16:16:27Started by upstream project "Trigger" build number 21716:16:27originally caused by:
16:16:27 Started by user devspace16:16:27Running as SYSTEM
16:16:27Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
16:16:27The recommended git tool is: NONE
16:16:27No credentials specified
16:16:27 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
16:16:27Fetching changes from the remote Git repository
16:16:27 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
16:16:27Fetching upstream changes from https://github.com/ome/openmicroscopy.git16:16:27 > git --version # timeout=10
16:16:27 > git --version # 'git version 2.43.5'
16:16:27 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:16:29 > git rev-parse origin/develop^{commit} # timeout=10
16:16:29Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
16:16:29 > git config core.sparsecheckout # timeout=10
16:16:29 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
16:16:30Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
16:16:30 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
16:16:30Cleaning workspace
16:16:30 > git rev-parse --verify HEAD # timeout=10
16:16:30Resetting working tree
16:16:30 > git reset --hard # timeout=10
16:16:30 > git clean -fdx # timeout=10
16:16:31Copied 1 artifact from "OMERO-python-superbuild-build" build number 17916:16:31[OMERO-push] $ /bin/bash -xe /tmp/jenkins6207727490356695612.sh
16:16:31+ python3 -mvenv venv
16:16:33+ source /home/omero/workspace/OMERO-push/venv/bin/activate
16:16:33++ deactivate nondestructive
16:16:33++ '[' -n '' ']'
16:16:33++ '[' -n '' ']'
16:16:33++ '[' -n /bin/bash -o -n '' ']'
16:16:33++ hash -r
16:16:33++ '[' -n '' ']'
16:16:33++ unset VIRTUAL_ENV
16:16:33++ '[' '!' nondestructive = nondestructive ']'
16:16:33++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
16:16:33++ export VIRTUAL_ENV
16:16:33++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:16:33++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:16:33++ export PATH
16:16:33++ '[' -n '' ']'
16:16:33++ '[' -z '' ']'
16:16:33++ _OLD_VIRTUAL_PS1=
16:16:33++ PS1='(venv) '
16:16:33++ export PS1
16:16:33++ '[' -n /bin/bash -o -n '' ']'
16:16:33++ hash -r
16:16:33+ pip install -U pip
16:16:35Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
16:16:35+ pip install -U scc
16:16:35Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
16:16:35Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
16:16:35Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
16:16:35Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
16:16:35Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
16:16:35Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
16:16:35Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
16:16:35Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
16:16:35Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
16:16:35Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
16:16:35Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
16:16:35Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
16:16:35Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
16:16:35Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
16:16:35Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
16:16:35Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
16:16:35Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
16:16:35Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
16:16:35Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
16:16:35Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
16:16:35Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
16:16:35Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
16:16:35+ test -e src
16:16:35+ cd src
16:16:35++ git config github.user
16:16:35+ user=snoopycrimecop
16:16:35+ scc merge develop --no-ask --reset --shallow -S success-only
16:16:412024-09-20 16:16:41,064 [ scc.merge] INFO Merging Pull Request(s) based on develop
16:16:412024-09-20 16:16:41,064 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
16:16:412024-09-20 16:16:41,064 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
16:16:412024-09-20 16:16:41,064 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
16:16:412024-09-20 16:16:41,064 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
16:16:412024-09-20 16:16:41,064 [ scc.merge] INFO Excluding Pull Request(s) without successful status
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO Repository: ome/openmicroscopy
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO Excluded PRs:
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO Already up to date.
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO Merged PRs:
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6309 jburel 'add try block'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API'
16:17:112024-09-20 16:17:11,015 [ scc.merge] INFO
16:17:11+ cp etc/omero.properties etc/omero.properties.bak
16:17:11+ rm etc/omero.properties
16:17:11+ touch etc/omero.properties
16:17:11++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
16:17:11+ ne=249
16:17:11++ sed -n 1,249p etc/omero.properties.bak
16:17:11+ line='##
16:17:11## omero.properties
16:17:11## ----------------
16:17:11##
16:17:11## DO NOT EDIT!
