17:28:47Started by upstream project "Trigger" build number 18717:28:47originally caused by:
17:28:47 Started by user devspace17:28:47Running as SYSTEM
17:28:47Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
17:28:47The recommended git tool is: NONE
17:28:47No credentials specified
17:28:47 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
17:28:47Fetching changes from the remote Git repository
17:28:47 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
17:28:47Fetching upstream changes from https://github.com/ome/openmicroscopy.git17:28:47 > git --version # timeout=10
17:28:47 > git --version # 'git version 2.39.3'
17:28:47 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
17:28:48 > git rev-parse origin/develop^{commit} # timeout=10
17:28:48Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
17:28:48 > git config core.sparsecheckout # timeout=10
17:28:48 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
17:28:50Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
17:28:50 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
17:28:50Cleaning workspace
17:28:50 > git rev-parse --verify HEAD # timeout=10
17:28:50Resetting working tree
17:28:50 > git reset --hard # timeout=10
17:28:50 > git clean -fdx # timeout=10
17:28:50Copied 1 artifact from "OMERO-python-superbuild-build" build number 15617:28:50[OMERO-push] $ /bin/bash -xe /tmp/jenkins7370177644536273248.sh
17:28:50+ python3 -mvenv venv
17:28:52+ source /home/omero/workspace/OMERO-push/venv/bin/activate
17:28:52++ deactivate nondestructive
17:28:52++ '[' -n '' ']'
17:28:52++ '[' -n '' ']'
17:28:52++ '[' -n /bin/bash -o -n '' ']'
17:28:52++ hash -r
17:28:52++ '[' -n '' ']'
17:28:52++ unset VIRTUAL_ENV
17:28:52++ '[' '!' nondestructive = nondestructive ']'
17:28:52++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
17:28:52++ export VIRTUAL_ENV
17:28:52++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:28:52++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:28:52++ export PATH
17:28:52++ '[' -n '' ']'
17:28:52++ '[' -z '' ']'
17:28:52++ _OLD_VIRTUAL_PS1=
17:28:52++ PS1='(venv) '
17:28:52++ export PS1
17:28:52++ '[' -n /bin/bash -o -n '' ']'
17:28:52++ hash -r
17:28:52+ pip install -U pip
17:28:54Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
17:28:54+ pip install -U scc
17:28:55Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
17:28:55Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
17:28:55Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
17:28:55Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
17:28:55Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
17:28:55Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
17:28:55Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
17:28:55Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
17:28:55Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
17:28:55Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
17:28:55Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
17:28:55Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
17:28:55Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
17:28:55Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
17:28:55Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
17:28:55Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
17:28:55Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
17:28:55Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
17:28:55Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
17:28:55Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
17:28:55Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
17:28:55Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
17:28:55+ test -e src
17:28:55+ cd src
17:28:55++ git config github.user
17:28:55+ user=snoopycrimecop
17:28:55+ scc merge develop --no-ask --reset --shallow -S success-only
17:29:002024-08-27 17:29:00,285 [ scc.merge] INFO Merging Pull Request(s) based on develop
17:29:002024-08-27 17:29:00,285 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
17:29:002024-08-27 17:29:00,285 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
17:29:002024-08-27 17:29:00,285 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
17:29:002024-08-27 17:29:00,285 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
17:29:002024-08-27 17:29:00,285 [ scc.merge] INFO Excluding Pull Request(s) without successful status
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO Repository: ome/openmicroscopy
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO Excluded PRs:
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO Already up to date.
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO Merged PRs:
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6309 jburel 'add try block'
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
17:29:172024-08-27 17:29:17,959 [ scc.merge] INFO
17:29:18+ cp etc/omero.properties etc/omero.properties.bak
17:29:18+ rm etc/omero.properties
17:29:18+ touch etc/omero.properties
17:29:18++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
17:29:18+ ne=249
17:29:18++ sed -n 1,249p etc/omero.properties.bak
17:29:18+ line='##
17:29:18## omero.properties
17:29:18## ----------------
17:29:18##
17:29:18## DO NOT EDIT!
