused by:
09:48:59 Started by user devspace09:48:59Running as SYSTEM
09:48:59Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
09:48:59The recommended git tool is: NONE
09:48:59No credentials specified
09:48:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
09:48:59Fetching changes from the remote Git repository
09:48:59 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
09:48:59Fetching upstream changes from https://github.com/ome/openmicroscopy.git09:48:59 > git --version # timeout=10
09:48:59 > git --version # 'git version 2.52.0'
09:48:59 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:49:04 > git rev-parse origin/develop^{commit} # timeout=10
09:49:04Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop)
09:49:04 > git config core.sparsecheckout # timeout=10
09:49:04 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30
09:49:08Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test"
09:49:08 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10
09:49:08Cleaning workspace
09:49:08 > git rev-parse --verify HEAD # timeout=10
09:49:08Resetting working tree
09:49:08 > git reset --hard # timeout=10
09:49:08 > git clean -fdx # timeout=10
09:49:08Copied 1 artifact from "OMERO-python-superbuild-build" build number 1309:49:08[OMERO-push] $ /bin/bash -xe /tmp/jenkins2677742967550858802.sh
09:49:08+ python3.11 -mvenv venv
09:49:11+ source /home/omero/workspace/OMERO-push/venv/bin/activate
09:49:11++ deactivate nondestructive
09:49:11++ '[' -n '' ']'
09:49:11++ '[' -n '' ']'
09:49:11++ hash -r
09:49:11++ '[' -n '' ']'
09:49:11++ unset VIRTUAL_ENV
09:49:11++ unset VIRTUAL_ENV_PROMPT
09:49:11++ '[' '!' nondestructive = nondestructive ']'
09:49:11++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
09:49:11++ export VIRTUAL_ENV
09:49:11++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:49:11++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:49:11++ export PATH
09:49:11++ '[' -n '' ']'
09:49:11++ '[' -z '' ']'
09:49:11++ _OLD_VIRTUAL_PS1=
09:49:11++ PS1='(venv) '
09:49:11++ export PS1
09:49:11++ VIRTUAL_ENV_PROMPT='(venv) '
09:49:11++ export VIRTUAL_ENV_PROMPT
09:49:11++ hash -r
09:49:11+ pip install -U pip
09:49:14Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
09:49:15+ pip install -U scc
09:49:15Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
09:49:15Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
09:49:15Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
09:49:15Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
09:49:15Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
09:49:15Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
09:49:15Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
09:49:15Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
09:49:15Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
09:49:15Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
09:49:15Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
09:49:15Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
09:49:15Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
09:49:15Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
09:49:15Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
09:49:15Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
09:49:16Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
09:49:16Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
09:49:16Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
09:49:16+ test -e src
09:49:16+ cd src
09:49:16++ git config github.user
09:49:16+ user=snoopycrimecop
09:49:16+ scc merge develop --no-ask --reset --shallow -S success-only
09:49:242026-07-20 09:49:24,177 [ scc.merge] INFO Merging Pull Request(s) based on develop
09:49:242026-07-20 09:49:24,177 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
09:49:242026-07-20 09:49:24,177 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
09:49:242026-07-20 09:49:24,177 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
09:49:242026-07-20 09:49:24,177 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
09:49:242026-07-20 09:49:24,177 [ scc.merge] INFO Excluding Pull Request(s) without successful status
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO Repository: ome/openmicroscopy
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO Excluded PRs:
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6467 pwalczysko 'Test thumbs' (label: exclude)
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure)
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (label: exclude)
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO Already up to date.
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO Merged PRs:
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6465 pwalczysko 'Fix also the test_remove__pre_fs_pyramids'
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO - PR 6466 pwalczysko 'Fix test_remove_pyramids_check_thumbs NFS'
09:49:572026-07-20 09:49:57,553 [ scc.merge] INFO
09:49:57+ cp etc/omero.properties etc/omero.properties.bak
09:49:57+ rm etc/omero.properties
09:49:57+ touch etc/omero.properties
09:49:57++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
09:49:57+ ne=249
09:49:57++ sed -n 1,249p etc/omero.properties.bak
09:49:57+ line='##
09:49:57## omero.properties
09:49:57## ----------------
09:49:57##
09:49:57## DO NOT EDIT!
