05:37:39Started by upstream project "Trigger" build number 22505:37:39originally caused by:
05:37:39 Started by user devspace05:37:39Running as SYSTEM
05:37:39Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
05:37:39The recommended git tool is: NONE
05:37:39No credentials specified
05:37:39 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
05:37:39Fetching changes from the remote Git repository
05:37:39 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
05:37:39Fetching upstream changes from https://github.com/ome/openmicroscopy.git05:37:39 > git --version # timeout=10
05:37:39 > git --version # 'git version 2.43.5'
05:37:39 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
05:37:41 > git rev-parse origin/develop^{commit} # timeout=10
05:37:41Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
05:37:41 > git config core.sparsecheckout # timeout=10
05:37:41 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
05:37:43Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
05:37:43 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
05:37:43Cleaning workspace
05:37:43 > git rev-parse --verify HEAD # timeout=10
05:37:43Resetting working tree
05:37:43 > git reset --hard # timeout=10
05:37:43 > git clean -fdx # timeout=10
05:37:43Copied 1 artifact from "OMERO-python-superbuild-build" build number 18405:37:43[OMERO-push] $ /bin/bash -xe /tmp/jenkins13790226229522786718.sh
05:37:43+ python3 -mvenv venv
05:37:45+ source /home/omero/workspace/OMERO-push/venv/bin/activate
05:37:45++ deactivate nondestructive
05:37:45++ '[' -n '' ']'
05:37:45++ '[' -n '' ']'
05:37:45++ '[' -n /bin/bash -o -n '' ']'
05:37:45++ hash -r
05:37:45++ '[' -n '' ']'
05:37:45++ unset VIRTUAL_ENV
05:37:45++ '[' '!' nondestructive = nondestructive ']'
05:37:45++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
05:37:45++ export VIRTUAL_ENV
05:37:45++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:37:45++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:37:45++ export PATH
05:37:45++ '[' -n '' ']'
05:37:45++ '[' -z '' ']'
05:37:45++ _OLD_VIRTUAL_PS1=
05:37:45++ PS1='(venv) '
05:37:45++ export PS1
05:37:45++ '[' -n /bin/bash -o -n '' ']'
05:37:45++ hash -r
05:37:45+ pip install -U pip
05:37:48Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
05:37:49+ pip install -U scc
05:37:49Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
05:37:49Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
05:37:49Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
05:37:49Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
05:37:49Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
05:37:49Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
05:37:49Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
05:37:49Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
05:37:49Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
05:37:49Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
05:37:49Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
05:37:49Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
05:37:49Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
05:37:49Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
05:37:49Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
05:37:49Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
05:37:49Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
05:37:49Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
05:37:49Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
05:37:49Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
05:37:49Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
05:37:49Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
05:37:49+ test -e src
05:37:49+ cd src
05:37:49++ git config github.user
05:37:49+ user=snoopycrimecop
05:37:49+ scc merge develop --no-ask --reset --shallow -S success-only
05:37:552024-09-26 05:37:55,724 [ scc.merge] INFO Merging Pull Request(s) based on develop
05:37:552024-09-26 05:37:55,724 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
05:37:552024-09-26 05:37:55,724 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
05:37:552024-09-26 05:37:55,724 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
05:37:552024-09-26 05:37:55,724 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
05:37:552024-09-26 05:37:55,724 [ scc.merge] INFO Excluding Pull Request(s) without successful status
05:38:262024-09-26 05:38:26,172 [ scc.merge] INFO Repository: ome/openmicroscopy
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO Excluded PRs:
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO Already up to date.
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO Merged PRs:
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6309 jburel 'add try block'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API'
05:38:262024-09-26 05:38:26,173 [ scc.merge] INFO
05:38:26+ cp etc/omero.properties etc/omero.properties.bak
05:38:26+ rm etc/omero.properties
05:38:26+ touch etc/omero.properties
05:38:26++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
05:38:26+ ne=249
05:38:26++ sed -n 1,249p etc/omero.properties.bak
05:38:26+ line='##
05:38:26## omero.properties
05:38:26## ----------------
05:38:26##
05:38:26## DO NOT EDIT!