17:29:18##
17:29:18##
17:29:18## Any of these properties can be altered by using `omero config`. MODIFYING
17:29:18## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
17:29:18## at compile time!
17:29:18##
17:29:18## For an overview of these properties, see
17:29:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html17:29:18##
17:29:18## Properties marked with "DEVELOPMENT" should not be used in production.
17:29:1817:29:18# Comma separated list of Ice transports available to clients. The default
17:29:18# value ("ssl,tcp") instructs Ice to open the ports specified by the
17:29:18# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
17:29:18# will prevent all non-encrypted connections to the OMERO server.
17:29:18#
17:29:18# Additionally, there are two experimental values for using websockets:
17:29:18# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
17:29:18# that are opened are controlled by the omero.ports.ws and omero.ports.wss
17:29:18# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
17:29:18#
17:29:18# Note: When using websockets behind a web server like nginx, additional
17:29:18# configuration may be needed.
17:29:18omero.client.icetransports=ssl,tcp
17:29:1817:29:18# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
17:29:18# server
17:29:18omero.ports.prefix=
17:29:1817:29:18# The Glacier2 SSL port number to use
17:29:18omero.ports.ssl=4064
17:29:1817:29:18# The Glacier2 TCP port number to use (unencrypted)
17:29:18omero.ports.tcp=4063
17:29:1817:29:18# The Glacier2 WSS port number to use
17:29:18omero.ports.wss=4066
17:29:1817:29:18# The Glacier2 WS port number to use (unencrypted)
17:29:18omero.ports.ws=4065
17:29:1817:29:18# The IceGrid registry port number to use
17:29:18omero.ports.registry=4061
17:29:1817:29:18#############################################
17:29:18## JVM configuration
17:29:18##
17:29:18## Note: changes to the omero.jvmcfg properties
17:29:18## will *not* be reflected in OMERO.server
17:29:18## since they are defined in OMERO.py.
17:29:18#############################################
17:29:18## (For documentation only)
17:29:18# Memory strategy which will be used by default.
17:29:18# Options include: percent, manual
17:29:18omero.jvmcfg.strategy=percent
17:29:1817:29:18## (For documentation only)
17:29:18# Explicit value for the `-Xmx` argument, e.g.
17:29:18# "1g"
17:29:18omero.jvmcfg.heap_size=
17:29:1817:29:18## (For documentation only)
17:29:18# Explicit value for the MaxPermSize argument
17:29:18# to the JVM, e.g. "500M". Ignored for Java8+
17:29:18omero.jvmcfg.perm_gen=
17:29:1817:29:18## (For documentation only)
17:29:18# Toggles on or off heap dumps on OOMs. Default is "off".
17:29:18# The special value "tmp" will create the heap dumps in
17:29:18# your temp directory.
17:29:18omero.jvmcfg.heap_dump=
17:29:1817:29:18## (For documentation only)
17:29:18# Used only by the percent strategy. An integer between 0
17:29:18# and 100 which is the percent of active memory that will
17:29:18# be used by the service.
17:29:18omero.jvmcfg.percent=
17:29:1817:29:18## (For documentation only)
17:29:18# Contains other parameters which should be passed to the
17:29:18# JVM. The value of "append" is treated as if it were on
17:29:18# the command line so will be separated on whitespace.
17:29:18# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
17:29:18# results in two new arguments.
17:29:18# Note that when using `config set` from the command line
17:29:18# one may need to give a prior `--` option to prevent a value
17:29:18# starting with `-` from already being parsed as an option,
17:29:18# and values may need quoting to prevent whitespace or other
17:29:18# significant characters from being interpreted prematurely.
17:29:1817:29:18omero.jvmcfg.append=
17:29:1817:29:18## (For documentation only)
17:29:18# Manual override of the total system memory that
17:29:18# OMERO will *think* is present on the local OS (MB).
17:29:18# If unset, an attempt will be made to detect the actual
17:29:18# amount: first by using the Python library `psutil` and
17:29:18# if that is not installed, by running a Java tool. If
17:29:18# neither works, 4.0GB is assumed.