09:49:57##
09:49:57##
09:49:57## Any of these properties can be altered by using `omero config`. MODIFYING
09:49:57## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
09:49:57## at compile time!
09:49:57##
09:49:57## For an overview of these properties, see
09:49:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html09:49:57##
09:49:57## Properties marked with "DEVELOPMENT" should not be used in production.
09:49:5709:49:57# Comma separated list of Ice transports available to clients. The default
09:49:57# value ("ssl,tcp") instructs Ice to open the ports specified by the
09:49:57# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
09:49:57# will prevent all non-encrypted connections to the OMERO server.
09:49:57#
09:49:57# Additionally, there are two experimental values for using websockets:
09:49:57# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
09:49:57# that are opened are controlled by the omero.ports.ws and omero.ports.wss
09:49:57# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
09:49:57#
09:49:57# Note: When using websockets behind a web server like nginx, additional
09:49:57# configuration may be needed.
09:49:57omero.client.icetransports=ssl,tcp
09:49:5709:49:57# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
09:49:57# server
09:49:57omero.ports.prefix=
09:49:5709:49:57# The Glacier2 SSL port number to use
09:49:57omero.ports.ssl=4064
09:49:5709:49:57# The Glacier2 TCP port number to use (unencrypted)
09:49:57omero.ports.tcp=4063
09:49:5709:49:57# The Glacier2 WSS port number to use
09:49:57omero.ports.wss=4066
09:49:5709:49:57# The Glacier2 WS port number to use (unencrypted)
09:49:57omero.ports.ws=4065
09:49:5709:49:57# The IceGrid registry port number to use
09:49:57omero.ports.registry=4061
09:49:5709:49:57#############################################
09:49:57## JVM configuration
09:49:57##
09:49:57## Note: changes to the omero.jvmcfg properties
09:49:57## will *not* be reflected in OMERO.server
09:49:57## since they are defined in OMERO.py.
09:49:57#############################################
09:49:57## (For documentation only)
09:49:57# Memory strategy which will be used by default.
09:49:57# Options include: percent, manual
09:49:57omero.jvmcfg.strategy=percent
09:49:5709:49:57## (For documentation only)
09:49:57# Explicit value for the `-Xmx` argument, e.g.
09:49:57# "1g"
09:49:57omero.jvmcfg.heap_size=
09:49:5709:49:57## (For documentation only)
09:49:57# Explicit value for the MaxPermSize argument
09:49:57# to the JVM, e.g. "500M". Ignored for Java8+
09:49:57omero.jvmcfg.perm_gen=
09:49:5709:49:57## (For documentation only)
09:49:57# Toggles on or off heap dumps on OOMs. Default is "off".
09:49:57# The special value "tmp" will create the heap dumps in
09:49:57# your temp directory.
09:49:57omero.jvmcfg.heap_dump=
09:49:5709:49:57## (For documentation only)
09:49:57# Used only by the percent strategy. An integer between 0
09:49:57# and 100 which is the percent of active memory that will
09:49:57# be used by the service.
09:49:57omero.jvmcfg.percent=
09:49:5709:49:57## (For documentation only)
09:49:57# Contains other parameters which should be passed to the
09:49:57# JVM. The value of "append" is treated as if it were on
09:49:57# the command line so will be separated on whitespace.
09:49:57# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
09:49:57# results in two new arguments.
09:49:57# Note that when using `config set` from the command line
09:49:57# one may need to give a prior `--` option to prevent a value
09:49:57# starting with `-` from already being parsed as an option,
09:49:57# and values may need quoting to prevent whitespace or other
09:49:57# significant characters from being interpreted prematurely.
09:49:5709:49:57omero.jvmcfg.append=
09:49:5709:49:57## (For documentation only)
09:49:57# Manual override of the total system memory that
09:49:57# OMERO will *think* is present on the local OS (MB).