05:38:26##
05:38:26##
05:38:26## Any of these properties can be altered by using `omero config`. MODIFYING
05:38:26## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
05:38:26## at compile time!
05:38:26##
05:38:26## For an overview of these properties, see
05:38:26## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html05:38:26##
05:38:26## Properties marked with "DEVELOPMENT" should not be used in production.
05:38:2605:38:26# Comma separated list of Ice transports available to clients. The default
05:38:26# value ("ssl,tcp") instructs Ice to open the ports specified by the
05:38:26# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
05:38:26# will prevent all non-encrypted connections to the OMERO server.
05:38:26#
05:38:26# Additionally, there are two experimental values for using websockets:
05:38:26# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
05:38:26# that are opened are controlled by the omero.ports.ws and omero.ports.wss
05:38:26# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
05:38:26#
05:38:26# Note: When using websockets behind a web server like nginx, additional
05:38:26# configuration may be needed.
05:38:26omero.client.icetransports=ssl,tcp
05:38:2605:38:26# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
05:38:26# server
05:38:26omero.ports.prefix=
05:38:2605:38:26# The Glacier2 SSL port number to use
05:38:26omero.ports.ssl=4064
05:38:2605:38:26# The Glacier2 TCP port number to use (unencrypted)
05:38:26omero.ports.tcp=4063
05:38:2605:38:26# The Glacier2 WSS port number to use
05:38:26omero.ports.wss=4066
05:38:2605:38:26# The Glacier2 WS port number to use (unencrypted)
05:38:26omero.ports.ws=4065
05:38:2605:38:26# The IceGrid registry port number to use
05:38:26omero.ports.registry=4061
05:38:2605:38:26#############################################
05:38:26## JVM configuration
05:38:26##
05:38:26## Note: changes to the omero.jvmcfg properties
05:38:26## will *not* be reflected in OMERO.server
05:38:26## since they are defined in OMERO.py.
05:38:26#############################################
05:38:26## (For documentation only)
05:38:26# Memory strategy which will be used by default.
05:38:26# Options include: percent, manual
05:38:26omero.jvmcfg.strategy=percent
05:38:2605:38:26## (For documentation only)
05:38:26# Explicit value for the `-Xmx` argument, e.g.
05:38:26# "1g"
05:38:26omero.jvmcfg.heap_size=
05:38:2605:38:26## (For documentation only)
05:38:26# Explicit value for the MaxPermSize argument
05:38:26# to the JVM, e.g. "500M". Ignored for Java8+
05:38:26omero.jvmcfg.perm_gen=
05:38:2605:38:26## (For documentation only)
05:38:26# Toggles on or off heap dumps on OOMs. Default is "off".
05:38:26# The special value "tmp" will create the heap dumps in
05:38:26# your temp directory.
05:38:26omero.jvmcfg.heap_dump=
05:38:2605:38:26## (For documentation only)
05:38:26# Used only by the percent strategy. An integer between 0
05:38:26# and 100 which is the percent of active memory that will
05:38:26# be used by the service.
05:38:26omero.jvmcfg.percent=
05:38:2605:38:26## (For documentation only)
05:38:26# Contains other parameters which should be passed to the
05:38:26# JVM. The value of "append" is treated as if it were on
05:38:26# the command line so will be separated on whitespace.
05:38:26# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
05:38:26# results in two new arguments.
05:38:26# Note that when using `config set` from the command line
05:38:26# one may need to give a prior `--` option to prevent a value
05:38:26# starting with `-` from already being parsed as an option,
05:38:26# and values may need quoting to prevent whitespace or other
05:38:26# significant characters from being interpreted prematurely.
05:38:2605:38:26omero.jvmcfg.append=
05:38:2605:38:26## (For documentation only)
05:38:26# Manual override of the total system memory that
05:38:26# OMERO will *think* is present on the local OS (MB).
05:38:26# If unset, an attempt will be made to detect the actual
05:38:26# amount: first by using the Python library `psutil` and
05:38:26# if that is not installed, by running a Java tool. If
05:38:26# neither works, 4.0GB is assumed.