16:17:11##
16:17:11##
16:17:11## Any of these properties can be altered by using `omero config`. MODIFYING
16:17:11## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:17:11## at compile time!
16:17:11##
16:17:11## For an overview of these properties, see
16:17:11## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:17:11##
16:17:11## Properties marked with "DEVELOPMENT" should not be used in production.
16:17:1116:17:11# Comma separated list of Ice transports available to clients. The default
16:17:11# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:17:11# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:17:11# will prevent all non-encrypted connections to the OMERO server.
16:17:11#
16:17:11# Additionally, there are two experimental values for using websockets:
16:17:11# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:17:11# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:17:11# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:17:11#
16:17:11# Note: When using websockets behind a web server like nginx, additional
16:17:11# configuration may be needed.
16:17:11omero.client.icetransports=ssl,tcp
16:17:1116:17:11# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:17:11# server
16:17:11omero.ports.prefix=
16:17:1116:17:11# The Glacier2 SSL port number to use
16:17:11omero.ports.ssl=4064
16:17:1116:17:11# The Glacier2 TCP port number to use (unencrypted)
16:17:11omero.ports.tcp=4063
16:17:1116:17:11# The Glacier2 WSS port number to use
16:17:11omero.ports.wss=4066
16:17:1116:17:11# The Glacier2 WS port number to use (unencrypted)
16:17:11omero.ports.ws=4065
16:17:1116:17:11# The IceGrid registry port number to use
16:17:11omero.ports.registry=4061
16:17:1116:17:11#############################################
16:17:11## JVM configuration
16:17:11##
16:17:11## Note: changes to the omero.jvmcfg properties
16:17:11## will *not* be reflected in OMERO.server
16:17:11## since they are defined in OMERO.py.
16:17:11#############################################
16:17:11## (For documentation only)
16:17:11# Memory strategy which will be used by default.
16:17:11# Options include: percent, manual
16:17:11omero.jvmcfg.strategy=percent
16:17:1116:17:11## (For documentation only)
16:17:11# Explicit value for the `-Xmx` argument, e.g.
16:17:11# "1g"
16:17:11omero.jvmcfg.heap_size=
16:17:1116:17:11## (For documentation only)
16:17:11# Explicit value for the MaxPermSize argument
16:17:11# to the JVM, e.g. "500M". Ignored for Java8+
16:17:11omero.jvmcfg.perm_gen=
16:17:1116:17:11## (For documentation only)
16:17:11# Toggles on or off heap dumps on OOMs. Default is "off".
16:17:11# The special value "tmp" will create the heap dumps in
16:17:11# your temp directory.
16:17:11omero.jvmcfg.heap_dump=
16:17:1116:17:11## (For documentation only)
16:17:11# Used only by the percent strategy. An integer between 0
16:17:11# and 100 which is the percent of active memory that will
16:17:11# be used by the service.
16:17:11omero.jvmcfg.percent=
16:17:1116:17:11## (For documentation only)
16:17:11# Contains other parameters which should be passed to the
16:17:11# JVM. The value of "append" is treated as if it were on
16:17:11# the command line so will be separated on whitespace.
16:17:11# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:17:11# results in two new arguments.
16:17:11# Note that when using `config set` from the command line
16:17:11# one may need to give a prior `--` option to prevent a value
16:17:11# starting with `-` from already being parsed as an option,
16:17:11# and values may need quoting to prevent whitespace or other
16:17:11# significant characters from being interpreted prematurely.
16:17:1116:17:11omero.jvmcfg.append=
16:17:1116:17:11## (For documentation only)
16:17:11# Manual override of the total system memory that
16:17:11# OMERO will *think* is present on the local OS (MB).
16:17:11# If unset, an attempt will be made to detect the actual
16:17:11# amount: first by using the Python library `psutil` and
16:17:11# if that is not installed, by running a Java tool. If
16:17:11# neither works, 4.0GB is assumed.