17:29:18omero.jvmcfg.system_memory=
17:29:1817:29:18## (For documentation only)
17:29:18# Suggestion for strategies as to the minimum memory
17:29:18# that they will use for calculating JVM settings (MB).
17:29:18omero.jvmcfg.min_system_memory=3414
17:29:1817:29:18## (For documentation only)
17:29:18# Suggestion for strategies as to the maximum memory
17:29:18# that they will use for calculating JVM settings (MB).
17:29:18omero.jvmcfg.max_system_memory=48000
17:29:1817:29:1817:29:18#############################################
17:29:18## Logging properties
17:29:18##
17:29:18## Note: changes to the default omero.logging values in
17:29:18## this file will *not* be reflected in OMERO.server
17:29:18## since they are defined in OMERO.py
17:29:18#############################################
17:29:1817:29:18## (For documentation only)
17:29:18# Relative server directory where the log files should be stored.
17:29:18omero.logging.directory=var/log/
17:29:1817:29:18## (For documentation only)
17:29:18# Whether the server log files should be rotated at a certain time
17:29:18# interval. If true, log files will be rolled over at midnight.
17:29:18# Otherwise, log files will be rolled over at a predetermined size,
17:29:18# see omero.logging.logsize for more information.
17:29:18omero.logging.timedlog=false
17:29:1817:29:18## (For documentation only)
17:29:18# If omero.logging.timedlog is false or unset, specifies the
17:29:18# maximum size of the server log files in bytes above which a
17:29:18# new log file should be created.
17:29:18omero.logging.logsize=5000000
17:29:1817:29:18## (For documentation only)
17:29:18# If omero.logging.timedlog is false or unset, specifies the
17:29:18# number of old server log files that should be kept. Old log
17:29:18# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
17:29:18omero.logging.lognum=9
17:29:1817:29:18## (For documentation only)
17:29:18# Specifies the threshold for the Python servers log files. Logging messages
17:29:18# which are less severe than this value will be ignored. For a list of
17:29:18# available values, see https://docs.python.org/3/library/logging.html#levels.
17:29:18omero.logging.level=20
17:29:1817:29:18#############################################
17:29:18## Ice overrides
17:29:18##
17:29:18## Though not used directly by OMERO, a number
17:29:18## of properties prefixed with "Ice.*" will
17:29:18## alter the behavior of the OMERO runtime
17:29:18## by configuring the Ice communicators. For a
17:29:18## full listing see:
17:29:18##
17:29:18## http://doc.zeroc.com/display/Ice/Property+Reference17:29:18## For more information see
17:29:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start17:29:18#############################################
17:29:1817:29:18# Disable IPv6 by setting to 0. Only needed in
17:29:18# certain situations.
17:29:18Ice.IPv6=1
17:29:1817:29:18# Glacier2Template IceSSL defaults and overrides,
17:29:18# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
17:29:18# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
17:29:18# update the corresponding IceSSL. property.
17:29:18omero.glacier2.IceSSL=
17:29:1817:29:18# Glacier2Template SSL maximum allowed protocol (mac bug)
17:29:18omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
17:29:18# Glacier2Template SSL allowed cipher suites
17:29:18omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
17:29:18# Glacier2Template SSL verification requirements
17:29:18omero.glacier2.IceSSL.VerifyPeer=0
17:29:18# Glacier2Template SSL allowed protocols
17:29:18omero.glacier2.IceSSL.Protocols=tls1
17:29:1817:29:18# Override the default set of OMERO services.
17:29:18# For example, to run OMERO.server with Blitz and Tables only
17:29:18# (i.e. disable Processor, DropBox, Indexer, PixelData)
17:29:18# set this to ``master:Blitz-0,Tables-0``.
17:29:18# Also use this to distribute OMERO services across multiple nodes,
17:29:18# for example:
17:29:18# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
17:29:18# See
17:29:18# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples17:29:18omero.server.nodedescriptors=
17:29:1817:29:18#############################################
17:29:18## Darwin (OS X) specific defaults for templated configuration files only.