09:49:57# If unset, an attempt will be made to detect the actual
09:49:57# amount: first by using the Python library `psutil` and
09:49:57# if that is not installed, by running a Java tool. If
09:49:57# neither works, 4.0GB is assumed.
09:49:57omero.jvmcfg.system_memory=
09:49:5709:49:57## (For documentation only)
09:49:57# Suggestion for strategies as to the minimum memory
09:49:57# that they will use for calculating JVM settings (MB).
09:49:57omero.jvmcfg.min_system_memory=3414
09:49:5709:49:57## (For documentation only)
09:49:57# Suggestion for strategies as to the maximum memory
09:49:57# that they will use for calculating JVM settings (MB).
09:49:57omero.jvmcfg.max_system_memory=48000
09:49:5709:49:5709:49:57#############################################
09:49:57## Logging properties
09:49:57##
09:49:57## Note: changes to the default omero.logging values in
09:49:57## this file will *not* be reflected in OMERO.server
09:49:57## since they are defined in OMERO.py
09:49:57#############################################
09:49:5709:49:57## (For documentation only)
09:49:57# Relative server directory where the log files should be stored.
09:49:57omero.logging.directory=var/log/
09:49:5709:49:57## (For documentation only)
09:49:57# Whether the server log files should be rotated at a certain time
09:49:57# interval. If true, log files will be rolled over at midnight.
09:49:57# Otherwise, log files will be rolled over at a predetermined size,
09:49:57# see omero.logging.logsize for more information.
09:49:57omero.logging.timedlog=false
09:49:5709:49:57## (For documentation only)
09:49:57# If omero.logging.timedlog is false or unset, specifies the
09:49:57# maximum size of the server log files in bytes above which a
09:49:57# new log file should be created.
09:49:57omero.logging.logsize=5000000
09:49:5709:49:57## (For documentation only)
09:49:57# If omero.logging.timedlog is false or unset, specifies the
09:49:57# number of old server log files that should be kept. Old log
09:49:57# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
09:49:57omero.logging.lognum=9
09:49:5709:49:57## (For documentation only)
09:49:57# Specifies the threshold for the Python servers log files. Logging messages
09:49:57# which are less severe than this value will be ignored. For a list of
09:49:57# available values, see https://docs.python.org/3/library/logging.html#levels.
09:49:57omero.logging.level=20
09:49:5709:49:57#############################################
09:49:57## Ice overrides
09:49:57##
09:49:57## Though not used directly by OMERO, a number
09:49:57## of properties prefixed with "Ice.*" will
09:49:57## alter the behavior of the OMERO runtime
09:49:57## by configuring the Ice communicators. For a
09:49:57## full listing see:
09:49:57##
09:49:57## http://doc.zeroc.com/display/Ice/Property+Reference09:49:57## For more information see
09:49:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start09:49:57#############################################
09:49:5709:49:57# Disable IPv6 by setting to 0. Only needed in
09:49:57# certain situations.
09:49:57Ice.IPv6=1
09:49:5709:49:57# Glacier2Template IceSSL defaults and overrides,
09:49:57# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
09:49:57# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
09:49:57# update the corresponding IceSSL. property.
09:49:57omero.glacier2.IceSSL=
09:49:5709:49:57# Glacier2Template SSL maximum allowed protocol (mac bug)
09:49:57omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
09:49:57# Glacier2Template SSL allowed cipher suites
09:49:57omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
09:49:57# Glacier2Template SSL verification requirements
09:49:57omero.glacier2.IceSSL.VerifyPeer=0
09:49:57# Glacier2Template SSL allowed protocols
09:49:57omero.glacier2.IceSSL.Protocols=tls1
09:49:5709:49:57# Override the default set of OMERO services.
09:49:57# For example, to run OMERO.server with Blitz and Tables only
09:49:57# (i.e. disable Processor, DropBox, Indexer, PixelData)
09:49:57# set this to ``master:Blitz-0,Tables-0``.
09:49:57# Also use this to distribute OMERO services across multiple nodes,
09:49:57# for example:
09:49:57# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
09:49:57# See
09:49:57# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples09:49:57omero.server.nodedescriptors=
09:49:5709:49:57#############################################
09:49:57## Darwin (OS X) specific defaults for templated configuration files only.