16:17:11omero.jvmcfg.system_memory=
16:17:1116:17:11## (For documentation only)
16:17:11# Suggestion for strategies as to the minimum memory
16:17:11# that they will use for calculating JVM settings (MB).
16:17:11omero.jvmcfg.min_system_memory=3414
16:17:1116:17:11## (For documentation only)
16:17:11# Suggestion for strategies as to the maximum memory
16:17:11# that they will use for calculating JVM settings (MB).
16:17:11omero.jvmcfg.max_system_memory=48000
16:17:1116:17:1116:17:11#############################################
16:17:11## Logging properties
16:17:11##
16:17:11## Note: changes to the default omero.logging values in
16:17:11## this file will *not* be reflected in OMERO.server
16:17:11## since they are defined in OMERO.py
16:17:11#############################################
16:17:1116:17:11## (For documentation only)
16:17:11# Relative server directory where the log files should be stored.
16:17:11omero.logging.directory=var/log/
16:17:1116:17:11## (For documentation only)
16:17:11# Whether the server log files should be rotated at a certain time
16:17:11# interval. If true, log files will be rolled over at midnight.
16:17:11# Otherwise, log files will be rolled over at a predetermined size,
16:17:11# see omero.logging.logsize for more information.
16:17:11omero.logging.timedlog=false
16:17:1116:17:11## (For documentation only)
16:17:11# If omero.logging.timedlog is false or unset, specifies the
16:17:11# maximum size of the server log files in bytes above which a
16:17:11# new log file should be created.
16:17:11omero.logging.logsize=5000000
16:17:1116:17:11## (For documentation only)
16:17:11# If omero.logging.timedlog is false or unset, specifies the
16:17:11# number of old server log files that should be kept. Old log
16:17:11# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
16:17:11omero.logging.lognum=9
16:17:1116:17:11## (For documentation only)
16:17:11# Specifies the threshold for the Python servers log files. Logging messages
16:17:11# which are less severe than this value will be ignored. For a list of
16:17:11# available values, see https://docs.python.org/3/library/logging.html#levels.
16:17:11omero.logging.level=20
16:17:1116:17:11#############################################
16:17:11## Ice overrides
16:17:11##
16:17:11## Though not used directly by OMERO, a number
16:17:11## of properties prefixed with "Ice.*" will
16:17:11## alter the behavior of the OMERO runtime
16:17:11## by configuring the Ice communicators. For a
16:17:11## full listing see:
16:17:11##
16:17:11## http://doc.zeroc.com/display/Ice/Property+Reference16:17:11## For more information see
16:17:11## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:17:11#############################################
16:17:1116:17:11# Disable IPv6 by setting to 0. Only needed in
16:17:11# certain situations.
16:17:11Ice.IPv6=1
16:17:1116:17:11# Glacier2Template IceSSL defaults and overrides,
16:17:11# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
16:17:11# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:17:11# update the corresponding IceSSL. property.
16:17:11omero.glacier2.IceSSL=
16:17:1116:17:11# Glacier2Template SSL maximum allowed protocol (mac bug)
16:17:11omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:17:11# Glacier2Template SSL allowed cipher suites
16:17:11omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:17:11# Glacier2Template SSL verification requirements
16:17:11omero.glacier2.IceSSL.VerifyPeer=0
16:17:11# Glacier2Template SSL allowed protocols
16:17:11omero.glacier2.IceSSL.Protocols=tls1
16:17:1116:17:11# Override the default set of OMERO services.
16:17:11# For example, to run OMERO.server with Blitz and Tables only
16:17:11# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:17:11# set this to ``master:Blitz-0,Tables-0``.
16:17:11# Also use this to distribute OMERO services across multiple nodes,
16:17:11# for example:
16:17:11# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:17:11# See
16:17:11# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:17:11omero.server.nodedescriptors=
16:17:1116:17:11#############################################
16:17:11## Darwin (OS X) specific defaults for templated configuration files only.
16:17:11## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:17:11## file.