05:38:26omero.jvmcfg.system_memory=
05:38:2605:38:26## (For documentation only)
05:38:26# Suggestion for strategies as to the minimum memory
05:38:26# that they will use for calculating JVM settings (MB).
05:38:26omero.jvmcfg.min_system_memory=3414
05:38:2605:38:26## (For documentation only)
05:38:26# Suggestion for strategies as to the maximum memory
05:38:26# that they will use for calculating JVM settings (MB).
05:38:26omero.jvmcfg.max_system_memory=48000
05:38:2605:38:2605:38:26#############################################
05:38:26## Logging properties
05:38:26##
05:38:26## Note: changes to the default omero.logging values in
05:38:26## this file will *not* be reflected in OMERO.server
05:38:26## since they are defined in OMERO.py
05:38:26#############################################
05:38:2605:38:26## (For documentation only)
05:38:26# Relative server directory where the log files should be stored.
05:38:26omero.logging.directory=var/log/
05:38:2605:38:26## (For documentation only)
05:38:26# Whether the server log files should be rotated at a certain time
05:38:26# interval. If true, log files will be rolled over at midnight.
05:38:26# Otherwise, log files will be rolled over at a predetermined size,
05:38:26# see omero.logging.logsize for more information.
05:38:26omero.logging.timedlog=false
05:38:2605:38:26## (For documentation only)
05:38:26# If omero.logging.timedlog is false or unset, specifies the
05:38:26# maximum size of the server log files in bytes above which a
05:38:26# new log file should be created.
05:38:26omero.logging.logsize=5000000
05:38:2605:38:26## (For documentation only)
05:38:26# If omero.logging.timedlog is false or unset, specifies the
05:38:26# number of old server log files that should be kept. Old log
05:38:26# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
05:38:26omero.logging.lognum=9
05:38:2605:38:26## (For documentation only)
05:38:26# Specifies the threshold for the Python servers log files. Logging messages
05:38:26# which are less severe than this value will be ignored. For a list of
05:38:26# available values, see https://docs.python.org/3/library/logging.html#levels.
05:38:26omero.logging.level=20
05:38:2605:38:26#############################################
05:38:26## Ice overrides
05:38:26##
05:38:26## Though not used directly by OMERO, a number
05:38:26## of properties prefixed with "Ice.*" will
05:38:26## alter the behavior of the OMERO runtime
05:38:26## by configuring the Ice communicators. For a
05:38:26## full listing see:
05:38:26##
05:38:26## http://doc.zeroc.com/display/Ice/Property+Reference05:38:26## For more information see
05:38:26## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start05:38:26#############################################
05:38:2605:38:26# Disable IPv6 by setting to 0. Only needed in
05:38:26# certain situations.
05:38:26Ice.IPv6=1
05:38:2605:38:26# Glacier2Template IceSSL defaults and overrides,
05:38:26# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
05:38:26# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
05:38:26# update the corresponding IceSSL. property.
05:38:26omero.glacier2.IceSSL=
05:38:2605:38:26# Glacier2Template SSL maximum allowed protocol (mac bug)
05:38:26omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
05:38:26# Glacier2Template SSL allowed cipher suites
05:38:26omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
05:38:26# Glacier2Template SSL verification requirements
05:38:26omero.glacier2.IceSSL.VerifyPeer=0
05:38:26# Glacier2Template SSL allowed protocols
05:38:26omero.glacier2.IceSSL.Protocols=tls1
05:38:2605:38:26# Override the default set of OMERO services.
05:38:26# For example, to run OMERO.server with Blitz and Tables only
05:38:26# (i.e. disable Processor, DropBox, Indexer, PixelData)
05:38:26# set this to ``master:Blitz-0,Tables-0``.
05:38:26# Also use this to distribute OMERO services across multiple nodes,
05:38:26# for example:
05:38:26# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
05:38:26# See
05:38:26# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples05:38:26omero.server.nodedescriptors=
05:38:2605:38:26#############################################
05:38:26## Darwin (OS X) specific defaults for templated configuration files only.