09:49:57## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
09:49:57## file.
09:49:57## Do not set these properties in ``omero config``, instead set the original
09:49:57## ``xxx.yyy`` property
09:49:57#############################################
09:49:57_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
09:49:5709:49:57## (For documentation only)
09:49:57# Name of the Python module to use when starting the Tables service
09:49:57omero.tables.module=runTables
09:49:5709:49:57#############################################
09:49:57## Server product name for release artifacts
09:49:57#############################################
09:49:57product.name=OMERO.server
09:49:5709:49:57#############################################
09:49:57### Properties below this marker are ignored by
09:49:57### omero.install.config_parser.PropertyParser
09:49:57### END
09:49:5709:49:57#############################################
09:49:57## Library versions
09:49:57#############################################
09:49:57##
09:49:57versions.findbugs=1.2.1
09:49:57versions.ice36=3.6.5
09:49:57versions.ice36_lib=36
09:49:57## internal
09:49:57versions.omeroshares36=3.6.3
09:49:57versions.omeromock36=3.6.3
09:49:57versions.icedb36=3.6.3
09:49:57versions.ipython=1.2.1
09:49:5709:49:57versions.janino=2.5.10
09:49:5709:49:57versions.reportng=1.1.1
09:49:5709:49:57versions.testng=7.5
09:49:57versions.velocity=1.4
09:49:5709:49:57versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE09:49:57versions.omero-scripts-url=${versions.omero-pypi}
09:49:5709:49:57###
09:49:57### Appended Values
09:49:57###
09:49:5709:49:57## Internal dependencies'
09:49:57+ echo '##
09:49:57## omero.properties
09:49:57## ----------------
09:49:57##
09:49:57## DO NOT EDIT!
09:49:57##
09:49:57##
09:49:57## Any of these properties can be altered by using `omero config`. MODIFYING
09:49:57## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
09:49:57## at compile time!
09:49:57##
09:49:57## For an overview of these properties, see
09:49:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html09:49:57##
09:49:57## Properties marked with "DEVELOPMENT" should not be used in production.
09:49:5709:49:57# Comma separated list of Ice transports available to clients. The default
09:49:57# value ("ssl,tcp") instructs Ice to open the ports specified by the
09:49:57# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
09:49:57# will prevent all non-encrypted connections to the OMERO server.
09:49:57#
09:49:57# Additionally, there are two experimental values for using websockets:
09:49:57# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
09:49:57# that are opened are controlled by the omero.ports.ws and omero.ports.wss
09:49:57# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
09:49:57#
09:49:57# Note: When using websockets behind a web server like nginx, additional
09:49:57# configuration may be needed.
09:49:57omero.client.icetransports=ssl,tcp
09:49:5709:49:57# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
09:49:57# server
09:49:57omero.ports.prefix=
09:49:5709:49:57# The Glacier2 SSL port number to use
09:49:57omero.ports.ssl=4064
09:49:5709:49:57# The Glacier2 TCP port number to use (unencrypted)
09:49:57omero.ports.tcp=4063
09:49:5709:49:57# The Glacier2 WSS port number to use
09:49:57omero.ports.wss=4066
09:49:5709:49:57# The Glacier2 WS port number to use (unencrypted)
09:49:57omero.ports.ws=4065
09:49:5709:49:57# The IceGrid registry port number to use
09:49:57omero.ports.registry=4061
09:49:5709:49:57#############################################
09:49:57## JVM configuration
09:49:57##
09:49:57## Note: changes to the omero.jvmcfg properties
09:49:57## will *not* be reflected in OMERO.server
09:49:57## since they are defined in OMERO.py.
09:49:57#############################################
09:49:57## (For documentation only)
09:49:57# Memory strategy which will be used by default.
09:49:57# Options include: percent, manual
09:49:57omero.jvmcfg.strategy=percent
09:49:5709:49:57## (For documentation only)
09:49:57# Explicit value for the `-Xmx` argument, e.g.