16:17:11## Do not set these properties in ``omero config``, instead set the original
16:17:11## ``xxx.yyy`` property
16:17:11#############################################
16:17:11_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:17:1116:17:11## (For documentation only)
16:17:11# Name of the Python module to use when starting the Tables service
16:17:11omero.tables.module=runTables
16:17:1116:17:11#############################################
16:17:11## Server product name for release artifacts
16:17:11#############################################
16:17:11product.name=OMERO.server
16:17:1116:17:11#############################################
16:17:11### Properties below this marker are ignored by
16:17:11### omero.install.config_parser.PropertyParser
16:17:11### END
16:17:1116:17:11#############################################
16:17:11## Library versions
16:17:11#############################################
16:17:11##
16:17:11versions.findbugs=1.2.1
16:17:11versions.ice36=3.6.5
16:17:11versions.ice36_lib=36
16:17:11## internal
16:17:11versions.omeroshares36=3.6.3
16:17:11versions.omeromock36=3.6.3
16:17:11versions.icedb36=3.6.3
16:17:11versions.ipython=1.2.1
16:17:1116:17:11versions.janino=2.5.10
16:17:1116:17:11versions.reportng=1.1.1
16:17:1116:17:11versions.testng=7.5
16:17:11versions.velocity=1.4
16:17:1116:17:11versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:17:11versions.omero-scripts-url=${versions.omero-pypi}
16:17:1116:17:11###
16:17:11### Appended Values
16:17:11###
16:17:1116:17:11## Internal dependencies'
16:17:11+ echo '##
16:17:11## omero.properties
16:17:11## ----------------
16:17:11##
16:17:11## DO NOT EDIT!
16:17:11##
16:17:11##
16:17:11## Any of these properties can be altered by using `omero config`. MODIFYING
16:17:11## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
16:17:11## at compile time!
16:17:11##
16:17:11## For an overview of these properties, see
16:17:11## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html16:17:11##
16:17:11## Properties marked with "DEVELOPMENT" should not be used in production.
16:17:1116:17:11# Comma separated list of Ice transports available to clients. The default
16:17:11# value ("ssl,tcp") instructs Ice to open the ports specified by the
16:17:11# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
16:17:11# will prevent all non-encrypted connections to the OMERO server.
16:17:11#
16:17:11# Additionally, there are two experimental values for using websockets:
16:17:11# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
16:17:11# that are opened are controlled by the omero.ports.ws and omero.ports.wss
16:17:11# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
16:17:11#
16:17:11# Note: When using websockets behind a web server like nginx, additional
16:17:11# configuration may be needed.
16:17:11omero.client.icetransports=ssl,tcp
16:17:1116:17:11# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
16:17:11# server
16:17:11omero.ports.prefix=
16:17:1116:17:11# The Glacier2 SSL port number to use
16:17:11omero.ports.ssl=4064
16:17:1116:17:11# The Glacier2 TCP port number to use (unencrypted)
16:17:11omero.ports.tcp=4063
16:17:1116:17:11# The Glacier2 WSS port number to use
16:17:11omero.ports.wss=4066
16:17:1116:17:11# The Glacier2 WS port number to use (unencrypted)
16:17:11omero.ports.ws=4065
16:17:1116:17:11# The IceGrid registry port number to use
16:17:11omero.ports.registry=4061
16:17:1116:17:11#############################################
16:17:11## JVM configuration
16:17:11##
16:17:11## Note: changes to the omero.jvmcfg properties
16:17:11## will *not* be reflected in OMERO.server
16:17:11## since they are defined in OMERO.py.
16:17:11#############################################
16:17:11## (For documentation only)
16:17:11# Memory strategy which will be used by default.
16:17:11# Options include: percent, manual
16:17:11omero.jvmcfg.strategy=percent
16:17:1116:17:11## (For documentation only)
16:17:11# Explicit value for the `-Xmx` argument, e.g.
16:17:11# "1g"
16:17:11omero.jvmcfg.heap_size=
16:17:1116:17:11## (For documentation only)
16:17:11# Explicit value for the MaxPermSize argument
16:17:11# to the JVM, e.g. "500M". Ignored for Java8+
16:17:11omero.jvmcfg.perm_gen=
16:17:1116:17:11## (For documentation only)
16:17:11# Toggles on or off heap dumps on OOMs. Default is "off".