05:38:26## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
05:38:26## file.
05:38:26## Do not set these properties in ``omero config``, instead set the original
05:38:26## ``xxx.yyy`` property
05:38:26#############################################
05:38:26_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
05:38:2605:38:26## (For documentation only)
05:38:26# Name of the Python module to use when starting the Tables service
05:38:26omero.tables.module=runTables
05:38:2605:38:26#############################################
05:38:26## Server product name for release artifacts
05:38:26#############################################
05:38:26product.name=OMERO.server
05:38:2605:38:26#############################################
05:38:26### Properties below this marker are ignored by
05:38:26### omero.install.config_parser.PropertyParser
05:38:26### END
05:38:2605:38:26#############################################
05:38:26## Library versions
05:38:26#############################################
05:38:26##
05:38:26versions.findbugs=1.2.1
05:38:26versions.ice36=3.6.5
05:38:26versions.ice36_lib=36
05:38:26## internal
05:38:26versions.omeroshares36=3.6.3
05:38:26versions.omeromock36=3.6.3
05:38:26versions.icedb36=3.6.3
05:38:26versions.ipython=1.2.1
05:38:2605:38:26versions.janino=2.5.10
05:38:2605:38:26versions.reportng=1.1.1
05:38:2605:38:26versions.testng=7.5
05:38:26versions.velocity=1.4
05:38:2605:38:26versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE05:38:26versions.omero-scripts-url=${versions.omero-pypi}
05:38:2605:38:26###
05:38:26### Appended Values
05:38:26###
05:38:2605:38:26## Internal dependencies'
05:38:26+ echo '##
05:38:26## omero.properties
05:38:26## ----------------
05:38:26##
05:38:26## DO NOT EDIT!
05:38:26##
05:38:26##
05:38:26## Any of these properties can be altered by using `omero config`. MODIFYING
05:38:26## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
05:38:26## at compile time!
05:38:26##
05:38:26## For an overview of these properties, see
05:38:26## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html05:38:26##
05:38:26## Properties marked with "DEVELOPMENT" should not be used in production.
05:38:2605:38:26# Comma separated list of Ice transports available to clients. The default
05:38:26# value ("ssl,tcp") instructs Ice to open the ports specified by the
05:38:26# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
05:38:26# will prevent all non-encrypted connections to the OMERO server.
05:38:26#
05:38:26# Additionally, there are two experimental values for using websockets:
05:38:26# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
05:38:26# that are opened are controlled by the omero.ports.ws and omero.ports.wss
05:38:26# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
05:38:26#
05:38:26# Note: When using websockets behind a web server like nginx, additional
05:38:26# configuration may be needed.
05:38:26omero.client.icetransports=ssl,tcp
05:38:2605:38:26# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
05:38:26# server
05:38:26omero.ports.prefix=
05:38:2605:38:26# The Glacier2 SSL port number to use
05:38:26omero.ports.ssl=4064
05:38:2605:38:26# The Glacier2 TCP port number to use (unencrypted)
05:38:26omero.ports.tcp=4063
05:38:2605:38:26# The Glacier2 WSS port number to use
05:38:26omero.ports.wss=4066
05:38:2605:38:26# The Glacier2 WS port number to use (unencrypted)
05:38:26omero.ports.ws=4065
05:38:2605:38:26# The IceGrid registry port number to use
05:38:26omero.ports.registry=4061
05:38:2605:38:26#############################################
05:38:26## JVM configuration
05:38:26##
05:38:26## Note: changes to the omero.jvmcfg properties
05:38:26## will *not* be reflected in OMERO.server
05:38:26## since they are defined in OMERO.py.
05:38:26#############################################
05:38:26## (For documentation only)
05:38:26# Memory strategy which will be used by default.
05:38:26# Options include: percent, manual
05:38:26omero.jvmcfg.strategy=percent
05:38:2605:38:26## (For documentation only)
05:38:26# Explicit value for the `-Xmx` argument, e.g.
