14:41:56Started by upstream project "Trigger" build number 20714:41:56originally caused by:
14:41:56 Started by user devspace14:41:56Running as SYSTEM
14:41:56Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
14:41:56The recommended git tool is: NONE
14:41:56No credentials specified
14:41:56 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
14:41:56Fetching changes from the remote Git repository
14:41:56 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
14:41:56Fetching upstream changes from https://github.com/ome/openmicroscopy.git14:41:56 > git --version # timeout=10
14:41:56 > git --version # 'git version 2.39.3'
14:41:56 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:41:57 > git rev-parse origin/develop^{commit} # timeout=10
14:41:57Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
14:41:57 > git config core.sparsecheckout # timeout=10
14:41:57 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
14:41:57Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
14:41:57 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
14:41:57Cleaning workspace
14:41:57 > git rev-parse --verify HEAD # timeout=10
14:41:57Resetting working tree
14:41:57 > git reset --hard # timeout=10
14:41:58 > git clean -fdx # timeout=10
14:41:58Copied 1 artifact from "OMERO-python-superbuild-build" build number 17014:41:58[OMERO-push] $ /bin/bash -xe /tmp/jenkins3969419679576632133.sh
14:41:58+ python3 -mvenv venv
14:42:00+ source /home/omero/workspace/OMERO-push/venv/bin/activate
14:42:00++ deactivate nondestructive
14:42:00++ '[' -n '' ']'
14:42:00++ '[' -n '' ']'
14:42:00++ '[' -n /bin/bash -o -n '' ']'
14:42:00++ hash -r
14:42:00++ '[' -n '' ']'
14:42:00++ unset VIRTUAL_ENV
14:42:00++ '[' '!' nondestructive = nondestructive ']'
14:42:00++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
14:42:00++ export VIRTUAL_ENV
14:42:00++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:42:00++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:42:00++ export PATH
14:42:00++ '[' -n '' ']'
14:42:00++ '[' -z '' ']'
14:42:00++ _OLD_VIRTUAL_PS1=
14:42:00++ PS1='(venv) '
14:42:00++ export PS1
14:42:00++ '[' -n /bin/bash -o -n '' ']'
14:42:00++ hash -r
14:42:00+ pip install -U pip
14:42:03Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
14:42:04+ pip install -U scc
14:42:04Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
14:42:04Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
14:42:04Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
14:42:04Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
14:42:04Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
14:42:04Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
14:42:04Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
14:42:04Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
14:42:04Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
14:42:04Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
14:42:04Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
14:42:04Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
14:42:04Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
14:42:04Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
14:42:04Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
14:42:04Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
14:42:04Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
14:42:04Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
14:42:04Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
14:42:04Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
14:42:04Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
14:42:04Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
14:42:04+ test -e src
14:42:04+ cd src
14:42:04++ git config github.user
14:42:04+ user=snoopycrimecop
14:42:04+ scc merge develop --no-ask --reset --shallow -S success-only
14:42:102024-09-11 14:42:10,423 [ scc.merge] INFO Merging Pull Request(s) based on develop
14:42:102024-09-11 14:42:10,423 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
14:42:102024-09-11 14:42:10,423 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
14:42:102024-09-11 14:42:10,423 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
14:42:102024-09-11 14:42:10,423 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
14:42:102024-09-11 14:42:10,423 [ scc.merge] INFO Excluding Pull Request(s) without successful status
14:42:362024-09-11 14:42:36,535 [ scc.merge] INFO Repository: ome/openmicroscopy
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO Excluded PRs:
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO Already up to date.
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO Merged PRs:
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6309 jburel 'add try block'
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
14:42:362024-09-11 14:42:36,536 [ scc.merge] INFO
14:42:36+ cp etc/omero.properties etc/omero.properties.bak
14:42:36+ rm etc/omero.properties
14:42:36+ touch etc/omero.properties
14:42:36++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
14:42:36+ ne=249
14:42:36++ sed -n 1,249p etc/omero.properties.bak
14:42:36+ line='##
14:42:36## omero.properties
14:42:36## ----------------
14:42:36##
14:42:36## DO NOT EDIT!