17:29:18## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
17:29:18## file.
17:29:18## Do not set these properties in ``omero config``, instead set the original
17:29:18## ``xxx.yyy`` property
17:29:18#############################################
17:29:18_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
17:29:1817:29:18## (For documentation only)
17:29:18# Name of the Python module to use when starting the Tables service
17:29:18omero.tables.module=runTables
17:29:1817:29:18#############################################
17:29:18## Server product name for release artifacts
17:29:18#############################################
17:29:18product.name=OMERO.server
17:29:1817:29:18#############################################
17:29:18### Properties below this marker are ignored by
17:29:18### omero.install.config_parser.PropertyParser
17:29:18### END
17:29:1817:29:18#############################################
17:29:18## Library versions
17:29:18#############################################
17:29:18##
17:29:18versions.findbugs=1.2.1
17:29:18versions.ice36=3.6.5
17:29:18versions.ice36_lib=36
17:29:18## internal
17:29:18versions.omeroshares36=3.6.3
17:29:18versions.omeromock36=3.6.3
17:29:18versions.icedb36=3.6.3
17:29:18versions.ipython=1.2.1
17:29:1817:29:18versions.janino=2.5.10
17:29:1817:29:18versions.reportng=1.1.1
17:29:1817:29:18versions.testng=7.5
17:29:18versions.velocity=1.4
17:29:1817:29:18versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE17:29:18versions.omero-scripts-url=${versions.omero-pypi}
17:29:1817:29:18###
17:29:18### Appended Values
17:29:18###
17:29:1817:29:18## Internal dependencies'
17:29:18+ echo '##
17:29:18## omero.properties
17:29:18## ----------------
17:29:18##
17:29:18## DO NOT EDIT!
17:29:18##
17:29:18##
17:29:18## Any of these properties can be altered by using `omero config`. MODIFYING
17:29:18## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
17:29:18## at compile time!
17:29:18##
17:29:18## For an overview of these properties, see
17:29:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html17:29:18##
17:29:18## Properties marked with "DEVELOPMENT" should not be used in production.
17:29:1817:29:18# Comma separated list of Ice transports available to clients. The default
17:29:18# value ("ssl,tcp") instructs Ice to open the ports specified by the
17:29:18# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
17:29:18# will prevent all non-encrypted connections to the OMERO server.
17:29:18#
17:29:18# Additionally, there are two experimental values for using websockets:
17:29:18# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
17:29:18# that are opened are controlled by the omero.ports.ws and omero.ports.wss
17:29:18# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
17:29:18#
17:29:18# Note: When using websockets behind a web server like nginx, additional
17:29:18# configuration may be needed.
17:29:18omero.client.icetransports=ssl,tcp
17:29:1817:29:18# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
17:29:18# server
17:29:18omero.ports.prefix=
17:29:1817:29:18# The Glacier2 SSL port number to use
17:29:18omero.ports.ssl=4064
17:29:1817:29:18# The Glacier2 TCP port number to use (unencrypted)
17:29:18omero.ports.tcp=4063
17:29:1817:29:18# The Glacier2 WSS port number to use
17:29:18omero.ports.wss=4066
17:29:1817:29:18# The Glacier2 WS port number to use (unencrypted)
17:29:18omero.ports.ws=4065
17:29:1817:29:18# The IceGrid registry port number to use
17:29:18omero.ports.registry=4061
17:29:1817:29:18#############################################
17:29:18## JVM configuration
17:29:18##
17:29:18## Note: changes to the omero.jvmcfg properties
17:29:18## will *not* be reflected in OMERO.server
17:29:18## since they are defined in OMERO.py.
17:29:18#############################################
17:29:18## (For documentation only)
17:29:18# Memory strategy which will be used by default.
17:29:18# Options include: percent, manual
17:29:18omero.jvmcfg.strategy=percent
17:29:1817:29:18## (For documentation only)
17:29:18# Explicit value for the `-Xmx` argument, e.g.