16:17:11# The special value "tmp" will create the heap dumps in
16:17:11# your temp directory.
16:17:11omero.jvmcfg.heap_dump=
16:17:1116:17:11## (For documentation only)
16:17:11# Used only by the percent strategy. An integer between 0
16:17:11# and 100 which is the percent of active memory that will
16:17:11# be used by the service.
16:17:11omero.jvmcfg.percent=
16:17:1116:17:11## (For documentation only)
16:17:11# Contains other parameters which should be passed to the
16:17:11# JVM. The value of "append" is treated as if it were on
16:17:11# the command line so will be separated on whitespace.
16:17:11# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
16:17:11# results in two new arguments.
16:17:11# Note that when using `config set` from the command line
16:17:11# one may need to give a prior `--` option to prevent a value
16:17:11# starting with `-` from already being parsed as an option,
16:17:11# and values may need quoting to prevent whitespace or other
16:17:11# significant characters from being interpreted prematurely.
16:17:1116:17:11omero.jvmcfg.append=
16:17:1116:17:11## (For documentation only)
16:17:11# Manual override of the total system memory that
16:17:11# OMERO will *think* is present on the local OS (MB).
16:17:11# If unset, an attempt will be made to detect the actual
16:17:11# amount: first by using the Python library `psutil` and
16:17:11# if that is not installed, by running a Java tool. If
16:17:11# neither works, 4.0GB is assumed.
16:17:11omero.jvmcfg.system_memory=
16:17:1116:17:11## (For documentation only)
16:17:11# Suggestion for strategies as to the minimum memory
16:17:11# that they will use for calculating JVM settings (MB).
16:17:11omero.jvmcfg.min_system_memory=3414
16:17:1116:17:11## (For documentation only)
16:17:11# Suggestion for strategies as to the maximum memory
16:17:11# that they will use for calculating JVM settings (MB).
16:17:11omero.jvmcfg.max_system_memory=48000
16:17:1116:17:1116:17:11#############################################
16:17:11## Logging properties
16:17:11##
16:17:11## Note: changes to the default omero.logging values in
16:17:11## this file will *not* be reflected in OMERO.server
16:17:11## since they are defined in OMERO.py
16:17:11#############################################
16:17:1116:17:11## (For documentation only)
16:17:11# Relative server directory where the log files should be stored.
16:17:11omero.logging.directory=var/log/
16:17:1116:17:11## (For documentation only)
16:17:11# Whether the server log files should be rotated at a certain time
16:17:11# interval. If true, log files will be rolled over at midnight.
16:17:11# Otherwise, log files will be rolled over at a predetermined size,
16:17:11# see omero.logging.logsize for more information.
16:17:11omero.logging.timedlog=false
16:17:1116:17:11## (For documentation only)
16:17:11# If omero.logging.timedlog is false or unset, specifies the
16:17:11# maximum size of the server log files in bytes above which a
16:17:11# new log file should be created.
16:17:11omero.logging.logsize=5000000
16:17:1116:17:11## (For documentation only)
16:17:11# If omero.logging.timedlog is false or unset, specifies the
16:17:11# number of old server log files that should be kept. Old log
16:17:11# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
16:17:11omero.logging.lognum=9
16:17:1116:17:11## (For documentation only)
16:17:11# Specifies the threshold for the Python servers log files. Logging messages
16:17:11# which are less severe than this value will be ignored. For a list of
16:17:11# available values, see https://docs.python.org/3/library/logging.html#levels.
16:17:11omero.logging.level=20
16:17:1116:17:11#############################################
16:17:11## Ice overrides
16:17:11##
16:17:11## Though not used directly by OMERO, a number
16:17:11## of properties prefixed with "Ice.*" will
16:17:11## alter the behavior of the OMERO runtime
16:17:11## by configuring the Ice communicators. For a
16:17:11## full listing see:
16:17:11##
16:17:11## http://doc.zeroc.com/display/Ice/Property+Reference16:17:11## For more information see
16:17:11## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start16:17:11#############################################
16:17:1116:17:11# Disable IPv6 by setting to 0. Only needed in
16:17:11# certain situations.