14:42:36##
14:42:36##
14:42:36## Any of these properties can be altered by using `omero config`. MODIFYING
14:42:36## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
14:42:36## at compile time!
14:42:36##
14:42:36## For an overview of these properties, see
14:42:36## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html14:42:36##
14:42:36## Properties marked with "DEVELOPMENT" should not be used in production.
14:42:3614:42:36# Comma separated list of Ice transports available to clients. The default
14:42:36# value ("ssl,tcp") instructs Ice to open the ports specified by the
14:42:36# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
14:42:36# will prevent all non-encrypted connections to the OMERO server.
14:42:36#
14:42:36# Additionally, there are two experimental values for using websockets:
14:42:36# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
14:42:36# that are opened are controlled by the omero.ports.ws and omero.ports.wss
14:42:36# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
14:42:36#
14:42:36# Note: When using websockets behind a web server like nginx, additional
14:42:36# configuration may be needed.
14:42:36omero.client.icetransports=ssl,tcp
14:42:3614:42:36# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
14:42:36# server
14:42:36omero.ports.prefix=
14:42:3614:42:36# The Glacier2 SSL port number to use
14:42:36omero.ports.ssl=4064
14:42:3614:42:36# The Glacier2 TCP port number to use (unencrypted)
14:42:36omero.ports.tcp=4063
14:42:3614:42:36# The Glacier2 WSS port number to use
14:42:36omero.ports.wss=4066
14:42:3614:42:36# The Glacier2 WS port number to use (unencrypted)
14:42:36omero.ports.ws=4065
14:42:3614:42:36# The IceGrid registry port number to use
14:42:36omero.ports.registry=4061
14:42:3614:42:36#############################################
14:42:36## JVM configuration
14:42:36##
14:42:36## Note: changes to the omero.jvmcfg properties
14:42:36## will *not* be reflected in OMERO.server
14:42:36## since they are defined in OMERO.py.
14:42:36#############################################
14:42:36## (For documentation only)
14:42:36# Memory strategy which will be used by default.
14:42:36# Options include: percent, manual
14:42:36omero.jvmcfg.strategy=percent
14:42:3614:42:36## (For documentation only)
14:42:36# Explicit value for the `-Xmx` argument, e.g.
14:42:36# "1g"
14:42:36omero.jvmcfg.heap_size=
14:42:3614:42:36## (For documentation only)
14:42:36# Explicit value for the MaxPermSize argument
14:42:36# to the JVM, e.g. "500M". Ignored for Java8+
14:42:36omero.jvmcfg.perm_gen=
14:42:3614:42:36## (For documentation only)
14:42:36# Toggles on or off heap dumps on OOMs. Default is "off".
14:42:36# The special value "tmp" will create the heap dumps in
14:42:36# your temp directory.
14:42:36omero.jvmcfg.heap_dump=
14:42:3614:42:36## (For documentation only)
14:42:36# Used only by the percent strategy. An integer between 0
14:42:36# and 100 which is the percent of active memory that will
14:42:36# be used by the service.
14:42:36omero.jvmcfg.percent=
14:42:3614:42:36## (For documentation only)
14:42:36# Contains other parameters which should be passed to the
14:42:36# JVM. The value of "append" is treated as if it were on
14:42:36# the command line so will be separated on whitespace.
14:42:36# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
14:42:36# results in two new arguments.
14:42:36# Note that when using `config set` from the command line
14:42:36# one may need to give a prior `--` option to prevent a value
14:42:36# starting with `-` from already being parsed as an option,
14:42:36# and values may need quoting to prevent whitespace or other
14:42:36# significant characters from being interpreted prematurely.
14:42:3614:42:36omero.jvmcfg.append=
14:42:3614:42:36## (For documentation only)
14:42:36# Manual override of the total system memory that
14:42:36# OMERO will *think* is present on the local OS (MB).
14:42:36# If unset, an attempt will be made to detect the actual
14:42:36# amount: first by using the Python library `psutil` and
14:42:36# if that is not installed, by running a Java tool. If
14:42:36# neither works, 4.0GB is assumed.