17:29:18# "1g"
17:29:18omero.jvmcfg.heap_size=
17:29:1817:29:18## (For documentation only)
17:29:18# Explicit value for the MaxPermSize argument
17:29:18# to the JVM, e.g. "500M". Ignored for Java8+
17:29:18omero.jvmcfg.perm_gen=
17:29:1817:29:18## (For documentation only)
17:29:18# Toggles on or off heap dumps on OOMs. Default is "off".
17:29:18# The special value "tmp" will create the heap dumps in
17:29:18# your temp directory.
17:29:18omero.jvmcfg.heap_dump=
17:29:1817:29:18## (For documentation only)
17:29:18# Used only by the percent strategy. An integer between 0
17:29:18# and 100 which is the percent of active memory that will
17:29:18# be used by the service.
17:29:18omero.jvmcfg.percent=
17:29:1817:29:18## (For documentation only)
17:29:18# Contains other parameters which should be passed to the
17:29:18# JVM. The value of "append" is treated as if it were on
17:29:18# the command line so will be separated on whitespace.
17:29:18# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
17:29:18# results in two new arguments.
17:29:18# Note that when using `config set` from the command line
17:29:18# one may need to give a prior `--` option to prevent a value
17:29:18# starting with `-` from already being parsed as an option,
17:29:18# and values may need quoting to prevent whitespace or other
17:29:18# significant characters from being interpreted prematurely.
17:29:1817:29:18omero.jvmcfg.append=
17:29:1817:29:18## (For documentation only)
17:29:18# Manual override of the total system memory that
17:29:18# OMERO will *think* is present on the local OS (MB).
17:29:18# If unset, an attempt will be made to detect the actual
17:29:18# amount: first by using the Python library `psutil` and
17:29:18# if that is not installed, by running a Java tool. If
17:29:18# neither works, 4.0GB is assumed.
17:29:18omero.jvmcfg.system_memory=
17:29:1817:29:18## (For documentation only)
17:29:18# Suggestion for strategies as to the minimum memory
17:29:18# that they will use for calculating JVM settings (MB).
17:29:18omero.jvmcfg.min_system_memory=3414
17:29:1817:29:18## (For documentation only)
17:29:18# Suggestion for strategies as to the maximum memory
17:29:18# that they will use for calculating JVM settings (MB).
17:29:18omero.jvmcfg.max_system_memory=48000
17:29:1817:29:1817:29:18#############################################
17:29:18## Logging properties
17:29:18##
17:29:18## Note: changes to the default omero.logging values in
17:29:18## this file will *not* be reflected in OMERO.server
17:29:18## since they are defined in OMERO.py
17:29:18#############################################
17:29:1817:29:18## (For documentation only)
17:29:18# Relative server directory where the log files should be stored.
17:29:18omero.logging.directory=var/log/
17:29:1817:29:18## (For documentation only)
17:29:18# Whether the server log files should be rotated at a certain time
17:29:18# interval. If true, log files will be rolled over at midnight.
17:29:18# Otherwise, log files will be rolled over at a predetermined size,
17:29:18# see omero.logging.logsize for more information.
17:29:18omero.logging.timedlog=false
17:29:1817:29:18## (For documentation only)
17:29:18# If omero.logging.timedlog is false or unset, specifies the
17:29:18# maximum size of the server log files in bytes above which a
17:29:18# new log file should be created.
17:29:18omero.logging.logsize=5000000
17:29:1817:29:18## (For documentation only)
17:29:18# If omero.logging.timedlog is false or unset, specifies the
17:29:18# number of old server log files that should be kept. Old log
17:29:18# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
17:29:18omero.logging.lognum=9
17:29:1817:29:18## (For documentation only)
17:29:18# Specifies the threshold for the Python servers log files. Logging messages
17:29:18# which are less severe than this value will be ignored. For a list of
17:29:18# available values, see https://docs.python.org/3/library/logging.html#levels.