05:38:26# "1g"
05:38:26omero.jvmcfg.heap_size=
05:38:2605:38:26## (For documentation only)
05:38:26# Explicit value for the MaxPermSize argument
05:38:26# to the JVM, e.g. "500M". Ignored for Java8+
05:38:26omero.jvmcfg.perm_gen=
05:38:2605:38:26## (For documentation only)
05:38:26# Toggles on or off heap dumps on OOMs. Default is "off".
05:38:26# The special value "tmp" will create the heap dumps in
05:38:26# your temp directory.
05:38:26omero.jvmcfg.heap_dump=
05:38:2605:38:26## (For documentation only)
05:38:26# Used only by the percent strategy. An integer between 0
05:38:26# and 100 which is the percent of active memory that will
05:38:26# be used by the service.
05:38:26omero.jvmcfg.percent=
05:38:2605:38:26## (For documentation only)
05:38:26# Contains other parameters which should be passed to the
05:38:26# JVM. The value of "append" is treated as if it were on
05:38:26# the command line so will be separated on whitespace.
05:38:26# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
05:38:26# results in two new arguments.
05:38:26# Note that when using `config set` from the command line
05:38:26# one may need to give a prior `--` option to prevent a value
05:38:26# starting with `-` from already being parsed as an option,
05:38:26# and values may need quoting to prevent whitespace or other
05:38:26# significant characters from being interpreted prematurely.
05:38:2605:38:26omero.jvmcfg.append=
05:38:2605:38:26## (For documentation only)
05:38:26# Manual override of the total system memory that
05:38:26# OMERO will *think* is present on the local OS (MB).
05:38:26# If unset, an attempt will be made to detect the actual
05:38:26# amount: first by using the Python library `psutil` and
05:38:26# if that is not installed, by running a Java tool. If
05:38:26# neither works, 4.0GB is assumed.
05:38:26omero.jvmcfg.system_memory=
05:38:2605:38:26## (For documentation only)
05:38:26# Suggestion for strategies as to the minimum memory
05:38:26# that they will use for calculating JVM settings (MB).
05:38:26omero.jvmcfg.min_system_memory=3414
05:38:2605:38:26## (For documentation only)
05:38:26# Suggestion for strategies as to the maximum memory
05:38:26# that they will use for calculating JVM settings (MB).
05:38:26omero.jvmcfg.max_system_memory=48000
05:38:2605:38:2605:38:26#############################################
05:38:26## Logging properties
05:38:26##
05:38:26## Note: changes to the default omero.logging values in
05:38:26## this file will *not* be reflected in OMERO.server
05:38:26## since they are defined in OMERO.py
05:38:26#############################################
05:38:2605:38:26## (For documentation only)
05:38:26# Relative server directory where the log files should be stored.
05:38:26omero.logging.directory=var/log/
05:38:2605:38:26## (For documentation only)
05:38:26# Whether the server log files should be rotated at a certain time
05:38:26# interval. If true, log files will be rolled over at midnight.
05:38:26# Otherwise, log files will be rolled over at a predetermined size,
05:38:26# see omero.logging.logsize for more information.
05:38:26omero.logging.timedlog=false
05:38:2605:38:26## (For documentation only)
05:38:26# If omero.logging.timedlog is false or unset, specifies the
05:38:26# maximum size of the server log files in bytes above which a
05:38:26# new log file should be created.
05:38:26omero.logging.logsize=5000000
05:38:2605:38:26## (For documentation only)
05:38:26# If omero.logging.timedlog is false or unset, specifies the
05:38:26# number of old server log files that should be kept. Old log
05:38:26# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
05:38:26omero.logging.lognum=9
05:38:2605:38:26## (For documentation only)
05:38:26# Specifies the threshold for the Python servers log files. Logging messages
05:38:26# which are less severe than this value will be ignored. For a list of
05:38:26# available values, see https://docs.python.org/3/library/logging.html#levels.