14:42:36omero.jvmcfg.system_memory=
14:42:3614:42:36## (For documentation only)
14:42:36# Suggestion for strategies as to the minimum memory
14:42:36# that they will use for calculating JVM settings (MB).
14:42:36omero.jvmcfg.min_system_memory=3414
14:42:3614:42:36## (For documentation only)
14:42:36# Suggestion for strategies as to the maximum memory
14:42:36# that they will use for calculating JVM settings (MB).
14:42:36omero.jvmcfg.max_system_memory=48000
14:42:3614:42:3614:42:36#############################################
14:42:36## Logging properties
14:42:36##
14:42:36## Note: changes to the default omero.logging values in
14:42:36## this file will *not* be reflected in OMERO.server
14:42:36## since they are defined in OMERO.py
14:42:36#############################################
14:42:3614:42:36## (For documentation only)
14:42:36# Relative server directory where the log files should be stored.
14:42:36omero.logging.directory=var/log/
14:42:3614:42:36## (For documentation only)
14:42:36# Whether the server log files should be rotated at a certain time
14:42:36# interval. If true, log files will be rolled over at midnight.
14:42:36# Otherwise, log files will be rolled over at a predetermined size,
14:42:36# see omero.logging.logsize for more information.
14:42:36omero.logging.timedlog=false
14:42:3614:42:36## (For documentation only)
14:42:36# If omero.logging.timedlog is false or unset, specifies the
14:42:36# maximum size of the server log files in bytes above which a
14:42:36# new log file should be created.
14:42:36omero.logging.logsize=5000000
14:42:3614:42:36## (For documentation only)
14:42:36# If omero.logging.timedlog is false or unset, specifies the
14:42:36# number of old server log files that should be kept. Old log
14:42:36# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
14:42:36omero.logging.lognum=9
14:42:3614:42:36## (For documentation only)
14:42:36# Specifies the threshold for the Python servers log files. Logging messages
14:42:36# which are less severe than this value will be ignored. For a list of
14:42:36# available values, see https://docs.python.org/3/library/logging.html#levels.
14:42:36omero.logging.level=20
14:42:3614:42:36#############################################
14:42:36## Ice overrides
14:42:36##
14:42:36## Though not used directly by OMERO, a number
14:42:36## of properties prefixed with "Ice.*" will
14:42:36## alter the behavior of the OMERO runtime
14:42:36## by configuring the Ice communicators. For a
14:42:36## full listing see:
14:42:36##
14:42:36## http://doc.zeroc.com/display/Ice/Property+Reference14:42:36## For more information see
14:42:36## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start14:42:36#############################################
14:42:3614:42:36# Disable IPv6 by setting to 0. Only needed in
14:42:36# certain situations.
14:42:36Ice.IPv6=1
14:42:3614:42:36# Glacier2Template IceSSL defaults and overrides,
14:42:36# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
14:42:36# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
14:42:36# update the corresponding IceSSL. property.
14:42:36omero.glacier2.IceSSL=
14:42:3614:42:36# Glacier2Template SSL maximum allowed protocol (mac bug)
14:42:36omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
14:42:36# Glacier2Template SSL allowed cipher suites
14:42:36omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
14:42:36# Glacier2Template SSL verification requirements
14:42:36omero.glacier2.IceSSL.VerifyPeer=0
14:42:36# Glacier2Template SSL allowed protocols
14:42:36omero.glacier2.IceSSL.Protocols=tls1
14:42:3614:42:36# Override the default set of OMERO services.
14:42:36# For example, to run OMERO.server with Blitz and Tables only
14:42:36# (i.e. disable Processor, DropBox, Indexer, PixelData)
14:42:36# set this to ``master:Blitz-0,Tables-0``.
14:42:36# Also use this to distribute OMERO services across multiple nodes,
14:42:36# for example:
14:42:36# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
14:42:36# See
14:42:36# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples14:42:36omero.server.nodedescriptors=
14:42:3614:42:36#############################################
14:42:36## Darwin (OS X) specific defaults for templated configuration files only.