17:29:18omero.logging.level=20
17:29:1817:29:18#############################################
17:29:18## Ice overrides
17:29:18##
17:29:18## Though not used directly by OMERO, a number
17:29:18## of properties prefixed with "Ice.*" will
17:29:18## alter the behavior of the OMERO runtime
17:29:18## by configuring the Ice communicators. For a
17:29:18## full listing see:
17:29:18##
17:29:18## http://doc.zeroc.com/display/Ice/Property+Reference17:29:18## For more information see
17:29:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start17:29:18#############################################
17:29:1817:29:18# Disable IPv6 by setting to 0. Only needed in
17:29:18# certain situations.
17:29:18Ice.IPv6=1
17:29:1817:29:18# Glacier2Template IceSSL defaults and overrides,
17:29:18# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
17:29:18# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
17:29:18# update the corresponding IceSSL. property.
17:29:18omero.glacier2.IceSSL=
17:29:1817:29:18# Glacier2Template SSL maximum allowed protocol (mac bug)
17:29:18omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
17:29:18# Glacier2Template SSL allowed cipher suites
17:29:18omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
17:29:18# Glacier2Template SSL verification requirements
17:29:18omero.glacier2.IceSSL.VerifyPeer=0
17:29:18# Glacier2Template SSL allowed protocols
17:29:18omero.glacier2.IceSSL.Protocols=tls1
17:29:1817:29:18# Override the default set of OMERO services.
17:29:18# For example, to run OMERO.server with Blitz and Tables only
17:29:18# (i.e. disable Processor, DropBox, Indexer, PixelData)
17:29:18# set this to ``master:Blitz-0,Tables-0``.
17:29:18# Also use this to distribute OMERO services across multiple nodes,
17:29:18# for example:
17:29:18# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
17:29:18# See
17:29:18# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples17:29:18omero.server.nodedescriptors=
17:29:1817:29:18#############################################
17:29:18## Darwin (OS X) specific defaults for templated configuration files only.
17:29:18## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
17:29:18## file.
17:29:18## Do not set these properties in ``omero config``, instead set the original
17:29:18## ``xxx.yyy`` property
17:29:18#############################################
17:29:18_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
17:29:1817:29:18## (For documentation only)
17:29:18# Name of the Python module to use when starting the Tables service
17:29:18omero.tables.module=runTables
17:29:1817:29:18#############################################
17:29:18## Server product name for release artifacts
17:29:18#############################################
17:29:18product.name=OMERO.server
17:29:1817:29:18#############################################
17:29:18### Properties below this marker are ignored by
17:29:18### omero.install.config_parser.PropertyParser
17:29:18### END
17:29:1817:29:18#############################################
17:29:18## Library versions
17:29:18#############################################
17:29:18##
17:29:18versions.findbugs=1.2.1
17:29:18versions.ice36=3.6.5
17:29:18versions.ice36_lib=36
17:29:18## internal
17:29:18versions.omeroshares36=3.6.3
17:29:18versions.omeromock36=3.6.3
17:29:18versions.icedb36=3.6.3
17:29:18versions.ipython=1.2.1
17:29:1817:29:18versions.janino=2.5.10
17:29:1817:29:18versions.reportng=1.1.1
17:29:1817:29:18versions.testng=7.5
17:29:18versions.velocity=1.4
17:29:1817:29:18versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE17:29:18versions.omero-scripts-url=${versions.omero-pypi}
17:29:1817:29:18###
17:29:18### Appended Values
17:29:18###
17:29:1817:29:18## Internal dependencies'
17:29:18+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/17:29:18+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive17:29:18+ echo versions.scripts-prefix=
17:29:18+ echo versions.scripts=merge_ci
17:29:18+ cat /home/omero/workspace/OMERO-push/version.properties
17:29:18+ git commit -a -m 'Add version.properties to etc/omero.properties'
17:29:18[detached HEAD 01e94f4734] Add version.properties to etc/omero.properties
17:29:18 1 file changed, 47 insertions(+), 7 deletions(-)
17:29:18+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
17:29:19To github.com:snoopycrimecop/openmicroscopy.git
17:29:19 + 84affee5bf...01e94f4734 HEAD -> merge_ci (forced update)
17:29:19Finished: SUCCESS
![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