09:49:57# "1g"
09:49:57omero.jvmcfg.heap_size=
09:49:5709:49:57## (For documentation only)
09:49:57# Explicit value for the MaxPermSize argument
09:49:57# to the JVM, e.g. "500M". Ignored for Java8+
09:49:57omero.jvmcfg.perm_gen=
09:49:5709:49:57## (For documentation only)
09:49:57# Toggles on or off heap dumps on OOMs. Default is "off".
09:49:57# The special value "tmp" will create the heap dumps in
09:49:57# your temp directory.
09:49:57omero.jvmcfg.heap_dump=
09:49:5709:49:57## (For documentation only)
09:49:57# Used only by the percent strategy. An integer between 0
09:49:57# and 100 which is the percent of active memory that will
09:49:57# be used by the service.
09:49:57omero.jvmcfg.percent=
09:49:5709:49:57## (For documentation only)
09:49:57# Contains other parameters which should be passed to the
09:49:57# JVM. The value of "append" is treated as if it were on
09:49:57# the command line so will be separated on whitespace.
09:49:57# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
09:49:57# results in two new arguments.
09:49:57# Note that when using `config set` from the command line
09:49:57# one may need to give a prior `--` option to prevent a value
09:49:57# starting with `-` from already being parsed as an option,
09:49:57# and values may need quoting to prevent whitespace or other
09:49:57# significant characters from being interpreted prematurely.
09:49:5709:49:57omero.jvmcfg.append=
09:49:5709:49:57## (For documentation only)
09:49:57# Manual override of the total system memory that
09:49:57# OMERO will *think* is present on the local OS (MB).
09:49:57# If unset, an attempt will be made to detect the actual
09:49:57# amount: first by using the Python library `psutil` and
09:49:57# if that is not installed, by running a Java tool. If
09:49:57# neither works, 4.0GB is assumed.
09:49:57omero.jvmcfg.system_memory=
09:49:5709:49:57## (For documentation only)
09:49:57# Suggestion for strategies as to the minimum memory
09:49:57# that they will use for calculating JVM settings (MB).
09:49:57omero.jvmcfg.min_system_memory=3414
09:49:5709:49:57## (For documentation only)
09:49:57# Suggestion for strategies as to the maximum memory
09:49:57# that they will use for calculating JVM settings (MB).
09:49:57omero.jvmcfg.max_system_memory=48000
09:49:5709:49:5709:49:57#############################################
09:49:57## Logging properties
09:49:57##
09:49:57## Note: changes to the default omero.logging values in
09:49:57## this file will *not* be reflected in OMERO.server
09:49:57## since they are defined in OMERO.py
09:49:57#############################################
09:49:5709:49:57## (For documentation only)
09:49:57# Relative server directory where the log files should be stored.
09:49:57omero.logging.directory=var/log/
09:49:5709:49:57## (For documentation only)
09:49:57# Whether the server log files should be rotated at a certain time
09:49:57# interval. If true, log files will be rolled over at midnight.
09:49:57# Otherwise, log files will be rolled over at a predetermined size,
09:49:57# see omero.logging.logsize for more information.
09:49:57omero.logging.timedlog=false
09:49:5709:49:57## (For documentation only)
09:49:57# If omero.logging.timedlog is false or unset, specifies the
09:49:57# maximum size of the server log files in bytes above which a
09:49:57# new log file should be created.
09:49:57omero.logging.logsize=5000000
09:49:5709:49:57## (For documentation only)
09:49:57# If omero.logging.timedlog is false or unset, specifies the
09:49:57# number of old server log files that should be kept. Old log
09:49:57# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
09:49:57omero.logging.lognum=9
09:49:5709:49:57## (For documentation only)
09:49:57# Specifies the threshold for the Python servers log files. Logging messages
09:49:57# which are less severe than this value will be ignored. For a list of
09:49:57# available values, see https://docs.python.org/3/library/logging.html#levels.