14:42:36## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
14:42:36## file.
14:42:36## Do not set these properties in ``omero config``, instead set the original
14:42:36## ``xxx.yyy`` property
14:42:36#############################################
14:42:36_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
14:42:3614:42:36## (For documentation only)
14:42:36# Name of the Python module to use when starting the Tables service
14:42:36omero.tables.module=runTables
14:42:3614:42:36#############################################
14:42:36## Server product name for release artifacts
14:42:36#############################################
14:42:36product.name=OMERO.server
14:42:3614:42:36#############################################
14:42:36### Properties below this marker are ignored by
14:42:36### omero.install.config_parser.PropertyParser
14:42:36### END
14:42:3614:42:36#############################################
14:42:36## Library versions
14:42:36#############################################
14:42:36##
14:42:36versions.findbugs=1.2.1
14:42:36versions.ice36=3.6.5
14:42:36versions.ice36_lib=36
14:42:36## internal
14:42:36versions.omeroshares36=3.6.3
14:42:36versions.omeromock36=3.6.3
14:42:36versions.icedb36=3.6.3
14:42:36versions.ipython=1.2.1
14:42:3614:42:36versions.janino=2.5.10
14:42:3614:42:36versions.reportng=1.1.1
14:42:3614:42:36versions.testng=7.5
14:42:36versions.velocity=1.4
14:42:3614:42:36versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE14:42:36versions.omero-scripts-url=${versions.omero-pypi}
14:42:3614:42:36###
14:42:36### Appended Values
14:42:36###
14:42:3614:42:36## Internal dependencies'
14:42:36+ echo '##
14:42:36## omero.properties
14:42:36## ----------------
14:42:36##
14:42:36## DO NOT EDIT!
14:42:36##
14:42:36##
14:42:36## Any of these properties can be altered by using `omero config`. MODIFYING
14:42:36## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
14:42:36## at compile time!
14:42:36##
14:42:36## For an overview of these properties, see
14:42:36## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html14:42:36##
14:42:36## Properties marked with "DEVELOPMENT" should not be used in production.
14:42:3614:42:36# Comma separated list of Ice transports available to clients. The default
14:42:36# value ("ssl,tcp") instructs Ice to open the ports specified by the
14:42:36# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
14:42:36# will prevent all non-encrypted connections to the OMERO server.
14:42:36#
14:42:36# Additionally, there are two experimental values for using websockets:
14:42:36# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
14:42:36# that are opened are controlled by the omero.ports.ws and omero.ports.wss
14:42:36# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
14:42:36#
14:42:36# Note: When using websockets behind a web server like nginx, additional
14:42:36# configuration may be needed.
14:42:36omero.client.icetransports=ssl,tcp
14:42:3614:42:36# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
14:42:36# server
14:42:36omero.ports.prefix=
14:42:3614:42:36# The Glacier2 SSL port number to use
14:42:36omero.ports.ssl=4064
14:42:3614:42:36# The Glacier2 TCP port number to use (unencrypted)
14:42:36omero.ports.tcp=4063
14:42:3614:42:36# The Glacier2 WSS port number to use
14:42:36omero.ports.wss=4066
14:42:3614:42:36# The Glacier2 WS port number to use (unencrypted)
14:42:36omero.ports.ws=4065
14:42:3614:42:36# The IceGrid registry port number to use
14:42:36omero.ports.registry=4061
14:42:3614:42:36#############################################
14:42:36## JVM configuration
14:42:36##
14:42:36## Note: changes to the omero.jvmcfg properties
14:42:36## will *not* be reflected in OMERO.server
14:42:36## since they are defined in OMERO.py.
14:42:36#############################################
14:42:36## (For documentation only)
14:42:36# Memory strategy which will be used by default.
14:42:36# Options include: percent, manual
14:42:36omero.jvmcfg.strategy=percent
14:42:3614:42:36## (For documentation only)
14:42:36# Explicit value for the `-Xmx` argument, e.g.