05:38:26omero.logging.level=20
05:38:2605:38:26#############################################
05:38:26## Ice overrides
05:38:26##
05:38:26## Though not used directly by OMERO, a number
05:38:26## of properties prefixed with "Ice.*" will
05:38:26## alter the behavior of the OMERO runtime
05:38:26## by configuring the Ice communicators. For a
05:38:26## full listing see:
05:38:26##
05:38:26## http://doc.zeroc.com/display/Ice/Property+Reference05:38:26## For more information see
05:38:26## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start05:38:26#############################################
05:38:2605:38:26# Disable IPv6 by setting to 0. Only needed in
05:38:26# certain situations.
05:38:26Ice.IPv6=1
05:38:2605:38:26# Glacier2Template IceSSL defaults and overrides,
05:38:26# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
05:38:26# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
05:38:26# update the corresponding IceSSL. property.
05:38:26omero.glacier2.IceSSL=
05:38:2605:38:26# Glacier2Template SSL maximum allowed protocol (mac bug)
05:38:26omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
05:38:26# Glacier2Template SSL allowed cipher suites
05:38:26omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
05:38:26# Glacier2Template SSL verification requirements
05:38:26omero.glacier2.IceSSL.VerifyPeer=0
05:38:26# Glacier2Template SSL allowed protocols
05:38:26omero.glacier2.IceSSL.Protocols=tls1
05:38:2605:38:26# Override the default set of OMERO services.
05:38:26# For example, to run OMERO.server with Blitz and Tables only
05:38:26# (i.e. disable Processor, DropBox, Indexer, PixelData)
05:38:26# set this to ``master:Blitz-0,Tables-0``.
05:38:26# Also use this to distribute OMERO services across multiple nodes,
05:38:26# for example:
05:38:26# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
05:38:26# See
05:38:26# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples05:38:26omero.server.nodedescriptors=
05:38:2605:38:26#############################################
05:38:26## Darwin (OS X) specific defaults for templated configuration files only.
05:38:26## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
05:38:26## file.
05:38:26## Do not set these properties in ``omero config``, instead set the original
05:38:26## ``xxx.yyy`` property
05:38:26#############################################
05:38:26_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
05:38:2605:38:26## (For documentation only)
05:38:26# Name of the Python module to use when starting the Tables service
05:38:26omero.tables.module=runTables
05:38:2605:38:26#############################################
05:38:26## Server product name for release artifacts
05:38:26#############################################
05:38:26product.name=OMERO.server
05:38:2605:38:26#############################################
05:38:26### Properties below this marker are ignored by
05:38:26### omero.install.config_parser.PropertyParser
05:38:26### END
05:38:2605:38:26#############################################
05:38:26## Library versions
05:38:26#############################################
05:38:26##
05:38:26versions.findbugs=1.2.1
05:38:26versions.ice36=3.6.5
05:38:26versions.ice36_lib=36
05:38:26## internal
05:38:26versions.omeroshares36=3.6.3
05:38:26versions.omeromock36=3.6.3
05:38:26versions.icedb36=3.6.3
05:38:26versions.ipython=1.2.1
05:38:2605:38:26versions.janino=2.5.10
05:38:2605:38:26versions.reportng=1.1.1
05:38:2605:38:26versions.testng=7.5
05:38:26versions.velocity=1.4
05:38:2605:38:26versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE05:38:26versions.omero-scripts-url=${versions.omero-pypi}
05:38:2605:38:26###
05:38:26### Appended Values
05:38:26###
05:38:2605:38:26## Internal dependencies'
05:38:26+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/05:38:26+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive05:38:26+ echo versions.scripts-prefix=
05:38:26+ echo versions.scripts=merge_ci
05:38:26+ cat /home/omero/workspace/OMERO-push/version.properties
05:38:26+ git commit -a -m 'Add version.properties to etc/omero.properties'
05:38:26[detached HEAD f903836379] Add version.properties to etc/omero.properties
05:38:26 1 file changed, 47 insertions(+), 7 deletions(-)
05:38:26+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
05:38:27To github.com:snoopycrimecop/openmicroscopy.git
05:38:27 + e314753ae8...f903836379 HEAD -> merge_ci (forced update)
05:38:27Finished: SUCCESS
![[Jenkins]](/jenkins/static/24d5bb62/images/svgs/logo.svg){kind=logo}