16:17:11Ice.IPv6=1
16:17:1116:17:11# Glacier2Template IceSSL defaults and overrides,
16:17:11# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
16:17:11# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
16:17:11# update the corresponding IceSSL. property.
16:17:11omero.glacier2.IceSSL=
16:17:1116:17:11# Glacier2Template SSL maximum allowed protocol (mac bug)
16:17:11omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
16:17:11# Glacier2Template SSL allowed cipher suites
16:17:11omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
16:17:11# Glacier2Template SSL verification requirements
16:17:11omero.glacier2.IceSSL.VerifyPeer=0
16:17:11# Glacier2Template SSL allowed protocols
16:17:11omero.glacier2.IceSSL.Protocols=tls1
16:17:1116:17:11# Override the default set of OMERO services.
16:17:11# For example, to run OMERO.server with Blitz and Tables only
16:17:11# (i.e. disable Processor, DropBox, Indexer, PixelData)
16:17:11# set this to ``master:Blitz-0,Tables-0``.
16:17:11# Also use this to distribute OMERO services across multiple nodes,
16:17:11# for example:
16:17:11# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
16:17:11# See
16:17:11# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples16:17:11omero.server.nodedescriptors=
16:17:1116:17:11#############################################
16:17:11## Darwin (OS X) specific defaults for templated configuration files only.
16:17:11## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
16:17:11## file.
16:17:11## Do not set these properties in ``omero config``, instead set the original
16:17:11## ``xxx.yyy`` property
16:17:11#############################################
16:17:11_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
16:17:1116:17:11## (For documentation only)
16:17:11# Name of the Python module to use when starting the Tables service
16:17:11omero.tables.module=runTables
16:17:1116:17:11#############################################
16:17:11## Server product name for release artifacts
16:17:11#############################################
16:17:11product.name=OMERO.server
16:17:1116:17:11#############################################
16:17:11### Properties below this marker are ignored by
16:17:11### omero.install.config_parser.PropertyParser
16:17:11### END
16:17:1116:17:11#############################################
16:17:11## Library versions
16:17:11#############################################
16:17:11##
16:17:11versions.findbugs=1.2.1
16:17:11versions.ice36=3.6.5
16:17:11versions.ice36_lib=36
16:17:11## internal
16:17:11versions.omeroshares36=3.6.3
16:17:11versions.omeromock36=3.6.3
16:17:11versions.icedb36=3.6.3
16:17:11versions.ipython=1.2.1
16:17:1116:17:11versions.janino=2.5.10
16:17:1116:17:11versions.reportng=1.1.1
16:17:1116:17:11versions.testng=7.5
16:17:11versions.velocity=1.4
16:17:1116:17:11versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE16:17:11versions.omero-scripts-url=${versions.omero-pypi}
16:17:1116:17:11###
16:17:11### Appended Values
16:17:11###
16:17:1116:17:11## Internal dependencies'
16:17:11+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/16:17:11+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive16:17:11+ echo versions.scripts-prefix=
16:17:11+ echo versions.scripts=merge_ci
16:17:11+ cat /home/omero/workspace/OMERO-push/version.properties
16:17:11+ git commit -a -m 'Add version.properties to etc/omero.properties'
16:17:11[detached HEAD 9780907658] Add version.properties to etc/omero.properties
16:17:11 1 file changed, 47 insertions(+), 7 deletions(-)
16:17:11+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
16:17:12To github.com:snoopycrimecop/openmicroscopy.git
16:17:12 + 77df235826...9780907658 HEAD -> merge_ci (forced update)
16:17:12Finished: SUCCESS
![[Jenkins]](/jenkins/static/d0200910/images/svgs/logo.svg){kind=logo}