09:49:57omero.logging.level=20
09:49:5709:49:57#############################################
09:49:57## Ice overrides
09:49:57##
09:49:57## Though not used directly by OMERO, a number
09:49:57## of properties prefixed with "Ice.*" will
09:49:57## alter the behavior of the OMERO runtime
09:49:57## by configuring the Ice communicators. For a
09:49:57## full listing see:
09:49:57##
09:49:57## http://doc.zeroc.com/display/Ice/Property+Reference09:49:57## For more information see
09:49:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start09:49:57#############################################
09:49:5709:49:57# Disable IPv6 by setting to 0. Only needed in
09:49:57# certain situations.
09:49:57Ice.IPv6=1
09:49:5709:49:57# Glacier2Template IceSSL defaults and overrides,
09:49:57# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
09:49:57# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
09:49:57# update the corresponding IceSSL. property.
09:49:57omero.glacier2.IceSSL=
09:49:5709:49:57# Glacier2Template SSL maximum allowed protocol (mac bug)
09:49:57omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
09:49:57# Glacier2Template SSL allowed cipher suites
09:49:57omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
09:49:57# Glacier2Template SSL verification requirements
09:49:57omero.glacier2.IceSSL.VerifyPeer=0
09:49:57# Glacier2Template SSL allowed protocols
09:49:57omero.glacier2.IceSSL.Protocols=tls1
09:49:5709:49:57# Override the default set of OMERO services.
09:49:57# For example, to run OMERO.server with Blitz and Tables only
09:49:57# (i.e. disable Processor, DropBox, Indexer, PixelData)
09:49:57# set this to ``master:Blitz-0,Tables-0``.
09:49:57# Also use this to distribute OMERO services across multiple nodes,
09:49:57# for example:
09:49:57# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
09:49:57# See
09:49:57# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples09:49:57omero.server.nodedescriptors=
09:49:5709:49:57#############################################
09:49:57## Darwin (OS X) specific defaults for templated configuration files only.
09:49:57## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
09:49:57## file.
09:49:57## Do not set these properties in ``omero config``, instead set the original
09:49:57## ``xxx.yyy`` property
09:49:57#############################################
09:49:57_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
09:49:5709:49:57## (For documentation only)
09:49:57# Name of the Python module to use when starting the Tables service
09:49:57omero.tables.module=runTables
09:49:5709:49:57#############################################
09:49:57## Server product name for release artifacts
09:49:57#############################################
09:49:57product.name=OMERO.server
09:49:5709:49:57#############################################
09:49:57### Properties below this marker are ignored by
09:49:57### omero.install.config_parser.PropertyParser
09:49:57### END
09:49:5709:49:57#############################################
09:49:57## Library versions
09:49:57#############################################
09:49:57##
09:49:57versions.findbugs=1.2.1
09:49:57versions.ice36=3.6.5
09:49:57versions.ice36_lib=36
09:49:57## internal
09:49:57versions.omeroshares36=3.6.3
09:49:57versions.omeromock36=3.6.3
09:49:57versions.icedb36=3.6.3
09:49:57versions.ipython=1.2.1
09:49:5709:49:57versions.janino=2.5.10
09:49:5709:49:57versions.reportng=1.1.1
09:49:5709:49:57versions.testng=7.5
09:49:57versions.velocity=1.4
09:49:5709:49:57versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE09:49:57versions.omero-scripts-url=${versions.omero-pypi}
09:49:5709:49:57###
09:49:57### Appended Values
09:49:57###
09:49:5709:49:57## Internal dependencies'
09:49:57+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/09:49:57+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive09:49:57+ echo versions.scripts-prefix=
09:49:57+ echo versions.scripts=merge_ci
09:49:57+ cat /home/omero/workspace/OMERO-push/version.properties
09:49:57+ git commit -a -m 'Add version.properties to etc/omero.properties'
09:49:57[detached HEAD 916b82979f] Add version.properties to etc/omero.properties
09:49:57 1 file changed, 46 insertions(+), 6 deletions(-)
09:49:57+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
09:50:01To github.com:snoopycrimecop/openmicroscopy.git
09:50:01 + 05c9d1bf8e...916b82979f HEAD -> merge_ci (forced update)
09:50:01Finished: SUCCESS