14:42:36# "1g"
14:42:36omero.jvmcfg.heap_size=
14:42:3614:42:36## (For documentation only)
14:42:36# Explicit value for the MaxPermSize argument
14:42:36# to the JVM, e.g. "500M". Ignored for Java8+
14:42:36omero.jvmcfg.perm_gen=
14:42:3614:42:36## (For documentation only)
14:42:36# Toggles on or off heap dumps on OOMs. Default is "off".
14:42:36# The special value "tmp" will create the heap dumps in
14:42:36# your temp directory.
14:42:36omero.jvmcfg.heap_dump=
14:42:3614:42:36## (For documentation only)
14:42:36# Used only by the percent strategy. An integer between 0
14:42:36# and 100 which is the percent of active memory that will
14:42:36# be used by the service.
14:42:36omero.jvmcfg.percent=
14:42:3614:42:36## (For documentation only)
14:42:36# Contains other parameters which should be passed to the
14:42:36# JVM. The value of "append" is treated as if it were on
14:42:36# the command line so will be separated on whitespace.
14:42:36# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
14:42:36# results in two new arguments.
14:42:36# Note that when using `config set` from the command line
14:42:36# one may need to give a prior `--` option to prevent a value
14:42:36# starting with `-` from already being parsed as an option,
14:42:36# and values may need quoting to prevent whitespace or other
14:42:36# significant characters from being interpreted prematurely.
14:42:3614:42:36omero.jvmcfg.append=
14:42:3614:42:36## (For documentation only)
14:42:36# Manual override of the total system memory that
14:42:36# OMERO will *think* is present on the local OS (MB).
14:42:36# If unset, an attempt will be made to detect the actual
14:42:36# amount: first by using the Python library `psutil` and
14:42:36# if that is not installed, by running a Java tool. If
14:42:36# neither works, 4.0GB is assumed.
14:42:36omero.jvmcfg.system_memory=
14:42:3614:42:36## (For documentation only)
14:42:36# Suggestion for strategies as to the minimum memory
14:42:36# that they will use for calculating JVM settings (MB).
14:42:36omero.jvmcfg.min_system_memory=3414
14:42:3614:42:36## (For documentation only)
14:42:36# Suggestion for strategies as to the maximum memory
14:42:36# that they will use for calculating JVM settings (MB).
14:42:36omero.jvmcfg.max_system_memory=48000
14:42:3614:42:3614:42:36#############################################
14:42:36## Logging properties
14:42:36##
14:42:36## Note: changes to the default omero.logging values in
14:42:36## this file will *not* be reflected in OMERO.server
14:42:36## since they are defined in OMERO.py
14:42:36#############################################
14:42:3614:42:36## (For documentation only)
14:42:36# Relative server directory where the log files should be stored.
14:42:36omero.logging.directory=var/log/
14:42:3614:42:36## (For documentation only)
14:42:36# Whether the server log files should be rotated at a certain time
14:42:36# interval. If true, log files will be rolled over at midnight.
14:42:36# Otherwise, log files will be rolled over at a predetermined size,
14:42:36# see omero.logging.logsize for more information.
14:42:36omero.logging.timedlog=false
14:42:3614:42:36## (For documentation only)
14:42:36# If omero.logging.timedlog is false or unset, specifies the
14:42:36# maximum size of the server log files in bytes above which a
14:42:36# new log file should be created.
14:42:36omero.logging.logsize=5000000
14:42:3614:42:36## (For documentation only)
14:42:36# If omero.logging.timedlog is false or unset, specifies the
14:42:36# number of old server log files that should be kept. Old log
14:42:36# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
14:42:36omero.logging.lognum=9
14:42:3614:42:36## (For documentation only)
14:42:36# Specifies the threshold for the Python servers log files. Logging messages
14:42:36# which are less severe than this value will be ignored. For a list of
14:42:36# available values, see https://docs.python.org/3/library/logging.html#levels.
14:42:36omero.logging.level=20
14:42:3614:42:36#############################################
14:42:36## Ice overrides
14:42:36##
14:42:36## Though not used directly by OMERO, a number
14:42:36## of properties prefixed with "Ice.*" will
14:42:36## alter the behavior of the OMERO runtime
14:42:36## by configuring the Ice communicators. For a
14:42:36## full listing see:
14:42:36##
14:42:36## http://doc.zeroc.com/display/Ice/Property+Reference14:42:36## For more information see
14:42:36## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start14:42:36#############################################
14:42:3614:42:36# Disable IPv6 by setting to 0. Only needed in
14:42:36# certain situations.
14:42:36Ice.IPv6=1
14:42:3614:42:36# Glacier2Template IceSSL defaults and overrides,
14:42:36# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
14:42:36# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
14:42:36# update the corresponding IceSSL. property.
14:42:36omero.glacier2.IceSSL=
14:42:3614:42:36# Glacier2Template SSL maximum allowed protocol (mac bug)
14:42:36omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
14:42:36# Glacier2Template SSL allowed cipher suites
14:42:36omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
14:42:36# Glacier2Template SSL verification requirements
14:42:36omero.glacier2.IceSSL.VerifyPeer=0
14:42:36# Glacier2Template SSL allowed protocols
14:42:36omero.glacier2.IceSSL.Protocols=tls1
14:42:3614:42:36# Override the default set of OMERO services.
14:42:36# For example, to run OMERO.server with Blitz and Tables only
14:42:36# (i.e. disable Processor, DropBox, Indexer, PixelData)
14:42:36# set this to ``master:Blitz-0,Tables-0``.
14:42:36# Also use this to distribute OMERO services across multiple nodes,
14:42:36# for example:
14:42:36# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
14:42:36# See
14:42:36# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples14:42:36omero.server.nodedescriptors=
14:42:3614:42:36#############################################
14:42:36## Darwin (OS X) specific defaults for templated configuration files only.
14:42:36## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
14:42:36## file.
14:42:36## Do not set these properties in ``omero config``, instead set the original
14:42:36## ``xxx.yyy`` property
14:42:36#############################################
14:42:36_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
14:42:3614:42:36## (For documentation only)
14:42:36# Name of the Python module to use when starting the Tables service
14:42:36omero.tables.module=runTables
14:42:3614:42:36#############################################
14:42:36## Server product name for release artifacts
14:42:36#############################################
14:42:36product.name=OMERO.server
14:42:3614:42:36#############################################
14:42:36### Properties below this marker are ignored by
14:42:36### omero.install.config_parser.PropertyParser
14:42:36### END
14:42:3614:42:36#############################################
14:42:36## Library versions
14:42:36#############################################
14:42:36##
14:42:36versions.findbugs=1.2.1
14:42:36versions.ice36=3.6.5
14:42:36versions.ice36_lib=36
14:42:36## internal
14:42:36versions.omeroshares36=3.6.3
14:42:36versions.omeromock36=3.6.3
14:42:36versions.icedb36=3.6.3
14:42:36versions.ipython=1.2.1
14:42:3614:42:36versions.janino=2.5.10
14:42:3614:42:36versions.reportng=1.1.1
14:42:3614:42:36versions.testng=7.5
14:42:36versions.velocity=1.4
14:42:3614:42:36versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE14:42:36versions.omero-scripts-url=${versions.omero-pypi}
14:42:3614:42:36###
14:42:36### Appended Values
14:42:36###
14:42:3614:42:36## Internal dependencies'
14:42:36+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/14:42:36+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive14:42:36+ echo versions.scripts-prefix=
14:42:36+ echo versions.scripts=merge_ci
14:42:36+ cat /home/omero/workspace/OMERO-push/version.properties
14:42:36+ git commit -a -m 'Add version.properties to etc/omero.properties'
14:42:36[detached HEAD ed618683bd] Add version.properties to etc/omero.properties
14:42:36 1 file changed, 47 insertions(+), 7 deletions(-)
14:42:36+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
14:42:38To github.com:snoopycrimecop/openmicroscopy.git
14:42:38 + fd852ee75d...ed618683bd HEAD -> merge_ci (forced update)
14:42:38Finished: SUCCESS
![[Jenkins]](/jenkins/static/58f98332/images/svgs/logo.svg){kind=logo}
